BLASTX nr result

ID: Panax21_contig00000874 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00000874
         (1062 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274648.1| PREDICTED: KH domain-containing protein At5g...   448   e-124
ref|XP_002532938.1| nucleic acid binding protein, putative [Rici...   441   e-121
ref|XP_002299073.1| predicted protein [Populus trichocarpa] gi|2...   436   e-120
ref|XP_002330577.1| predicted protein [Populus trichocarpa] gi|2...   431   e-118
ref|XP_004139764.1| PREDICTED: KH domain-containing protein At5g...   428   e-117

>ref|XP_002274648.1| PREDICTED: KH domain-containing protein At5g56140 isoform 1 [Vitis
           vinifera] gi|296089986|emb|CBI39805.3| unnamed protein
           product [Vitis vinifera]
          Length = 287

 Score =  448 bits (1153), Expect = e-124
 Identities = 232/290 (80%), Positives = 251/290 (86%), Gaps = 1/290 (0%)
 Frame = +2

Query: 128 MSSGRYMAYXXXXXXXXXX-HIAGLRSATSALAEQEKYLSELLQERHKLSPFMPVLPNCY 304
           MSSGRYMAY           HIAGLRSATSAL EQEKYLSELL ERHKLSPFMPVLP+ Y
Sbjct: 1   MSSGRYMAYSPSPSTAPHSPHIAGLRSATSALVEQEKYLSELLAERHKLSPFMPVLPHSY 60

Query: 305 RLLNQEILRVTTLLGSASVLDQSGLEHASPLASGGIYSNGGANVNRWTSPFQSEMSGLLQ 484
           RLLNQEILRVTTLLG+AS+LDQSGLEHASPLASGGI+SNGGANVN W SPFQSEMSGL  
Sbjct: 61  RLLNQEILRVTTLLGNASILDQSGLEHASPLASGGIFSNGGANVNGWASPFQSEMSGL-- 118

Query: 485 PXXXXXXXXXXXXXXXXIMKKTIRVDIPVNHFPNFNFVGRLLGPRGNSLKRVEASTDCRV 664
                            I+K+TIRVDIPV  FP++NFVGRLLGPRGNSLKR+EA+T+CRV
Sbjct: 119 -SAAQNWLGSQGSSSGLIVKRTIRVDIPVEKFPSYNFVGRLLGPRGNSLKRMEATTECRV 177

Query: 665 LIRGRGSIKDPIKEEIMRGKPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLKP 844
           LIRGRGSIKDP +EE+MRGKPGYEHLNEPLHILVEAELPVEI+DARLMQAREILEDLLKP
Sbjct: 178 LIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKP 237

Query: 845 VDESQDFYKKQQLRELALINGTLRDEGSQMSGSVSPFNNSLGMKRAKTRG 994
           VDESQDF+KKQQLRELA++NGTLR+EGS MSGSVSPF+NSLGMKRAKTRG
Sbjct: 238 VDESQDFFKKQQLRELAMLNGTLREEGSHMSGSVSPFHNSLGMKRAKTRG 287


>ref|XP_002532938.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223527289|gb|EEF29442.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 300

 Score =  441 bits (1135), Expect = e-121
 Identities = 223/300 (74%), Positives = 253/300 (84%), Gaps = 3/300 (1%)
 Frame = +2

Query: 104 LTAVIAGNMSSG---RYMAYXXXXXXXXXXHIAGLRSATSALAEQEKYLSELLQERHKLS 274
           +T  + G ++ G   R+MAY          H++GLRSA+SAL EQEKYLSELL ERHKLS
Sbjct: 1   MTTSVGGGITGGGGGRFMAYSPSPSAPHSPHLSGLRSASSALVEQEKYLSELLAERHKLS 60

Query: 275 PFMPVLPNCYRLLNQEILRVTTLLGSASVLDQSGLEHASPLASGGIYSNGGANVNRWTSP 454
           PFMPVLP+ YRLL+QEILRVTTLLG+ASVL QSGLEHASPLASGG++SNGGA+ N W S 
Sbjct: 61  PFMPVLPHTYRLLSQEILRVTTLLGNASVLGQSGLEHASPLASGGMFSNGGADANGWASR 120

Query: 455 FQSEMSGLLQPXXXXXXXXXXXXXXXXIMKKTIRVDIPVNHFPNFNFVGRLLGPRGNSLK 634
           FQSEMSGL+QP                I+K+TIRVDIP+  +P++NFVGRLLGPRGNSLK
Sbjct: 121 FQSEMSGLIQPSSAQNWLSSQGSSSGLIVKRTIRVDIPIERYPSYNFVGRLLGPRGNSLK 180

Query: 635 RVEASTDCRVLIRGRGSIKDPIKEEIMRGKPGYEHLNEPLHILVEAELPVEIIDARLMQA 814
           RVEAST+CRVLIRGRGSIKDP +EE+MRGKPGYEHLNEPLHILVEAELPVEI+DAR+ QA
Sbjct: 181 RVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARIAQA 240

Query: 815 REILEDLLKPVDESQDFYKKQQLRELALINGTLRDEGSQMSGSVSPFNNSLGMKRAKTRG 994
           REILEDLLKPVDESQDFYKKQQLRELA++NGTLR+EGS MSGSVSPF+NSLGMKRAKTRG
Sbjct: 241 REILEDLLKPVDESQDFYKKQQLRELAMLNGTLREEGSPMSGSVSPFHNSLGMKRAKTRG 300


>ref|XP_002299073.1| predicted protein [Populus trichocarpa] gi|222846331|gb|EEE83878.1|
           predicted protein [Populus trichocarpa]
          Length = 302

 Score =  436 bits (1120), Expect = e-120
 Identities = 224/299 (74%), Positives = 250/299 (83%), Gaps = 3/299 (1%)
 Frame = +2

Query: 107 TAVIAGNMSSGRYMAYXXXXXXXXXXHIAGLRS--ATSALA-EQEKYLSELLQERHKLSP 277
           T  +   + +GR+MAY          HI+GLRS  A+SAL  EQEKYLSELL ERHK+SP
Sbjct: 4   TGGVGVGVGAGRFMAYSPSPSAPHSPHISGLRSSAASSALVVEQEKYLSELLAERHKISP 63

Query: 278 FMPVLPNCYRLLNQEILRVTTLLGSASVLDQSGLEHASPLASGGIYSNGGANVNRWTSPF 457
           F+PVLPN YRLLNQEILRVTTLLG+ASVL QSGLEHASPLASGGI+SNG A+ N W S F
Sbjct: 64  FLPVLPNTYRLLNQEILRVTTLLGNASVLGQSGLEHASPLASGGIFSNGAADANGWASRF 123

Query: 458 QSEMSGLLQPXXXXXXXXXXXXXXXXIMKKTIRVDIPVNHFPNFNFVGRLLGPRGNSLKR 637
           QSEMSG+LQP                I+K+TIRVDIPV+ +PN+NFVGRLLGPRGNSLKR
Sbjct: 124 QSEMSGILQPSSAQNWLSSQGSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKR 183

Query: 638 VEASTDCRVLIRGRGSIKDPIKEEIMRGKPGYEHLNEPLHILVEAELPVEIIDARLMQAR 817
           VEAST+CRVLIRGRGSIKDP +E++MRGKPGYEHLNEPLHILVE ELPVEI+DARLMQAR
Sbjct: 184 VEASTECRVLIRGRGSIKDPAREDMMRGKPGYEHLNEPLHILVEGELPVEIVDARLMQAR 243

Query: 818 EILEDLLKPVDESQDFYKKQQLRELALINGTLRDEGSQMSGSVSPFNNSLGMKRAKTRG 994
           EILEDLL+PVDESQD+YKKQQLRELAL+NGT R+EGS MSGSVSPFNNSLGMKRAKTRG
Sbjct: 244 EILEDLLRPVDESQDYYKKQQLRELALLNGTFREEGSPMSGSVSPFNNSLGMKRAKTRG 302


>ref|XP_002330577.1| predicted protein [Populus trichocarpa] gi|222872135|gb|EEF09266.1|
           predicted protein [Populus trichocarpa]
          Length = 301

 Score =  431 bits (1109), Expect = e-118
 Identities = 223/292 (76%), Positives = 245/292 (83%), Gaps = 3/292 (1%)
 Frame = +2

Query: 128 MSSGRYMAYXXXXXXXXXXHIAGLRS--ATSALA-EQEKYLSELLQERHKLSPFMPVLPN 298
           + + R+MAY          HI+GLRS  A+SAL  EQEKYLSELL ERHK+ PFMPVLPN
Sbjct: 10  VGASRFMAYSPSPSAPHSPHISGLRSSAASSALVVEQEKYLSELLAERHKIIPFMPVLPN 69

Query: 299 CYRLLNQEILRVTTLLGSASVLDQSGLEHASPLASGGIYSNGGANVNRWTSPFQSEMSGL 478
            YRLLNQEILRVTTLLG+ASVL QSGLEHASPL+SGGI+SNG A+ N W S FQSEMSG+
Sbjct: 70  IYRLLNQEILRVTTLLGNASVLGQSGLEHASPLSSGGIFSNGAADANGWASRFQSEMSGM 129

Query: 479 LQPXXXXXXXXXXXXXXXXIMKKTIRVDIPVNHFPNFNFVGRLLGPRGNSLKRVEASTDC 658
           LQP                I K+TIRVDIPV+ +PN+NFVGRLLGPRGNSLKRVEAST+C
Sbjct: 130 LQPSSAQNWLSSQGSSSGLIAKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTEC 189

Query: 659 RVLIRGRGSIKDPIKEEIMRGKPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLL 838
           RVLIRGRGSIKDP KEE+MRGKPGYEHLNEPLHILVE ELPVEI+DARLMQA EILEDLL
Sbjct: 190 RVLIRGRGSIKDPAKEEMMRGKPGYEHLNEPLHILVEGELPVEIVDARLMQASEILEDLL 249

Query: 839 KPVDESQDFYKKQQLRELALINGTLRDEGSQMSGSVSPFNNSLGMKRAKTRG 994
           KPVDESQD+YKKQQLRELA++NGTLR+EGS MSGSVSPFNNSLGMKRAKTRG
Sbjct: 250 KPVDESQDYYKKQQLRELAMLNGTLREEGSPMSGSVSPFNNSLGMKRAKTRG 301


>ref|XP_004139764.1| PREDICTED: KH domain-containing protein At5g56140-like [Cucumis
           sativus] gi|449508337|ref|XP_004163285.1| PREDICTED: KH
           domain-containing protein At5g56140-like [Cucumis
           sativus]
          Length = 296

 Score =  428 bits (1100), Expect = e-117
 Identities = 222/292 (76%), Positives = 243/292 (83%), Gaps = 4/292 (1%)
 Frame = +2

Query: 131 SSGRYMAYXXXXXXXXXXHIAGLRSATSALA----EQEKYLSELLQERHKLSPFMPVLPN 298
           ++G YMA+          H+ GLRS +SA A    EQEKYLSELL ER KLSPFMPVLPN
Sbjct: 5   AAGMYMAFSPSPSAPHSPHLPGLRSPSSASAAAILEQEKYLSELLAERQKLSPFMPVLPN 64

Query: 299 CYRLLNQEILRVTTLLGSASVLDQSGLEHASPLASGGIYSNGGANVNRWTSPFQSEMSGL 478
            YRLLNQEILRVTTLLG ASVL QSGLEHASPLASGGI+SNGGA+++ W S FQSEMSGL
Sbjct: 65  SYRLLNQEILRVTTLLGKASVLGQSGLEHASPLASGGIFSNGGADMSAWPSRFQSEMSGL 124

Query: 479 LQPXXXXXXXXXXXXXXXXIMKKTIRVDIPVNHFPNFNFVGRLLGPRGNSLKRVEASTDC 658
           LQ                 I+K+TIRVD+PV  FPN+NFVGRLLGPRGNSLKRVEASTDC
Sbjct: 125 LQASSAQNWLTSQGSSSGLIVKRTIRVDVPVETFPNYNFVGRLLGPRGNSLKRVEASTDC 184

Query: 659 RVLIRGRGSIKDPIKEEIMRGKPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLL 838
           RVLIRGRGSIKDP +EE+MRGKPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLL
Sbjct: 185 RVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLL 244

Query: 839 KPVDESQDFYKKQQLRELALINGTLRDEGSQMSGSVSPFNNSLGMKRAKTRG 994
           KP++ES DFYKKQQLRELA++NGTLR+EGS MS SVSPF+NSLGMKRAKTRG
Sbjct: 245 KPMEESHDFYKKQQLRELAMLNGTLREEGSPMSSSVSPFHNSLGMKRAKTRG 296


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