BLASTX nr result
ID: Panax21_contig00002866
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00002866
(1885 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002279701.2| PREDICTED: pentatricopeptide repeat-containi... 389 e-153
emb|CBI20513.3| unnamed protein product [Vitis vinifera] 389 e-153
ref|XP_002319806.1| predicted protein [Populus trichocarpa] gi|2... 384 e-145
ref|XP_002522838.1| pentatricopeptide repeat-containing protein,... 363 e-142
ref|XP_004152030.1| PREDICTED: pentatricopeptide repeat-containi... 340 e-134
>ref|XP_002279701.2| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
mitochondrial-like [Vitis vinifera]
Length = 848
Score = 389 bits (999), Expect(3) = e-153
Identities = 197/306 (64%), Positives = 235/306 (76%)
Frame = +3
Query: 573 GLNVLKEMEKAEVKPDSQTFSYLIGNCSCEKDITKYYEELKNSGVQVTKHIYMALINAYA 752
GL VLK+M A+VKPDSQTF YL+ NC CE+DI KYYE+LK +GVQVTKH++MALINAYA
Sbjct: 522 GLMVLKQMGDADVKPDSQTFCYLLNNCECEEDIIKYYEKLKCAGVQVTKHVFMALINAYA 581
Query: 753 TCGQLEKAKQVVFDKGVPAKNLNEIKSVLVSALASHGEMPDALKIYEELRQTEHNLEPRA 932
+CGQ EKAKQVV DKGVP K+LNEIKSVLVSALA HG++ DA IYEE++ + NLEP+A
Sbjct: 582 SCGQFEKAKQVVLDKGVPIKSLNEIKSVLVSALALHGQISDAFDIYEEIKNSGFNLEPKA 641
Query: 933 IISLIEHFPXXXXXXXXXXXXXXXXVPEYWVDGCFRVISYCVRHKQLSYAVDLLEQLKDK 1112
II LIE+ P+Y V+G R++ YCVR+ LS A+DLL+QLKD
Sbjct: 642 IILLIEYHQSEGDLTRLLQLLEELNDPDYRVEGSCRILLYCVRYNHLSSAIDLLKQLKDT 701
Query: 1113 FYNDEVAREVIFDEVFCQIAETEPIDLQIGLDLLQAIKKELGLRPSRKSLDFLLAACAKA 1292
F+++E+A E I DEVF IAE EP++L+IGLDLL AIK+ELGLRPSRKSLDFLLAAC
Sbjct: 702 FHDNELAMEAILDEVFSLIAEIEPVNLKIGLDLLTAIKEELGLRPSRKSLDFLLAACVNG 761
Query: 1293 KDLQSSYLIWREYETAGLPYNVLSFLRMYQALLALGDGQSARKMLRQIPTDDPHVCYVIK 1472
KDL +S LIWREY+TAG +NVLSFLRMYQA LA GD +SA +L +IP DDPHVC VIK
Sbjct: 762 KDLDNSRLIWREYQTAGFTHNVLSFLRMYQACLACGDHKSAANILHKIPKDDPHVCCVIK 821
Query: 1473 ASQAAY 1490
A Q Y
Sbjct: 822 ACQTTY 827
Score = 123 bits (308), Expect(3) = e-153
Identities = 57/86 (66%), Positives = 70/86 (81%)
Frame = +2
Query: 11 VILNFNNLHAELEVAPSSVPYEKLIRHCCDSLKVHTALDIVDQILEAGLTLSVEIFHSIL 190
VIL F +LHA+L V PSS Y KL+ +CCDS KVH ALDIVDQ+ EAGLTLS+E+FHSIL
Sbjct: 381 VILKFKDLHAQLVVTPSSTSYNKLVTYCCDSFKVHAALDIVDQMCEAGLTLSIEMFHSIL 440
Query: 191 NACEESCEYNLVHRIYALMCRHNLKP 268
A EES E+NLVHRIY+++C +L+P
Sbjct: 441 RASEESFEFNLVHRIYSVICHQSLEP 466
Score = 80.9 bits (198), Expect(3) = e-153
Identities = 36/54 (66%), Positives = 45/54 (83%)
Frame = +1
Query: 331 NLKPNSETFRCMISLSVKMKDYDGAYGMISDLVKMNLMPTANMYNAIMAGYFRE 492
+L+PN ETFR MI+L VKMKD+DGAY ++ D+ K+NL PTA +YNAIM GYFRE
Sbjct: 463 SLEPNCETFRIMINLHVKMKDFDGAYDLLKDMKKINLTPTAGIYNAIMGGYFRE 516
>emb|CBI20513.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 389 bits (999), Expect(3) = e-153
Identities = 197/306 (64%), Positives = 235/306 (76%)
Frame = +3
Query: 573 GLNVLKEMEKAEVKPDSQTFSYLIGNCSCEKDITKYYEELKNSGVQVTKHIYMALINAYA 752
GL VLK+M A+VKPDSQTF YL+ NC CE+DI KYYE+LK +GVQVTKH++MALINAYA
Sbjct: 292 GLMVLKQMGDADVKPDSQTFCYLLNNCECEEDIIKYYEKLKCAGVQVTKHVFMALINAYA 351
Query: 753 TCGQLEKAKQVVFDKGVPAKNLNEIKSVLVSALASHGEMPDALKIYEELRQTEHNLEPRA 932
+CGQ EKAKQVV DKGVP K+LNEIKSVLVSALA HG++ DA IYEE++ + NLEP+A
Sbjct: 352 SCGQFEKAKQVVLDKGVPIKSLNEIKSVLVSALALHGQISDAFDIYEEIKNSGFNLEPKA 411
Query: 933 IISLIEHFPXXXXXXXXXXXXXXXXVPEYWVDGCFRVISYCVRHKQLSYAVDLLEQLKDK 1112
II LIE+ P+Y V+G R++ YCVR+ LS A+DLL+QLKD
Sbjct: 412 IILLIEYHQSEGDLTRLLQLLEELNDPDYRVEGSCRILLYCVRYNHLSSAIDLLKQLKDT 471
Query: 1113 FYNDEVAREVIFDEVFCQIAETEPIDLQIGLDLLQAIKKELGLRPSRKSLDFLLAACAKA 1292
F+++E+A E I DEVF IAE EP++L+IGLDLL AIK+ELGLRPSRKSLDFLLAAC
Sbjct: 472 FHDNELAMEAILDEVFSLIAEIEPVNLKIGLDLLTAIKEELGLRPSRKSLDFLLAACVNG 531
Query: 1293 KDLQSSYLIWREYETAGLPYNVLSFLRMYQALLALGDGQSARKMLRQIPTDDPHVCYVIK 1472
KDL +S LIWREY+TAG +NVLSFLRMYQA LA GD +SA +L +IP DDPHVC VIK
Sbjct: 532 KDLDNSRLIWREYQTAGFTHNVLSFLRMYQACLACGDHKSAANILHKIPKDDPHVCCVIK 591
Query: 1473 ASQAAY 1490
A Q Y
Sbjct: 592 ACQTTY 597
Score = 123 bits (308), Expect(3) = e-153
Identities = 57/86 (66%), Positives = 70/86 (81%)
Frame = +2
Query: 11 VILNFNNLHAELEVAPSSVPYEKLIRHCCDSLKVHTALDIVDQILEAGLTLSVEIFHSIL 190
VIL F +LHA+L V PSS Y KL+ +CCDS KVH ALDIVDQ+ EAGLTLS+E+FHSIL
Sbjct: 151 VILKFKDLHAQLVVTPSSTSYNKLVTYCCDSFKVHAALDIVDQMCEAGLTLSIEMFHSIL 210
Query: 191 NACEESCEYNLVHRIYALMCRHNLKP 268
A EES E+NLVHRIY+++C +L+P
Sbjct: 211 RASEESFEFNLVHRIYSVICHQSLEP 236
Score = 80.9 bits (198), Expect(3) = e-153
Identities = 36/54 (66%), Positives = 45/54 (83%)
Frame = +1
Query: 331 NLKPNSETFRCMISLSVKMKDYDGAYGMISDLVKMNLMPTANMYNAIMAGYFRE 492
+L+PN ETFR MI+L VKMKD+DGAY ++ D+ K+NL PTA +YNAIM GYFRE
Sbjct: 233 SLEPNCETFRIMINLHVKMKDFDGAYDLLKDMKKINLTPTAGIYNAIMGGYFRE 286
>ref|XP_002319806.1| predicted protein [Populus trichocarpa] gi|222858182|gb|EEE95729.1|
predicted protein [Populus trichocarpa]
Length = 784
Score = 384 bits (985), Expect(3) = e-145
Identities = 192/305 (62%), Positives = 234/305 (76%)
Frame = +3
Query: 576 LNVLKEMEKAEVKPDSQTFSYLIGNCSCEKDITKYYEELKNSGVQVTKHIYMALINAYAT 755
L VLK+M+ A+VKPDS ++SYLI NC+ E++I KYYEE+K +G+QV+K I+MALINAYAT
Sbjct: 458 LMVLKQMKLADVKPDSSSYSYLISNCNNEEEIIKYYEEMKVAGIQVSKQIFMALINAYAT 517
Query: 756 CGQLEKAKQVVFDKGVPAKNLNEIKSVLVSALASHGEMPDALKIYEELRQTEHNLEPRAI 935
CGQ EKAKQV+ DK P K+LNEI+SVLVSALASHG+M DAL +YEE++Q NLEP+A+
Sbjct: 518 CGQFEKAKQVLLDKEFPIKHLNEIRSVLVSALASHGQMTDALNLYEEMKQAGSNLEPKAV 577
Query: 936 ISLIEHFPXXXXXXXXXXXXXXXXVPEYWVDGCFRVISYCVRHKQLSYAVDLLEQLKDKF 1115
ISLIEH YWVDGCFRVI YC+R+K L AVDLL+QLKD+F
Sbjct: 578 ISLIEHVDSEGEQSRLLKLLEELDDHNYWVDGCFRVILYCIRNKDLRSAVDLLKQLKDRF 637
Query: 1116 YNDEVAREVIFDEVFCQIAETEPIDLQIGLDLLQAIKKELGLRPSRKSLDFLLAACAKAK 1295
+DE+A EV+FDEVF Q+AETEP +++IG+DLLQAIK ELG PSRK LDFLL AC AK
Sbjct: 638 SDDELAMEVLFDEVFSQVAETEPANVRIGMDLLQAIKDELGASPSRKCLDFLLTACVNAK 697
Query: 1296 DLQSSYLIWREYETAGLPYNVLSFLRMYQALLALGDGQSARKMLRQIPTDDPHVCYVIKA 1475
DL +S L+W+EY+ AGLPYNV S+LRMYQALLA G SA+ ML +IP DDPHV VI+
Sbjct: 698 DLGNSLLVWKEYQAAGLPYNVTSYLRMYQALLASGGHVSAKVMLNKIPKDDPHVRIVIQE 757
Query: 1476 SQAAY 1490
Q Y
Sbjct: 758 CQRTY 762
Score = 93.2 bits (230), Expect(3) = e-145
Identities = 45/86 (52%), Positives = 62/86 (72%)
Frame = +2
Query: 11 VILNFNNLHAELEVAPSSVPYEKLIRHCCDSLKVHTALDIVDQILEAGLTLSVEIFHSIL 190
V+ F LH ++++PSS YEKL+ + C+ LKVH ALDIVDQ+ + GLT+S+ HSIL
Sbjct: 316 VVSKFKTLHMIMKMSPSSTSYEKLVVYNCNLLKVHLALDIVDQMCKEGLTISINTIHSIL 375
Query: 191 NACEESCEYNLVHRIYALMCRHNLKP 268
NA EES ++NLV RIY+L+ +L P
Sbjct: 376 NASEESFDFNLVRRIYSLIYHLDLTP 401
Score = 88.2 bits (217), Expect(3) = e-145
Identities = 40/54 (74%), Positives = 48/54 (88%)
Frame = +1
Query: 331 NLKPNSETFRCMISLSVKMKDYDGAYGMISDLVKMNLMPTANMYNAIMAGYFRE 492
+L PN+ETFR MISLSVKMKD++GAYG++ DL K+NL PTA+MYNAIM GYFRE
Sbjct: 398 DLTPNNETFRSMISLSVKMKDFEGAYGLLDDLKKLNLAPTASMYNAIMGGYFRE 451
>ref|XP_002522838.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223537922|gb|EEF39536.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 867
Score = 363 bits (933), Expect(3) = e-142
Identities = 185/306 (60%), Positives = 230/306 (75%)
Frame = +3
Query: 573 GLNVLKEMEKAEVKPDSQTFSYLIGNCSCEKDITKYYEELKNSGVQVTKHIYMALINAYA 752
GL VLK+ME A+VKPDSQT+S LI NC+ E I+KYYEELK G+ V+K I+MALINAYA
Sbjct: 551 GLMVLKKMELADVKPDSQTYSNLIANCNSENQISKYYEELKFVGIHVSKQIFMALINAYA 610
Query: 753 TCGQLEKAKQVVFDKGVPAKNLNEIKSVLVSALASHGEMPDALKIYEELRQTEHNLEPRA 932
TCGQ EKAKQV+ DKG+P +N+ EIKS LVSALASHG+M DAL +YEE+++ N+EP++
Sbjct: 611 TCGQFEKAKQVLLDKGIPIENVIEIKSALVSALASHGQMSDALVVYEEIKEAGGNMEPKS 670
Query: 933 IISLIEHFPXXXXXXXXXXXXXXXXVPEYWVDGCFRVISYCVRHKQLSYAVDLLEQLKDK 1112
+I LIEH+ P Y VDGC RV+ +C+R+K LS AV+LL+QLKD+
Sbjct: 671 VICLIEHYQSEGELSRLLKLLEELQDPNYCVDGCCRVMLWCIRNKHLSSAVNLLKQLKDR 730
Query: 1113 FYNDEVAREVIFDEVFCQIAETEPIDLQIGLDLLQAIKKELGLRPSRKSLDFLLAACAKA 1292
+DE+ +VIFDEVF IAE EP DL IGLDLLQ IK EL + PSRKSLDFLL+ACAKA
Sbjct: 731 LSSDELTMQVIFDEVFSLIAEMEPTDLLIGLDLLQVIKDELCVCPSRKSLDFLLSACAKA 790
Query: 1293 KDLQSSYLIWREYETAGLPYNVLSFLRMYQALLALGDGQSARKMLRQIPTDDPHVCYVIK 1472
KDL +S IW+EY AG PYNV+S+LRMYQALL+ GD +SA+ +L +I DDPHV +I+
Sbjct: 791 KDLTNSLFIWKEYHAAGYPYNVISYLRMYQALLSSGDYRSAKVILAEIQKDDPHVRRMIQ 850
Query: 1473 ASQAAY 1490
A Q Y
Sbjct: 851 ACQKTY 856
Score = 112 bits (281), Expect(3) = e-142
Identities = 54/85 (63%), Positives = 66/85 (77%)
Frame = +2
Query: 14 ILNFNNLHAELEVAPSSVPYEKLIRHCCDSLKVHTALDIVDQILEAGLTLSVEIFHSILN 193
IL F NLH LE+ PSS YEKLI + CD LKVH ALDIVDQ+ +A LTLS+++ +SIL
Sbjct: 411 ILKFKNLHVMLEMPPSSKSYEKLIIYSCDLLKVHAALDIVDQMCKADLTLSIDVLNSILR 470
Query: 194 ACEESCEYNLVHRIYALMCRHNLKP 268
ACEES E+NLV +IY+L+C HNL P
Sbjct: 471 ACEESFEFNLVQQIYSLICHHNLTP 495
Score = 79.3 bits (194), Expect(3) = e-142
Identities = 38/55 (69%), Positives = 43/55 (78%)
Frame = +1
Query: 328 HNLKPNSETFRCMISLSVKMKDYDGAYGMISDLVKMNLMPTANMYNAIMAGYFRE 492
HNL PN+ETFR MI L VKMKD+ GA+ M+ DL K L PTA+MYNAIMAG FRE
Sbjct: 491 HNLTPNNETFRSMIKLRVKMKDFCGAHDMLDDLKKFKLTPTASMYNAIMAGCFRE 545
>ref|XP_004152030.1| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
mitochondrial-like [Cucumis sativus]
Length = 1295
Score = 340 bits (873), Expect(3) = e-134
Identities = 176/320 (55%), Positives = 224/320 (70%), Gaps = 4/320 (1%)
Frame = +3
Query: 573 GLNVLKEMEKAEVKPDSQTFSYLIGNCSCEKDITKYYEELKNSGVQVTKHIYMALINAYA 752
G VLK+ME A+VKPDS TFSYLI NC CE+DI KYY+EL +SGVQ TKH++MALINAYA
Sbjct: 973 GFMVLKQMELADVKPDSITFSYLISNCECEEDIIKYYKELNHSGVQATKHVFMALINAYA 1032
Query: 753 TCGQLEKAKQVVFDKGVPAKNLNEIKSVLVSALASHGEMPDALKIYEELRQTEHNLEPRA 932
GQ EKAKQV+ D+G+P KNLNE++ VLVSALAS+G+ DALKIY+E++Q +L+ +A
Sbjct: 1033 AHGQFEKAKQVISDEGIPVKNLNEVRCVLVSALASNGQTADALKIYDEMKQAGCDLDCKA 1092
Query: 933 IISLIEHFPXXXXXXXXXXXXXXXXVP-EYWVDGCFRVISYCVRHKQLSYAVDLLEQLKD 1109
+ SLIEH+P W+ C R+I + V+H LS VDLL+QL
Sbjct: 1093 VSSLIEHYPFDGPLNRMLQLLGDLHHDLNGWIHCCSRIILFSVKHNDLSSTVDLLKQLSY 1152
Query: 1110 KFYNDEVAREVIFDEVFCQIAETEPIDLQIGLDLLQAIKKELGLRPSRKSLDFLLAACAK 1289
+ NDE V FDEVFC IA +EP L+IGL LL+ IK +LGL P R+ LDFLL CA
Sbjct: 1153 RCTNDETIMGVTFDEVFCLIANSEPTYLEIGLQLLKFIKNDLGLSPPRRCLDFLLGTCAN 1212
Query: 1290 AKDLQSSYLIWREYETAGLPYNVLSFLRMYQALLALGDGQSARKMLRQIPTDDPHVCYVI 1469
AKD +SS LIW+EYE AGL YN +S+L+MYQALLA GD +SA+ +L +IP DD VCY+I
Sbjct: 1213 AKDAESSRLIWKEYENAGLLYNTISYLKMYQALLASGDSKSAKLLLGKIPKDDADVCYII 1272
Query: 1470 KASQAAYGT---KECIIKAS 1520
K + Y + K+ ++K S
Sbjct: 1273 KECERVYSSTAKKKKVLKMS 1292
Score = 108 bits (269), Expect(3) = e-134
Identities = 48/86 (55%), Positives = 64/86 (74%)
Frame = +2
Query: 11 VILNFNNLHAELEVAPSSVPYEKLIRHCCDSLKVHTALDIVDQILEAGLTLSVEIFHSIL 190
V+ F ++H EL + PSS YEKLI +CC KVH ALDI +++ +A T S + HSIL
Sbjct: 832 VVSKFKSMHFELVINPSSASYEKLICYCCGLFKVHMALDIANEMCDADFTPSTGVLHSIL 891
Query: 191 NACEESCEYNLVHRIYALMCRHNLKP 268
+A +ESCEYNLVH++Y+L+CRHNLKP
Sbjct: 892 HALDESCEYNLVHQVYSLICRHNLKP 917
Score = 81.3 bits (199), Expect(3) = e-134
Identities = 37/55 (67%), Positives = 45/55 (81%)
Frame = +1
Query: 328 HNLKPNSETFRCMISLSVKMKDYDGAYGMISDLVKMNLMPTANMYNAIMAGYFRE 492
HNLKP+SE R MI+L VKMKD+ GAY M+ + KMN++PT N+YNAIMAGYFRE
Sbjct: 913 HNLKPDSEILRGMINLHVKMKDFKGAYDMLKEWEKMNVIPTTNLYNAIMAGYFRE 967