BLASTX nr result

ID: Panax21_contig00000842 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00000842
         (442 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279095.1| PREDICTED: cleavage and polyadenylation spec...    79   5e-13
emb|CBI27869.3| unnamed protein product [Vitis vinifera]               79   5e-13
ref|NP_001242595.1| uncharacterized protein LOC100791216 [Glycin...    75   6e-12
ref|XP_002514092.1| pre-mRNA cleavage factor im, 25kD subunit, p...    71   1e-10
ref|XP_003547488.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and...    70   2e-10

>ref|XP_002279095.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           5-like [Vitis vinifera]
          Length = 284

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 34/46 (73%), Positives = 38/46 (82%)
 Frame = +1

Query: 304 DIDGLRRKLSNKLSEHCDGTGSDWEVGECLSKWWRSDFETLFYPYL 441
           +I+GL+RKLS KLS + DG GSDWEVGECL  WWR DFETL YPYL
Sbjct: 171 EINGLKRKLSRKLSVNEDGDGSDWEVGECLGMWWRPDFETLLYPYL 216


>emb|CBI27869.3| unnamed protein product [Vitis vinifera]
          Length = 291

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 34/46 (73%), Positives = 38/46 (82%)
 Frame = +1

Query: 304 DIDGLRRKLSNKLSEHCDGTGSDWEVGECLSKWWRSDFETLFYPYL 441
           +I+GL+RKLS KLS + DG GSDWEVGECL  WWR DFETL YPYL
Sbjct: 178 EINGLKRKLSRKLSVNEDGDGSDWEVGECLGMWWRPDFETLLYPYL 223


>ref|NP_001242595.1| uncharacterized protein LOC100791216 [Glycine max]
           gi|255640824|gb|ACU20695.1| unknown [Glycine max]
          Length = 216

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 31/46 (67%), Positives = 37/46 (80%)
 Frame = +1

Query: 304 DIDGLRRKLSNKLSEHCDGTGSDWEVGECLSKWWRSDFETLFYPYL 441
           D DGL+RKL+ KLS + DG GS+WEVGECL  WWR DFETL YP++
Sbjct: 108 DTDGLKRKLARKLSVNEDGDGSEWEVGECLGMWWRPDFETLMYPFI 153


>ref|XP_002514092.1| pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus
           communis] gi|223546548|gb|EEF48046.1| pre-mRNA cleavage
           factor im, 25kD subunit, putative [Ricinus communis]
          Length = 214

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 33/46 (71%), Positives = 35/46 (76%)
 Frame = +1

Query: 304 DIDGLRRKLSNKLSEHCDGTGSDWEVGECLSKWWRSDFETLFYPYL 441
           DI GL+RKLS KLS + D T  DWEVGECL  WWR DFETL YPYL
Sbjct: 103 DIGGLKRKLSRKLSNNQDQT--DWEVGECLGMWWRPDFETLLYPYL 146


>ref|XP_003547488.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
           specificity factor subunit 5-like [Glycine max]
          Length = 233

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 31/46 (67%), Positives = 35/46 (76%)
 Frame = +1

Query: 304 DIDGLRRKLSNKLSEHCDGTGSDWEVGECLSKWWRSDFETLFYPYL 441
           D DGL+RKL+ KLS   DG GS+WEVGECL  WWR DFETL +P L
Sbjct: 124 DTDGLKRKLARKLSIIEDGDGSEWEVGECLEMWWRPDFETLVFPCL 169


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