BLASTX nr result

ID: Panax21_contig00000889 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00000889
         (357 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306672.1| predicted protein [Populus trichocarpa] gi|2...   199   1e-49
ref|XP_002302202.1| predicted protein [Populus trichocarpa] gi|2...   198   3e-49
ref|XP_002268441.2| PREDICTED: F-box protein SKP2B-like [Vitis v...   198   4e-49
emb|CBI19930.3| unnamed protein product [Vitis vinifera]              198   4e-49
ref|XP_002520258.1| F-box/LRR-repeat protein, putative [Ricinus ...   192   3e-47

>ref|XP_002306672.1| predicted protein [Populus trichocarpa] gi|222856121|gb|EEE93668.1|
           predicted protein [Populus trichocarpa]
          Length = 363

 Score =  199 bits (507), Expect = 1e-49
 Identities = 95/118 (80%), Positives = 107/118 (90%)
 Frame = +2

Query: 2   VVASGVCSGWRDAICWGLTNLSLSWCKNNMNNLVLSLAPKFTKLRVLVLRQDKSQLQDNA 181
           ++ASGVCSGWRDAIC GLT+L LSWCKNNMNNLVLSLAPKFTKL+ LVLRQDK QL+D+A
Sbjct: 53  IMASGVCSGWRDAICMGLTHLCLSWCKNNMNNLVLSLAPKFTKLQTLVLRQDKPQLEDHA 112

Query: 182 VETIANCCHELQDLDLSKSFKLTDRCLYALAHGCSNLTKLNISGCSAFSDTSLSYLSK 355
           VETIA+ CH+LQDLDLSKSFKL+D  LYALAHGC NLTKLNISGC+AFSD  L YL++
Sbjct: 113 VETIASYCHDLQDLDLSKSFKLSDLSLYALAHGCPNLTKLNISGCTAFSDDGLEYLTE 170


>ref|XP_002302202.1| predicted protein [Populus trichocarpa] gi|222843928|gb|EEE81475.1|
           predicted protein [Populus trichocarpa]
          Length = 358

 Score =  198 bits (504), Expect = 3e-49
 Identities = 96/118 (81%), Positives = 107/118 (90%)
 Frame = +2

Query: 2   VVASGVCSGWRDAICWGLTNLSLSWCKNNMNNLVLSLAPKFTKLRVLVLRQDKSQLQDNA 181
           ++ASGVCSGWRDAIC GLT+L LSWCKNNMNNLVLSLAPKFTKL+ LVLRQDK QL+DNA
Sbjct: 48  IMASGVCSGWRDAICSGLTHLCLSWCKNNMNNLVLSLAPKFTKLQTLVLRQDKPQLEDNA 107

Query: 182 VETIANCCHELQDLDLSKSFKLTDRCLYALAHGCSNLTKLNISGCSAFSDTSLSYLSK 355
           VETIA+ CH+LQDLDLSKSFKL+D  LYALAHG  NLTKLNISGC+AFSD SL YL++
Sbjct: 108 VETIASYCHDLQDLDLSKSFKLSDLSLYALAHGFPNLTKLNISGCTAFSDVSLEYLTE 165


>ref|XP_002268441.2| PREDICTED: F-box protein SKP2B-like [Vitis vinifera]
          Length = 370

 Score =  198 bits (503), Expect = 4e-49
 Identities = 94/117 (80%), Positives = 106/117 (90%)
 Frame = +2

Query: 2   VVASGVCSGWRDAICWGLTNLSLSWCKNNMNNLVLSLAPKFTKLRVLVLRQDKSQLQDNA 181
           ++ASGVCSGWRDAIC GLT+LSLSWCKNNMNNLVLSLAPKFTKL+ L LRQDK QL+D A
Sbjct: 60  IMASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKFTKLQALTLRQDKPQLEDKA 119

Query: 182 VETIANCCHELQDLDLSKSFKLTDRCLYALAHGCSNLTKLNISGCSAFSDTSLSYLS 352
           VE IAN CH+LQDLDLSKSFKL+D  LYALAHGC NLTKLNISGC+AFSD +L++L+
Sbjct: 120 VEIIANYCHDLQDLDLSKSFKLSDSSLYALAHGCPNLTKLNISGCTAFSDAALAHLT 176


>emb|CBI19930.3| unnamed protein product [Vitis vinifera]
          Length = 428

 Score =  198 bits (503), Expect = 4e-49
 Identities = 94/117 (80%), Positives = 106/117 (90%)
 Frame = +2

Query: 2   VVASGVCSGWRDAICWGLTNLSLSWCKNNMNNLVLSLAPKFTKLRVLVLRQDKSQLQDNA 181
           ++ASGVCSGWRDAIC GLT+LSLSWCKNNMNNLVLSLAPKFTKL+ L LRQDK QL+D A
Sbjct: 118 IMASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKFTKLQALTLRQDKPQLEDKA 177

Query: 182 VETIANCCHELQDLDLSKSFKLTDRCLYALAHGCSNLTKLNISGCSAFSDTSLSYLS 352
           VE IAN CH+LQDLDLSKSFKL+D  LYALAHGC NLTKLNISGC+AFSD +L++L+
Sbjct: 178 VEIIANYCHDLQDLDLSKSFKLSDSSLYALAHGCPNLTKLNISGCTAFSDAALAHLT 234


>ref|XP_002520258.1| F-box/LRR-repeat protein, putative [Ricinus communis]
           gi|223540477|gb|EEF42044.1| F-box/LRR-repeat protein,
           putative [Ricinus communis]
          Length = 373

 Score =  192 bits (487), Expect = 3e-47
 Identities = 92/117 (78%), Positives = 102/117 (87%)
 Frame = +2

Query: 2   VVASGVCSGWRDAICWGLTNLSLSWCKNNMNNLVLSLAPKFTKLRVLVLRQDKSQLQDNA 181
           ++ASGVCSGWRDAIC GLT+L LSWCKN+MNNLVL LAPKFTKL  LVLRQDK QL+DNA
Sbjct: 63  IMASGVCSGWRDAICLGLTHLCLSWCKNHMNNLVLWLAPKFTKLETLVLRQDKPQLEDNA 122

Query: 182 VETIANCCHELQDLDLSKSFKLTDRCLYALAHGCSNLTKLNISGCSAFSDTSLSYLS 352
           VE IA  CH+L+DLDLSKSFKLTD  LYALAHGC NLTKLNISGC++FSD  L YL+
Sbjct: 123 VEAIARYCHDLEDLDLSKSFKLTDCSLYALAHGCPNLTKLNISGCTSFSDGGLEYLT 179


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