BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia25_contig00000953
         (3948 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III s...  1872   0.0  
ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citr...  1853   0.0  
ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III s...  1852   0.0  
ref|XP_007010799.1| DNA-directed RNA polymerase isoform 1 [Theob...  1842   0.0  
ref|XP_007010801.1| DNA-directed RNA polymerase isoform 3 [Theob...  1829   0.0  
ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put...  1801   0.0  
ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III s...  1782   0.0  
ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III s...  1764   0.0  
ref|XP_004308665.1| PREDICTED: DNA-directed RNA polymerase III s...  1763   0.0  
ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III s...  1762   0.0  
ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutr...  1756   0.0  
ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arab...  1754   0.0  
ref|XP_006494574.1| PREDICTED: DNA-directed RNA polymerase III s...  1748   0.0  
ref|XP_006279912.1| hypothetical protein CARUB_v10025768mg [Caps...  1746   0.0  
ref|NP_199327.4| DNA-directed RNA polymerase RPC2 [Arabidopsis t...  1732   0.0  
ref|XP_007010805.1| DNA-directed RNA polymerase isoform 7 [Theob...  1719   0.0  
ref|XP_006583557.1| PREDICTED: DNA-directed RNA polymerase III s...  1716   0.0  
dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis...  1706   0.0  
ref|XP_007152964.1| hypothetical protein PHAVU_004G175000g [Phas...  1701   0.0  
ref|XP_004510587.1| PREDICTED: DNA-directed RNA polymerase III s...  1699   0.0  

>ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera]
          Length = 1142

 Score = 1872 bits (4848), Expect = 0.0
 Identities = 923/1133 (81%), Positives = 1017/1133 (89%), Gaps = 9/1133 (0%)
 Frame = +2

Query: 59   AQPFKPPPAVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSIY 238
            A P K   AV+KF L+PEFLKVRGLVKQHLDSFNYFV   IKKIVRAN RI S VD SIY
Sbjct: 12   ADPVKQ--AVDKFPLLPEFLKVRGLVKQHLDSFNYFVKTDIKKIVRANDRIVSSVDPSIY 69

Query: 239  LRFKDIRIGEPSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNV 418
            LRFKD+RIGEPS+  DG+ EKLNPH CRLSD+TY APILV+IEYI GSH+QKT   KN+V
Sbjct: 70   LRFKDVRIGEPSITVDGISEKLNPHTCRLSDMTYAAPILVNIEYITGSHVQKTRVEKNDV 129

Query: 419  VIGRLPIMLRSCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIII 598
            VIGR+PIMLRSC CVLY+KDEA LA+LGECPLDPGGYF++KGTEKV+LIQEQLSKNRIII
Sbjct: 130  VIGRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNRIII 189

Query: 599  DTDKKGRVNASVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQE 778
            DTDKKG +NASV SSTE+ KSKT I +EKEKI++QLN F +K +PIM+VMKAMGME+DQE
Sbjct: 190  DTDKKGNINASVTSSTESTKSKTVIVMEKEKIWLQLNQFTSK-IPIMIVMKAMGMESDQE 248

Query: 779  VVQMVGRDPRFSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKA 958
            VVQMVGR+PR+S LLLPS+EEC +HGI +QQ+ALEFL+RK+ K P Y  S EK+ R M  
Sbjct: 249  VVQMVGRNPRYSALLLPSMEECASHGIYTQQQALEFLERKVKKLPFYNPSLEKEGRGMAI 308

Query: 959  LREVFIGHVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSL 1138
            LR+ FI +V V QNN RPKCLY AVM+RRMM+AI+NKD MDDKDYVGNKRLELSGQ++SL
Sbjct: 309  LRDTFIANVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYVGNKRLELSGQLISL 368

Query: 1139 LFEDLFKTMIGEVIKTMDAILAKPSRSSRLDPSQ---LIARNNITAGLERTLSTGQFDIK 1309
            LFEDLFKTMI EV KT+DAILAKPSRSSR D SQ    I R++IT GLERTLSTG +D+K
Sbjct: 369  LFEDLFKTMISEVKKTIDAILAKPSRSSRFDFSQCLRFIVRDSITVGLERTLSTGNWDVK 428

Query: 1310 RFRLHRSGMTQPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 1489
            RFR+HR GM+Q + RLS+IGSLGHMTKI PQFEKSRKVSGPRALQPSQWGMLCPCDTPEG
Sbjct: 429  RFRMHRKGMSQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 488

Query: 1490 EACGLVKNLALMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILG 1669
            EACGLVKNLALMTHVTTDEEE PL+S+CY LGVEDLELLSGEELHTPNSFLI+FNGLILG
Sbjct: 489  EACGLVKNLALMTHVTTDEEESPLISLCYSLGVEDLELLSGEELHTPNSFLIIFNGLILG 548

Query: 1670 KHRRPQRFANALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 1849
            KHRRPQRFANALRKLRRAGKIGEFVSV+VNEKQ CVYIASDGGRVCRP+VIADKG SRIK
Sbjct: 549  KHRRPQRFANALRKLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPVVIADKGKSRIK 608

Query: 1850 EHHMRELLDGVRTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGV 2029
            EHHM+EL+DGVRTFDDFLR+GLIEYLDVNEENNALIALYE +A  +TTHIEIEP TILGV
Sbjct: 609  EHHMKELIDGVRTFDDFLRDGLIEYLDVNEENNALIALYEADAKPETTHIEIEPFTILGV 668

Query: 2030 IAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIEL 2209
             AGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIEL
Sbjct: 669  CAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIEL 728

Query: 2210 VGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTS 2389
            VGYDKLGAGQNATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIVMKK   VN++YENN S
Sbjct: 729  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKFSAVNQRYENNAS 788

Query: 2390 DRILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRGV---ECQ 2551
            DRI+RP +   D ++MQILDDDG+AAPGEII+ NDIY+NK+SP+ T+  ++  V   +  
Sbjct: 789  DRIVRPLKVGHDAERMQILDDDGLAAPGEIIKPNDIYINKESPIITKGPLISPVGLPDSA 848

Query: 2552 YKSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCG 2731
            YK + Q FKGPEGE  VVDRVALCSD+N+NLCI F+IRHTRRPEVGDKFSSRHGQKGVCG
Sbjct: 849  YKPSRQTFKGPEGEASVVDRVALCSDKNSNLCIKFLIRHTRRPEVGDKFSSRHGQKGVCG 908

Query: 2732 TIIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPS 2911
            TIIQQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS GRFHYGSAFGEPS
Sbjct: 909  TIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPS 968

Query: 2912 GHADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQAR 3091
            GHADKVE ISK+LV HGFSYSGKDFIYSGITGCPLQ YIFMGPIYYQKLKHMVLDKM AR
Sbjct: 969  GHADKVETISKTLVKHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1028

Query: 3092 GNGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKC 3271
            G+GP V++TRQPT GRA+ GG+RVGEMERDCLIAYGASMLIFERLM+SSDPFEVQVCR C
Sbjct: 1029 GSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVC 1088

Query: 3272 GLLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 3430
            GLLGYYN+KLK GICS+CKNG+N+ST+KLPYACKLL QELQ+MN+VPRLKL E
Sbjct: 1089 GLLGYYNHKLKIGICSTCKNGDNISTMKLPYACKLLFQELQAMNVVPRLKLTE 1141


>ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citrus clementina]
            gi|557534507|gb|ESR45625.1| hypothetical protein
            CICLE_v10000078mg [Citrus clementina]
          Length = 1149

 Score = 1853 bits (4799), Expect = 0.0
 Identities = 910/1149 (79%), Positives = 1022/1149 (88%), Gaps = 6/1149 (0%)
 Frame = +2

Query: 2    VKEKGKNKFPPSSLKHSDIAQPFKPPPAVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGI 181
            V+E  K++  P   K   +A P K    V+KFQL+PEFLKVRGLVKQHLDSFNYFVN GI
Sbjct: 6    VEESPKDEQLPDKQK---LAAPVKS--VVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 60

Query: 182  KKIVRANQRIESRVDKSIYLRFKDIRIGEPSVVADGVEEKLNPHLCRLSDITYGAPILVD 361
            +KIVRAN RI S +D SI+LRFKD+RIG+PS+  DGV EKLNPH+CRLSD+TY APILV+
Sbjct: 61   RKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVN 120

Query: 362  IEYIHGSHIQKTTAHKNNVVIGRLPIMLRSCFCVLYQKDEAALAKLGECPLDPGGYFIIK 541
            IEY+ GSH +KTT  KN+VVIGR+PIMLRSC CVLY KDEA LA+LGECPLDPGGYFIIK
Sbjct: 121  IEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180

Query: 542  GTEKVLLIQEQLSKNRIIIDTDKKGRVNASVMSSTETVKSKTNIFIEKEKIYVQLNIFGN 721
            GTEKVLLIQEQLSKNR+IIDTDKKG +NASV SSTETVKSKT I +EK K+Y+ LN F  
Sbjct: 181  GTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVK 240

Query: 722  KGVPIMVVMKAMGMENDQEVVQMVGRDPRFSKLLLPSIEECRAHGIDSQQKALEFLDRKI 901
            K +PIMVVMKAMGME+DQEVVQMVGRDPR+S LLLPSIEEC    I +Q+KALE+L+ K+
Sbjct: 241  K-IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKV 299

Query: 902  SKGPAYGGSSEKDNRVMKALREVFIGHVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMD 1081
             +       ++++ R    LR+VF+ +V V+ NN RPKC Y AVM+RRM+EA++NKD MD
Sbjct: 300  KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359

Query: 1082 DKDYVGNKRLELSGQMVSLLFEDLFKTMIGEVIKTMDAILAKPSRSSRLDPSQLIARNNI 1261
            DKDYVGNKRLELSGQ+VSLLFEDLFKTMI EV KT+D IL+KPSRSSR D SQ I R++I
Sbjct: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI 419

Query: 1262 TAGLERTLSTGQFDIKRFRLHRSGMTQPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRAL 1441
            T GLERTLSTG FD+KRF++HR GMTQ L RLSFIG+LGHMT++ PQFEKSRKVSGPRAL
Sbjct: 420  TVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479

Query: 1442 QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEEL 1621
            QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPL+S+CYCLGVEDLELLSGEEL
Sbjct: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539

Query: 1622 HTPNSFLIVFNGLILGKHRRPQRFANALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGR 1801
            H PNSFL++FNGLILGKHRRP+ FA+ +RKLRRAGKIGEFVSV+VNEKQRCVYIASDGGR
Sbjct: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGR 599

Query: 1802 VCRPLVIADKGISRIKEHHMRELLDGVRTFDDFLREGLIEYLDVNEENNALIALYEGEAT 1981
            VCRPLVIADKGISRIKEHHM+EL DGVR+FDDFLREGLIEYLDVNEENNALIALYEG+AT
Sbjct: 600  VCRPLVIADKGISRIKEHHMKELSDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDAT 659

Query: 1982 RDTTHIEIEPLTILGVIAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYL 2161
             DTTHIEIEP TILGVIAGLIP+PHHNQSPRNTYQCAMGKQAMGNIA+NQLCRMDSLLYL
Sbjct: 660  PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYL 719

Query: 2162 LVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIV 2341
            LVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIV
Sbjct: 720  LVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV 779

Query: 2342 MKKMKVVNEKYENNTSDRILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPV 2512
            +KK   +N+KY N+TSDRILRP R    +++MQILDDDG+AAPGEII+ ND+Y+NK+SP+
Sbjct: 780  VKKYTAINQKYANSTSDRILRPDRTGPGSERMQILDDDGLAAPGEIIKPNDVYINKESPL 839

Query: 2513 NTRDTVVR---GVECQYKSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPE 2683
             TR +++      + +Y+S  Q +KGP+GETCVVDRVALCSD+N +LCI F+IRHTRRPE
Sbjct: 840  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 899

Query: 2684 VGDKFSSRHGQKGVCGTIIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 2863
            +GDKFSSRHGQKGVCGTI+QQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLGGKAG
Sbjct: 900  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 959

Query: 2864 VSNGRFHYGSAFGEPSGHADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPI 3043
            VS GRFHYGSAFGEPSGHAD VE IS++LV HGFSY+GKD IYSGITGCPLQ YIFMGPI
Sbjct: 960  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1019

Query: 3044 YYQKLKHMVLDKMQARGNGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFER 3223
            YYQKLKHMVLDKM ARG+GP V++TRQPT GRA+ GG+RVGEMERDCLIAYGASMLIFER
Sbjct: 1020 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1079

Query: 3224 LMLSSDPFEVQVCRKCGLLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMN 3403
            LM+SSDPFEVQVCR CGLLGYYN+KLKAGICS+CKNG N+S++KLPYACKLLIQELQSMN
Sbjct: 1080 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGNNISSMKLPYACKLLIQELQSMN 1139

Query: 3404 IVPRLKLVE 3430
            IVPRLKL E
Sbjct: 1140 IVPRLKLAE 1148


>ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Citrus sinensis] gi|568883651|ref|XP_006494573.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Citrus sinensis]
          Length = 1149

 Score = 1852 bits (4797), Expect = 0.0
 Identities = 905/1131 (80%), Positives = 1015/1131 (89%), Gaps = 6/1131 (0%)
 Frame = +2

Query: 56   IAQPFKPPPAVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSI 235
            +A P K    V+KFQL+PEFLKVRGLVKQHLDSFNYFVN GI+KIVRAN RI S +D SI
Sbjct: 21   LAAPVKS--VVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78

Query: 236  YLRFKDIRIGEPSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNN 415
            +LRFKD+RIG+PS+  DGV EKLNPH+CRLSD+TY APILV+IEY+ GSH +KTT  KN+
Sbjct: 79   FLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND 138

Query: 416  VVIGRLPIMLRSCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRII 595
            VVIGR+PIMLRSC CVLY KDEA LA+LGECPLDPGGYFIIKGTEKVLLIQEQLSKNR+I
Sbjct: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198

Query: 596  IDTDKKGRVNASVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQ 775
            IDTDKKG +NASV SSTETVKSKT I +EK K+Y+ LN F  K +PIMVVMKAMG+E+DQ
Sbjct: 199  IDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK-IPIMVVMKAMGIESDQ 257

Query: 776  EVVQMVGRDPRFSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMK 955
            EVVQMVGRDPR+S LLLPSIEEC    I +Q+KALE+L+ K+ +       ++++ R   
Sbjct: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFS 317

Query: 956  ALREVFIGHVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVS 1135
             LR+VF+ +V V+ NN RPKC Y AVM+RRM+EA++NKD MDDKDYVGNKRLELSGQ+VS
Sbjct: 318  ILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVS 377

Query: 1136 LLFEDLFKTMIGEVIKTMDAILAKPSRSSRLDPSQLIARNNITAGLERTLSTGQFDIKRF 1315
            LLFEDLFKTMI EV KT+D IL+KPSRSSR D SQ I R++IT GLERTLSTG FD+KRF
Sbjct: 378  LLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRF 437

Query: 1316 RLHRSGMTQPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 1495
            ++HR GMTQ L RLSFIG+LGHMT++ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA
Sbjct: 438  KMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 497

Query: 1496 CGLVKNLALMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKH 1675
            CGLVKNLALMTHVTTDEEEGPL+S+CYCLGVEDLELLSGEELH PNSFL++FNGLILGKH
Sbjct: 498  CGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKH 557

Query: 1676 RRPQRFANALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH 1855
            RRP+ FA+ +RKLRRAGKIGEFVSV+VNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH
Sbjct: 558  RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH 617

Query: 1856 HMRELLDGVRTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGVIA 2035
            HM+ELLDGVR+FDDFLREGLIEYLDVNEENNALIALYEG+AT DTTHIEIEP TILGVIA
Sbjct: 618  HMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIA 677

Query: 2036 GLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 2215
            GLIP+PHHNQSPRNTYQCAMGKQAMGNIA+NQLCRMDSLLYLLVYPQRPLLTTRTIELVG
Sbjct: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737

Query: 2216 YDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTSDR 2395
            YDKLGAGQNATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIV+KK   +N+KY N+TSDR
Sbjct: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797

Query: 2396 ILRPQRDN---DKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVR---GVECQYK 2557
            ILRP R     ++MQILDDDG+AAPGEII+ ND+Y+NK+SP+ TR +++      + +Y+
Sbjct: 798  ILRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYR 857

Query: 2558 STFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGTI 2737
            S  Q +KGP+GETCVVDRVALCSD+N +LCI F+IRHTRRPE+GDKFSSRHGQKGVCGTI
Sbjct: 858  SARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTI 917

Query: 2738 IQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSGH 2917
            +QQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS GRFHYGSAFGEPSGH
Sbjct: 918  VQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGH 977

Query: 2918 ADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARGN 3097
            AD VE IS++LV HGFSY+GKD IYSGITGCPLQ YIFMGPIYYQKLKHMVLDKM ARG+
Sbjct: 978  ADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS 1037

Query: 3098 GPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCGL 3277
            GP V++TRQPT GRA+ GG+RVGEMERDCLIAYGASMLIFERLM+SSDPFEVQVCR CGL
Sbjct: 1038 GPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGL 1097

Query: 3278 LGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 3430
            LGYYN+KLKAGICS+CKNG+N+S++KLPYACKLLIQELQSMNIVPRLKL E
Sbjct: 1098 LGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1148


>ref|XP_007010799.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|508727712|gb|EOY19609.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao]
          Length = 1158

 Score = 1842 bits (4772), Expect = 0.0
 Identities = 908/1132 (80%), Positives = 1007/1132 (88%), Gaps = 7/1132 (0%)
 Frame = +2

Query: 56   IAQPFKPPPAVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSI 235
            +A P K   AV+KFQL+PEFLKVRGLVKQHLDSFNYFVN GIKKIVRAN RI S VD SI
Sbjct: 29   LAAPIKS--AVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVDPSI 86

Query: 236  YLRFKDIRIGEPSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNN 415
            YLRFKD+RIGEPS+  + V EK+NPH CRLSD+TY API V+IEYI GSH QKT   KN+
Sbjct: 87   YLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKND 146

Query: 416  VVIGRLPIMLRSCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRII 595
            +VIGR+PIMLRSC CVLY KDEA LA+LGECPLDPGGYF+IKG EKV+LIQEQLSKNRII
Sbjct: 147  LVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNRII 206

Query: 596  IDTDKKGRVNASVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQ 775
            ID DKKG +NASV SS+E  KSKT I +EKEKIY+ LN F  K +PIMVVMKAMGME+DQ
Sbjct: 207  IDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKK-IPIMVVMKAMGMESDQ 265

Query: 776  EVVQMVGRDPRFSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMK 955
            EVVQMVGRDP ++ +LLPSIEEC   GI +Q++ALE+L+ K+ +    G +SEK+ R + 
Sbjct: 266  EVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALS 325

Query: 956  ALREVFIGHVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVS 1135
             LR+VF+ +V V  NN RPKCLY AVM+RRM+EAI+NKD MDDKDYVGNKRLELSGQ++S
Sbjct: 326  ILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLIS 385

Query: 1136 LLFEDLFKTMIGEVIKTMDAILAKPSRSSRLDPSQLI-ARNNITAGLERTLSTGQFDIKR 1312
            LLFEDLFKT I EV K +D +L+KPSRSS LDPSQ + +R  IT GLERTLSTG FDIKR
Sbjct: 386  LLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKR 445

Query: 1313 FRLHRSGMTQPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 1492
            F++HR GMTQ L RLSFIG+LG+MTK+ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE
Sbjct: 446  FKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 505

Query: 1493 ACGLVKNLALMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGK 1672
            ACGLVKNLALMTHVTTDE+EGPL+S+CYCLGVEDLELLSGEELHTPNSFL++ NGLILGK
Sbjct: 506  ACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGK 565

Query: 1673 HRRPQRFANALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 1852
            HRRPQ FA A+RKLRRAGK+GEFVSV+VNEKQRCVYIASDGGRVCRPLVIADKG+SRIKE
Sbjct: 566  HRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKE 625

Query: 1853 HHMRELLDGVRTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGVI 2032
            HHM+ELLDGVRTFDDFLR+GLIEYLDVNEENNALIALYEGEAT +TTHIEIEP TILGV 
Sbjct: 626  HHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVC 685

Query: 2033 AGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELV 2212
            AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMD+LLYLLVYPQRPLLTTRTIELV
Sbjct: 686  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELV 745

Query: 2213 GYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTSD 2392
            GYDKLGAGQNATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIVMK+   VN+KYE   SD
Sbjct: 746  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGASD 805

Query: 2393 RILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRG---VECQY 2554
            RILRPQR    +++MQILDDDGIA PGEIIR NDIY+NK+S ++TR + V      +  Y
Sbjct: 806  RILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSESLPDSAY 865

Query: 2555 KSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGT 2734
            +   Q +KGPEGE+CVVDRVALC+DRN+NL I F+IRHTRRPEVGDKFSSRHGQKGVCGT
Sbjct: 866  RPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQKGVCGT 925

Query: 2735 IIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSG 2914
            IIQQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS GRFHYGSAFGEPSG
Sbjct: 926  IIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSG 985

Query: 2915 HADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARG 3094
            HAD+VE IS++L+ HGFSY+GKDFIYSGITGCPLQ YIFMGPIYYQKLKHMVLDKM ARG
Sbjct: 986  HADRVEAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARG 1045

Query: 3095 NGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCG 3274
            NGP V++TRQPT GRA+ GG+RVGEMERDCLIAYGASMLIFERLM+SSDPFEVQVCRKCG
Sbjct: 1046 NGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRKCG 1105

Query: 3275 LLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 3430
            LLGYY++KLK GICSSCKNG+NVST+KLPYACKLLIQELQSMNIVPRLKL E
Sbjct: 1106 LLGYYSHKLKTGICSSCKNGDNVSTMKLPYACKLLIQELQSMNIVPRLKLSE 1157


>ref|XP_007010801.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
            gi|508727714|gb|EOY19611.1| DNA-directed RNA polymerase
            isoform 3 [Theobroma cacao]
          Length = 1153

 Score = 1829 bits (4737), Expect = 0.0
 Identities = 904/1132 (79%), Positives = 1002/1132 (88%), Gaps = 7/1132 (0%)
 Frame = +2

Query: 56   IAQPFKPPPAVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSI 235
            +A P K   AV+KFQL+PEFLKVRGLVKQHLDSFNYFVN GIKKIVRAN RI S VD SI
Sbjct: 29   LAAPIKS--AVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVDPSI 86

Query: 236  YLRFKDIRIGEPSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNN 415
            YLRFKD+RIGEPS+  + V EK+NPH CRLSD+TY API V+IEYI GSH QKT   KN+
Sbjct: 87   YLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKND 146

Query: 416  VVIGRLPIMLRSCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRII 595
            +VIGR+PIMLRSC CVLY KDEA LA+LGECPLDPGGYF+IKG EK     EQLSKNRII
Sbjct: 147  LVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEK-----EQLSKNRII 201

Query: 596  IDTDKKGRVNASVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQ 775
            ID DKKG +NASV SS+E  KSKT I +EKEKIY+ LN F  K +PIMVVMKAMGME+DQ
Sbjct: 202  IDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKK-IPIMVVMKAMGMESDQ 260

Query: 776  EVVQMVGRDPRFSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMK 955
            EVVQMVGRDP ++ +LLPSIEEC   GI +Q++ALE+L+ K+ +    G +SEK+ R + 
Sbjct: 261  EVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALS 320

Query: 956  ALREVFIGHVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVS 1135
             LR+VF+ +V V  NN RPKCLY AVM+RRM+EAI+NKD MDDKDYVGNKRLELSGQ++S
Sbjct: 321  ILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLIS 380

Query: 1136 LLFEDLFKTMIGEVIKTMDAILAKPSRSSRLDPSQLI-ARNNITAGLERTLSTGQFDIKR 1312
            LLFEDLFKT I EV K +D +L+KPSRSS LDPSQ + +R  IT GLERTLSTG FDIKR
Sbjct: 381  LLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKR 440

Query: 1313 FRLHRSGMTQPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 1492
            F++HR GMTQ L RLSFIG+LG+MTK+ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE
Sbjct: 441  FKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 500

Query: 1493 ACGLVKNLALMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGK 1672
            ACGLVKNLALMTHVTTDE+EGPL+S+CYCLGVEDLELLSGEELHTPNSFL++ NGLILGK
Sbjct: 501  ACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGK 560

Query: 1673 HRRPQRFANALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 1852
            HRRPQ FA A+RKLRRAGK+GEFVSV+VNEKQRCVYIASDGGRVCRPLVIADKG+SRIKE
Sbjct: 561  HRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKE 620

Query: 1853 HHMRELLDGVRTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGVI 2032
            HHM+ELLDGVRTFDDFLR+GLIEYLDVNEENNALIALYEGEAT +TTHIEIEP TILGV 
Sbjct: 621  HHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVC 680

Query: 2033 AGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELV 2212
            AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMD+LLYLLVYPQRPLLTTRTIELV
Sbjct: 681  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELV 740

Query: 2213 GYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTSD 2392
            GYDKLGAGQNATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIVMK+   VN+KYE   SD
Sbjct: 741  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGASD 800

Query: 2393 RILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRG---VECQY 2554
            RILRPQR    +++MQILDDDGIA PGEIIR NDIY+NK+S ++TR + V      +  Y
Sbjct: 801  RILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSESLPDSAY 860

Query: 2555 KSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGT 2734
            +   Q +KGPEGE+CVVDRVALC+DRN+NL I F+IRHTRRPEVGDKFSSRHGQKGVCGT
Sbjct: 861  RPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQKGVCGT 920

Query: 2735 IIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSG 2914
            IIQQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS GRFHYGSAFGEPSG
Sbjct: 921  IIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSG 980

Query: 2915 HADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARG 3094
            HAD+VE IS++L+ HGFSY+GKDFIYSGITGCPLQ YIFMGPIYYQKLKHMVLDKM ARG
Sbjct: 981  HADRVEAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARG 1040

Query: 3095 NGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCG 3274
            NGP V++TRQPT GRA+ GG+RVGEMERDCLIAYGASMLIFERLM+SSDPFEVQVCRKCG
Sbjct: 1041 NGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRKCG 1100

Query: 3275 LLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 3430
            LLGYY++KLK GICSSCKNG+NVST+KLPYACKLLIQELQSMNIVPRLKL E
Sbjct: 1101 LLGYYSHKLKTGICSSCKNGDNVSTMKLPYACKLLIQELQSMNIVPRLKLSE 1152


>ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
            gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase
            III subunit, putative [Ricinus communis]
          Length = 1139

 Score = 1801 bits (4664), Expect = 0.0
 Identities = 889/1119 (79%), Positives = 988/1119 (88%), Gaps = 3/1119 (0%)
 Frame = +2

Query: 83   AVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSIYLRFKDIRI 262
            AV+KFQL+PEFLKVRGLVKQHLDSFNYFVNIGIKKIVRAN RI S VD  IYLRFKD+RI
Sbjct: 34   AVDKFQLLPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANDRIVSTVDPGIYLRFKDVRI 93

Query: 263  GEPSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIM 442
            G PS + DGV E+L+PH+CRLSD TY APILV++EYI+GSH QKT   KN+VVIGR+PIM
Sbjct: 94   GTPSDIMDGVSEQLSPHMCRLSDKTYAAPILVNVEYIYGSHDQKTRVEKNDVVIGRMPIM 153

Query: 443  LRSCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRV 622
            LRS  CVLY KDEA LA+LGECPLDPGGYF+IKGTEKV+LIQEQLSKNRIIIDTDKKG +
Sbjct: 154  LRSRSCVLYGKDEAELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDKKGNI 213

Query: 623  NASVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRD 802
            NASV SSTE  KSKT I +EKEK+Y+ LN F  K +PIMVV+KAMGME+DQEVVQMVGRD
Sbjct: 214  NASVTSSTEATKSKTIIQMEKEKMYLCLNQFVKK-IPIMVVIKAMGMESDQEVVQMVGRD 272

Query: 803  PRFSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIGH 982
            PR+S LLLPSIEEC    I +QQKALE+LD K             +NR +  LR+VF+ +
Sbjct: 273  PRYSALLLPSIEECAGLSIYTQQKALEYLDGK-------------ENRALTILRDVFLAN 319

Query: 983  VVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFKT 1162
            V V++NN RPKCLY AVM+RRMMEA++NKD MDDKDYVGNKRLELSGQ++SLLFEDLFKT
Sbjct: 320  VPVHKNNFRPKCLYVAVMLRRMMEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKT 379

Query: 1163 MIGEVIKTMDAILAKPSRSSRLDPSQLIARNNITAGLERTLSTGQFDIKRFRLHRSGMTQ 1342
            MI EV +T+D +L K +RSSR D +Q I R+NIT GLERTLSTG FD+KRF++HR GMTQ
Sbjct: 380  MITEVQRTIDTVLTKQNRSSRFDLAQYIVRDNITNGLERTLSTGNFDVKRFKMHRKGMTQ 439

Query: 1343 PLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLAL 1522
             LVRLS+I SLG MT++ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLAL
Sbjct: 440  VLVRLSYIASLGMMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLAL 499

Query: 1523 MTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFANA 1702
            MTHVTTD+EEGPL+S+CYCLGVEDLELLSGEELHTPNSFL++FNGLILGKHRRPQ F N+
Sbjct: 500  MTHVTTDDEEGPLISLCYCLGVEDLELLSGEELHTPNSFLVIFNGLILGKHRRPQYFVNS 559

Query: 1703 LRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDGV 1882
            +RKLRRAGKIGEFVSV+VNEKQR VY+ASDGGRVCRPLVIAD+G+SRIKEHHM+EL DGV
Sbjct: 560  MRKLRRAGKIGEFVSVFVNEKQRAVYLASDGGRVCRPLVIADRGVSRIKEHHMKELRDGV 619

Query: 1883 RTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGVIAGLIPFPHHN 2062
            RTFDDFLR+GLIEYLDVNEENNAL+ALYEGEAT +TTHIEIEP TILGV AGLIPFPHHN
Sbjct: 620  RTFDDFLRDGLIEYLDVNEENNALVALYEGEATPETTHIEIEPFTILGVCAGLIPFPHHN 679

Query: 2063 QSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN 2242
            QSPRNTYQCAMGKQAMGNIAYNQL RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN
Sbjct: 680  QSPRNTYQCAMGKQAMGNIAYNQLFRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN 739

Query: 2243 ATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTSDRILRPQRDND 2422
            ATVAVMSYSGYDIEDAIV NKA LDRGFGRCIVMKK   + +KYEN  SDRILRP R  +
Sbjct: 740  ATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYPAIRQKYENGASDRILRPDRTVE 799

Query: 2423 KMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRGV---ECQYKSTFQKFKGPEGE 2593
            + ++LD DG+AAPGEII+ +DIY+ K+ P++T   V         +Y+ +   +KGPEGE
Sbjct: 800  RERVLDYDGLAAPGEIIKPSDIYVKKECPIDTMGPVKSSAALENIKYRPSPLSYKGPEGE 859

Query: 2594 TCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSEKG 2773
            + V+DRVAL SDRNNNLCI  MIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSE+G
Sbjct: 860  SPVIDRVALSSDRNNNLCIKVMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERG 919

Query: 2774 ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSGHADKVEVISKSLV 2953
            ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS GRFHYGSAFGEPSGHAD VE IS++LV
Sbjct: 920  ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVEAISETLV 979

Query: 2954 DHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARGNGPHVLMTRQPTS 3133
            + GFSY+GKD IYSGITGCPLQ YIFMGPIYYQKLKHMVLDKM ARGNGP V++TRQPT 
Sbjct: 980  NRGFSYNGKDIIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMLTRQPTE 1039

Query: 3134 GRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCGLLGYYNYKLKAGI 3313
            GRA+ GG+RVGEMERDCLIAYGASMLIFERLM+SSDPFEVQVCR CGLLGY+N KL+AGI
Sbjct: 1040 GRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRVCGLLGYFNQKLRAGI 1099

Query: 3314 CSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 3430
            CS+CKNG+N+ST+KLPYACKLLIQELQSMNIVPRLKL E
Sbjct: 1100 CSTCKNGDNISTMKLPYACKLLIQELQSMNIVPRLKLAE 1138


>ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cucumis
            sativus]
          Length = 1158

 Score = 1782 bits (4615), Expect = 0.0
 Identities = 880/1134 (77%), Positives = 988/1134 (87%), Gaps = 7/1134 (0%)
 Frame = +2

Query: 50   SDIAQPFKPPP---AVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESR 220
            SDI + F   P   AV+KFQL+PEFLKVRGLVKQHLDSFNYFVN  IKKIV+AN RIES 
Sbjct: 24   SDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESS 83

Query: 221  VDKSIYLRFKDIRIGEPSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTT 400
             D SIYLRF D+RIGEPSV  + V E +NPH+CRLSD+TY APILVDIEYI  SH QK  
Sbjct: 84   TDPSIYLRFLDVRIGEPSVTVNAVSETINPHMCRLSDLTYAAPILVDIEYIEESHAQKAP 143

Query: 401  AHKNNVVIGRLPIMLRSCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLS 580
              K +VVIGR+PIMLRS  CVL+ KDEA LA+LGECPLDPGGYFIIKGTEKV+LIQEQLS
Sbjct: 144  REKKDVVIGRMPIMLRSRCCVLHGKDEAELARLGECPLDPGGYFIIKGTEKVVLIQEQLS 203

Query: 581  KNRIIIDTDKKGRVNASVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMG 760
            KNRIIIDTDKKG +NASV SSTE  KSKT I +E EKIY+QLNIF    +PIMVV+KAMG
Sbjct: 204  KNRIIIDTDKKGNINASVTSSTEATKSKTVIKMENEKIYLQLNIFTTPKIPIMVVLKAMG 263

Query: 761  MENDQEVVQMVGRDPRFSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKD 940
            ME+ QEVVQMVGRDPR+  LLLPSIEEC    I +Q++ALE+L+ K+ K        EK+
Sbjct: 264  MESIQEVVQMVGRDPRYGALLLPSIEECAKEKIYTQEQALEYLETKVKKFQFASAPPEKE 323

Query: 941  NRVMKALREVFIGHVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELS 1120
             R +  LR+VF+ +V V +NN  PKC+Y AVM+RRMM+AI++KD MDDKDYVGNKRLELS
Sbjct: 324  GRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMMDAILSKDAMDDKDYVGNKRLELS 383

Query: 1121 GQMVSLLFEDLFKTMIGEVIKTMDAILAKPSRSSRLDPSQLIARNNITAGLERTLSTGQF 1300
            GQ++SLLFEDLFKTM+ EV KT+D +L K SRSSR D SQ +  N I+ GLERTLSTG +
Sbjct: 384  GQLISLLFEDLFKTMVSEVKKTIDKLLGKHSRSSRFDFSQHLNSNIISFGLERTLSTGNW 443

Query: 1301 DIKRFRLHRSGMTQPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDT 1480
            D+KRFR+HR GM+Q L RLSFI ++GH+T++ PQFEKSRKVSGPRALQPSQWGMLCPCDT
Sbjct: 444  DVKRFRMHRKGMSQVLARLSFISTMGHVTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 503

Query: 1481 PEGEACGLVKNLALMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGL 1660
            PEGEACGLVKNLALMTHVTTD+EEGPL+S+CYCLGVEDLELLS EELHTPNSFL++FNG 
Sbjct: 504  PEGEACGLVKNLALMTHVTTDQEEGPLISLCYCLGVEDLELLSAEELHTPNSFLVIFNGR 563

Query: 1661 ILGKHRRPQRFANALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGIS 1840
            ILGKHRRPQ FA  +R LRRAGKIGEFVSV+VNEKQ CVYIASDGGRVCRPLVIADKG+S
Sbjct: 564  ILGKHRRPQYFATGMRMLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVS 623

Query: 1841 RIKEHHMRELLDGVRTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTI 2020
            RIKE+HM+EL DGVRTFDDFLR+GLIEYLDVNEENNALIALYEGEAT +TTHIEIEP TI
Sbjct: 624  RIKEYHMKELSDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTI 683

Query: 2021 LGVIAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRT 2200
            LGV+AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD+LLYLLVYPQRPLLTT+T
Sbjct: 684  LGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLVYPQRPLLTTKT 743

Query: 2201 IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYEN 2380
            IELVGYDKLGAGQNATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIV KK   VN+KYEN
Sbjct: 744  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVFKKYSSVNQKYEN 803

Query: 2381 NTSDRILRPQRDND---KMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRGV-EC 2548
            NT+DRI+RP R+ D    MQILDDDG+AAPGEIIR NDIY+NKQSP+  + + + G+ + 
Sbjct: 804  NTADRIVRPNRNEDFTGNMQILDDDGLAAPGEIIRPNDIYVNKQSPIIMKGSPLPGIPDN 863

Query: 2549 QYKSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVC 2728
             Y+   Q FKG EGE  VVDRVAL +D+N+ LCI F+IR TRRPE+GDKFSSRHGQKGVC
Sbjct: 864  AYRPCRQIFKGSEGEPTVVDRVALSTDKNDCLCIKFLIRQTRRPELGDKFSSRHGQKGVC 923

Query: 2729 GTIIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEP 2908
            GTI+QQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS GRFHYGSAFGEP
Sbjct: 924  GTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP 983

Query: 2909 SGHADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQA 3088
            SGHADKV+ IS++L+  GFSY+GKDF+YSGITGCPLQ YIFMGPIYYQKLKHMVLDKM A
Sbjct: 984  SGHADKVDAISETLIKRGFSYNGKDFLYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHA 1043

Query: 3089 RGNGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRK 3268
            RG+GP V++TRQPT GRA+ GG+RVGEMERDCLIAYGASMLI+ERLM+SSDPFEVQVCR 
Sbjct: 1044 RGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRV 1103

Query: 3269 CGLLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 3430
            CGLLGYYN+KLK GICSSCKNG+N+ST+KLPYACKLLIQELQSMNIVPRLKL E
Sbjct: 1104 CGLLGYYNHKLKTGICSSCKNGDNISTMKLPYACKLLIQELQSMNIVPRLKLAE 1157


>ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Solanum tuberosum] gi|565393087|ref|XP_006362215.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Solanum tuberosum]
          Length = 1153

 Score = 1764 bits (4569), Expect = 0.0
 Identities = 882/1133 (77%), Positives = 983/1133 (86%), Gaps = 8/1133 (0%)
 Frame = +2

Query: 56   IAQPFKPPPAVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSI 235
            +A P K    V+K+QLVPEFLKVRGLVKQHLDSFNYFV   IKKIVRANQ I S +D +I
Sbjct: 23   LASPIKN--LVDKYQLVPEFLKVRGLVKQHLDSFNYFVRTEIKKIVRANQEIRSILDPNI 80

Query: 236  YLRFKDIRIGEPSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNN 415
            YLR++D+ IGEPS+V D V EKL P  CRLSD TY API V IEY  GSH Q + + K N
Sbjct: 81   YLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRTYAAPIYVTIEYTTGSHGQTSVSTKKN 140

Query: 416  VVIGRLPIMLRSCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRII 595
            V+IGR+PIMLRS  CVLY KDE  LA+LGECPLDPGGYF+IKGTEKV+LIQEQLSKNRII
Sbjct: 141  VIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRII 200

Query: 596  IDTDKKGRVNASVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQ 775
            IDTDKKG V ASV SSTE  KSKT I +EKEK+Y++LN+F  K VPIMVVMKAMGME+DQ
Sbjct: 201  IDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFKTK-VPIMVVMKAMGMESDQ 259

Query: 776  EVVQMVGRDPRFSKLLLPSIEECRAHGIDSQQKALEFLDR-KISKGPAYG-GSSEKDNRV 949
            EVVQM+GRDPRFS LLLPSIEEC    + +Q +ALEFL+  K+ K P+Y  G  EK  R 
Sbjct: 260  EVVQMIGRDPRFSALLLPSIEECADLKLYTQHQALEFLESDKMLKMPSYSTGPVEKGARA 319

Query: 950  MKALREVFIGHVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQM 1129
            +  LR++F+ +V V+Q+N R KC+Y AVM+RRMMEAI+NKD MDDKDYVGNKRLELSGQ+
Sbjct: 320  LSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSGQL 379

Query: 1130 VSLLFEDLFKTMIGEVIKTMDAILAKPSRSSRLDPSQLIARNNITAGLERTLSTGQFDIK 1309
            +SLLFEDLFKTM  E  +T+D +LA+PSRSSRLD SQ I +++IT GLERTLSTG +D+K
Sbjct: 380  LSLLFEDLFKTMNDEARRTIDTLLARPSRSSRLDISQYIVKDSITMGLERTLSTGNWDVK 439

Query: 1310 RFRLHRSGMTQPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 1489
            RFR+HR GMTQ + RLS+IGSLGHMTKI PQFEKSRKVSGPRALQPSQ+GMLCPCDTPEG
Sbjct: 440  RFRMHRKGMTQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQFGMLCPCDTPEG 499

Query: 1490 EACGLVKNLALMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILG 1669
            EACGLVKNLALMTHVTTDE+E P++S+CYCLGVEDLE LS EELH P S+LI  NGLILG
Sbjct: 500  EACGLVKNLALMTHVTTDEDERPIMSLCYCLGVEDLEQLSPEELHMPTSYLITLNGLILG 559

Query: 1670 KHRRPQRFANALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 1849
            KH+ PQRFANA+R+LRRAGKIGEFVS++VNEKQRCVYIASDGGRVCRPLVIADKG+SRIK
Sbjct: 560  KHKSPQRFANAMRRLRRAGKIGEFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIK 619

Query: 1850 EHHMRELLDGVRTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGV 2029
            EHHMREL DGVR FD FL++GLIEYLDVNEENN LIALYE EAT +TTHIEIEP TILGV
Sbjct: 620  EHHMRELRDGVRDFDSFLKDGLIEYLDVNEENNTLIALYEKEATPETTHIEIEPFTILGV 679

Query: 2030 IAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIEL 2209
             AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD LLYLLVYPQRPLLTTRTIEL
Sbjct: 680  CAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDGLLYLLVYPQRPLLTTRTIEL 739

Query: 2210 VGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTS 2389
            VGYDKLGAGQNATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIVMKK   + +KYEN TS
Sbjct: 740  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKYSAICQKYENGTS 799

Query: 2390 DRILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRGV---ECQ 2551
            DRI++PQR   + DKMQILDDDG+AAPGE IR +DIY+NK+SP  TR  +   +   +  
Sbjct: 800  DRIIKPQRQGFEADKMQILDDDGMAAPGETIRNHDIYINKESPTVTRTPITSPMGLPDSA 859

Query: 2552 YKSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCG 2731
            YK++ Q +KGPEGET VVDRVAL SDRNNNL I FMIRHTRRPE+GDKFSSRHGQKGVCG
Sbjct: 860  YKTSRQTYKGPEGETAVVDRVALYSDRNNNLSIKFMIRHTRRPEIGDKFSSRHGQKGVCG 919

Query: 2732 TIIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPS 2911
            TI+QQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFGEPS
Sbjct: 920  TIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGEPS 979

Query: 2912 GHADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQAR 3091
            GHAD V+ IS++LV HGFSY+GKDFIYSGITG PLQ YIFMGPIYYQKLKHMVLDKM AR
Sbjct: 980  GHADTVDSISETLVKHGFSYNGKDFIYSGITGMPLQAYIFMGPIYYQKLKHMVLDKMHAR 1039

Query: 3092 GNGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKC 3271
            G+GP V+MTRQPT GR++ GG+RVGEMERDCLIAYGASMLI+ERLM+SSDPFEVQVCRKC
Sbjct: 1040 GSGPRVMMTRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRKC 1099

Query: 3272 GLLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 3430
            GLLGYYNYKLK GICS CKNGEN+ST+KLPYACKLL QELQSMNIVPRLKL E
Sbjct: 1100 GLLGYYNYKLKTGICSMCKNGENISTMKLPYACKLLFQELQSMNIVPRLKLAE 1152


>ref|XP_004308665.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
            [Fragaria vesca subsp. vesca]
          Length = 1163

 Score = 1763 bits (4565), Expect = 0.0
 Identities = 868/1140 (76%), Positives = 987/1140 (86%), Gaps = 7/1140 (0%)
 Frame = +2

Query: 32   PSSLKHSDIAQPFKPPP---AVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRAN 202
            P  + H DI +     P   A +KF L+PEFLKVRGLVKQHLDSFNYFVN GIKKIVRAN
Sbjct: 25   PKQVHHMDIDKELLAAPIKSAKDKFALIPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRAN 84

Query: 203  QRIESRVDKSIYLRFKDIRIGEPSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGS 382
             RI S VD SI+LRF ++ I  PS+  DGV  ++ PH CRLSD+TY API VD+EY+ GS
Sbjct: 85   DRIVSGVDPSIWLRFNNVYIDRPSLTTDGVTTEIAPHTCRLSDMTYSAPIRVDVEYVEGS 144

Query: 383  HIQKTTAHKNNVVIGRLPIMLRSCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLL 562
            H QK  A +  + IGRLPIMLRSC C LY K E+ LA LGECPLDPGGYFIIKG EKVLL
Sbjct: 145  HDQKMIATRKGIEIGRLPIMLRSCCCTLYGKTESELATLGECPLDPGGYFIIKGNEKVLL 204

Query: 563  IQEQLSKNRIIIDTDKKGRVNASVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMV 742
            IQEQLSKNRIIID DKKG VNASV SS+ET+KSKT I +EK+KIY++LN F  K +PIMV
Sbjct: 205  IQEQLSKNRIIIDMDKKGNVNASVTSSSETIKSKTIIQMEKQKIYLELNQFSKK-IPIMV 263

Query: 743  VMKAMGMENDQEVVQMVGRDPRFSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYG 922
            VMKAMGM +DQEVVQMVGRDPR+  LL+PSIEEC   GI ++++AL +L+ K+ +     
Sbjct: 264  VMKAMGMTSDQEVVQMVGRDPRYGALLMPSIEECAKEGIYTKEQALLYLEPKVKRSMFDS 323

Query: 923  GSSEKDNRVMKALREVFIGHVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGN 1102
             SS+KD++VM  LR++FI +V V ++N RPKC+Y AVM+RR+M+AI+NKDTMDDKDYVGN
Sbjct: 324  ASSDKDSKVMAVLRDIFIANVPVRRSNFRPKCIYVAVMLRRIMDAILNKDTMDDKDYVGN 383

Query: 1103 KRLELSGQMVSLLFEDLFKTMIGEVIKTMDAILAKPSRSSRLDPSQLIARNNITAGLERT 1282
            KRLELSGQ +SLLFEDLFKTMI EV KT+D IL KPSRSSR D +Q I ++ I+ GLERT
Sbjct: 384  KRLELSGQSISLLFEDLFKTMISEVRKTVDNILTKPSRSSRFDLAQYIRKDQISLGLERT 443

Query: 1283 LSTGQFDIKRFRLHRSGMTQPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGM 1462
            LSTG FD+KRF++HR+GMTQ L RLSFIGSLG MT+ +PQFEKSRKVSGPRALQPSQWGM
Sbjct: 444  LSTGNFDLKRFKMHRTGMTQVLARLSFIGSLGQMTRTKPQFEKSRKVSGPRALQPSQWGM 503

Query: 1463 LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFL 1642
            LCPCDTPEGEACGLVKNLALM HVTTDEEEGPL+S+C CLGVEDLE LS EELH+PNSFL
Sbjct: 504  LCPCDTPEGEACGLVKNLALMAHVTTDEEEGPLISLCKCLGVEDLETLSAEELHSPNSFL 563

Query: 1643 IVFNGLILGKHRRPQRFANALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVI 1822
            ++FNG ILGKHR+PQR A A+RKLRRAGKIGEFVSV+VNEKQ CVYIASDGGRVCRPLVI
Sbjct: 564  VLFNGDILGKHRKPQRLATAMRKLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVI 623

Query: 1823 ADKGISRIKEHHMRELLDGVRTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIE 2002
            ADKGISR+KE+HM+EL  GVRTFDDFL +GLIEYLDVNE+NNALIALYE EAT +TTHIE
Sbjct: 624  ADKGISRVKEYHMQELNAGVRTFDDFLSDGLIEYLDVNEQNNALIALYEDEATTETTHIE 683

Query: 2003 IEPLTILGVIAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRP 2182
            IEP TILGVIAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL R+D LLYLLVYPQRP
Sbjct: 684  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRID-LLYLLVYPQRP 742

Query: 2183 LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVV 2362
            LLTT+TIELVG+DKLGAGQNATVAVMSYSGYDIEDAIV NK+ LDRGFGRCI+MKK  V 
Sbjct: 743  LLTTKTIELVGFDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCILMKKFVVA 802

Query: 2363 NEKYENNTSDRILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVV 2533
            N+ Y NNT DRI++P +   D+ KM++LDDDGIAAPGEII  NDIY+ KQ P+ TR  + 
Sbjct: 803  NQNYSNNTQDRIIKPNKDEVDSGKMRVLDDDGIAAPGEIITANDIYVKKQVPIVTRGAIR 862

Query: 2534 RGV-ECQYKSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRH 2710
             G+ +  Y+STFQ++KGP+GE+CVVD+VAL SD++NNLC+  +IRHTRRPEVGDKFSSRH
Sbjct: 863  SGLKDSDYRSTFQRYKGPDGESCVVDKVALFSDKHNNLCVKLLIRHTRRPEVGDKFSSRH 922

Query: 2711 GQKGVCGTIIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYG 2890
            GQKGVCGTI+QQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS GRFHYG
Sbjct: 923  GQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYG 982

Query: 2891 SAFGEPSGHADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMV 3070
            SAFGEPSGHADKVE IS++LV  GFSY GKD+I SGITGCPLQ YIFMGPIYYQKLKHMV
Sbjct: 983  SAFGEPSGHADKVEAISETLVRMGFSYDGKDYICSGITGCPLQAYIFMGPIYYQKLKHMV 1042

Query: 3071 LDKMQARGNGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFE 3250
            LDKM ARG+GP V +TRQPT G+A+ GG+RVGEMERDCLIAYGASML++ERLM+SSDPFE
Sbjct: 1043 LDKMHARGSGPRVSLTRQPTEGKARNGGLRVGEMERDCLIAYGASMLLYERLMISSDPFE 1102

Query: 3251 VQVCRKCGLLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 3430
            VQVCR CGLLGYYN+K+KAGICSSCKNG+N+ST+KLPYACKLLIQELQSMNIVPRLKL E
Sbjct: 1103 VQVCRVCGLLGYYNHKMKAGICSSCKNGDNISTMKLPYACKLLIQELQSMNIVPRLKLAE 1162


>ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum
            lycopersicum]
          Length = 1183

 Score = 1762 bits (4564), Expect = 0.0
 Identities = 877/1123 (78%), Positives = 980/1123 (87%), Gaps = 8/1123 (0%)
 Frame = +2

Query: 86   VNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSIYLRFKDIRIG 265
            V+K+QLVPEFLKVRGLVKQHLDSFNYFV   IKKIVRANQ I S +D +IYLR++D+ IG
Sbjct: 61   VDKYQLVPEFLKVRGLVKQHLDSFNYFVRTEIKKIVRANQEIRSTLDPNIYLRYRDVHIG 120

Query: 266  EPSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIML 445
            EPS+V D V EKL P  CRLSD TY API V I+Y  GSH Q + + K NV+IGR+PIML
Sbjct: 121  EPSMVFDAVTEKLCPQKCRLSDRTYAAPIYVTIDYTTGSHGQTSVSTKKNVIIGRMPIML 180

Query: 446  RSCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRVN 625
            RS  CVLY KDE  LA+LGECPLDPGGYF+IKGTEKV+LIQEQLSKNRIIIDTDKKG V 
Sbjct: 181  RSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDKKGSVQ 240

Query: 626  ASVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRDP 805
            ASV SSTE  KSKT I +EKEK+Y++LN+F  K VPIMVVMKAMGME+DQEVVQM+GRDP
Sbjct: 241  ASVTSSTEKTKSKTIIKMEKEKVYLELNMFKTK-VPIMVVMKAMGMESDQEVVQMIGRDP 299

Query: 806  RFSKLLLPSIEECRAHGIDSQQKALEFLDR-KISKGPAYG-GSSEKDNRVMKALREVFIG 979
            RFS LLLPSIEEC    + +QQ+ALEFL+  K+ K P+Y  G  EK  R +  LR++F+ 
Sbjct: 300  RFSALLLPSIEECADLKLYTQQQALEFLESDKMLKMPSYSTGPIEKGARALSILRDIFLA 359

Query: 980  HVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFK 1159
            +V V+Q+N R KC+Y AVM+RRMMEAI+NKD MDDKDYVGNKRLELSGQ++SLLFEDLFK
Sbjct: 360  NVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSGQLLSLLFEDLFK 419

Query: 1160 TMIGEVIKTMDAILAKPSRSSRLDPSQLIARNNITAGLERTLSTGQFDIKRFRLHRSGMT 1339
            TM  E  +T+D +LA+PSRSSRLD SQ I +++IT GLERTLSTG +D+KRFR+HR GMT
Sbjct: 420  TMNDEARRTIDTLLARPSRSSRLDISQYIIKDSITMGLERTLSTGNWDVKRFRMHRKGMT 479

Query: 1340 QPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 1519
            Q + RLS+IGSLGHMTKI PQFEKSRKVSGPRALQPSQ+GMLCPCDTPEGEACGLVKNLA
Sbjct: 480  QVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQFGMLCPCDTPEGEACGLVKNLA 539

Query: 1520 LMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFAN 1699
            LMTHVTTDE+E P++S+CYCLGVEDLE LS EELH P S+LI  NGLILGKH+ PQRFAN
Sbjct: 540  LMTHVTTDEDERPIMSLCYCLGVEDLEQLSPEELHMPTSYLITLNGLILGKHKSPQRFAN 599

Query: 1700 ALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDG 1879
            A+R+LRRAGK+GEFVS++VNEKQRCVYIASDGGRVCRPLVIADKG+SRIKEHHMREL DG
Sbjct: 600  AMRRLRRAGKVGEFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMRELRDG 659

Query: 1880 VRTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGVIAGLIPFPHH 2059
            +R FD FL++GLIEYLDVNEENN LIALYE EAT +TTHIEIEP TILGV AGLIP+PHH
Sbjct: 660  LRDFDSFLKDGLIEYLDVNEENNTLIALYEKEATPETTHIEIEPFTILGVCAGLIPYPHH 719

Query: 2060 NQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 2239
            NQSPRNTYQCAMGKQAMGNIAYNQL RMD LLYLLVYPQRPLLTTRTIELVGYDKLGAGQ
Sbjct: 720  NQSPRNTYQCAMGKQAMGNIAYNQLNRMDGLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 779

Query: 2240 NATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTSDRILRPQR-- 2413
            NATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIVMKK   + +KYEN TSDRI++PQR  
Sbjct: 780  NATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKYSAICQKYENGTSDRIIKPQRQG 839

Query: 2414 -DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRGV---ECQYKSTFQKFKG 2581
             + D+MQILDDDG+AAPGE IR +DIY+NK+SP  TR  V   +   +  YKS+ Q +KG
Sbjct: 840  PEADRMQILDDDGMAAPGETIRNHDIYINKESPTVTRTPVTSPMGLPDSAYKSSKQTYKG 899

Query: 2582 PEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPF 2761
            PEGET VVDRVAL SDRNNNL I FMIRHTRRPE+GDKFSSRHGQKGVCGTI+QQEDFPF
Sbjct: 900  PEGETAVVDRVALYSDRNNNLSIKFMIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPF 959

Query: 2762 SEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSGHADKVEVIS 2941
            SE+GICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFGEPSGHAD V+ IS
Sbjct: 960  SERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGEPSGHADTVDAIS 1019

Query: 2942 KSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARGNGPHVLMTR 3121
            ++LV HGFSY+GKDFIYSGITG PLQ YIFMGPIYYQKLKHMV+DKM ARG+GP V+MTR
Sbjct: 1020 ETLVKHGFSYNGKDFIYSGITGMPLQAYIFMGPIYYQKLKHMVVDKMHARGSGPRVMMTR 1079

Query: 3122 QPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCGLLGYYNYKL 3301
            QPT GR++ GG+RVGEMERDCLIAYGASMLI+ERLM+SSDPFEVQVCRKCGLLGYYNYKL
Sbjct: 1080 QPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRKCGLLGYYNYKL 1139

Query: 3302 KAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 3430
            K GICS CKNGEN+ST+KLPYACKLL QELQSMNIVPRLKL E
Sbjct: 1140 KTGICSMCKNGENISTMKLPYACKLLFQELQSMNIVPRLKLAE 1182


>ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutrema salsugineum]
            gi|557099252|gb|ESQ39616.1| hypothetical protein
            EUTSA_v10000748mg [Eutrema salsugineum]
          Length = 1164

 Score = 1756 bits (4547), Expect = 0.0
 Identities = 860/1136 (75%), Positives = 987/1136 (86%), Gaps = 20/1136 (1%)
 Frame = +2

Query: 89   NKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSIYLRFKDIRIGE 268
            +KFQLVPEFLKVRGLVKQHLDSFNYFVN+GIKKIVRAN  I S +D  IYLRFK++R+GE
Sbjct: 31   DKFQLVPEFLKVRGLVKQHLDSFNYFVNVGIKKIVRANSLITSSLDPEIYLRFKEVRVGE 90

Query: 269  PSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIMLR 448
            PS++   + E++NPH+CRL+D+TY API V+IEY HGSH +   + K+NV+IGR+PIMLR
Sbjct: 91   PSILNVNMAEEINPHMCRLADMTYAAPIYVNIEYAHGSHGKTQHSAKDNVIIGRMPIMLR 150

Query: 449  SCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRVNA 628
            SC CVL+ KDE  LA+LGECPLDPGGYF+IKGTEKVLLIQEQLSKNRIIID+DKKG +NA
Sbjct: 151  SCRCVLHGKDEEELARLGECPLDPGGYFVIKGTEKVLLIQEQLSKNRIIIDSDKKGNINA 210

Query: 629  SVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRDPR 808
            SV SSTE  KSKT I +EK KIY+ L+ F  K +PI++V+KAMGME+DQE+VQMVGRDPR
Sbjct: 211  SVTSSTEMTKSKTVIQMEKGKIYLFLHQFVKK-IPIIIVLKAMGMESDQEIVQMVGRDPR 269

Query: 809  FSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIGHVV 988
            FS  LLPSIEEC + G++++++AL++L+ K+ K  +YG   EKD R +  LR+VF+ HV 
Sbjct: 270  FSASLLPSIEECVSEGVNTRKQALDYLEAKVKK-TSYGPPPEKDGRALYILRDVFLAHVP 328

Query: 989  VNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFKTMI 1168
            V  NN R KC Y  VM+RRM+EA++NKD MDDKDYVGNKRLELSGQ++SLLFEDLFKTMI
Sbjct: 329  VRDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMI 388

Query: 1169 GEVIKTMDAILAKPSRSSRLDPSQLIA---RNNITAGLERTLSTGQFDIKRFRLHRSGMT 1339
             E +K +D IL KP+R+SR D SQ +     +NI+ GLERTLSTG FDIKRFR+HR GMT
Sbjct: 389  TEAVKKVDGILQKPNRASRFDFSQCLTGEKNHNISFGLERTLSTGNFDIKRFRMHRKGMT 448

Query: 1340 QPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 1519
            Q L RLSFIGSLG +TKI PQFEKSRKVSGPR+LQPSQWGMLCPCDTPEGE+CGLVKNLA
Sbjct: 449  QVLTRLSFIGSLGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLA 508

Query: 1520 LMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFAN 1699
            LMTHVTTDEEEGPLV++CY LGV DLE+LS EELHTP+SFL++FNGLILGKHRRPQ FAN
Sbjct: 509  LMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVIFNGLILGKHRRPQYFAN 568

Query: 1700 ALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDG 1879
            +LR+LRRAGKIGEFVSV++NEKQ CVY+ASDGGRVCRPLVIADKG+SR+K+HHM+EL DG
Sbjct: 569  SLRRLRRAGKIGEFVSVFINEKQHCVYVASDGGRVCRPLVIADKGVSRVKQHHMKELQDG 628

Query: 1880 VRTFDDFLREGLIEYLDVNEENNALIALYEGEATRD-------------TTHIEIEPLTI 2020
            VRTFDDF+R+GLIEYLDVNEENNALIALYE +AT +             TTHIEIEP TI
Sbjct: 629  VRTFDDFIRDGLIEYLDVNEENNALIALYESDATSEMAETAEAAKIREGTTHIEIEPFTI 688

Query: 2021 LGVIAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRT 2200
            LGV+AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD+LLYLLVYPQRPLLTTRT
Sbjct: 689  LGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRT 748

Query: 2201 IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYEN 2380
            IELVGYDKLGAGQNATVAVMS +GYDIEDAIV NKA LDRGFGRCIVMKK+    +KY N
Sbjct: 749  IELVGYDKLGAGQNATVAVMSNTGYDIEDAIVMNKASLDRGFGRCIVMKKIVATCQKYGN 808

Query: 2381 NTSDRILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRGV-EC 2548
            +  DRILRPQR   D +KMQILDDDGIAAPGEIIR ND+Y+NKQ PV+TRD +   + + 
Sbjct: 809  DAVDRILRPQRTGPDAEKMQILDDDGIAAPGEIIRPNDVYINKQIPVDTRDNITSPLSDS 868

Query: 2549 QYKSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVC 2728
            QY+   + FKGPEGET VVDRVALCSD+N NLCI ++IRHTRRPE+GDKFSSRHGQKGVC
Sbjct: 869  QYRPAREYFKGPEGETQVVDRVALCSDKNGNLCIKYIIRHTRRPELGDKFSSRHGQKGVC 928

Query: 2729 GTIIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEP 2908
            GTI+QQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLG KAGV +GRFHYGSAFGE 
Sbjct: 929  GTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVCSGRFHYGSAFGER 988

Query: 2909 SGHADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQA 3088
            SGHADKVE IS +LV HGFSYSGKD +YSG++G PLQTY+FMGPIYYQKLKHMVLDKM A
Sbjct: 989  SGHADKVETISATLVKHGFSYSGKDLLYSGLSGEPLQTYVFMGPIYYQKLKHMVLDKMHA 1048

Query: 3089 RGNGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRK 3268
            RG+GP V+MTRQPT G++K GG+RVGEMERDCLIAYGASMLI+ERLM+SSDPFEVQVCR 
Sbjct: 1049 RGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRT 1108

Query: 3269 CGLLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVEPF 3436
            CGLLGYYNYKLK   CS+CKNG+N++T+KLPYACKLL QELQSMN+VPRLKLVE +
Sbjct: 1109 CGLLGYYNYKLKKAFCSTCKNGDNIATMKLPYACKLLFQELQSMNVVPRLKLVEAY 1164


>ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
            lyrata] gi|297309357|gb|EFH39781.1| hypothetical protein
            ARALYDRAFT_917015 [Arabidopsis lyrata subsp. lyrata]
          Length = 1165

 Score = 1754 bits (4543), Expect = 0.0
 Identities = 865/1136 (76%), Positives = 989/1136 (87%), Gaps = 22/1136 (1%)
 Frame = +2

Query: 89   NKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSIYLRFKDIRIGE 268
            +KFQLVPEFLKVRGLVKQHLDSFNYF+N+GIKKIV AN RI S  D SIYLRFK++R+GE
Sbjct: 31   DKFQLVPEFLKVRGLVKQHLDSFNYFINVGIKKIVHANCRIASVTDPSIYLRFKNVRVGE 90

Query: 269  PSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIMLR 448
            PS++   + E++NPH+CRL+D+TY API V+IEY+HGSH +K T+ KN+ +IGR+PIMLR
Sbjct: 91   PSIMNINISEEINPHMCRLADMTYAAPIYVNIEYVHGSHGKKATSVKNDFIIGRMPIMLR 150

Query: 449  SCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRVNA 628
            SC CVL+ KDE  LA+LGECPLDPGGYF+IKGTEKVLLIQEQLSKNRIIID+DKKG +NA
Sbjct: 151  SCRCVLHGKDEEELARLGECPLDPGGYFVIKGTEKVLLIQEQLSKNRIIIDSDKKGNINA 210

Query: 629  SVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRDPR 808
            SV SSTE  KSKT I +EKEKIY+ L+ F  K +PI++V+KAMGME+DQE+VQMVGRDPR
Sbjct: 211  SVTSSTEMTKSKTVIQMEKEKIYLFLHQFVKK-IPIVIVLKAMGMESDQEIVQMVGRDPR 269

Query: 809  FSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIGHVV 988
            FS  LLPSIEEC + G+++Q++AL++L+ K+ K  +YG   EKD R +  LR++F+ HV 
Sbjct: 270  FSASLLPSIEECVSEGVNTQKQALDYLEAKVKK-TSYGPPPEKDGRALYILRDLFLAHVP 328

Query: 989  VNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFKTMI 1168
            V  NN R KC Y  VM+RRM+EA++NKD+MDDKDYVGNKRLELSGQ++SLLFEDLFKTM+
Sbjct: 329  VRDNNFRQKCFYVGVMLRRMIEAMLNKDSMDDKDYVGNKRLELSGQLMSLLFEDLFKTML 388

Query: 1169 GEVIKTMDAILAKPSRSSRLDPSQLI----ARNNITAGLERTLSTGQFDIKRFRLHRSGM 1336
             E IK +DAIL+KPSR+SR D SQ +    ++N I+ GLERTLSTG FDIKRFR+HR GM
Sbjct: 389  SEAIKKVDAILSKPSRASRFDFSQYLTTGDSQNTISVGLERTLSTGNFDIKRFRMHRKGM 448

Query: 1337 TQPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNL 1516
            TQ L RLSFIGSLG +TKI PQFEKSRKVSGPR+LQPSQWGMLCPCDTPEGE+CGLVKNL
Sbjct: 449  TQVLTRLSFIGSLGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNL 508

Query: 1517 ALMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFA 1696
            ALMTHVTTDEEEGPLV++CY LGV DLE+LS EELHTP+SFL++ NGLILGKHRRPQ FA
Sbjct: 509  ALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILGKHRRPQYFA 568

Query: 1697 NALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLD 1876
            N+LR+LRRAGKIGEFVSV+ NEKQ CVY+ASDGGRVCRPLVIADKGISR+K+HHM+EL D
Sbjct: 569  NSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDGGRVCRPLVIADKGISRVKQHHMKELQD 628

Query: 1877 GVRTFDDFLREGLIEYLDVNEENNALIALYEGEATR-------------DTTHIEIEPLT 2017
            GVRTFDDF+R+GLIEYLDVNEENNALIALYE EAT              DTTHIEIEP T
Sbjct: 629  GVRTFDDFIRDGLIEYLDVNEENNALIALYESEATTELDEGAEAAKIKADTTHIEIEPFT 688

Query: 2018 ILGVIAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTR 2197
            ILGV+AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD+LLYLLVYPQRPLLTTR
Sbjct: 689  ILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTR 748

Query: 2198 TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYE 2377
            TIELVGYDKLGAGQNATVAVMS SGYDIEDAIV NK+ LDRGFGRCIVMKK+    +KYE
Sbjct: 749  TIELVGYDKLGAGQNATVAVMSNSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVATCQKYE 808

Query: 2378 NNTSDRILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPV-NTRDTVVRGV- 2542
            N T DRIL PQR   D +KMQILDDDGIA+PGEIIR ND+Y+ KQ PV  TRD +   + 
Sbjct: 809  NGTVDRILMPQRTGPDAEKMQILDDDGIASPGEIIRPNDVYIYKQIPVCTTRDKITSPLS 868

Query: 2543 ECQYKSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKG 2722
            + QY+   + FKGPEGET VVDRVALCSD++ +LCI ++IRHTRRPE+GDKFSSRHGQKG
Sbjct: 869  DSQYRPAREFFKGPEGETQVVDRVALCSDKSGSLCIKYIIRHTRRPELGDKFSSRHGQKG 928

Query: 2723 VCGTIIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFG 2902
            VCGTIIQQEDFPFSE GICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFG
Sbjct: 929  VCGTIIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 988

Query: 2903 EPSGHADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKM 3082
            E SGHADKVE ISK+LVD GFSYSGKD +YSG++G PL+ YIFMGPIYYQKLKHMVLDKM
Sbjct: 989  ERSGHADKVETISKTLVDKGFSYSGKDLLYSGLSGEPLEAYIFMGPIYYQKLKHMVLDKM 1048

Query: 3083 QARGNGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVC 3262
             ARG+GP V+MTRQPT G++K GG+RVGEMERDCLIAYGASMLI+ERLM+SSDPFEVQVC
Sbjct: 1049 HARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVC 1108

Query: 3263 RKCGLLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 3430
            R CGLLGYYNYKLK  +CS+CKNG+N++T+KLPYACKLL QELQSMN+VPRLKLVE
Sbjct: 1109 RACGLLGYYNYKLKKAVCSTCKNGDNIATMKLPYACKLLFQELQSMNVVPRLKLVE 1164


>ref|XP_006494574.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X3 [Citrus sinensis]
          Length = 1058

 Score = 1748 bits (4528), Expect = 0.0
 Identities = 851/1058 (80%), Positives = 953/1058 (90%), Gaps = 6/1058 (0%)
 Frame = +2

Query: 275  VVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIMLRSC 454
            +  DGV EKLNPH+CRLSD+TY APILV+IEY+ GSH +KTT  KN+VVIGR+PIMLRSC
Sbjct: 1    MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSC 60

Query: 455  FCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRVNASV 634
             CVLY KDEA LA+LGECPLDPGGYFIIKGTEKVLLIQEQLSKNR+IIDTDKKG +NASV
Sbjct: 61   RCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASV 120

Query: 635  MSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRDPRFS 814
             SSTETVKSKT I +EK K+Y+ LN F  K +PIMVVMKAMG+E+DQEVVQMVGRDPR+S
Sbjct: 121  TSSTETVKSKTVIQMEKGKMYLLLNQFVKK-IPIMVVMKAMGIESDQEVVQMVGRDPRYS 179

Query: 815  KLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIGHVVVN 994
             LLLPSIEEC    I +Q+KALE+L+ K+ +       ++++ R    LR+VF+ +V V+
Sbjct: 180  ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVH 239

Query: 995  QNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFKTMIGE 1174
             NN RPKC Y AVM+RRM+EA++NKD MDDKDYVGNKRLELSGQ+VSLLFEDLFKTMI E
Sbjct: 240  NNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISE 299

Query: 1175 VIKTMDAILAKPSRSSRLDPSQLIARNNITAGLERTLSTGQFDIKRFRLHRSGMTQPLVR 1354
            V KT+D IL+KPSRSSR D SQ I R++IT GLERTLSTG FD+KRF++HR GMTQ L R
Sbjct: 300  VQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLAR 359

Query: 1355 LSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 1534
            LSFIG+LGHMT++ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV
Sbjct: 360  LSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 419

Query: 1535 TTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFANALRKL 1714
            TTDEEEGPL+S+CYCLGVEDLELLSGEELH PNSFL++FNGLILGKHRRP+ FA+ +RKL
Sbjct: 420  TTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKL 479

Query: 1715 RRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDGVRTFD 1894
            RRAGKIGEFVSV+VNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHM+ELLDGVR+FD
Sbjct: 480  RRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFD 539

Query: 1895 DFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGVIAGLIPFPHHNQSPR 2074
            DFLREGLIEYLDVNEENNALIALYEG+AT DTTHIEIEP TILGVIAGLIP+PHHNQSPR
Sbjct: 540  DFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPR 599

Query: 2075 NTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVA 2254
            NTYQCAMGKQAMGNIA+NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVA
Sbjct: 600  NTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVA 659

Query: 2255 VMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTSDRILRPQRDN---DK 2425
            VMSYSGYDIEDAIV NK+ LDRGFGRCIV+KK   +N+KY N+TSDRILRP R     ++
Sbjct: 660  VMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER 719

Query: 2426 MQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVR---GVECQYKSTFQKFKGPEGET 2596
            MQILDDDG+AAPGEII+ ND+Y+NK+SP+ TR +++      + +Y+S  Q +KGP+GET
Sbjct: 720  MQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGET 779

Query: 2597 CVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSEKGI 2776
            CVVDRVALCSD+N +LCI F+IRHTRRPE+GDKFSSRHGQKGVCGTI+QQEDFPFSE+GI
Sbjct: 780  CVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGI 839

Query: 2777 CPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSGHADKVEVISKSLVD 2956
            CPDLIMNPHGFPSRMTVGKMIELLGGKAGVS GRFHYGSAFGEPSGHAD VE IS++LV 
Sbjct: 840  CPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVK 899

Query: 2957 HGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARGNGPHVLMTRQPTSG 3136
            HGFSY+GKD IYSGITGCPLQ YIFMGPIYYQKLKHMVLDKM ARG+GP V++TRQPT G
Sbjct: 900  HGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEG 959

Query: 3137 RAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCGLLGYYNYKLKAGIC 3316
            RA+ GG+RVGEMERDCLIAYGASMLIFERLM+SSDPFEVQVCR CGLLGYYN+KLKAGIC
Sbjct: 960  RARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGIC 1019

Query: 3317 SSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 3430
            S+CKNG+N+S++KLPYACKLLIQELQSMNIVPRLKL E
Sbjct: 1020 STCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1057


>ref|XP_006279912.1| hypothetical protein CARUB_v10025768mg [Capsella rubella]
            gi|482548616|gb|EOA12810.1| hypothetical protein
            CARUB_v10025768mg [Capsella rubella]
          Length = 1160

 Score = 1746 bits (4521), Expect = 0.0
 Identities = 856/1131 (75%), Positives = 987/1131 (87%), Gaps = 17/1131 (1%)
 Frame = +2

Query: 89   NKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSIYLRFKDIRIGE 268
            +KFQLVPEFLKVRGLVKQHLDSFNY +N+GIKKIV+AN  I S  D SIYLRFK +R+GE
Sbjct: 31   DKFQLVPEFLKVRGLVKQHLDSFNYLINVGIKKIVKANCLITSTADPSIYLRFKAVRVGE 90

Query: 269  PSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIMLR 448
            PS++   + E++NPH+CRL+D+TY API V+IEY+HGSH +K T+ KNNV+IGR+PIMLR
Sbjct: 91   PSILNINMAEQINPHMCRLADMTYAAPIHVNIEYVHGSHGEKQTSAKNNVLIGRMPIMLR 150

Query: 449  SCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRVNA 628
            SC CVL  KDE  LA+LGECPLDPGGYF+IKGTEKVLLIQEQLSKNRIIID+DKKG +NA
Sbjct: 151  SCRCVLNGKDEDELARLGECPLDPGGYFVIKGTEKVLLIQEQLSKNRIIIDSDKKGNINA 210

Query: 629  SVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRDPR 808
            SV SSTE  KSKT I +EKE+IY+ L+ F  K +PI++V+KAMGME+DQE+VQMVGRDPR
Sbjct: 211  SVTSSTEMTKSKTVIQMEKERIYLFLHQFVKK-IPIIIVLKAMGMESDQEIVQMVGRDPR 269

Query: 809  FSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIGHVV 988
            FS  LLPSIEEC + G+++Q++AL++L+ K+ K  +YG   +KD R +  LR++F+ HV 
Sbjct: 270  FSASLLPSIEECVSEGVNTQKQALDYLEAKVKK-TSYGPPLQKDGRALYILRDLFLAHVP 328

Query: 989  VNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFKTMI 1168
            V  NN R KC Y  VM+RRM+EA++NKD MDDKDYVGNKRLELSGQ++SLLFEDLFKTMI
Sbjct: 329  VRDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMI 388

Query: 1169 GEVIKTMDAILAKPSRSSRLDPSQLIARNNITAGLERTLSTGQFDIKRFRLHRSGMTQPL 1348
             E IK +D IL K +R+SR D SQ ++ + I+ GLERTLSTG FDIKRFR+HR GMTQ L
Sbjct: 389  TEAIKKVDVILTKQNRASRFDFSQCLSGDIISLGLERTLSTGNFDIKRFRMHRKGMTQVL 448

Query: 1349 VRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMT 1528
             RLSFIGSLG +TKI PQFEKSRKVSGPR+LQPSQWGMLCPCDTPEGE+CGLVKNLALMT
Sbjct: 449  TRLSFIGSLGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMT 508

Query: 1529 HVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFANALR 1708
            HVTTDEEEGPLV++CY LGV DLE+LS EELHTP+SFL++ NGLILGKHRRPQ FAN+LR
Sbjct: 509  HVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILGKHRRPQYFANSLR 568

Query: 1709 KLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDGVRT 1888
            +LRRAGKIGEFVSV+ NEKQ CVY+ASDGGRVCRPLVIADKGISR+K+HHM+EL DGVRT
Sbjct: 569  RLRRAGKIGEFVSVFTNEKQHCVYVASDGGRVCRPLVIADKGISRVKQHHMKELQDGVRT 628

Query: 1889 FDDFLREGLIEYLDVNEENNALIALYEGEAT-------------RDTTHIEIEPLTILGV 2029
            FDDF+R+GLIEYLDVNEENNALIALYE +AT              DTTHIEIEP TILGV
Sbjct: 629  FDDFIRDGLIEYLDVNEENNALIALYESDATTELDEGGEAAKIRADTTHIEIEPFTILGV 688

Query: 2030 IAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIEL 2209
            +AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD+LLYLLVYPQRPLLTTRTIEL
Sbjct: 689  VAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIEL 748

Query: 2210 VGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTS 2389
            VGYDKLGAGQNATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIVMKK+   ++KY+NNT 
Sbjct: 749  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVATSQKYDNNTQ 808

Query: 2390 DRILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRGV-ECQYK 2557
            DRILRPQR   D +KMQILD+DGIA+PGEIIR ND+Y+NKQSPV+T++ +   + + QY+
Sbjct: 809  DRILRPQRTGPDAEKMQILDNDGIASPGEIIRPNDVYINKQSPVDTKNKMTTQLSDSQYR 868

Query: 2558 STFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGTI 2737
               + FKGPEGET VVDRVALCS+++++LCI ++IRHTRRPE+GDKFSSRHGQKGVCGTI
Sbjct: 869  PAREYFKGPEGETQVVDRVALCSNKHDHLCIKYIIRHTRRPELGDKFSSRHGQKGVCGTI 928

Query: 2738 IQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSGH 2917
            IQQEDFPFSE GICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFGE  GH
Sbjct: 929  IQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGERGGH 988

Query: 2918 ADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARGN 3097
            ADKVE IS +LV+ GFSYSGKD +YSGI+G PLQ YIFMGPIYYQKLKHMVLDKM ARG+
Sbjct: 989  ADKVETISATLVNKGFSYSGKDLLYSGISGEPLQAYIFMGPIYYQKLKHMVLDKMHARGS 1048

Query: 3098 GPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCGL 3277
            GP V+MTRQPT G++K GG+RVGEMERDCLIAYGASMLI+ERLM+SSDPFEVQVCR CGL
Sbjct: 1049 GPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMVSSDPFEVQVCRACGL 1108

Query: 3278 LGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 3430
            LGYY+YKLK   CS+CKNG+N++T+KLPYACKLL QELQSMN+VPRLKL+E
Sbjct: 1109 LGYYSYKLKKAFCSTCKNGDNIATMKLPYACKLLFQELQSMNVVPRLKLIE 1159


>ref|NP_199327.4| DNA-directed RNA polymerase RPC2 [Arabidopsis thaliana]
            gi|332007826|gb|AED95209.1| DNA-directed RNA polymerase
            RPC2 [Arabidopsis thaliana]
          Length = 1161

 Score = 1732 bits (4485), Expect = 0.0
 Identities = 852/1132 (75%), Positives = 976/1132 (86%), Gaps = 18/1132 (1%)
 Frame = +2

Query: 89   NKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSIYLRFKDIRIGE 268
            +KFQLVPEFLKVRGLVKQHLDSFNYF+N+GI KIV+AN RI S VD SIYLRFK +R+GE
Sbjct: 31   DKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRITSTVDPSIYLRFKKVRVGE 90

Query: 269  PSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIMLR 448
            PS++     E +NPH+CRL+D+TY API V+IEY+HGSH  K  + K+NV+IGR+PIMLR
Sbjct: 91   PSIINVNTVENINPHMCRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIMLR 150

Query: 449  SCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRVNA 628
            SC CVL+ KDE  LA+LGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIID+DKKG +NA
Sbjct: 151  SCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDSDKKGNINA 210

Query: 629  SVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRDPR 808
            SV SSTE  KSKT I +EKEKIY+ L+ F  K +PI++V+KAMGME+DQE+VQMVGRDPR
Sbjct: 211  SVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKK-IPIIIVLKAMGMESDQEIVQMVGRDPR 269

Query: 809  FSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIGHVV 988
            FS  LLPSIEEC + G+++Q++AL++L+ K+ K  +YG   EKD R +  LR++F+ HV 
Sbjct: 270  FSASLLPSIEECVSEGVNTQKQALDYLEAKVKK-ISYGTPPEKDGRALSILRDLFLAHVP 328

Query: 989  VNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFKTMI 1168
            V  NN R KC Y  VM+RRM+EA++NKD MDDKDYVGNKRLELSGQ++SLLFEDLFKTM+
Sbjct: 329  VPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTML 388

Query: 1169 GEVIKTMDAILAKPSRSSRLDPSQLI---ARNNITAGLERTLSTGQFDIKRFRLHRSGMT 1339
             E IK +D IL KP R+SR D SQ +   +R +I+ GLERTLSTG FDIKRFR+HR GMT
Sbjct: 389  SEAIKNVDHILNKPIRASRFDFSQCLNKDSRYSISLGLERTLSTGNFDIKRFRMHRKGMT 448

Query: 1340 QPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 1519
            Q L RLSFIGS+G +TKI PQFEKSRKVSGPR+LQPSQWGMLCPCDTPEGE+CGLVKNLA
Sbjct: 449  QVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLA 508

Query: 1520 LMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFAN 1699
            LMTHVTTDEEEGPLV++CY LGV DLE+LS EELHTP+SFL++ NGLILGKH RPQ FAN
Sbjct: 509  LMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILGKHSRPQYFAN 568

Query: 1700 ALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDG 1879
            +LR+LRRAGKIGEFVSV+ NEKQ CVY+ASD GRVCRPLVIADKGISR+K+HHM+EL DG
Sbjct: 569  SLRRLRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDG 628

Query: 1880 VRTFDDFLREGLIEYLDVNEENNALIALYEGEATR-----------DTTHIEIEPLTILG 2026
            VRTFDDF+R+GLIEYLDVNEENNALIALYE + T            DTTHIEIEP TILG
Sbjct: 629  VRTFDDFIRDGLIEYLDVNEENNALIALYESDGTTELDEGAEAAKADTTHIEIEPFTILG 688

Query: 2027 VIAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIE 2206
            V+AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD+LLYLLVYPQRPLLTTRTIE
Sbjct: 689  VVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIE 748

Query: 2207 LVGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNT 2386
            LVGYDKLGAGQNATVAVMS+SGYDIEDAIV NK+ LDRGFGRCIVMKK+  +++KY+N T
Sbjct: 749  LVGYDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCT 808

Query: 2387 SDRILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRGV-ECQY 2554
            +DRIL PQR   D +KMQILDDDG+A PGEIIR NDIY+NKQ PV+T       + + QY
Sbjct: 809  ADRILIPQRTGPDAEKMQILDDDGLATPGEIIRPNDIYINKQVPVDTVTKFTSALSDSQY 868

Query: 2555 KSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGT 2734
            +   + FKGPEGET VVDRVALCSD+   LCI ++IRHTRRPE+GDKFSSRHGQKGVCG 
Sbjct: 869  RPAREYFKGPEGETQVVDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGI 928

Query: 2735 IIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSG 2914
            IIQQEDFPFSE GICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFGE SG
Sbjct: 929  IIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGERSG 988

Query: 2915 HADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARG 3094
            HADKVE IS +LV+ GFSYSGKD +YSGI+G P++ YIFMGPIYYQKLKHMVLDKM ARG
Sbjct: 989  HADKVETISATLVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARG 1048

Query: 3095 NGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCG 3274
            +GP V+MTRQPT G++K GG+RVGEMERDCLIAYGASMLI+ERLM+SSDPFEVQVCR CG
Sbjct: 1049 SGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRACG 1108

Query: 3275 LLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 3430
            LLGYYNYKLK  +C++CKNG+N++T+KLPYACKLL QELQSMN+VPRLKL E
Sbjct: 1109 LLGYYNYKLKKAVCTTCKNGDNIATMKLPYACKLLFQELQSMNVVPRLKLTE 1160


>ref|XP_007010805.1| DNA-directed RNA polymerase isoform 7 [Theobroma cacao]
            gi|508727718|gb|EOY19615.1| DNA-directed RNA polymerase
            isoform 7 [Theobroma cacao]
          Length = 1082

 Score = 1719 bits (4453), Expect = 0.0
 Identities = 849/1079 (78%), Positives = 943/1079 (87%), Gaps = 30/1079 (2%)
 Frame = +2

Query: 284  DGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIMLRSCFCV 463
            + V EK+NPH CRLSD+TY API V+IEYI GSH QKT   KN++VIGR+PIMLRSC CV
Sbjct: 4    NAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCV 63

Query: 464  LYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRVNASVMSS 643
            LY KDEA LA+LGECPLDPGGYF+IKG EKV+LIQEQLSKNRIIID DKKG +NASV SS
Sbjct: 64   LYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSS 123

Query: 644  TETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRDPRFSKLL 823
            +E  KSKT I +EKEKIY+ LN F  K +PIMVVMKAMGME+DQEVVQMVGRDP ++ +L
Sbjct: 124  SEATKSKTVIQMEKEKIYLLLNQFVKK-IPIMVVMKAMGMESDQEVVQMVGRDPHYNAVL 182

Query: 824  LPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIGHVVVNQNN 1003
            LPSIEEC   GI +Q++ALE+L+ K+ +    G +SEK+ R +  LR+VF+ +V V  NN
Sbjct: 183  LPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNN 242

Query: 1004 LRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFKTMIGEVIK 1183
             RPKCLY AVM+RRM+EAI+NKD MDDKDYVGNKRLELSGQ++SLLFEDLFKT I EV K
Sbjct: 243  FRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQK 302

Query: 1184 TMDAILAKPSRSSRLDPSQLI-ARNNITAGLERTLSTGQFDIKRFRLHRSGMTQPLVRLS 1360
             +D +L+KPSRSS LDPSQ + +R  IT GLERTLSTG FDIKRF++HR GMTQ L RLS
Sbjct: 303  MIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKRFKMHRKGMTQVLARLS 362

Query: 1361 FIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT 1540
            FIG+LG+MTK+ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT
Sbjct: 363  FIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT 422

Query: 1541 DEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFANALRKLRR 1720
            DE+EGPL+S+CYCLGVEDLELLSGEELHTPNSFL++ NGLILGKHRRPQ FA A+RKLRR
Sbjct: 423  DEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGKHRRPQHFAVAMRKLRR 482

Query: 1721 AGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDGVRTFDDF 1900
            AGK+GEFVSV+VNEKQRCVYIASDGGRVCRPLVIADKG+SRIKEHHM+ELLDGVRTFDDF
Sbjct: 483  AGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELLDGVRTFDDF 542

Query: 1901 LREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGVIAGLIPFPHHNQSPRNT 2080
            LR+GLIEYLDVNEENNALIALYEGEAT +TTHIEIEP TILGV AGLIP+PHHNQSPRNT
Sbjct: 543  LRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVCAGLIPYPHHNQSPRNT 602

Query: 2081 YQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIEL----------------- 2209
            YQCAMGKQAMGNIAYNQLCRMD+LLYLLVYPQRPLLTTRTIEL                 
Sbjct: 603  YQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELVSGLYVVDYSTPFCPVN 662

Query: 2210 ------VGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEK 2371
                  VGYDKLGAGQNATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIVMK+   VN+K
Sbjct: 663  CLLCFQVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQK 722

Query: 2372 YENNTSDRILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRG- 2539
            YE   SDRILRPQR    +++MQILDDDGIA PGEIIR NDIY+NK+S ++TR + V   
Sbjct: 723  YETGASDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSE 782

Query: 2540 --VECQYKSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHG 2713
               +  Y+   Q +KGPEGE+CVVDRVALC+DRN+NL I F+IRHTRRPEVGDKFSSRHG
Sbjct: 783  SLPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHG 842

Query: 2714 QKGVCGTIIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGS 2893
            QKGVCGTIIQQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS GRFHYGS
Sbjct: 843  QKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 902

Query: 2894 AFGEPSGHADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVL 3073
            AFGEPSGHAD+VE IS++L+ HGFSY+GKDFIYSGITGCPLQ YIFMGPIYYQKLKHMVL
Sbjct: 903  AFGEPSGHADRVEAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVL 962

Query: 3074 DKMQARGNGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEV 3253
            DKM ARGNGP V++TRQPT GRA+ GG+RVGEMERDCLIAYGASMLIFERLM+SSDPFEV
Sbjct: 963  DKMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEV 1022

Query: 3254 QVCRKCGLLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 3430
            QVCRKCGLLGYY++KLK GICSSCKNG+NVST+KLPYACKLLIQELQSMNIVPRLKL E
Sbjct: 1023 QVCRKCGLLGYYSHKLKTGICSSCKNGDNVSTMKLPYACKLLIQELQSMNIVPRLKLSE 1081


>ref|XP_006583557.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like isoform
            X1 [Glycine max]
          Length = 1165

 Score = 1716 bits (4444), Expect = 0.0
 Identities = 856/1151 (74%), Positives = 970/1151 (84%), Gaps = 12/1151 (1%)
 Frame = +2

Query: 14   GKNKFPPSSLKHSDIAQPFKPPP---AVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIK 184
            G NK P      S   Q     P   AV+KFQL+PEFLKVRGLVKQHLDSFNYFV   IK
Sbjct: 17   GGNKLPGDHCGDSGFDQRVLTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTDIK 76

Query: 185  KIVRANQRIESRVDKSIYLRFKDIRIGEPSVVADGVEEKLNPHLCRLSDITYGAPILVDI 364
            KIVRAN  I +     IYLRF ++ IG+PS++ D V E L P  CRLSD+TY API  D+
Sbjct: 77   KIVRANDLIVASRYPHIYLRFLNVGIGKPSIMIDEVTEDLTPQTCRLSDLTYAAPICADV 136

Query: 365  EYIHGSHIQKTTAHKNNVVIGRLPIMLRSCFCVLYQKDEAALAKLGECPLDPGGYFIIKG 544
            EY  GSH +     K  V IGR+PIMLRSC CVL+ +DEA LAKLGECPLDPGGYF+IKG
Sbjct: 137  EYTLGSHDKPDIKRKLKVEIGRMPIMLRSCCCVLHGRDEAELAKLGECPLDPGGYFVIKG 196

Query: 545  TEKVLLIQEQLSKNRIIIDTDKKGRVNASVMSSTETVKSKTNIFIEKEKIYVQLNIFGNK 724
            TEKV+LIQEQLSKNRIIIDTDKKG + ASV SSTE +K+KT + +EKEK+++QLN F  K
Sbjct: 197  TEKVILIQEQLSKNRIIIDTDKKGNITASVTSSTEKIKTKTVVVMEKEKLWLQLNKFPKK 256

Query: 725  GVPIMVVMKAMGMENDQEVVQMVGRDPRFSKLLLPSIEECRAHGIDSQQKALEFLDRKIS 904
             VP+MVVMKAMGME+DQEV QMVGRDPR+S LLLPSIEEC    + ++++ALE+LD+ + 
Sbjct: 257  -VPLMVVMKAMGMESDQEVTQMVGRDPRYSFLLLPSIEECTKCKVYTREQALEYLDKLVK 315

Query: 905  KGPAYGGSSEKDNRVMKALREVFIGHVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMDD 1084
            +      ++EK+     ALR+VF+ +V V+Q+N RPKC+Y AVM+RR+M+AI+NKD MDD
Sbjct: 316  RPTYSNNAAEKEGAAFSALRDVFLANVPVDQDNFRPKCIYVAVMMRRIMDAILNKDAMDD 375

Query: 1085 KDYVGNKRLELSGQMVSLLFEDLFKTMIGEVIKTMDAILAKPSRSSRLDPSQLIARNN-- 1258
            KDYVGNKRLELSGQ++SLLFEDLFK+M  EV    D +L KP ++   D   L+ R    
Sbjct: 376  KDYVGNKRLELSGQLISLLFEDLFKSMTTEVKNLTDKMLEKPDKAKNFDICTLLTRTRSI 435

Query: 1259 ITAGLERTLSTGQFDIKRFRLHRSGMTQPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRA 1438
            IT GLERTLSTG F+IKRFR+ R GMTQ L RLSFIG+LGHMT++ PQFEKSRKVSGPRA
Sbjct: 436  ITLGLERTLSTGNFEIKRFRMERKGMTQVLQRLSFIGALGHMTRVSPQFEKSRKVSGPRA 495

Query: 1439 LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEE 1618
            LQPSQWGMLCPCDTPEGE+CGLVKNLALMTHVTTDEEE PL+S+C  LGVED++ LS EE
Sbjct: 496  LQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEKPLISLCESLGVEDMKDLSAEE 555

Query: 1619 LHTPNSFLIVFNGLILGKHRRPQRFANALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGG 1798
            LHTP+SFL++FNGLILGKHRRP  FA A+RKLRRAGKIGEFVSVYVNEKQ CVY+ASDGG
Sbjct: 556  LHTPDSFLVIFNGLILGKHRRPLHFATAIRKLRRAGKIGEFVSVYVNEKQHCVYLASDGG 615

Query: 1799 RVCRPLVIADKGISRIKEHHMRELLDGVRTFDDFLREGLIEYLDVNEENNALIALYEGEA 1978
            RVCRPLVIADKGISRIK+HHM+EL+DGVRTFDDFLR+GL+EYLDVNEENNALIALYEG+A
Sbjct: 616  RVCRPLVIADKGISRIKQHHMKELMDGVRTFDDFLRDGLLEYLDVNEENNALIALYEGDA 675

Query: 1979 TRDTTHIEIEPLTILGVIAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLY 2158
            T +TTHIEIEP TILGVIAGLIP+PHHNQSPRNTYQCAMGKQAMGNIA+NQL RMDSLLY
Sbjct: 676  TSETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRMDSLLY 735

Query: 2159 LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCI 2338
            LLVYPQRPLLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV NKA LDRGFGRCI
Sbjct: 736  LLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCI 795

Query: 2339 VMKKMKVVNEKYENNTSDRILRPQRDND---KMQILDDDGIAAPGEIIRTNDIYLNKQSP 2509
            VMKK   + +K+ N+TSDRILRP R  D   +MQILDDDGIAAPGEI+R  DIY+NKQSP
Sbjct: 796  VMKKYNAIIQKHSNDTSDRILRPNRTADTAGRMQILDDDGIAAPGEILRPYDIYINKQSP 855

Query: 2510 VNTR----DTVVRGVECQYKSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRR 2677
            ++TR     +     +  Y+S  Q FKG  GE  VVDRV LCSD++NN+CI F+IRHTRR
Sbjct: 856  IDTRTPKTGSAANLPDSAYRSNAQSFKGNGGE--VVDRVVLCSDKDNNMCIKFLIRHTRR 913

Query: 2678 PEVGDKFSSRHGQKGVCGTIIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGK 2857
            PE+GDKFSSRHGQKGVCGTI+ QEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGK
Sbjct: 914  PELGDKFSSRHGQKGVCGTIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGK 973

Query: 2858 AGVSNGRFHYGSAFGEPSGHADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMG 3037
            AGVS GRFHYGSAFGE SGHADKVE IS++LV  GF+YSGKDFIYSGITGCPLQ YIFMG
Sbjct: 974  AGVSCGRFHYGSAFGERSGHADKVETISETLVSKGFNYSGKDFIYSGITGCPLQAYIFMG 1033

Query: 3038 PIYYQKLKHMVLDKMQARGNGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIF 3217
            PIYYQKLKHMVLDKM ARG+GP V++TRQPT GRA+ GG+RVGEMERDCLIAYGASMLI+
Sbjct: 1034 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIY 1093

Query: 3218 ERLMLSSDPFEVQVCRKCGLLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQS 3397
            ERLMLSSDPFEVQVC  CGLLGYYN+KLK GICSSCKNG+N+ST+KLPYACKL+IQELQS
Sbjct: 1094 ERLMLSSDPFEVQVCTACGLLGYYNHKLKTGICSSCKNGDNISTMKLPYACKLMIQELQS 1153

Query: 3398 MNIVPRLKLVE 3430
            MNIVPRLKL +
Sbjct: 1154 MNIVPRLKLAD 1164


>dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 1194

 Score = 1706 bits (4418), Expect = 0.0
 Identities = 838/1119 (74%), Positives = 967/1119 (86%), Gaps = 7/1119 (0%)
 Frame = +2

Query: 89   NKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSIYLRFKDIRIGE 268
            +KFQLVPEFLKVRGLVKQHLDSFNYF+N+GI KIV+AN RI S VD SIYLRFK +R+GE
Sbjct: 52   DKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRITSTVDPSIYLRFKKVRVGE 111

Query: 269  PSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIMLR 448
            PS++     E +NPH+CRL+D+TY API V+IEY+HGSH  K  + K+NV+IGR+PIMLR
Sbjct: 112  PSIINVNTVENINPHMCRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIMLR 171

Query: 449  SCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRVNA 628
            SC CVL+ KDE  LA+LGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIID+DKKG +NA
Sbjct: 172  SCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDSDKKGNINA 231

Query: 629  SVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRDPR 808
            SV SSTE  KSKT I +EKEKIY+ L+ F  K +PI++V+KAMGME+DQE+VQMVGRDPR
Sbjct: 232  SVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKK-IPIIIVLKAMGMESDQEIVQMVGRDPR 290

Query: 809  FSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIGHVV 988
            FS  LLPSIEEC + G+++Q++AL++L+ K+ K  +YG   EKD R +  LR++F+ HV 
Sbjct: 291  FSASLLPSIEECVSEGVNTQKQALDYLEAKVKK-ISYGTPPEKDGRALSILRDLFLAHVP 349

Query: 989  VNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFKTMI 1168
            V  NN R KC Y  VM+RRM+EA++NKD MDDKDYVGNKRLELSGQ++SLLFEDLFKTM+
Sbjct: 350  VPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTML 409

Query: 1169 GEVIKTMDAILAKPSRSSRLDPSQLI---ARNNITAGLERTLSTGQFDIKRFRLHRSGMT 1339
             E IK +D IL KP R+SR D SQ +   +R +I+ GLERTLSTG FDIKRFR+HR GMT
Sbjct: 410  SEAIKNVDHILNKPIRASRFDFSQCLNKDSRYSISLGLERTLSTGNFDIKRFRMHRKGMT 469

Query: 1340 QPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 1519
            Q L RLSFIGS+G +TKI PQFEKSRKVSGPR+LQPSQWGMLCPCDTPEGE+CGLVKNLA
Sbjct: 470  QVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLA 529

Query: 1520 LMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFAN 1699
            LMTHVTTDEEEGPLV++CY LGV DLE+LS EELHTP+SFL++ NGLILGKH RPQ FAN
Sbjct: 530  LMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILGKHSRPQYFAN 589

Query: 1700 ALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDG 1879
            +LR+LRRAGKIGEFVSV+ NEKQ CVY+ASD GRVCRPLVIADKGISR+K+HHM+EL DG
Sbjct: 590  SLRRLRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDG 649

Query: 1880 VRTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGVIAGLIPFPHH 2059
            VRTFDDF+R+GLIEYLDVNEENNAL+ L    A  DTTHIEIEP TILGV+AGLIP+PHH
Sbjct: 650  VRTFDDFIRDGLIEYLDVNEENNALVCLRAEAAKADTTHIEIEPFTILGVVAGLIPYPHH 709

Query: 2060 NQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 2239
            NQSPRNTYQCAMGKQAMGNIAYNQL RMD+LLYLLVYPQRPLLTTRTIELVGYDKLGAGQ
Sbjct: 710  NQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 769

Query: 2240 NATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTSDRILRPQR-- 2413
            NATVAVMS+SGYDIEDAIV NK+ LDRGFGRCIVMKK+  +++KY+N T+DRIL PQR  
Sbjct: 770  NATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADRILIPQRTG 829

Query: 2414 -DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRGV-ECQYKSTFQKFKGPE 2587
             D +KMQILDDDG+A PGEIIR NDIY+NKQ PV+T       + + QY+   + FKGPE
Sbjct: 830  PDAEKMQILDDDGLATPGEIIRPNDIYINKQVPVDTVTKFTSALSDSQYRPAREYFKGPE 889

Query: 2588 GETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSE 2767
            GET VVDRVALCSD+   LCI ++IRHTRRPE+GDKFSSRHGQKGVCG IIQQEDFPFSE
Sbjct: 890  GETQVVDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSE 949

Query: 2768 KGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSGHADKVEVISKS 2947
             GICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFGE SGHADKVE IS +
Sbjct: 950  LGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGERSGHADKVETISAT 1009

Query: 2948 LVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARGNGPHVLMTRQP 3127
            LV+ GFSYSGKD +YSGI+G P++ YIFMGPIYYQKLKHMVLDKM ARG+GP V+MTRQP
Sbjct: 1010 LVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQP 1069

Query: 3128 TSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCGLLGYYNYKLKA 3307
            T G++K GG+RVGEMERDCLIAYGASMLI+ERLM+SSDPFEVQVCR CGLLGYYNYKLK 
Sbjct: 1070 TEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRACGLLGYYNYKLKK 1129

Query: 3308 GICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKL 3424
             +C++CKNG+N++T+KLPYACKLL Q ++++ +  +LKL
Sbjct: 1130 AVCTTCKNGDNIATMKLPYACKLLFQ-VKTIGLFFKLKL 1167


>ref|XP_007152964.1| hypothetical protein PHAVU_004G175000g [Phaseolus vulgaris]
            gi|561026273|gb|ESW24958.1| hypothetical protein
            PHAVU_004G175000g [Phaseolus vulgaris]
          Length = 1161

 Score = 1701 bits (4406), Expect = 0.0
 Identities = 849/1152 (73%), Positives = 968/1152 (84%), Gaps = 10/1152 (0%)
 Frame = +2

Query: 5    KEKGKNKFPPSS-LKHSDIAQPFKPPPAVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGI 181
            +  G NK P  S      +  P K   AV+KFQL+PEFLKVRGLVKQHLDSFNYFV   I
Sbjct: 14   ESNGGNKKPDDSGFDQRILTAPIKS--AVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTEI 71

Query: 182  KKIVRANQRIESRVDKSIYLRFKDIRIGEPSVVADGVEEKLNPHLCRLSDITYGAPILVD 361
            KKIVRAN  I +     IYLRF +++I +P ++ + V + + P  CRLSD TY API VD
Sbjct: 72   KKIVRANNLISATRHPHIYLRFLNVKIRKPCIMDESVTDDVTPQTCRLSDQTYAAPICVD 131

Query: 362  IEYIHGSHIQKTTAHKNNVVIGRLPIMLRSCFCVLYQKDEAALAKLGECPLDPGGYFIIK 541
            +EY HGS        + NV IGR+PIMLRSC CVLY +D+A LAKLGECPLDPGGYF++K
Sbjct: 132  VEYTHGSRDDPRLHKRLNVEIGRMPIMLRSCCCVLYGRDQAELAKLGECPLDPGGYFVVK 191

Query: 542  GTEKVLLIQEQLSKNRIIIDTDKKGRVNASVMSSTETVKSKTNIFIEKEKIYVQLNIFGN 721
            GTEKV+LIQEQLSKNRIIIDTDKKG + ASV SSTE +K+KT I +E EK+++ LN F  
Sbjct: 192  GTEKVILIQEQLSKNRIIIDTDKKGNIAASVTSSTEKIKTKTIIVMENEKLWLHLNQFPK 251

Query: 722  KGVPIMVVMKAMGMENDQEVVQMVGRDPRFSKLLLPSIEECRAHGIDSQQKALEFLDRKI 901
            K VP+M VMKAMG+E+DQEV QMVGRDPR+S LLLPS EECR   + +Q++ALE+LD+ +
Sbjct: 252  K-VPLMAVMKAMGIESDQEVTQMVGRDPRYSFLLLPSFEECRKCNVYTQEQALEYLDKMV 310

Query: 902  SKGPAYGGSSEKDNRVMKALREVFIGHVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMD 1081
             +      S+EK+ R    LR+VF+ +V V+ +N RPKC+Y AVM+RR+M+AI+NKD MD
Sbjct: 311  KRSMYSSNSAEKEGRAFSVLRDVFLANVPVDGDNFRPKCIYVAVMMRRIMDAILNKDAMD 370

Query: 1082 DKDYVGNKRLELSGQMVSLLFEDLFKTMIGEVIKTMDAILAKPSRSSRLDPSQLIAR--N 1255
            DKDYVGNKRLELSGQ++SLLFEDLFK+M  EV    D +L KP ++   D S L+ R  N
Sbjct: 371  DKDYVGNKRLELSGQLISLLFEDLFKSMATEVKNLTDKMLDKPDKARNFDISTLLNRTQN 430

Query: 1256 NITAGLERTLSTGQFDIKRFRLHRSGMTQPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPR 1435
             IT GLERTLSTG F+IKRFR+ R GMTQ L RLSFIG++GHMT++ PQFEKSRKVSGPR
Sbjct: 431  IITLGLERTLSTGNFEIKRFRMERKGMTQVLQRLSFIGAMGHMTRVSPQFEKSRKVSGPR 490

Query: 1436 ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLVSVCYCLGVEDLELLSGE 1615
            ALQPSQWGMLCPCDTPEGE+CGLVKNLALMTHVTTDEEE PL+S+CY LGVEDLELLS E
Sbjct: 491  ALQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEESPLISMCYSLGVEDLELLSAE 550

Query: 1616 ELHTPNSFLIVFNGLILGKHRRPQRFANALRKLRRAGKIGEFVSVYVNEKQRCVYIASDG 1795
            ELHTP+SFL++ NGLILGKH+RP RFA A+RKLRR GKIGEFVSV+V+EKQ CVY+ASDG
Sbjct: 551  ELHTPDSFLVILNGLILGKHKRPLRFATAIRKLRRRGKIGEFVSVFVHEKQNCVYLASDG 610

Query: 1796 GRVCRPLVIADKGISRIKEHHMRELLDGVRTFDDFLREGLIEYLDVNEENNALIALYEGE 1975
            GRVCRPLVIADKGISRIK+HHM+EL+DGVRTFDDFLR+GL+EYLDVNEENN LIALYEG+
Sbjct: 611  GRVCRPLVIADKGISRIKQHHMKELMDGVRTFDDFLRDGLLEYLDVNEENNTLIALYEGD 670

Query: 1976 ATRDTTHIEIEPLTILGVIAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLL 2155
            AT +TTHIEIEP TILGVIAGLIP+PHHNQSPRNTYQCAMGKQAMGNIA+NQL RMDSLL
Sbjct: 671  ATSETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRMDSLL 730

Query: 2156 YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRC 2335
            YLLVYPQRPLLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV NKA LDRGFGRC
Sbjct: 731  YLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRC 790

Query: 2336 IVMKKMKVVNEKYENNTSDRILRPQRDND---KMQILDDDGIAAPGEIIRTNDIYLNKQS 2506
            IVMKK   V +K+ N+TSDRILRP R  D   +M+ILDDDGIAAPGEI++  DIY+NKQS
Sbjct: 791  IVMKKYSAVIQKHSNDTSDRILRPNRAADTAGRMRILDDDGIAAPGEILKPFDIYINKQS 850

Query: 2507 PVNTRD--TVVRG--VECQYKSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTR 2674
            P++TR   T   G   +  Y+S  Q FKG  GE  VVDRV LCSD++ N+CI F+IRHTR
Sbjct: 851  PIDTRTPRTGAAGNLPDSAYRSNSQSFKGHGGE--VVDRVVLCSDKDKNMCIKFLIRHTR 908

Query: 2675 RPEVGDKFSSRHGQKGVCGTIIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGG 2854
            RPE+GDKFSSRHGQKGVCGTI+QQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGG
Sbjct: 909  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGG 968

Query: 2855 KAGVSNGRFHYGSAFGEPSGHADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFM 3034
            KAGVS GRFHYGSAFGE SGHADKVE IS++LV  GFSYSGKDFIYSGITGCPLQ YIFM
Sbjct: 969  KAGVSCGRFHYGSAFGERSGHADKVEAISETLVSKGFSYSGKDFIYSGITGCPLQAYIFM 1028

Query: 3035 GPIYYQKLKHMVLDKMQARGNGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLI 3214
            GPIYYQKLKHMVLDKM ARG+GP V++TRQPT GRA+ GG+RVGEMERDCLIAYGASMLI
Sbjct: 1029 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1088

Query: 3215 FERLMLSSDPFEVQVCRKCGLLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQ 3394
            +ERLMLSSDPFEVQVC  CGLLGYYN+KLK GICS CKNG+ +ST+KLPYACKL+IQELQ
Sbjct: 1089 YERLMLSSDPFEVQVCTACGLLGYYNHKLKTGICSYCKNGDKISTMKLPYACKLMIQELQ 1148

Query: 3395 SMNIVPRLKLVE 3430
            SMNIVPRLKL +
Sbjct: 1149 SMNIVPRLKLAD 1160


>ref|XP_004510587.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cicer
            arietinum]
          Length = 1134

 Score = 1699 bits (4400), Expect = 0.0
 Identities = 840/1124 (74%), Positives = 948/1124 (84%), Gaps = 7/1124 (0%)
 Frame = +2

Query: 80   PAVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSIYLRFKDIR 259
            PAV+KFQL+PEFLK RGLVKQHLDSFNYFVN  IKKIVRAN  ++S     IYLRF D+R
Sbjct: 12   PAVDKFQLLPEFLKYRGLVKQHLDSFNYFVNTDIKKIVRANNLVQSSRYPHIYLRFLDVR 71

Query: 260  IGEPSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPI 439
            IG+P  + DG  E ++P  CRLSD TY APILV +EY  GS        KN VVIGR+PI
Sbjct: 72   IGKPERIFDGSSEYVSPQTCRLSDQTYAAPILVSVEYTQGSPDNVIKIPKNKVVIGRMPI 131

Query: 440  MLRSCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGR 619
            MLRSC CVLY +DEA LAKLGECPLDPGGYF+IKGTEKV+LIQEQLSKNRIIIDTDKK  
Sbjct: 132  MLRSCCCVLYNRDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDKKKN 191

Query: 620  VNASVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGR 799
            + ASV SSTE VK+KT I +E+EK++++LN F  K VP+M+VMKAMGME+D EVVQM+GR
Sbjct: 192  ITASVTSSTEKVKTKTTILMEREKMWLELNQFQTK-VPLMIVMKAMGMESDHEVVQMIGR 250

Query: 800  DPRFSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIG 979
            DPR+  LLLPSIEEC   G+ +Q +AL +LD K  +        EK+ R    LR+VF+ 
Sbjct: 251  DPRYGLLLLPSIEECNKSGVSTQAQALAYLDSKAKRSMFSTMQPEKEGRAFSILRDVFLA 310

Query: 980  HVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFK 1159
            +V V+++N RPKC+Y AVM+RR+++AI+NKD MDDKDYVGNKRLELSGQ++SLLFEDLFK
Sbjct: 311  NVPVHEDNFRPKCIYVAVMMRRILDAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFK 370

Query: 1160 TMIGEVIKTMDAILAKPSRSSRLDPSQLIARNNITAGLERTLSTGQFDIKRFRLHRSGMT 1339
            TM  E+    D  L KP R+ + D + L+ R+ I+ GLER LSTG FDIKRF++HRSGMT
Sbjct: 371  TMTTELQTLTDKYLEKPDRAKKFDFTTLLNRDYISPGLERYLSTGNFDIKRFKMHRSGMT 430

Query: 1340 QPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 1519
            Q L RLSFI +LG MT+++PQFEKS+KVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA
Sbjct: 431  QVLQRLSFISALGQMTRVKPQFEKSKKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 490

Query: 1520 LMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFAN 1699
            LMTHVTTD++E PL+S+CY LGVED+E LSGEELHTPNS+L++FNGLILGKHRRPQRFA 
Sbjct: 491  LMTHVTTDDDEAPLISLCYILGVEDIEHLSGEELHTPNSYLVIFNGLILGKHRRPQRFAT 550

Query: 1700 ALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDG 1879
            A+R LRRAG IGEFVSVY+NEKQ CVY+ASDGGRVCRPLVIADKGISR+K HHM+EL DG
Sbjct: 551  AMRNLRRAGVIGEFVSVYLNEKQCCVYLASDGGRVCRPLVIADKGISRVKAHHMKELKDG 610

Query: 1880 VRTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGVIAGLIPFPHH 2059
            V TF+ FLR GLIEYLDVNEENNALIALYEG+AT  TTHIEIEP TILGV AGLIP+PHH
Sbjct: 611  VTTFNHFLRNGLIEYLDVNEENNALIALYEGDATPKTTHIEIEPFTILGVCAGLIPYPHH 670

Query: 2060 NQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 2239
            NQSPRNTYQCAMGKQAMGNIAYNQL RMD+LLYLLVYPQRPLLTT++IELVGYDKLGAGQ
Sbjct: 671  NQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLVYPQRPLLTTKSIELVGYDKLGAGQ 730

Query: 2240 NATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTSDRILRPQRDN 2419
            NATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIVMK+   + +KY N T DRI+RP R  
Sbjct: 731  NATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYVAIRQKYSNGTEDRIIRPNRAA 790

Query: 2420 D---KMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRGV----ECQYKSTFQKFK 2578
            D   +MQILDDDGIAAPGEIIR ND+Y+NKQSP+ TR T         +  Y+ST Q F 
Sbjct: 791  DTTGRMQILDDDGIAAPGEIIRPNDMYINKQSPIETRATTTGSTAKLPDNAYRSTPQTFN 850

Query: 2579 GPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFP 2758
               G   VVDRV LC+D++ NLCI F+ RHTRRPE+GDKFSSRHGQKGVCG    QEDFP
Sbjct: 851  KCHGGE-VVDRVVLCNDKDTNLCIKFLTRHTRRPELGDKFSSRHGQKGVCGXXXXQEDFP 909

Query: 2759 FSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSGHADKVEVI 2938
            FSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS GRFHYGSAFGE SGHADKVE I
Sbjct: 910  FSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGERSGHADKVETI 969

Query: 2939 SKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARGNGPHVLMT 3118
            S++LV HGF+Y+GKDFIYSGITGCPLQ YIFMGPIYYQKLKHMVLDKM ARGNGP  LMT
Sbjct: 970  SETLVKHGFNYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRALMT 1029

Query: 3119 RQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCGLLGYYNYK 3298
            RQPT GRA+ GG+RVGEMERDCLIAYGASMLIFERLM+SSDPFEVQVCRKCGLLGYYN+K
Sbjct: 1030 RQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRKCGLLGYYNHK 1089

Query: 3299 LKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 3430
            LK GICSSCKNGE +ST+KLPYACKLL+QELQSMNIVPRLKL +
Sbjct: 1090 LKTGICSSCKNGEQISTVKLPYACKLLMQELQSMNIVPRLKLAD 1133