BLASTX nr result

ID: Panax21_contig00000643 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00000643
         (676 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281709.1| PREDICTED: AP2/ERF and B3 domain-containing ...   252   5e-65
emb|CAN68564.1| hypothetical protein VITISV_032171 [Vitis vinifera]   252   5e-65
gb|ACF74549.1| RAV [Nicotiana tabacum]                                243   3e-62
ref|XP_002524409.1| DNA-binding protein RAV1, putative [Ricinus ...   241   1e-61
ref|XP_002315958.1| AP2 domain-containing transcription factor [...   239   4e-61

>ref|XP_002281709.1| PREDICTED: AP2/ERF and B3 domain-containing transcription repressor
           TEM1-like [Vitis vinifera]
          Length = 358

 Score =  252 bits (643), Expect = 5e-65
 Identities = 130/171 (76%), Positives = 140/171 (81%), Gaps = 10/171 (5%)
 Frame = -1

Query: 484 KSPEISLCRMGSGTSVILDSEGGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWL 305
           KSPE SLCR+GSGTSVILDSE  +EAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWL
Sbjct: 29  KSPE-SLCRVGSGTSVILDSESSIEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWL 87

Query: 304 GTFNEELEAAKAYDIAAQRFRGRDAVTNFKLLSDTQVDDTETIFLNSHSKTEIVDMLRKH 125
           GTFNEE EAAKAYDIAAQRFRGRDAVTNFK LS+T+ DD E  FLNSHSK EIVDMLRKH
Sbjct: 88  GTFNEEEEAAKAYDIAAQRFRGRDAVTNFKPLSETEEDDIEAAFLNSHSKAEIVDMLRKH 147

Query: 124 TYSDELEQSKKNRGFQQK----------TVIFDERILKARDQLFEKAVTPS 2
           TY+DELEQSK+N G              T    +R+ K+R+QLFEK VTPS
Sbjct: 148 TYNDELEQSKRNYGLDANGKRSRAEGLMTPFGSDRVTKSREQLFEKTVTPS 198


>emb|CAN68564.1| hypothetical protein VITISV_032171 [Vitis vinifera]
          Length = 364

 Score =  252 bits (643), Expect = 5e-65
 Identities = 130/171 (76%), Positives = 140/171 (81%), Gaps = 10/171 (5%)
 Frame = -1

Query: 484 KSPEISLCRMGSGTSVILDSEGGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWL 305
           KSPE SLCR+GSGTSVILDSE  +EAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWL
Sbjct: 29  KSPE-SLCRVGSGTSVILDSESSIEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWL 87

Query: 304 GTFNEELEAAKAYDIAAQRFRGRDAVTNFKLLSDTQVDDTETIFLNSHSKTEIVDMLRKH 125
           GTFNEE EAAKAYDIAAQRFRGRDAVTNFK LS+T+ DD E  FLNSHSK EIVDMLRKH
Sbjct: 88  GTFNEEEEAAKAYDIAAQRFRGRDAVTNFKPLSETEEDDIEAAFLNSHSKAEIVDMLRKH 147

Query: 124 TYSDELEQSKKNRGFQQK----------TVIFDERILKARDQLFEKAVTPS 2
           TY+DELEQSK+N G              T    +R+ K+R+QLFEK VTPS
Sbjct: 148 TYNDELEQSKRNYGLDANGKRSRAEGLMTPFGSDRVTKSREQLFEKTVTPS 198


>gb|ACF74549.1| RAV [Nicotiana tabacum]
          Length = 385

 Score =  243 bits (619), Expect = 3e-62
 Identities = 129/176 (73%), Positives = 143/176 (81%), Gaps = 15/176 (8%)
 Frame = -1

Query: 484 KSPEISLCRMGSGTSVILDSEGGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWL 305
           KSPE SLCRMGSGTSVI+D+E GVEAESRKLPSSR++GVVPQPNGRWGAQIYEKHQRVWL
Sbjct: 31  KSPE-SLCRMGSGTSVIIDAENGVEAESRKLPSSRYEGVVPQPNGRWGAQIYEKHQRVWL 89

Query: 304 GTFNEELEAAKAYDIAAQRFRGRDAVTNFK-LLSDTQVDDTETIFLNSHSKTEIVDMLRK 128
           GTFNEE EAA+AYD+AAQRFRGRDAVTNFK LL + + DD E  FLNSHSK EIVDMLRK
Sbjct: 90  GTFNEENEAARAYDVAAQRFRGRDAVTNFKPLLENEENDDMEIAFLNSHSKAEIVDMLRK 149

Query: 127 HTYSDELEQSKKNRGFQQ------------KTVIFD--ERILKARDQLFEKAVTPS 2
           HTY DELEQSKKN GF +             +  F   +++ KAR+QLFEKAVTPS
Sbjct: 150 HTYIDELEQSKKNYGFSKDGKRTYCTKDGLMSSFFSSVDKVNKAREQLFEKAVTPS 205


>ref|XP_002524409.1| DNA-binding protein RAV1, putative [Ricinus communis]
           gi|223536370|gb|EEF38020.1| DNA-binding protein RAV1,
           putative [Ricinus communis]
          Length = 371

 Score =  241 bits (615), Expect = 1e-61
 Identities = 128/179 (71%), Positives = 145/179 (81%), Gaps = 18/179 (10%)
 Frame = -1

Query: 484 KSPEISLCRMGSGTSVILDSEGGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWL 305
           KSPE  LCR+GSGTSV+LDSE G+EAESRKLPSS++KGVVPQPNGRWGAQIYEKHQRVWL
Sbjct: 33  KSPESPLCRVGSGTSVVLDSESGIEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWL 92

Query: 304 GTFNEELEAAKAYDIAAQRFRGRDAVTNFKLLS---DTQVDDTETIFLNSHSKTEIVDML 134
           GTFNEE EAAKAYDIAAQRFRGRDA+TNFK  +    ++ D+ ET FLNSHSK EIVDML
Sbjct: 93  GTFNEEDEAAKAYDIAAQRFRGRDAITNFKPQATDHQSEEDEIETAFLNSHSKAEIVDML 152

Query: 133 RKHTYSDELEQSKKN------RG--FQQKTVI-------FDERILKARDQLFEKAVTPS 2
           RKHTY+DELEQSK+N      RG  FQ +T +        +  I+KAR+QLFEKAVTPS
Sbjct: 153 RKHTYNDELEQSKRNYTSNNGRGDKFQNRTNMNNVGLSGSERIIMKAREQLFEKAVTPS 211


>ref|XP_002315958.1| AP2 domain-containing transcription factor [Populus trichocarpa]
           gi|222864998|gb|EEF02129.1| AP2 domain-containing
           transcription factor [Populus trichocarpa]
          Length = 367

 Score =  239 bits (610), Expect = 4e-61
 Identities = 128/178 (71%), Positives = 142/178 (79%), Gaps = 17/178 (9%)
 Frame = -1

Query: 484 KSPEISLCRMGSG-TSVILDSEGGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVW 308
           KSP  SLCR+ SG +SVILDSE GVEAESRKLPSS++KGVVPQPNGRWGAQIYEKHQRVW
Sbjct: 36  KSPPESLCRVRSGNSSVILDSESGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVW 95

Query: 307 LGTFNEELEAAKAYDIAAQRFRGRDAVTNFKLLSDTQVDDTETIFLNSHSKTEIVDMLRK 128
           LGTFNEE EAA+AYDIAAQRFRGRDAVTNFK +++T+ D+ E  FLN+HSK EIVDMLRK
Sbjct: 96  LGTFNEENEAARAYDIAAQRFRGRDAVTNFKQVNETEDDEIEAAFLNAHSKAEIVDMLRK 155

Query: 127 HTYSDELEQSKKN-------RGFQQKTVIFDE---------RILKARDQLFEKAVTPS 2
           HTYSDELEQSK+N        G Q K     E         R+LKAR+QLFEKAVTPS
Sbjct: 156 HTYSDELEQSKRNHRSNNGGNGKQYKNTANYENNSYDHGCGRVLKAREQLFEKAVTPS 213


Top