BLASTX nr result
ID: Paeonia24_contig00031068
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia24_contig00031068
(389 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004296004.1| PREDICTED: putative ribonuclease H protein A... 70 4e-10
ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein A... 64 3e-08
ref|XP_004295654.1| PREDICTED: uncharacterized protein LOC101314... 62 6e-08
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas... 62 1e-07
gb|AAM09536.1| reverse transcriptase [Medicago sativa] 62 1e-07
gb|ABD32279.2| reverse transcriptase, putative [Medicago truncat... 56 6e-06
gb|AAN04214.1| Putative retroelement [Oryza sativa Japonica Grou... 55 8e-06
>ref|XP_004296004.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 751
Score = 69.7 bits (169), Expect = 4e-10
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 1/126 (0%)
Frame = +3
Query: 15 RKYIVVAWEKVCSSLEGGGLSLMDLGALNKAALLTIVWKALIVEGLLFNFLKRRHKLFVK 194
RK + ++W++VC+ GL L +L AL A L+++ W+ L+ +F RR +F
Sbjct: 279 RKLVTISWQQVCTPRNEAGLDLRNLKALYTAGLISLAWQTLLQSSSWGSFACRRFTIFRH 338
Query: 195 DKASVF-SSIWKGFKVV*REVELHSGWIIGNGVDISLWKDN*LGEPLSTIL*ISEQSLVY 371
K F SS+W G K V + HS WIIG+G I W D L + L + S +
Sbjct: 339 MKFQYFTSSVWHGLKRVLPLLFEHSRWIIGDGNSILFWSDKWLHSSIIQQLNMGSLSHL- 397
Query: 372 LNSSIA 389
LNS +A
Sbjct: 398 LNSRVA 403
>ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 872
Score = 63.5 bits (153), Expect = 3e-08
Identities = 36/108 (33%), Positives = 56/108 (51%)
Frame = +3
Query: 9 NERKYIVVAWEKVCSSLEGGGLSLMDLGALNKAALLTIVWKALIVEGLLFNFLKRRHKLF 188
++R +V+W C+ ++ GGL L L LN + LL W+ F++ R F
Sbjct: 337 DKRGIPLVSWTSCCAPIDEGGLGLKKLDVLNSSLLLKRCWEIFTSSFEGCCFIRNR---F 393
Query: 189 VKDKASVFSSIWKGFKVV*REVELHSGWIIGNGVDISLWKDN*LGEPL 332
K ++ SSIW G + V+ ++ W++G G IS W+DN LG PL
Sbjct: 394 SKRRSYAPSSIWPGVRKFWGLVQNNTRWLVGTGDKISFWRDNFLGRPL 441
>ref|XP_004295654.1| PREDICTED: uncharacterized protein LOC101314263 [Fragaria vesca
subsp. vesca]
Length = 839
Score = 62.4 bits (150), Expect = 6e-08
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Frame = +3
Query: 15 RKYIVVAWEKVCSSLEGGGLSLMDLGALNKAALLTIVWKALIVEGLLFNFLKRRHKLFVK 194
R Y VAW+K C+ L+ GGL + ++ ALN+A LL W L F R
Sbjct: 427 RAYYPVAWKKCCAPLKEGGLGVRNIMALNQAFLLKKFWDFLTKSTTAAAFFSARFLQRSG 486
Query: 195 DKASVF--SSIWKGFKVV*REVELHSGWIIGNGVDISLWKDN 314
S + SSIW G + + ++ +S W++GNG I W N
Sbjct: 487 QPCSYYKRSSIWPGMRPLFTDILYNSKWVVGNGHSIDFWHGN 528
>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
Endonuclease/exonuclease/phosphatase [Medicago
truncatula]
Length = 1246
Score = 61.6 bits (148), Expect = 1e-07
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Frame = +3
Query: 18 KYIVVAWEKVCSSLEGGGLSLMDLGALNKAALLTIVWKALIVEGLLFNFLKRRH------ 179
K V+W+ +C GGL + +N AA+L + W L LKRR
Sbjct: 772 KVCTVSWKILCRPWSEGGLDIKSTRLINNAAMLKLAWNLLSSNSQWAVLLKRRFFSQGQP 831
Query: 180 -KLFVKDKASVFSSIWKGFKVV*REVELHSGWIIGNGVDISLWKDN*LGEPLSTI 341
+ FVK SS+W G K + + WI+G G I+LW +N LGEPL T+
Sbjct: 832 IRYFVK------SSVWHGVKNHMSILRQNKLWIVGTGDRINLWTNNWLGEPLVTL 880
>gb|AAM09536.1| reverse transcriptase [Medicago sativa]
Length = 168
Score = 61.6 bits (148), Expect = 1e-07
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Frame = +3
Query: 30 VAWEKVCSSLEGGGLSLMDLGALNKAALLTIVWKALIVEGLLFNFLKRRHKLFVKDKAS- 206
V+W KVC S + G L++ D +N+A+LL + WK + + + R K+
Sbjct: 3 VSWSKVCQSKDTGVLAVRDPAQVNRASLLLLTWKLITSNEQWAHICRVRFLNNYTPKSHY 62
Query: 207 VFSSIWKGFKVV*REVELHSGWIIGNGVDISLWKDN*LGEPLS 335
+ SS+W G K + + HS W +GNG +I W D L P++
Sbjct: 63 ITSSVWPGLKSNIQYIFYHSIWTVGNGRNIRFWSDKWLDSPIA 105
>gb|ABD32279.2| reverse transcriptase, putative [Medicago truncatula]
Length = 480
Score = 55.8 bits (133), Expect = 6e-06
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Frame = +3
Query: 18 KYIVVAWEKVCSSLEGGGLSLMDLGALNKAALLTIVWKALIVEGLLFNFLKRRHKLFVKD 197
K V+W+ +C GGL + +N++ +L + W+ + + H F+K
Sbjct: 309 KVCTVSWKVMCRPWAAGGLDIKPTCLINESLILLLAWQFSTADS---QWAALMHHRFLKH 365
Query: 198 KASV----FSSIWKGFKVV*REVELHSGWIIGNGVDISLWKDN*LGEPLSTIL*ISEQSL 365
+ SS+W G K + +S WI+G G +I+LW DN LG L L IS
Sbjct: 366 GTPLQHYFLSSMWGGIKEHLSTISSNSIWIVGTGANINLWTDNWLGIRLVDSLNISPTLH 425
Query: 366 VYLNSSIA 389
+S+A
Sbjct: 426 TKFRASVA 433
>gb|AAN04214.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31430304|gb|AAP52238.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 764
Score = 55.5 bits (132), Expect = 8e-06
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Frame = +3
Query: 12 ERKYIVVAWEKVCSSLEGGGLSLMDLGALNKAALLTIVWKALIVEG-------LLFNFLK 170
+RKY ++ WE +C E GGL +D +N A L +++ + G LL N
Sbjct: 370 KRKYHMIKWEALCRPKEFGGLGFIDTRKMNIALLCKWIYR--LESGKEDPCCVLLRNKYM 427
Query: 171 RRHKLFVKDKASVFSSIWKGFKVV*REVELHSGWIIGNGVDISLWKDN*LGE-PLST 338
+ F + KA S WKG V + ++L S + +GNG + W D +GE PL T
Sbjct: 428 KDGGGFFQSKAEESSQFWKGLHEVKKWMDLGSSYKVGNGKATNFWSDVWIGETPLKT 484