BLASTX nr result
ID: Paeonia25_contig00007310
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia25_contig00007310
(201 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAY85217.1| RNA polymerase II second largest subunit [Muehlen... 57 2e-15
gb|ADV71985.1| RNA polymerase II second largest subunit [Rhodode... 57 3e-15
gb|ADV71931.1| RNA polymerase II second largest subunit [Rhodode... 57 4e-15
gb|AAY85195.1| RNA polymerase II second largest subunit [Callist... 57 9e-15
gb|ADV71929.1| RNA polymerase II second largest subunit [Rhodode... 57 9e-15
gb|ABR10069.1| RNA polymerase II second largest subunit [Trichop... 51 3e-09
emb|CBY22838.1| unnamed protein product [Oikopleura dioica] 45 1e-08
dbj|BAO48643.1| RNA polymerase II second largest subunit, partia... 45 3e-08
gb|EMS54198.1| DNA-directed RNA polymerase II subunit RPB2 [Trit... 54 6e-08
dbj|BAO48682.1| RNA polymerase II second largest subunit, partia... 44 6e-08
emb|CBK22657.2| unnamed protein product [Blastocystis hominis] 48 7e-08
gb|ELU13810.1| hypothetical protein CAPTEDRAFT_172112 [Capitella... 45 1e-07
gb|AFP65418.1| DNA-directed RNA polymerase II second largest sub... 46 2e-07
dbj|BAO48652.1| RNA polymerase II second largest subunit, partia... 44 2e-07
gb|ABV81792.1| putative DNA-directed RNA polymerase II subunit 2... 48 4e-07
gb|ACY43742.1| RNA polymerase subunit 1 [Cryptocellus centralis] 47 1e-06
gb|AEJ86702.1| RNA polymerase II second largest subunit, partial... 57 2e-06
gb|EYU43393.1| hypothetical protein MIMGU_mgv1a000385mg [Mimulus... 57 3e-06
gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus not... 57 3e-06
ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Ar... 57 3e-06
>gb|AAY85217.1| RNA polymerase II second largest subunit [Muehlenbeckia platyclada]
Length = 875
Score = 56.6 bits (135), Expect(2) = 2e-15
Identities = 25/29 (86%), Positives = 25/29 (86%)
Frame = -1
Query: 87 EGKLAKPLLLHNSQWGMMCLAGTPEGQAC 1
EGKLAKP LHNSQWGMMC A TPEGQAC
Sbjct: 391 EGKLAKPRQLHNSQWGMMCPAETPEGQAC 419
Score = 50.8 bits (120), Expect(2) = 2e-15
Identities = 26/39 (66%), Positives = 28/39 (71%)
Frame = -3
Query: 199 GNWGQAKAVGTRAGVSQAIFLSLCVESLTYASSLSHLRR 83
GNWGQA A GTRAGVSQ + LTYAS+LSHLRR
Sbjct: 351 GNWGQANAAGTRAGVSQVL------NRLTYASTLSHLRR 383
>gb|ADV71985.1| RNA polymerase II second largest subunit [Rhododendron
moulmainense]
Length = 205
Score = 56.6 bits (135), Expect(2) = 3e-15
Identities = 25/29 (86%), Positives = 25/29 (86%)
Frame = -1
Query: 87 EGKLAKPLLLHNSQWGMMCLAGTPEGQAC 1
EGKLAKP LHNSQWGMMC A TPEGQAC
Sbjct: 130 EGKLAKPRQLHNSQWGMMCPAETPEGQAC 158
Score = 50.8 bits (120), Expect(2) = 3e-15
Identities = 26/39 (66%), Positives = 28/39 (71%)
Frame = -3
Query: 199 GNWGQAKAVGTRAGVSQAIFLSLCVESLTYASSLSHLRR 83
GNWGQA A GTRAGVSQ + LTYASS+SHLRR
Sbjct: 90 GNWGQANAAGTRAGVSQVL------NRLTYASSVSHLRR 122
>gb|ADV71931.1| RNA polymerase II second largest subunit [Rhododendron
praetervisum]
Length = 205
Score = 56.6 bits (135), Expect(2) = 4e-15
Identities = 25/29 (86%), Positives = 25/29 (86%)
Frame = -1
Query: 87 EGKLAKPLLLHNSQWGMMCLAGTPEGQAC 1
EGKLAKP LHNSQWGMMC A TPEGQAC
Sbjct: 130 EGKLAKPRQLHNSQWGMMCPAETPEGQAC 158
Score = 50.1 bits (118), Expect(2) = 4e-15
Identities = 25/39 (64%), Positives = 28/39 (71%)
Frame = -3
Query: 199 GNWGQAKAVGTRAGVSQAIFLSLCVESLTYASSLSHLRR 83
GNWGQA A GTRAGVSQ + LTYAS++SHLRR
Sbjct: 90 GNWGQANAAGTRAGVSQVL------NRLTYASTMSHLRR 122
>gb|AAY85195.1| RNA polymerase II second largest subunit [Callistemon subulatus]
Length = 952
Score = 56.6 bits (135), Expect(2) = 9e-15
Identities = 25/29 (86%), Positives = 25/29 (86%)
Frame = -1
Query: 87 EGKLAKPLLLHNSQWGMMCLAGTPEGQAC 1
EGKLAKP LHNSQWGMMC A TPEGQAC
Sbjct: 391 EGKLAKPRQLHNSQWGMMCPAETPEGQAC 419
Score = 48.9 bits (115), Expect(2) = 9e-15
Identities = 25/39 (64%), Positives = 27/39 (69%)
Frame = -3
Query: 199 GNWGQAKAVGTRAGVSQAIFLSLCVESLTYASSLSHLRR 83
GNWGQA A GTRAGVSQ + LTYAS+L HLRR
Sbjct: 351 GNWGQANAAGTRAGVSQVL------NRLTYASTLPHLRR 383
>gb|ADV71929.1| RNA polymerase II second largest subunit [Rhododendron rugosum]
Length = 205
Score = 56.6 bits (135), Expect(2) = 9e-15
Identities = 25/29 (86%), Positives = 25/29 (86%)
Frame = -1
Query: 87 EGKLAKPLLLHNSQWGMMCLAGTPEGQAC 1
EGKLAKP LHNSQWGMMC A TPEGQAC
Sbjct: 130 EGKLAKPRQLHNSQWGMMCPAETPEGQAC 158
Score = 48.9 bits (115), Expect(2) = 9e-15
Identities = 25/39 (64%), Positives = 27/39 (69%)
Frame = -3
Query: 199 GNWGQAKAVGTRAGVSQAIFLSLCVESLTYASSLSHLRR 83
GNWGQA A GTRAGVSQ + LTYAS+ SHLRR
Sbjct: 90 GNWGQANAAGTRAGVSQVL------NRLTYASTXSHLRR 122
>gb|ABR10069.1| RNA polymerase II second largest subunit [Trichopilus
porphyrophaeus]
Length = 358
Score = 51.2 bits (121), Expect(2) = 3e-09
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -1
Query: 87 EGKLAKPLLLHNSQWGMMCLAGTPEGQAC 1
EGK+AKP LHN+ WGM+C A TPEGQAC
Sbjct: 101 EGKIAKPRQLHNTHWGMVCPAETPEGQAC 129
Score = 35.4 bits (80), Expect(2) = 3e-09
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -3
Query: 199 GNWG-QAKAVGTRAGVSQAIFLSLCVESLTYASSLSHLRR 83
GNWG Q K++ ++AGVSQ + TYAS+LSHL R
Sbjct: 60 GNWGDQKKSMSSKAGVSQVL------NRYTYASTLSHLCR 93
>emb|CBY22838.1| unnamed protein product [Oikopleura dioica]
Length = 1187
Score = 45.4 bits (106), Expect(2) = 1e-08
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = -1
Query: 87 EGKLAKPLLLHNSQWGMMCLAGTPEGQA 4
+GKLAKP LH++QWGM+C A TPEG A
Sbjct: 493 DGKLAKPRQLHSTQWGMVCPAETPEGHA 520
Score = 39.3 bits (90), Expect(2) = 1e-08
Identities = 24/40 (60%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -3
Query: 199 GNWG-QAKAVGTRAGVSQAIFLSLCVESLTYASSLSHLRR 83
GNWG Q KA R GVSQ + LTYASSLSHLRR
Sbjct: 452 GNWGDQQKASQCRPGVSQVL------NRLTYASSLSHLRR 485
>dbj|BAO48643.1| RNA polymerase II second largest subunit, partial [Diplomaragna sp.
My009]
Length = 1149
Score = 45.1 bits (105), Expect(2) = 3e-08
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -1
Query: 87 EGKLAKPLLLHNSQWGMMCLAGTPEGQA 4
EGKLAKP LHN+ WGM+C A TPEG A
Sbjct: 466 EGKLAKPRQLHNTLWGMICPAETPEGGA 493
Score = 38.5 bits (88), Expect(2) = 3e-08
Identities = 23/40 (57%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -3
Query: 199 GNWG-QAKAVGTRAGVSQAIFLSLCVESLTYASSLSHLRR 83
GNWG Q KA RAGVSQ + LT+AS+LSHLRR
Sbjct: 425 GNWGDQKKAHQARAGVSQVL------NRLTFASTLSHLRR 458
>gb|EMS54198.1| DNA-directed RNA polymerase II subunit RPB2 [Triticum urartu]
Length = 1204
Score = 53.5 bits (127), Expect(2) = 6e-08
Identities = 24/31 (77%), Positives = 24/31 (77%)
Frame = -1
Query: 93 TYEGKLAKPLLLHNSQWGMMCLAGTPEGQAC 1
T GKLAKP LHNS WGMMC A TPEGQAC
Sbjct: 484 TRAGKLAKPRQLHNSHWGMMCPAETPEGQAC 514
Score = 28.9 bits (63), Expect(2) = 6e-08
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -3
Query: 199 GNWGQAKAVGTRAG 158
GNWGQA GTRAG
Sbjct: 474 GNWGQANQAGTRAG 487
>dbj|BAO48682.1| RNA polymerase II second largest subunit, partial [Symphylella
vulgaris]
Length = 985
Score = 43.9 bits (102), Expect(2) = 6e-08
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = -1
Query: 87 EGKLAKPLLLHNSQWGMMCLAGTPEGQA 4
+GKLAKP LHN+ WGM+C A TPEG A
Sbjct: 300 DGKLAKPRQLHNTLWGMICPAETPEGGA 327
Score = 38.5 bits (88), Expect(2) = 6e-08
Identities = 23/40 (57%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -3
Query: 199 GNWG-QAKAVGTRAGVSQAIFLSLCVESLTYASSLSHLRR 83
GNWG Q KA RAGVSQ + LTY S+LSHLRR
Sbjct: 259 GNWGDQKKAHQARAGVSQVL------NRLTYVSTLSHLRR 292
>emb|CBK22657.2| unnamed protein product [Blastocystis hominis]
Length = 1194
Score = 47.8 bits (112), Expect(2) = 7e-08
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = -1
Query: 81 KLAKPLLLHNSQWGMMCLAGTPEGQAC 1
K+ KP LLH++QWGMMC A TPEGQ+C
Sbjct: 461 KVTKPRLLHSTQWGMMCPAETPEGQSC 487
Score = 34.3 bits (77), Expect(2) = 7e-08
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -3
Query: 199 GNWG-QAKAVGTRAGVSQAIFLSLCVESLTYASSLSHLRR 83
GNWG +++ + T GVSQ++ LTYASSLS LRR
Sbjct: 418 GNWGDRSRGMPTTTGVSQSL------NRLTYASSLSSLRR 451
>gb|ELU13810.1| hypothetical protein CAPTEDRAFT_172112 [Capitella teleta]
Length = 1174
Score = 44.7 bits (104), Expect(2) = 1e-07
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -1
Query: 87 EGKLAKPLLLHNSQWGMMCLAGTPEG 10
+GKLA+P LHN+QWGM+C A TPEG
Sbjct: 494 DGKLARPRQLHNTQWGMICPAETPEG 519
Score = 37.0 bits (84), Expect(2) = 1e-07
Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -3
Query: 199 GNWG-QAKAVGTRAGVSQAIFLSLCVESLTYASSLSHLRR 83
GNWG Q KA RAGVSQ + LT+ S+LSHLRR
Sbjct: 453 GNWGDQKKAHQARAGVSQVL------NRLTFVSTLSHLRR 486
>gb|AFP65418.1| DNA-directed RNA polymerase II second largest subunit [Chroomonas
mesostigmatica CCMP1168]
Length = 1222
Score = 46.2 bits (108), Expect(2) = 2e-07
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = -1
Query: 87 EGKLAKPLLLHNSQWGMMCLAGTPEGQAC 1
+GKL KP LHN+ WG++C A TPEG AC
Sbjct: 525 DGKLTKPRQLHNTHWGLICPAETPEGHAC 553
Score = 34.3 bits (77), Expect(2) = 2e-07
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = -3
Query: 199 GNWGQAKAVGTRAGVSQAIFLSLCVESLTYASSLSHLRR 83
GNWG K V +R GVSQ + LT++S+LSHLRR
Sbjct: 486 GNWGIDKQV-SRTGVSQVL------NRLTFSSALSHLRR 517
>dbj|BAO48652.1| RNA polymerase II second largest subunit, partial [Hanseniella
caldaria]
Length = 1152
Score = 43.9 bits (102), Expect(2) = 2e-07
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = -1
Query: 87 EGKLAKPLLLHNSQWGMMCLAGTPEGQA 4
+GKLAKP LHN+ WGM+C A TPEG A
Sbjct: 466 DGKLAKPRQLHNTLWGMICPAETPEGGA 493
Score = 36.6 bits (83), Expect(2) = 2e-07
Identities = 22/40 (55%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 199 GNWG-QAKAVGTRAGVSQAIFLSLCVESLTYASSLSHLRR 83
GNWG Q KA R GVSQ + LTY S+LSHLRR
Sbjct: 425 GNWGEQKKAHQARPGVSQVL------NRLTYVSTLSHLRR 458
>gb|ABV81792.1| putative DNA-directed RNA polymerase II subunit 2 [Thulinius
stephaniae]
Length = 237
Score = 47.8 bits (112), Expect(2) = 4e-07
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = -1
Query: 87 EGKLAKPLLLHNSQWGMMCLAGTPEGQA 4
EGKLAKP LHN+ WGM+C A TPEGQA
Sbjct: 33 EGKLAKPRQLHNTLWGMICPAETPEGQA 60
Score = 32.0 bits (71), Expect(2) = 4e-07
Identities = 18/29 (62%), Positives = 19/29 (65%)
Frame = -3
Query: 169 TRAGVSQAIFLSLCVESLTYASSLSHLRR 83
TRAGVSQ + LTY SSLSHLRR
Sbjct: 3 TRAGVSQVL------NRLTYCSSLSHLRR 25
>gb|ACY43742.1| RNA polymerase subunit 1 [Cryptocellus centralis]
Length = 235
Score = 47.4 bits (111), Expect(2) = 1e-06
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = -1
Query: 87 EGKLAKPLLLHNSQWGMMCLAGTPEGQA 4
+GKLAKP LHN+QWGM+C A TPEG A
Sbjct: 33 DGKLAKPRQLHNTQWGMICPAETPEGHA 60
Score = 30.4 bits (67), Expect(2) = 1e-06
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = -3
Query: 166 RAGVSQAIFLSLCVESLTYASSLSHLRR 83
RAGVSQ + LTYAS+LSHLRR
Sbjct: 4 RAGVSQVL------NRLTYASTLSHLRR 25
>gb|AEJ86702.1| RNA polymerase II second largest subunit, partial [Vitis vinifera
subsp. silvestris]
Length = 101
Score = 57.4 bits (137), Expect = 2e-06
Identities = 27/42 (64%), Positives = 29/42 (69%)
Frame = -1
Query: 126 LNH*RMHPVCLTYEGKLAKPLLLHNSQWGMMCLAGTPEGQAC 1
L+H R + EGKLAKP LHNS WGMMC A TPEGQAC
Sbjct: 3 LSHLRXXXXXIGREGKLAKPRQLHNSHWGMMCPAETPEGQAC 44
>gb|EYU43393.1| hypothetical protein MIMGU_mgv1a000385mg [Mimulus guttatus]
Length = 1197
Score = 57.0 bits (136), Expect = 3e-06
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = -1
Query: 126 LNH*RMHPVCLTYEGKLAKPLLLHNSQWGMMCLAGTPEGQAC 1
L+H R + EGKLAKP LHNSQWGMMC A TPEGQAC
Sbjct: 487 LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQAC 528
>gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
Length = 1193
Score = 57.0 bits (136), Expect = 3e-06
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = -1
Query: 126 LNH*RMHPVCLTYEGKLAKPLLLHNSQWGMMCLAGTPEGQAC 1
L+H R + EGKLAKP LHNSQWGMMC A TPEGQAC
Sbjct: 483 LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQAC 524
>ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
gi|21542437|sp|P38420.2|NRPB2_ARATH RecName:
Full=DNA-directed RNA polymerase II subunit 2; AltName:
Full=DNA-directed RNA polymerase II 135 kDa polypeptide;
AltName: Full=DNA-directed RNA polymerase II subunit
RPB2; Short=RNA polymerase II subunit 2; Short=RNA
polymerase II subunit B2; AltName: Full=Protein EMBRYO
DEFECTIVE 1989 gi|4455279|emb|CAB36815.1| DNA-directed
RNA polymerase (EC 2.7.7.6) II second largest chain
[Arabidopsis thaliana] gi|7268968|emb|CAB81278.1|
DNA-directed RNA polymerase (EC 2.7.7.6) II second
largest chain [Arabidopsis thaliana]
gi|332659093|gb|AEE84493.1| DNA-directed RNA polymerase
II subunit RPB2 [Arabidopsis thaliana]
Length = 1188
Score = 57.0 bits (136), Expect = 3e-06
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = -1
Query: 126 LNH*RMHPVCLTYEGKLAKPLLLHNSQWGMMCLAGTPEGQAC 1
L+H R + EGKLAKP LHNSQWGMMC A TPEGQAC
Sbjct: 483 LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQAC 524