BLASTX nr result
ID: Paeonia24_contig00025693
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia24_contig00025693
(682 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI36146.3| unnamed protein product [Vitis vinifera] 225 1e-56
prf||1211235P rpoC-like ORF 236 204 3e-50
pir||A05030 rpoC protein homolog - common tobacco chloroplast 204 3e-50
emb|CAN83637.1| hypothetical protein VITISV_032940 [Vitis vinifera] 200 3e-49
ref|XP_004174090.1| PREDICTED: DNA-directed RNA polymerase subun... 193 5e-47
ref|XP_002519783.1| DNA-directed RNA polymerase beta chain, puta... 180 4e-43
gb|ADD31179.1| RNA polymerase beta' subunit protein [Heuchera sa... 167 2e-39
gb|ADD31163.1| RNA polymerase beta' subunit protein [Dillenia in... 166 6e-39
gb|ADD31178.1| RNA polymerase beta' subunit protein [Gunnera man... 165 1e-38
ref|YP_001671674.1| RNA polymerase beta' subunit [Carica papaya]... 165 1e-38
ref|YP_740556.1| RNA polymerase beta [Platanus occidentalis] gi|... 164 2e-38
ref|YP_009004035.1| RNA polymerase beta [Cucumis hystrix] gi|586... 163 5e-38
gb|AHE41669.1| RNA polymerase beta' subunit (chloroplast) [Paeon... 163 5e-38
gb|AAZ94642.1| RNA polymerase beta I subunit [Cucumis sativus] 163 5e-38
ref|YP_004841774.1| RNA polymerase beta [Cucumis melo subsp. mel... 163 5e-38
ref|YP_247590.2| RNA polymerase beta' subunit [Cucumis sativus] 163 5e-38
sp|Q4VZP2.3|RPOC1_CUCSA RecName: Full=DNA-directed RNA polymeras... 163 5e-38
emb|CAJ00749.1| RNA polymerase beta chain [Cucumis sativus] 163 5e-38
ref|YP_008994386.1| RNA polymerase beta (chloroplast) [Viviania ... 162 9e-38
gb|ADH94334.1| RNA polymerase beta subunit [Syzygium cumini] 162 9e-38
>emb|CBI36146.3| unnamed protein product [Vitis vinifera]
Length = 510
Score = 225 bits (573), Expect = 1e-56
Identities = 127/199 (63%), Positives = 136/199 (68%), Gaps = 2/199 (1%)
Frame = +3
Query: 90 YESLGTY-HEIYGHYL-IVKSVKKEILCIYIRTTIGHISFYREIEEALQGFCRACS*RT* 263
Y+++G Y H+ Y + VKKEI CIYIRTT+GHIS YREIEEA+QGFCRA
Sbjct: 104 YDAIGAYRHKRINLYSPLWLRVKKEIPCIYIRTTVGHISLYREIEEAIQGFCRA------ 157
Query: 264 SYIIWYLNNSMIWYEFEPSRFN*DHIIVPEFLHESRSRKGSFPITDSNPLSNSTQRNMEV 443
RSRKGSF TDSNPLSN TQ+NM V
Sbjct: 158 -----------------------------------RSRKGSFTTTDSNPLSNLTQQNMGV 182
Query: 444 LMAERANLVFHNKVIDRAAMKRLISRLIDHFGMAYTSHILDQVKTLGFHQATATSISLGI 623
LM ER NLVFHNKVID AMKRLISRLIDHFGMAYTSHILDQVKTLGF Q+TATSISLGI
Sbjct: 183 LMTERVNLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQSTATSISLGI 242
Query: 624 DDLLTIPSKGWLVQDAEQQ 680
DDLLTIPSKGWLVQDAEQQ
Sbjct: 243 DDLLTIPSKGWLVQDAEQQ 261
>prf||1211235P rpoC-like ORF 236
Length = 236
Score = 204 bits (518), Expect = 3e-50
Identities = 104/113 (92%), Positives = 106/113 (93%)
Frame = +3
Query: 342 IVPEFLHESRSRKGSFPITDSNPLSNSTQRNMEVLMAERANLVFHNKVIDRAAMKRLISR 521
IVPEF+ ESRS KGSF ITDSNPLSNSTQRNMEVLMAERANLVFHNK I+ AMKRLISR
Sbjct: 17 IVPEFIRESRSIKGSFTITDSNPLSNSTQRNMEVLMAERANLVFHNKAINGTAMKRLISR 76
Query: 522 LIDHFGMAYTSHILDQVKTLGFHQATATSISLGIDDLLTIPSKGWLVQDAEQQ 680
LIDHFGMAYTSHILDQVKTLGF QATATSISLGIDDLLTIPSKGWLVQDAEQQ
Sbjct: 77 LIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQ 129
>pir||A05030 rpoC protein homolog - common tobacco chloroplast
Length = 236
Score = 204 bits (518), Expect = 3e-50
Identities = 104/113 (92%), Positives = 106/113 (93%)
Frame = +3
Query: 342 IVPEFLHESRSRKGSFPITDSNPLSNSTQRNMEVLMAERANLVFHNKVIDRAAMKRLISR 521
IVPEF+ ESRS KGSF ITDSNPLSNSTQRNMEVLMAERANLVFHNK I+ AMKRLISR
Sbjct: 17 IVPEFIRESRSIKGSFTITDSNPLSNSTQRNMEVLMAERANLVFHNKAINGTAMKRLISR 76
Query: 522 LIDHFGMAYTSHILDQVKTLGFHQATATSISLGIDDLLTIPSKGWLVQDAEQQ 680
LIDHFGMAYTSHILDQVKTLGF QATATSISLGIDDLLTIPSKGWLVQDAEQQ
Sbjct: 77 LIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQ 129
>emb|CAN83637.1| hypothetical protein VITISV_032940 [Vitis vinifera]
Length = 203
Score = 200 bits (509), Expect = 3e-49
Identities = 103/116 (88%), Positives = 105/116 (90%)
Frame = +3
Query: 333 DHIIVPEFLHESRSRKGSFPITDSNPLSNSTQRNMEVLMAERANLVFHNKVIDRAAMKRL 512
+ IIV EFL E+RSRKGSF TDSNPLSN TQRNM VLM ERANLVFHNKVID AMKRL
Sbjct: 73 ERIIVLEFLREARSRKGSFTTTDSNPLSNPTQRNMGVLMTERANLVFHNKVIDGTAMKRL 132
Query: 513 ISRLIDHFGMAYTSHILDQVKTLGFHQATATSISLGIDDLLTIPSKGWLVQDAEQQ 680
ISRLIDHFGMAYTSHILDQVKTLGF QATATSISLGIDDLLTIPSKGWLVQDAEQQ
Sbjct: 133 ISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQ 188
>ref|XP_004174090.1| PREDICTED: DNA-directed RNA polymerase subunit beta''-like [Cucumis
sativus]
Length = 326
Score = 193 bits (490), Expect = 5e-47
Identities = 100/113 (88%), Positives = 104/113 (92%)
Frame = +3
Query: 342 IVPEFLHESRSRKGSFPITDSNPLSNSTQRNMEVLMAERANLVFHNKVIDRAAMKRLISR 521
I PEFL ESRSRKGSF I +SN LSN TQRNMEVLMAERA+LVFHNKVID A+KRLISR
Sbjct: 12 IGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISR 71
Query: 522 LIDHFGMAYTSHILDQVKTLGFHQATATSISLGIDDLLTIPSKGWLVQDAEQQ 680
LIDHFGMAYTSHILDQ+KTLGF QATATSISLGIDDLLTIPSKGWLVQDAEQQ
Sbjct: 72 LIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQ 124
>ref|XP_002519783.1| DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
gi|223541022|gb|EEF42579.1| DNA-directed RNA polymerase
beta chain, putative [Ricinus communis]
Length = 349
Score = 180 bits (456), Expect = 4e-43
Identities = 91/101 (90%), Positives = 95/101 (94%)
Frame = +3
Query: 378 KGSFPITDSNPLSNSTQRNMEVLMAERANLVFHNKVIDRAAMKRLISRLIDHFGMAYTSH 557
K FPI DSNPLSNST+RNMEVLMA+RANLVFHNKVIDR A+KRLISRLID+FGMAYTSH
Sbjct: 177 KRKFPIIDSNPLSNSTRRNMEVLMAKRANLVFHNKVIDRTAIKRLISRLIDNFGMAYTSH 236
Query: 558 ILDQVKTLGFHQATATSISLGIDDLLTIPSKGWLVQDAEQQ 680
ILDQVKTLGF QATA SISLGIDDLLTIPSKGWLVQDAEQQ
Sbjct: 237 ILDQVKTLGFQQATAISISLGIDDLLTIPSKGWLVQDAEQQ 277
Score = 91.7 bits (226), Expect = 2e-16
Identities = 41/54 (75%), Positives = 48/54 (88%)
Frame = +3
Query: 3 RIDLNSPLWLRWRLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVKSVKKEIL 164
RI+L+SPLWLRW+LDQR IASREAP+EVHYESLGTYHEIY HYLI++ K I+
Sbjct: 130 RINLDSPLWLRWQLDQRAIASREAPVEVHYESLGTYHEIYEHYLIIEKRKFPII 183
>gb|ADD31179.1| RNA polymerase beta' subunit protein [Heuchera sanguinea]
Length = 689
Score = 167 bits (424), Expect = 2e-39
Identities = 77/86 (89%), Positives = 84/86 (97%)
Frame = +3
Query: 3 RIDLNSPLWLRWRLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVKSVKKEILCIYIRT 182
RI+L+SPLWLRWRLDQRVIASREAP+EVHYESLGTYHEIYGHYLIV+SVKKEI+CIYIRT
Sbjct: 604 RINLDSPLWLRWRLDQRVIASREAPVEVHYESLGTYHEIYGHYLIVRSVKKEIICIYIRT 663
Query: 183 TIGHISFYREIEEALQGFCRACS*RT 260
T+GHIS YREIEEA+QGFCRACS RT
Sbjct: 664 TVGHISLYREIEEAIQGFCRACSYRT 689
>gb|ADD31163.1| RNA polymerase beta' subunit protein [Dillenia indica]
Length = 689
Score = 166 bits (420), Expect = 6e-39
Identities = 76/83 (91%), Positives = 82/83 (98%)
Frame = +3
Query: 3 RIDLNSPLWLRWRLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVKSVKKEILCIYIRT 182
RI+L+SPLWLRWRLDQR+IASREAPIEVHYESLGTYHEIYGHYLIV+SVKKEILCIYIRT
Sbjct: 604 RINLDSPLWLRWRLDQRIIASREAPIEVHYESLGTYHEIYGHYLIVRSVKKEILCIYIRT 663
Query: 183 TIGHISFYREIEEALQGFCRACS 251
T+GHIS YREIEEA+QGFCRACS
Sbjct: 664 TVGHISLYREIEEAIQGFCRACS 686
>gb|ADD31178.1| RNA polymerase beta' subunit protein [Gunnera manicata]
Length = 680
Score = 165 bits (418), Expect = 1e-38
Identities = 76/82 (92%), Positives = 81/82 (98%)
Frame = +3
Query: 6 IDLNSPLWLRWRLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVKSVKKEILCIYIRTT 185
I+L+SPLWLRWRLDQRVIASRE PIEVHYESLGTYHEIYGHYLIV+SVKKEILCIYIRTT
Sbjct: 596 INLDSPLWLRWRLDQRVIASREVPIEVHYESLGTYHEIYGHYLIVRSVKKEILCIYIRTT 655
Query: 186 IGHISFYREIEEALQGFCRACS 251
+GHISFYREIEEA+QGFCRACS
Sbjct: 656 VGHISFYREIEEAIQGFCRACS 677
>ref|YP_001671674.1| RNA polymerase beta' subunit [Carica papaya]
gi|212288463|sp|B1A926.1|RPOC1_CARPA RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|166344123|gb|ABY86773.1| RNA polymerase beta' chain
[Carica papaya]
Length = 680
Score = 165 bits (417), Expect = 1e-38
Identities = 76/83 (91%), Positives = 82/83 (98%)
Frame = +3
Query: 3 RIDLNSPLWLRWRLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVKSVKKEILCIYIRT 182
RI+L+SPLWLRW+LDQRVIASREAPIEVHYESLGTYHEIYGHYLIV+SVKKEILCIYIRT
Sbjct: 595 RINLDSPLWLRWQLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVRSVKKEILCIYIRT 654
Query: 183 TIGHISFYREIEEALQGFCRACS 251
T+GHIS YREIEEA+QGFCRACS
Sbjct: 655 TVGHISLYREIEEAIQGFCRACS 677
>ref|YP_740556.1| RNA polymerase beta [Platanus occidentalis]
gi|122166044|sp|Q09G55.1|RPOC1_PLAOC RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|114054375|gb|ABI49769.1| RNA polymerase beta
[Platanus occidentalis]
Length = 682
Score = 164 bits (415), Expect = 2e-38
Identities = 76/83 (91%), Positives = 81/83 (97%)
Frame = +3
Query: 3 RIDLNSPLWLRWRLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVKSVKKEILCIYIRT 182
RI+L+SPLWLRWRLDQRVIASRE PIEV YESLGTYHEIYGHYLIV+SVKKEILCIYIRT
Sbjct: 597 RINLDSPLWLRWRLDQRVIASREVPIEVQYESLGTYHEIYGHYLIVRSVKKEILCIYIRT 656
Query: 183 TIGHISFYREIEEALQGFCRACS 251
T+GHISFYREIEEA+QGFCRACS
Sbjct: 657 TVGHISFYREIEEAIQGFCRACS 679
>ref|YP_009004035.1| RNA polymerase beta [Cucumis hystrix] gi|586598677|gb|AHJ61377.1|
RNA polymerase beta [Cucumis hystrix]
Length = 681
Score = 163 bits (412), Expect = 5e-38
Identities = 75/83 (90%), Positives = 82/83 (98%)
Frame = +3
Query: 3 RIDLNSPLWLRWRLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVKSVKKEILCIYIRT 182
RI+L+SPLWLRWRLDQRVIASREAPIEVHYESLGT+HEIYG+YLIVKS+KKEILCIYIRT
Sbjct: 596 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 655
Query: 183 TIGHISFYREIEEALQGFCRACS 251
T+GHIS YREIEEA+QGFCRACS
Sbjct: 656 TVGHISLYREIEEAIQGFCRACS 678
>gb|AHE41669.1| RNA polymerase beta' subunit (chloroplast) [Paeonia obovata]
Length = 1392
Score = 163 bits (412), Expect = 5e-38
Identities = 82/82 (100%), Positives = 82/82 (100%)
Frame = +3
Query: 435 MEVLMAERANLVFHNKVIDRAAMKRLISRLIDHFGMAYTSHILDQVKTLGFHQATATSIS 614
MEVLMAERANLVFHNKVIDRAAMKRLISRLIDHFGMAYTSHILDQVKTLGFHQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDRAAMKRLISRLIDHFGMAYTSHILDQVKTLGFHQATATSIS 60
Query: 615 LGIDDLLTIPSKGWLVQDAEQQ 680
LGIDDLLTIPSKGWLVQDAEQQ
Sbjct: 61 LGIDDLLTIPSKGWLVQDAEQQ 82
>gb|AAZ94642.1| RNA polymerase beta I subunit [Cucumis sativus]
Length = 687
Score = 163 bits (412), Expect = 5e-38
Identities = 75/83 (90%), Positives = 82/83 (98%)
Frame = +3
Query: 3 RIDLNSPLWLRWRLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVKSVKKEILCIYIRT 182
RI+L+SPLWLRWRLDQRVIASREAPIEVHYESLGT+HEIYG+YLIVKS+KKEILCIYIRT
Sbjct: 602 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 661
Query: 183 TIGHISFYREIEEALQGFCRACS 251
T+GHIS YREIEEA+QGFCRACS
Sbjct: 662 TVGHISLYREIEEAIQGFCRACS 684
>ref|YP_004841774.1| RNA polymerase beta [Cucumis melo subsp. melo]
gi|344030482|gb|AEM76883.1| RNA polymerase beta [Cucumis
melo subsp. melo]
Length = 680
Score = 163 bits (412), Expect = 5e-38
Identities = 75/83 (90%), Positives = 82/83 (98%)
Frame = +3
Query: 3 RIDLNSPLWLRWRLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVKSVKKEILCIYIRT 182
RI+L+SPLWLRWRLDQRVIASREAPIEVHYESLGT+HEIYG+YLIVKS+KKEILCIYIRT
Sbjct: 595 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 654
Query: 183 TIGHISFYREIEEALQGFCRACS 251
T+GHIS YREIEEA+QGFCRACS
Sbjct: 655 TVGHISLYREIEEAIQGFCRACS 677
>ref|YP_247590.2| RNA polymerase beta' subunit [Cucumis sativus]
Length = 680
Score = 163 bits (412), Expect = 5e-38
Identities = 75/83 (90%), Positives = 82/83 (98%)
Frame = +3
Query: 3 RIDLNSPLWLRWRLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVKSVKKEILCIYIRT 182
RI+L+SPLWLRWRLDQRVIASREAPIEVHYESLGT+HEIYG+YLIVKS+KKEILCIYIRT
Sbjct: 595 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 654
Query: 183 TIGHISFYREIEEALQGFCRACS 251
T+GHIS YREIEEA+QGFCRACS
Sbjct: 655 TVGHISLYREIEEAIQGFCRACS 677
>sp|Q4VZP2.3|RPOC1_CUCSA RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|115432795|gb|ABI97408.1| RNA polymerase beta' subunit
[Cucumis sativus] gi|115498294|gb|ABI98736.1| RNA
polymerase beta [Cucumis sativus]
Length = 680
Score = 163 bits (412), Expect = 5e-38
Identities = 75/83 (90%), Positives = 82/83 (98%)
Frame = +3
Query: 3 RIDLNSPLWLRWRLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVKSVKKEILCIYIRT 182
RI+L+SPLWLRWRLDQRVIASREAPIEVHYESLGT+HEIYG+YLIVKS+KKEILCIYIRT
Sbjct: 595 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 654
Query: 183 TIGHISFYREIEEALQGFCRACS 251
T+GHIS YREIEEA+QGFCRACS
Sbjct: 655 TVGHISLYREIEEAIQGFCRACS 677
>emb|CAJ00749.1| RNA polymerase beta chain [Cucumis sativus]
Length = 687
Score = 163 bits (412), Expect = 5e-38
Identities = 75/83 (90%), Positives = 82/83 (98%)
Frame = +3
Query: 3 RIDLNSPLWLRWRLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVKSVKKEILCIYIRT 182
RI+L+SPLWLRWRLDQRVIASREAPIEVHYESLGT+HEIYG+YLIVKS+KKEILCIYIRT
Sbjct: 602 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 661
Query: 183 TIGHISFYREIEEALQGFCRACS 251
T+GHIS YREIEEA+QGFCRACS
Sbjct: 662 TVGHISLYREIEEAIQGFCRACS 684
>ref|YP_008994386.1| RNA polymerase beta (chloroplast) [Viviania marifolia]
gi|540067463|gb|AGV02815.1| RNA polymerase beta
(chloroplast) [Viviania marifolia]
Length = 690
Score = 162 bits (410), Expect = 9e-38
Identities = 73/83 (87%), Positives = 80/83 (96%)
Frame = +3
Query: 3 RIDLNSPLWLRWRLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVKSVKKEILCIYIRT 182
+I +SPLWLRWRLDQR+IASREAP+EVHYESLGTYHEIYGHYLIV+SVKKEILCIYIRT
Sbjct: 605 KIHFDSPLWLRWRLDQRIIASREAPVEVHYESLGTYHEIYGHYLIVRSVKKEILCIYIRT 664
Query: 183 TIGHISFYREIEEALQGFCRACS 251
T+GHIS YREIEEA+QGFCRACS
Sbjct: 665 TVGHISLYREIEEAIQGFCRACS 687
>gb|ADH94334.1| RNA polymerase beta subunit [Syzygium cumini]
Length = 689
Score = 162 bits (410), Expect = 9e-38
Identities = 73/83 (87%), Positives = 81/83 (97%)
Frame = +3
Query: 3 RIDLNSPLWLRWRLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVKSVKKEILCIYIRT 182
RI+L+SPLWLRWRLDQRVIASRE PIE+HYESLGTYHEIYGHYLIV+SVKKEI+CIYIRT
Sbjct: 604 RINLDSPLWLRWRLDQRVIASREVPIEIHYESLGTYHEIYGHYLIVRSVKKEIICIYIRT 663
Query: 183 TIGHISFYREIEEALQGFCRACS 251
T+GHIS +REIEEA+QGFCRACS
Sbjct: 664 TVGHISLFREIEEAIQGFCRACS 686