BLASTX nr result

ID: Panax21_contig00000812 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00000812
         (408 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI20399.3| unnamed protein product [Vitis vinifera]              110   3e-43
ref|XP_002284309.2| PREDICTED: ubiquitin carboxyl-terminal hydro...   110   3e-43
gb|AFK40689.1| unknown [Lotus japonicus]                              101   2e-40
gb|AEL99146.1| ubiquitin carboxyl-terminal hydrolase, partial [S...   104   1e-39
ref|XP_002317532.1| predicted protein [Populus trichocarpa] gi|2...   100   2e-39

>emb|CBI20399.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  110 bits (275), Expect(2) = 3e-43
 Identities = 49/54 (90%), Positives = 51/54 (94%)
 Frame = +2

Query: 245 LPDGGGRYRLIGLVSHIGTSTHCGHYVAHIYKDGRWAIFNDEKVGASKDPPKDM 406
           LPDGGGRYRLIGLVSHIGTST CGHYVAHIYKDGRW IFND+KVGAS +PPKDM
Sbjct: 744 LPDGGGRYRLIGLVSHIGTSTQCGHYVAHIYKDGRWVIFNDDKVGASINPPKDM 797



 Score = 90.1 bits (222), Expect(2) = 3e-43
 Identities = 44/53 (83%), Positives = 51/53 (96%), Gaps = 1/53 (1%)
 Frame = +3

Query: 3   DQSKVDTLVSFGFQEEIARKALKASGGDIEKATDWIFSN-DSAGSSDMDATSS 158
           DQSKVDTL+SFGFQE+I+R+AL+ASGGDIEKATDWIFSN D+A SSDMDAT+S
Sbjct: 683 DQSKVDTLISFGFQEDISRRALRASGGDIEKATDWIFSNPDAASSSDMDATTS 735


>ref|XP_002284309.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Vitis
           vinifera]
          Length = 794

 Score =  110 bits (275), Expect(2) = 3e-43
 Identities = 49/54 (90%), Positives = 51/54 (94%)
 Frame = +2

Query: 245 LPDGGGRYRLIGLVSHIGTSTHCGHYVAHIYKDGRWAIFNDEKVGASKDPPKDM 406
           LPDGGGRYRLIGLVSHIGTST CGHYVAHIYKDGRW IFND+KVGAS +PPKDM
Sbjct: 730 LPDGGGRYRLIGLVSHIGTSTQCGHYVAHIYKDGRWVIFNDDKVGASINPPKDM 783



 Score = 90.1 bits (222), Expect(2) = 3e-43
 Identities = 44/53 (83%), Positives = 51/53 (96%), Gaps = 1/53 (1%)
 Frame = +3

Query: 3   DQSKVDTLVSFGFQEEIARKALKASGGDIEKATDWIFSN-DSAGSSDMDATSS 158
           DQSKVDTL+SFGFQE+I+R+AL+ASGGDIEKATDWIFSN D+A SSDMDAT+S
Sbjct: 669 DQSKVDTLISFGFQEDISRRALRASGGDIEKATDWIFSNPDAASSSDMDATTS 721


>gb|AFK40689.1| unknown [Lotus japonicus]
          Length = 244

 Score =  101 bits (251), Expect(2) = 2e-40
 Identities = 43/55 (78%), Positives = 49/55 (89%)
 Frame = +2

Query: 242 ALPDGGGRYRLIGLVSHIGTSTHCGHYVAHIYKDGRWAIFNDEKVGASKDPPKDM 406
           +LPDGGG+YRL+G+VSH GTS HCGHYVAHI KDGRW IFND+KVGAS  PPK+M
Sbjct: 179 SLPDGGGKYRLMGVVSHSGTSVHCGHYVAHILKDGRWVIFNDDKVGASISPPKEM 233



 Score = 89.7 bits (221), Expect(2) = 2e-40
 Identities = 44/52 (84%), Positives = 47/52 (90%)
 Frame = +3

Query: 3   DQSKVDTLVSFGFQEEIARKALKASGGDIEKATDWIFSNDSAGSSDMDATSS 158
           DQSKVDTL+SFGFQEEIARKALKASGGDIEKATDWIF++  A  S MDATSS
Sbjct: 118 DQSKVDTLISFGFQEEIARKALKASGGDIEKATDWIFTSPDASVSSMDATSS 169


>gb|AEL99146.1| ubiquitin carboxyl-terminal hydrolase, partial [Silene latifolia]
          Length = 442

 Score =  104 bits (259), Expect(2) = 1e-39
 Identities = 43/54 (79%), Positives = 50/54 (92%)
 Frame = +2

Query: 245 LPDGGGRYRLIGLVSHIGTSTHCGHYVAHIYKDGRWAIFNDEKVGASKDPPKDM 406
           LPDG GRY+L+G VSH+GTSTHCGHYVAHIYKDG+W ++NDEKVGAS +PPKDM
Sbjct: 380 LPDGTGRYKLLGFVSHMGTSTHCGHYVAHIYKDGKWVLYNDEKVGASLNPPKDM 433



 Score = 84.0 bits (206), Expect(2) = 1e-39
 Identities = 42/53 (79%), Positives = 48/53 (90%), Gaps = 1/53 (1%)
 Frame = +3

Query: 3   DQSKVDTLVSFGFQEEIARKALKASGGDIEKATDWIFSNDSA-GSSDMDATSS 158
           DQSKVDTLV+FGFQEE+ARKAL A+GGDIEKATDWIFSN +A  +SDMD +SS
Sbjct: 317 DQSKVDTLVTFGFQEELARKALMATGGDIEKATDWIFSNPNASATSDMDTSSS 369


>ref|XP_002317532.1| predicted protein [Populus trichocarpa] gi|222860597|gb|EEE98144.1|
           predicted protein [Populus trichocarpa]
          Length = 809

 Score =  100 bits (249), Expect(2) = 2e-39
 Identities = 43/54 (79%), Positives = 47/54 (87%)
 Frame = +2

Query: 245 LPDGGGRYRLIGLVSHIGTSTHCGHYVAHIYKDGRWAIFNDEKVGASKDPPKDM 406
           LPDG GRYRL G+VSH+GTSTHCGHYVAH+ KDGRW IFND KV AS +PPKDM
Sbjct: 745 LPDGRGRYRLFGIVSHMGTSTHCGHYVAHVLKDGRWVIFNDNKVAASINPPKDM 798



 Score = 87.4 bits (215), Expect(2) = 2e-39
 Identities = 44/53 (83%), Positives = 50/53 (94%), Gaps = 1/53 (1%)
 Frame = +3

Query: 3   DQSKVDTLVSFGFQEEIARKALKASGGDIEKATDWIFSN-DSAGSSDMDATSS 158
           DQSKVDTL+SFGFQEEIARKALKASGGDIEKATDWIF+N D++ SSDMD ++S
Sbjct: 682 DQSKVDTLLSFGFQEEIARKALKASGGDIEKATDWIFNNPDASVSSDMDTSTS 734


Top