BLASTX nr result

ID: Panax21_contig00000964 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00000964
         (354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM65602.1| unknown [Arabidopsis thaliana]                          57   2e-06
ref|NP_563883.1| RING/FYVE/PHD zinc finger-containing protein [A...    57   2e-06
gb|AFK48121.1| unknown [Lotus japonicus]                               55   5e-06
ref|XP_002309239.1| predicted protein [Populus trichocarpa] gi|2...    55   6e-06
ref|XP_002332377.1| predicted protein [Populus trichocarpa] gi|2...    55   6e-06

>gb|AAM65602.1| unknown [Arabidopsis thaliana]
          Length = 320

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 28/35 (80%), Positives = 31/35 (88%), Gaps = 3/35 (8%)
 Frame = +3

Query: 93  VIAVIAGFAYLLDKDGTFRNSFN---DRILSKHPI 188
           VIAV+AGFAY++DKDG FRNSFN   DRILSKHPI
Sbjct: 154 VIAVMAGFAYMMDKDGEFRNSFNDDWDRILSKHPI 188


>ref|NP_563883.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]
           gi|26449897|dbj|BAC42070.1| unknown protein [Arabidopsis
           thaliana] gi|28827244|gb|AAO50466.1| unknown protein
           [Arabidopsis thaliana] gi|51971114|dbj|BAD44249.1|
           unknown protein [Arabidopsis thaliana]
           gi|332190554|gb|AEE28675.1| RING/FYVE/PHD zinc
           finger-containing protein [Arabidopsis thaliana]
          Length = 321

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 28/35 (80%), Positives = 31/35 (88%), Gaps = 3/35 (8%)
 Frame = +3

Query: 93  VIAVIAGFAYLLDKDGTFRNSFN---DRILSKHPI 188
           VIAV+AGFAY++DKDG FRNSFN   DRILSKHPI
Sbjct: 155 VIAVMAGFAYMMDKDGEFRNSFNDDWDRILSKHPI 189


>gb|AFK48121.1| unknown [Lotus japonicus]
          Length = 307

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 27/35 (77%), Positives = 30/35 (85%), Gaps = 3/35 (8%)
 Frame = +3

Query: 93  VIAVIAGFAYLLDKDGTFRNSFN---DRILSKHPI 188
           VIA I GFAY++DKDGTFRNSF+   DRILSKHPI
Sbjct: 141 VIAAIGGFAYIMDKDGTFRNSFDDGWDRILSKHPI 175


>ref|XP_002309239.1| predicted protein [Populus trichocarpa] gi|222855215|gb|EEE92762.1|
           predicted protein [Populus trichocarpa]
          Length = 310

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 27/35 (77%), Positives = 30/35 (85%), Gaps = 3/35 (8%)
 Frame = +3

Query: 93  VIAVIAGFAYLLDKDGTFRNSFN---DRILSKHPI 188
           VIA + GFAYL+DKDGTFRNSF+   DRILSKHPI
Sbjct: 144 VIAAMGGFAYLMDKDGTFRNSFSDGWDRILSKHPI 178


>ref|XP_002332377.1| predicted protein [Populus trichocarpa] gi|222832201|gb|EEE70678.1|
           predicted protein [Populus trichocarpa]
          Length = 308

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 27/35 (77%), Positives = 30/35 (85%), Gaps = 3/35 (8%)
 Frame = +3

Query: 93  VIAVIAGFAYLLDKDGTFRNSFN---DRILSKHPI 188
           VIA + GFAYL+DKDGTFRNSF+   DRILSKHPI
Sbjct: 142 VIAAMGGFAYLMDKDGTFRNSFSDGWDRILSKHPI 176


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