BLASTX nr result

ID: Panax21_contig00000767 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00000767
         (1067 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABB86267.1| DNA binding protein ACBF-like [Solanum tuberosum]      351   2e-94
gb|AAC49850.1| DNA binding protein ACBF [Nicotiana tabacum]           350   3e-94
gb|AAB92518.1| putative RNA binding protein [Nicotiana tabacum]       350   3e-94
sp|Q9LEB3.1|RBP47_NICPL RecName: Full=Polyadenylate-binding prot...   348   2e-93
emb|CBI32444.3| unnamed protein product [Vitis vinifera]              332   1e-88

>gb|ABB86267.1| DNA binding protein ACBF-like [Solanum tuberosum]
          Length = 372

 Score =  351 bits (900), Expect = 2e-94
 Identities = 177/262 (67%), Positives = 202/262 (77%)
 Frame = -2

Query: 787 IQTSSEENKSIWIGDLQTWMDENYLQSCFAPSGEAISVKIIRNKQTGQSERFGFIEFVSH 608
           IQ SSE+NK+IWIGDLQ WMDENYL SCF+ +GE ISVKIIRNKQTGQSER+GF+EF +H
Sbjct: 25  IQNSSEDNKTIWIGDLQQWMDENYLHSCFSHAGEVISVKIIRNKQTGQSERYGFVEFNTH 84

Query: 607 AAAEKVLQGYNGTVMPSTDQAFRLNWATFSTGERRQDAGSDLSIFVGDLASDVNDTILHE 428
           AAAEKVLQ YNGT+MP+ +Q FRLNWA FS GE+R + GSD SIFVGDLASDV DT+L +
Sbjct: 85  AAAEKVLQSYNGTMMPNAEQPFRLNWAAFSAGEKRAETGSDFSIFVGDLASDVTDTMLRD 144

Query: 427 TFATRYQSVRGAKVVVDTNTGRSKGYGFVXXXXXXXXXXXXXXXXSKGYGFVRFGDENER 248
           TFA+R+ SV+GAKVVVD NTG SK                       GYGFVRFGDE+ER
Sbjct: 145 TFASRFPSVKGAKVVVDANTGHSK-----------------------GYGFVRFGDESER 181

Query: 247 SRAMSEMNGQYCSSRPMRIGVATPKKPSAQQQYSTQXXXXXXXXXXXXXLHQGSQSESDT 68
           SRAM+EMNG YCSSRPMR+GVATPKKPSAQQQ+S+Q                GSQS+ D+
Sbjct: 182 SRAMTEMNGIYCSSRPMRVGVATPKKPSAQQQFSSQAVILSGGYASNGSATHGSQSDGDS 241

Query: 67  SNTTIFVGGLDSDVTDEELRQT 2
           SNTTIFVGGLDSDVTDEELRQ+
Sbjct: 242 SNTTIFVGGLDSDVTDEELRQS 263


>gb|AAC49850.1| DNA binding protein ACBF [Nicotiana tabacum]
          Length = 428

 Score =  350 bits (898), Expect = 3e-94
 Identities = 178/262 (67%), Positives = 202/262 (77%)
 Frame = -2

Query: 787 IQTSSEENKSIWIGDLQTWMDENYLQSCFAPSGEAISVKIIRNKQTGQSERFGFIEFVSH 608
           IQ+SSE+NK+IWIGDLQ WMDE+YL SCF+ +GE ISVKIIRNKQTGQSER+GF+EF +H
Sbjct: 76  IQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTH 135

Query: 607 AAAEKVLQGYNGTVMPSTDQAFRLNWATFSTGERRQDAGSDLSIFVGDLASDVNDTILHE 428
           AAAEKVLQ YNGT+MP+ +Q FRLNWA FSTGE+R + GSD SIFVGDLASDV DT+L +
Sbjct: 136 AAAEKVLQSYNGTMMPNAEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRD 195

Query: 427 TFATRYQSVRGAKVVVDTNTGRSKGYGFVXXXXXXXXXXXXXXXXSKGYGFVRFGDENER 248
           TFA+RY S++GAKVVVD NTG SK                       GYGFVRFGDE+ER
Sbjct: 196 TFASRYPSLKGAKVVVDANTGHSK-----------------------GYGFVRFGDESER 232

Query: 247 SRAMSEMNGQYCSSRPMRIGVATPKKPSAQQQYSTQXXXXXXXXXXXXXLHQGSQSESDT 68
           SRAM+EMNG YCSSR MRIGVATPKKPSAQQQYS+Q                GSQS+ D 
Sbjct: 233 SRAMTEMNGVYCSSRAMRIGVATPKKPSAQQQYSSQAVILSGGYASNGAATHGSQSDGDA 292

Query: 67  SNTTIFVGGLDSDVTDEELRQT 2
           SNTTIFVGGLDSDVTDEELRQ+
Sbjct: 293 SNTTIFVGGLDSDVTDEELRQS 314


>gb|AAB92518.1| putative RNA binding protein [Nicotiana tabacum]
          Length = 482

 Score =  350 bits (898), Expect = 3e-94
 Identities = 178/262 (67%), Positives = 202/262 (77%)
 Frame = -2

Query: 787 IQTSSEENKSIWIGDLQTWMDENYLQSCFAPSGEAISVKIIRNKQTGQSERFGFIEFVSH 608
           IQ+SSE+NK+IWIGDLQ WMDE+YL SCF+ +GE ISVKIIRNKQTGQSER+GF+EF +H
Sbjct: 130 IQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTH 189

Query: 607 AAAEKVLQGYNGTVMPSTDQAFRLNWATFSTGERRQDAGSDLSIFVGDLASDVNDTILHE 428
           AAAEKVLQ YNGT+MP+ +Q FRLNWA FSTGE+R + GSD SIFVGDLASDV DT+L +
Sbjct: 190 AAAEKVLQSYNGTMMPNAEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRD 249

Query: 427 TFATRYQSVRGAKVVVDTNTGRSKGYGFVXXXXXXXXXXXXXXXXSKGYGFVRFGDENER 248
           TFA+RY S++GAKVVVD NTG SK                       GYGFVRFGDE+ER
Sbjct: 250 TFASRYPSLKGAKVVVDANTGHSK-----------------------GYGFVRFGDESER 286

Query: 247 SRAMSEMNGQYCSSRPMRIGVATPKKPSAQQQYSTQXXXXXXXXXXXXXLHQGSQSESDT 68
           SRAM+EMNG YCSSR MRIGVATPKKPSAQQQYS+Q                GSQS+ D 
Sbjct: 287 SRAMTEMNGVYCSSRAMRIGVATPKKPSAQQQYSSQAVILSGGYASNGAATHGSQSDGDA 346

Query: 67  SNTTIFVGGLDSDVTDEELRQT 2
           SNTTIFVGGLDSDVTDEELRQ+
Sbjct: 347 SNTTIFVGGLDSDVTDEELRQS 368


>sp|Q9LEB3.1|RBP47_NICPL RecName: Full=Polyadenylate-binding protein RBP47;
           Short=Poly(A)-binding protein RBP47; AltName:
           Full=RNA-binding protein 47; Short=NplRBP47
           gi|9663769|emb|CAC01238.1| RNA Binding Protein 47
           [Nicotiana plumbaginifolia]
          Length = 428

 Score =  348 bits (892), Expect = 2e-93
 Identities = 176/262 (67%), Positives = 203/262 (77%)
 Frame = -2

Query: 787 IQTSSEENKSIWIGDLQTWMDENYLQSCFAPSGEAISVKIIRNKQTGQSERFGFIEFVSH 608
           IQ+SSE+NK+IWIGDLQ WMDE+YL SCF+ +GE ISVKIIRNKQTGQSER+GF+EF +H
Sbjct: 76  IQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTH 135

Query: 607 AAAEKVLQGYNGTVMPSTDQAFRLNWATFSTGERRQDAGSDLSIFVGDLASDVNDTILHE 428
           AAAEKVLQ YNGT+MP+T+Q FRLNWA FSTGE+R + GSD SIFVGDLASDV DT+L +
Sbjct: 136 AAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRD 195

Query: 427 TFATRYQSVRGAKVVVDTNTGRSKGYGFVXXXXXXXXXXXXXXXXSKGYGFVRFGDENER 248
           TFA+RY S++GAKVVVD NTG SK                       GYGFVRFGDE+ER
Sbjct: 196 TFASRYPSLKGAKVVVDANTGHSK-----------------------GYGFVRFGDESER 232

Query: 247 SRAMSEMNGQYCSSRPMRIGVATPKKPSAQQQYSTQXXXXXXXXXXXXXLHQGSQSESDT 68
           SRAM+EMNG YCSSR MRIGVATPKKPSA +QYS+Q                GSQS+ D+
Sbjct: 233 SRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDS 292

Query: 67  SNTTIFVGGLDSDVTDEELRQT 2
           SNTTIFVGGLDS+VTDEELRQ+
Sbjct: 293 SNTTIFVGGLDSEVTDEELRQS 314


>emb|CBI32444.3| unnamed protein product [Vitis vinifera]
          Length = 342

 Score =  332 bits (850), Expect = 1e-88
 Identities = 168/260 (64%), Positives = 197/260 (75%), Gaps = 1/260 (0%)
 Frame = -2

Query: 778 SSEENKSIWIGDLQTWMDENYLQSCFAPSGEAISVKIIRNKQTGQSERFGFIEFVSHAAA 599
           S++E K++W+GDL  WMD+NYL++CF  +GE  S+KIIRNKQTGQSE +GF+EF S A A
Sbjct: 4   STDEIKTLWVGDLHQWMDDNYLRTCFGHTGEVSSIKIIRNKQTGQSEGYGFVEFFSRATA 63

Query: 598 EKVLQGYNGTVMPSTDQAFRLNWATFSTGERRQDAGSDLSIFVGDLASDVNDTILHETFA 419
           EK+L  YNGT+MP+T+Q FRLNWATFSTG+RR DAGSDLSIFVGDLASDV D +L ETFA
Sbjct: 64  EKILHSYNGTLMPNTEQPFRLNWATFSTGDRRTDAGSDLSIFVGDLASDVTDALLQETFA 123

Query: 418 TRYQSVRGAKVVVDTNTGRSKGYGFVXXXXXXXXXXXXXXXXSKGYGFVRFGDENERSRA 239
           TRY SV+GAKVV D+NTGRSK                       GYGFVRFGDENERSRA
Sbjct: 124 TRYPSVKGAKVVTDSNTGRSK-----------------------GYGFVRFGDENERSRA 160

Query: 238 MSEMNGQYCSSRPMRIGVATPKKPSA-QQQYSTQXXXXXXXXXXXXXLHQGSQSESDTSN 62
           M+EMNG YCSSRPMRIGVATPKK S  QQQYS+Q             + QGSQ+  D++N
Sbjct: 161 MNEMNGIYCSSRPMRIGVATPKKASGYQQQYSSQALVLAGGNASNGAVAQGSQANGDSTN 220

Query: 61  TTIFVGGLDSDVTDEELRQT 2
           TTIFVGGLDS+VTDE+LRQ+
Sbjct: 221 TTIFVGGLDSEVTDEDLRQS 240


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