BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia24_contig00022142
         (1094 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr...   180   8e-43
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr...   177   9e-42
emb|CBI28010.3| unnamed protein product [Vitis vinifera]              135   4e-29
ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polyme...   134   7e-29
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   132   3e-28
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme...   131   4e-28
gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus no...   129   3e-27
gb|EXB59778.1| NADP-dependent malic enzyme [Morus notabilis]          128   5e-27
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme...   126   1e-26
ref|XP_004288888.1| PREDICTED: probable RNA-dependent RNA polyme...   123   2e-25
ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polyme...   118   4e-24
gb|AHL27588.1| RNA-dependent RNA polymerase 5 [Salvia miltiorrhiza]   118   5e-24
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu...   115   2e-23
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu...   114   7e-23
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu...   112   4e-22
ref|XP_002883965.1| RNA-dependent RNA polymerase family protein ...   105   4e-20
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme...   104   6e-20
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid...   104   6e-20
gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]            104   6e-20
ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Caps...   100   1e-18

>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843309|ref|XP_006475556.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
            sinensis] gi|557554497|gb|ESR64511.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1015

 Score =  180 bits (457), Expect = 8e-43
 Identities = 106/244 (43%), Positives = 139/244 (56%)
 Frame = +1

Query: 361  VSLSPSVEQLLQDICTEQSQFPPDKEARLMLASLGEEASLKILRTIAGAKIRQTFSGFIK 540
            VSL  SVEQL+  I TEQ++ PPD  AR  LASLGE+A+L +LRTIA  KI+ +FSG+I 
Sbjct: 13   VSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKYSFSGYIN 72

Query: 541  YLAKQATSSSPVPSQKIAPSSPCNFASPVKRQKTAPLSPSSFASPVSRKITSFYSSSNQT 720
            YL K+                  N  SP+KR   +P SP    SPV+       +    T
Sbjct: 73   YLVKKRN----------------NNGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGT 116

Query: 721  PASASYSPLILQGREEAAHSSFPEHLTGSSFLTCDKASKQAFSPQLVALGELEFRKAFLI 900
                  SP+  Q    +  SS    +             +A  PQ VALGELEFRKAFLI
Sbjct: 117  DYVVKQSPVADQQPRGSPMSSISHAMR-----------HRASIPQYVALGELEFRKAFLI 165

Query: 901  LSYTGGKRLEDVISAEEIRGLENLPMERFEFHIWNAMGKNNIEKEERSKAVDWDSGKSYL 1080
            LSY G   LE+VI+A+EIRG+ +L M RFE  +W  +G+ NI +E+R  ++ WDSGK+++
Sbjct: 166  LSYIGENSLEEVITADEIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHM 225

Query: 1081 YHCH 1092
            YHCH
Sbjct: 226  YHCH 229


>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843311|ref|XP_006475557.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
            sinensis] gi|557554498|gb|ESR64512.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1013

 Score =  177 bits (448), Expect = 9e-42
 Identities = 106/244 (43%), Positives = 141/244 (57%)
 Frame = +1

Query: 361  VSLSPSVEQLLQDICTEQSQFPPDKEARLMLASLGEEASLKILRTIAGAKIRQTFSGFIK 540
            VSL  SVEQL+  I TEQ++ PPD  AR  LASLGE+A+L +LRTIA  KI+ +FSG+I 
Sbjct: 13   VSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKYSFSGYIN 72

Query: 541  YLAKQATSSSPVPSQKIAPSSPCNFASPVKRQKTAPLSPSSFASPVSRKITSFYSSSNQT 720
            YL K+                  N  SP+KR   +P SP    SPV+  +T+    +   
Sbjct: 73   YLVKKRN----------------NNGSPLKRVCFSPSSPQQNRSPVT--VTTVRLLNLPQ 114

Query: 721  PASASYSPLILQGREEAAHSSFPEHLTGSSFLTCDKASKQAFSPQLVALGELEFRKAFLI 900
                  SP+  Q    +  SS    +             +A  PQ VALGELEFRKAFLI
Sbjct: 115  DYVVKQSPVADQQPRGSPMSSISHAMR-----------HRASIPQYVALGELEFRKAFLI 163

Query: 901  LSYTGGKRLEDVISAEEIRGLENLPMERFEFHIWNAMGKNNIEKEERSKAVDWDSGKSYL 1080
            LSY G   LE+VI+A+EIRG+ +L M RFE  +W  +G+ NI +E+R  ++ WDSGK+++
Sbjct: 164  LSYIGENSLEEVITADEIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHM 223

Query: 1081 YHCH 1092
            YHCH
Sbjct: 224  YHCH 227


>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  135 bits (339), Expect = 4e-29
 Identities = 65/110 (59%), Positives = 83/110 (75%)
 Frame = +1

Query: 763  EEAAHSSFPEHLTGSSFLTCDKASKQAFSPQLVALGELEFRKAFLILSYTGGKRLEDVIS 942
            + A+HS  P+HL  S   T  KA +QA SPQLVALGELEFRKAFLILSY G KR ED++S
Sbjct: 71   DAASHSPTPKHLISSPSSTPKKARRQASSPQLVALGELEFRKAFLILSYIGDKRPEDLLS 130

Query: 943  AEEIRGLENLPMERFEFHIWNAMGKNNIEKEERSKAVDWDSGKSYLYHCH 1092
            AEEI  L+NLPM  FE  +WN +G+  I++E+R ++ DWDS K+++YHCH
Sbjct: 131  AEEILKLKNLPMGVFETEVWNNLGRKFIKEEDRQRSFDWDSDKTHIYHCH 180



 Score = 74.7 bits (182), Expect = 6e-11
 Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 3/99 (3%)
 Frame = +1

Query: 361 VSLSPSVEQLLQDICTEQSQFPPDKEARLMLASLGEEASLKILRTIAGAKIRQTFSGFIK 540
           VSL  SVEQ+LQ ICTEQ Q PP+   R  LASLGEE++L++LR I+  KIR   S  I 
Sbjct: 3   VSLPHSVEQMLQRICTEQQQPPPEAHTRRNLASLGEESTLELLRKISHLKIR-NLSALIN 61

Query: 541 YL---AKQATSSSPVPSQKIAPSSPCNFASPVKRQKTAP 648
           Y+   A Q  ++S  P+ K   SSP +     +RQ ++P
Sbjct: 62  YMVGKAAQGDAASHSPTPKHLISSPSSTPKKARRQASSP 100


>ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            lycopersicum]
          Length = 759

 Score =  134 bits (337), Expect = 7e-29
 Identities = 92/271 (33%), Positives = 141/271 (52%), Gaps = 27/271 (9%)
 Frame = +1

Query: 361  VSLSPSVEQLLQDICTEQSQFPPDKEARLMLASLGEEASLKILRTIAGAKIRQTFSGFIK 540
            V L  SV+Q++  IC ++ Q  PD   R +L ++GEE SL IL  I+  +I++T SGFI 
Sbjct: 12   VELPSSVQQMINQICKKERQNSPDDTVRRLLVAIGEERSLYILNEISKCQIKKTLSGFIV 71

Query: 541  YLAKQATSSSPVPSQKIAPSSPCNFASPVKRQKTAPLSPSSFASPVSRKITSFYSSSNQT 720
            ++AK           K   S    F      ++    + S + SP  R+  +  SS N +
Sbjct: 72   FMAK-----------KYYQSETQQFYQKQNHEQPVLSAESFYHSPQIRR--NSLSSPNSS 118

Query: 721  PASASYSPL---ILQGREEAAHSSF-----------PEHLTGSSFLTC----------DK 828
             +S ++SP    I Q R+    +S            P     +SF  C          D+
Sbjct: 119  CSSVNFSPRNRPIFQDRDIVGDTSDSPTSGPRIPSPPLSPVTTSFQKCHYDPSPSKFRDR 178

Query: 829  ASKQAFSPQLVALGELEFRKAFLILSYTGGKRLEDVISAEEIRGLENL---PMERFEFHI 999
            AS +  S QL+AL +LEFRK FLIL+Y G +++EDVI+  ++  + ++   PM  FE +I
Sbjct: 179  ASTRGISEQLLALNKLEFRKFFLILNYIGRRKVEDVITLHDVGDILDMIYQPMSHFESYI 238

Query: 1000 WNAMGKNNIEKEERSKAVDWDSGKSYLYHCH 1092
            WN  G +  E  +R + +DWDSG+++LYHCH
Sbjct: 239  WNKYG-HLCEHNKRVQYLDWDSGRTHLYHCH 268


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  132 bits (331), Expect = 3e-28
 Identities = 64/110 (58%), Positives = 82/110 (74%)
 Frame = +1

Query: 763  EEAAHSSFPEHLTGSSFLTCDKASKQAFSPQLVALGELEFRKAFLILSYTGGKRLEDVIS 942
            + A+HS  P+HL  S   T  KA +QA SPQLVALGELEFRKAFLILSY G  R ED++S
Sbjct: 71   DAASHSPTPKHLISSPSSTPKKARRQASSPQLVALGELEFRKAFLILSYIGELRPEDLLS 130

Query: 943  AEEIRGLENLPMERFEFHIWNAMGKNNIEKEERSKAVDWDSGKSYLYHCH 1092
            AEEI  L+NLPM  FE  +WN +G+  I++E+R ++ DWDS K+++YHCH
Sbjct: 131  AEEILKLKNLPMGVFETEVWNNLGRKFIKEEDRQRSFDWDSDKTHIYHCH 180



 Score = 74.7 bits (182), Expect = 6e-11
 Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 3/99 (3%)
 Frame = +1

Query: 361 VSLSPSVEQLLQDICTEQSQFPPDKEARLMLASLGEEASLKILRTIAGAKIRQTFSGFIK 540
           VSL  SVEQ+LQ ICTEQ Q PP+   R  LASLGEE++L++LR I+  KIR   S  I 
Sbjct: 3   VSLPHSVEQMLQRICTEQQQPPPEAHTRRNLASLGEESTLELLRKISHLKIR-NLSALIN 61

Query: 541 YL---AKQATSSSPVPSQKIAPSSPCNFASPVKRQKTAP 648
           Y+   A Q  ++S  P+ K   SSP +     +RQ ++P
Sbjct: 62  YMVGKAAQGDAASHSPTPKHLISSPSSTPKKARRQASSP 100


>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            tuberosum]
          Length = 911

 Score =  131 bits (330), Expect = 4e-28
 Identities = 93/247 (37%), Positives = 131/247 (53%), Gaps = 8/247 (3%)
 Frame = +1

Query: 376  SVEQLLQDICTEQSQFPPDKEARLMLASLGEEASLKILRTIAGAKIRQTFSGFIKYLAKQ 555
            SVE +L+ IC EQ Q P     R  L+S+GE+ SL+IL+ I+   I+++ S F+ YL  +
Sbjct: 23   SVETMLEKICNEQGQKPLGTGIRRRLSSIGEKGSLEILKIISSRPIKKSLSAFLVYLIDR 82

Query: 556  ---ATSSSPVPSQKIAPSSPCNFASPVKRQKTAPLSPSSFASPVSRKITSFYSSSNQTPA 726
                 SSSP             F SP+KR      SP  F SP  +++     S ++   
Sbjct: 83   YPDCLSSSP-------------FNSPLKRSS----SPLLFPSPEGKRVQGESPSKSKLEM 125

Query: 727  S--ASYSPLILQGREEAAHSSFPEHLTGSSFLTCDKASKQAFSPQLVALGELEFRKAFLI 900
               A  SP     ++ A   SF E    +    C + S    S QL+ L ELEFRK FL+
Sbjct: 126  GFLACASP-----QKVARQLSFREEPESN----CRRTSPNV-SQQLMILNELEFRKLFLV 175

Query: 901  LSYTGGKRLEDVIS---AEEIRGLENLPMERFEFHIWNAMGKNNIEKEERSKAVDWDSGK 1071
            LSY G K+LED++S   A++I   +NL M  FE  IWNA GK    + +RSK VDW+  K
Sbjct: 176  LSYIGCKKLEDIVSPQIADDIVRKKNLSMTDFESEIWNAFGKAYYAESDRSKYVDWNCRK 235

Query: 1072 SYLYHCH 1092
            +++Y+CH
Sbjct: 236  THIYYCH 242


>gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus notabilis]
          Length = 529

 Score =  129 bits (323), Expect = 3e-27
 Identities = 86/245 (35%), Positives = 119/245 (48%), Gaps = 1/245 (0%)
 Frame = +1

Query: 361  VSLSPSVEQLLQDICTEQSQFPPDKEARLMLASLGEEASLKILRTIAGAKIR-QTFSGFI 537
            V L  SV +LL+ IC E+SQ PPD E R  LAS GE+ +L++LRTIA  K + ++  GF+
Sbjct: 16   VPLPRSVLELLERICAERSQPPPDAELRRKLASAGEDEALRVLRTIADCKTKIKSLHGFV 75

Query: 538  KYLAKQATSSSPVPSQKIAPSSPCNFASPVKRQKTAPLSPSSFASPVSRKITSFYSSSNQ 717
             YL +Q                                 P S +SP              
Sbjct: 76   TYLLRQQPP------------------------------PPSLSSP-------------- 91

Query: 718  TPASASYSPLILQGREEAAHSSFPEHLTGSSFLTCDKASKQAFSPQLVALGELEFRKAFL 897
                 S SP+    R  ++  +F               S+ A   Q+ ALGELEFRK FL
Sbjct: 92   -----SRSPVPENSRPSSSPGTFAN-------------SQGANGAQMEALGELEFRKQFL 133

Query: 898  ILSYTGGKRLEDVISAEEIRGLENLPMERFEFHIWNAMGKNNIEKEERSKAVDWDSGKSY 1077
            IL+Y G   L+ V +AEEIR L+NL M +FE  +W   G+  +++E+R    DWDSGK++
Sbjct: 134  ILNYIGRNELQSVTTAEEIRSLKNLSMVQFEKQVWQRFGEKYVDQEDRRIYHDWDSGKTH 193

Query: 1078 LYHCH 1092
            +Y CH
Sbjct: 194  IYRCH 198


>gb|EXB59778.1| NADP-dependent malic enzyme [Morus notabilis]
          Length = 1017

 Score =  128 bits (321), Expect = 5e-27
 Identities = 87/244 (35%), Positives = 126/244 (51%)
 Frame = +1

Query: 361  VSLSPSVEQLLQDICTEQSQFPPDKEARLMLASLGEEASLKILRTIAGAKIRQTFSGFIK 540
            V L  SV++L+  IC +QSQ  P+ + R  LA  GEE +L+ILRTIA  KI+++ SGFI 
Sbjct: 8    VPLPRSVDELIDKICADQSQAHPEAKLRWRLAQRGEEGALEILRTIATTKIKRSLSGFII 67

Query: 541  YLAKQATSSSPVPSQKIAPSSPCNFASPVKRQKTAPLSPSSFASPVSRKITSFYSSSNQT 720
            +L ++++S    P +++  S                 SP+S  S VS K+ +        
Sbjct: 68   HLLERSSSPRSTPPKRLRLSD----------------SPTS-GSGVSDKVITVQC----- 105

Query: 721  PASASYSPLILQGREEAAHSSFPEHLTGSSFLTCDKASKQAFSPQLVALGELEFRKAFLI 900
                 Y+P   +G  EA             FL       +A    + ALGELEFRK FLI
Sbjct: 106  -----YAPP--KGATEAVSRCL--------FLEAPTEGGEAV---MAALGELEFRKQFLI 147

Query: 901  LSYTGGKRLEDVISAEEIRGLENLPMERFEFHIWNAMGKNNIEKEERSKAVDWDSGKSYL 1080
            L+Y G   L+ V+ AEEIR L+ L M  FE  +W+  G   ++ ++R    DWD  +++L
Sbjct: 148  LNYIGSNELQTVLRAEEIRNLKGLQMVEFERKLWDRFGVRYVDPQDRVVNNDWDPERTHL 207

Query: 1081 YHCH 1092
            YHCH
Sbjct: 208  YHCH 211


>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            tuberosum]
          Length = 1110

 Score =  126 bits (317), Expect = 1e-26
 Identities = 95/314 (30%), Positives = 148/314 (47%), Gaps = 70/314 (22%)
 Frame = +1

Query: 361  VSLSPSVEQLLQDICTEQSQFPPDKEARLMLASLGEEASLKILRTIAGAKIRQTFSGFIK 540
            V L  SV+Q++  IC ++ Q  PD + R +L ++GEE SL ILR I+  +I++T SGFI 
Sbjct: 12   VELPHSVQQMINQICKKERQNSPDDKVRRLLVAIGEERSLCILREISKCQIKKTLSGFIV 71

Query: 541  YLAKQATSSS------------PVPSQKI-------------APSSPCNFASPVKRQK-- 639
            ++AK+   S             PVPS +              +P+S C+  +   R +  
Sbjct: 72   FMAKKYYQSETQQFYQKQNYEEPVPSAESFYHSPQIRRSSLSSPNSSCSSVNFSPRNRPI 131

Query: 640  ---------------TAPLSPSSFASPVSRKI---------TSFYSSSNQTPASASYSPL 747
                           +AP  PS   SPV+            ++F   ++    S     L
Sbjct: 132  FQDNDIVGDASDSPTSAPRIPSPPMSPVTTSFQRDHYDPRPSTFRDRASTRGISEQLLAL 191

Query: 748  ILQGREEAAHSSFP----------------EHLTGSSFLTCDKASKQAFSPQLVALGELE 879
             + G    + +S P                +H         D+AS +  S QL+AL +LE
Sbjct: 192  NIVGDASDSPTSAPRIPSPPMSPVTTSFQRDHYDPRPSTFRDRASTRGISEQLLALSKLE 251

Query: 880  FRKAFLILSYTGGKRLEDVISAEEIRGLENL---PMERFEFHIWNAMGKNNIEKEERSKA 1050
            FRK FLIL+Y G +++EDVI   ++  + ++   PM  FE +IWN  G +  E  +R + 
Sbjct: 252  FRKFFLILNYIGRRKVEDVIMLHDVGDILDMIYQPMSHFESYIWNKYG-HLCEHNKRVQY 310

Query: 1051 VDWDSGKSYLYHCH 1092
            +DWDSG+++LYHCH
Sbjct: 311  LDWDSGRTHLYHCH 324


>ref|XP_004288888.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
            vesca subsp. vesca]
          Length = 1068

 Score =  123 bits (308), Expect = 2e-25
 Identities = 97/300 (32%), Positives = 138/300 (46%), Gaps = 58/300 (19%)
 Frame = +1

Query: 367  LSPSVEQLLQDICTEQSQFPPDKEARLMLASLGEEASLKILRTIAG--AKIRQTFSGFIK 540
            L  SV++ L  +C  + Q  PD+  R  L+ L ++ +L +L  I    A I+ T   FI 
Sbjct: 7    LPNSVQEALNRLCEVKKQPQPDEGVRRKLSLLSKQDALYVLEQIHNDRAPIKNTLGAFIV 66

Query: 541  YL------AKQATSSSP-----VPSQKIAPSSPCNFASPVKRQKTAPL-SPSSFASPVSR 684
            ++      A  ++SSSP       S +I+PS+  +     +     PL S +S+ S    
Sbjct: 67   FMIGKLENASSSSSSSPRSVKTASSYQISPSASSSSQEHHQDYDREPLYSSASYQSYSCP 126

Query: 685  KITS--FYSS-------SNQTPAS--------ASYSPLILQGREEAAHSSFPEHLTGSSF 813
             +T   FYSS       SN  PA+        +S SP  +      A+  F E   G   
Sbjct: 127  SVTDAPFYSSFQSQGETSNPLPATLCNGKSLCSSPSPYEILSAPSDAYRQFCERFQGVHI 186

Query: 814  LTCDKASKQAFSP---------------------------QLVALGELEFRKAFLILSYT 912
                  S    +P                            L ALGELEFRK FLILSY 
Sbjct: 187  SPFQTPSASPVTPVQLYKSFQGETVAHSPVLYHPADHGQAHLEALGELEFRKQFLILSYA 246

Query: 913  GGKRLEDVISAEEIRGLENLPMERFEFHIWNAMGKNNIEKEERSKAVDWDSGKSYLYHCH 1092
            GG +L+DVI AE+IR  +NLPM +FE  +W+ +G  N+ K +R   VDWDSG+++ Y CH
Sbjct: 247  GGIKLKDVIDAEDIRNWKNLPMVKFETTVWHVLGDENVGKADRLLNVDWDSGRTHFYECH 306


>ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer
            arietinum]
          Length = 997

 Score =  118 bits (296), Expect = 4e-24
 Identities = 88/251 (35%), Positives = 129/251 (51%), Gaps = 1/251 (0%)
 Frame = +1

Query: 340  MADSSTAVSLSPSVEQLLQDICTEQSQFPPDKEARLMLASLGEEASLKILRTIAGAKIRQ 519
            MAD S  V+L  SVE L+  I  +QSQ P D   R  LA LGE+ +L+IL  I+   I++
Sbjct: 1    MADQS--VNLPSSVENLINQIREQQSQPPLDSSIRRNLAELGEQKALQILYYISTQPIKR 58

Query: 520  TFSGFIKYLAKQATSSSPVPSQKIAPSSPCNFASPVKRQKTAPLSPSSFASPVSRKITSF 699
            + + F  Y+  Q  S  P PS+   PSS     S  + Q  +   P S  S +   + S 
Sbjct: 59   SLNAFTVYMINQHRSP-PSPSR---PSS-----SQSQSQSQSQSRPYSLQSQLLSHLQS- 108

Query: 700  YSSSNQTPASASYSPLILQGREEAAHSSFPEHLTGSSFLTCDKASKQAFSPQLVALGELE 879
                         SPL L+ +   + S+ P                   S  L ALGELE
Sbjct: 109  -----------RPSPLPLRSQSLPSSSTAPP----------------PHSDVLTALGELE 141

Query: 880  FRKAFLILSYTGGKRLEDVISAEEIRGLENLPMERFEFHIWNAMGKNNIEK-EERSKAVD 1056
            FRK+FL++SY G + +E+V++AE +R L+ L M+ FE  IW  +G+  IE+  +R   +D
Sbjct: 142  FRKSFLLMSYAGRENIENVVTAEYVRSLKELTMKNFEKEIWETVGQKYIERPTDRLVYLD 201

Query: 1057 WDSGKSYLYHC 1089
            WDSG++++Y C
Sbjct: 202  WDSGRTHIYQC 212


>gb|AHL27588.1| RNA-dependent RNA polymerase 5 [Salvia miltiorrhiza]
          Length = 898

 Score =  118 bits (295), Expect = 5e-24
 Identities = 85/251 (33%), Positives = 120/251 (47%), Gaps = 7/251 (2%)
 Frame = +1

Query: 361  VSLSPSVEQLLQDICTEQSQ--FPPDKEARLMLASLGEEASLKILRTIAGAKIR-QTFSG 531
            V L  SVE  ++ I  E+ Q   P + + R ML  +GE+ SLK+L  I  +K   ++F G
Sbjct: 16   VRLPESVEAAIERIAVEKQQPPLPRNSDVRKMLREIGEQPSLKLLNIIHSSKTPIKSFGG 75

Query: 532  FIKYLAKQATSSSPVPSQKIAPSSPCNFASPVKRQKTAPLSPSSFASPVSRKITSFYSS- 708
            F+  L +              P+      SP K       SPSS +  V+R   S  SS 
Sbjct: 76   FVSKLVRT-----------YYPNQAAAIPSPYKSPPPTIYSPSSISPNVARNGESLQSSL 124

Query: 709  SNQTPASASYSPLILQGREEAAHSSFPEHLTGSSFLTCDKASKQAFSPQLVALGELEFRK 888
            SN            L   +EA  S               +    A SPQL+ L +LEFRK
Sbjct: 125  SNLQGTGFQNISCQLSFEDEALES---------------RNESMAISPQLLTLNKLEFRK 169

Query: 889  AFLILSYTGGKRLEDVISAEE---IRGLENLPMERFEFHIWNAMGKNNIEKEERSKAVDW 1059
             FL+LSY  G++LEDV++ EE   +   + LPM  FE  IW+  G       +RS+ +DW
Sbjct: 170  LFLLLSYANGQKLEDVLTTEEANQVYANKALPMPEFERLIWDKFGYRYCNGLDRSQHLDW 229

Query: 1060 DSGKSYLYHCH 1092
            DSGK+++Y+CH
Sbjct: 230  DSGKTHIYNCH 240


>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
            gi|550336519|gb|ERP59562.1| hypothetical protein
            POPTR_0006s17780g [Populus trichocarpa]
          Length = 866

 Score =  115 bits (289), Expect = 2e-23
 Identities = 54/91 (59%), Positives = 73/91 (80%), Gaps = 2/91 (2%)
 Frame = +1

Query: 826  KASKQAFSPQLVALGELEFRKAFLILSYTGGKRLEDVISAEEIRGLENLPMERFEFHIWN 1005
            + S+   S  LVALGELEFRKAFLIL+Y GGK LE+V+SA++IRG ++LPME FE  IW+
Sbjct: 7    RGSESTTSQHLVALGELEFRKAFLILNYLGGKNLEEVVSADQIRGYKDLPMETFESKIWD 66

Query: 1006 AMG--KNNIEKEERSKAVDWDSGKSYLYHCH 1092
            A G  ++ I++E+R K +DWDSGK+++YHCH
Sbjct: 67   AFGCRRDYIKEEDRVKYLDWDSGKAHIYHCH 97


>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334279|gb|ERP58266.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 899

 Score =  114 bits (285), Expect = 7e-23
 Identities = 58/114 (50%), Positives = 78/114 (68%), Gaps = 4/114 (3%)
 Frame = +1

Query: 763  EEAAHSSFPEHLTGSSFLTCDK--ASKQAFSPQLVALGELEFRKAFLILSYTGGKRLEDV 936
            +  A S     L GSS +   +   ++   S  LVALGELEFRKAFLILSY GGK LE+V
Sbjct: 6    DSGAQSPISLKLEGSSTMDSQRQRGNESTTSQHLVALGELEFRKAFLILSYLGGKNLEEV 65

Query: 937  ISAEEIRGLENLPMERFEFHIWNAMG--KNNIEKEERSKAVDWDSGKSYLYHCH 1092
            +S ++IRG ++LPM  FE  IW A G  ++ I++E+R K +DWDSGK+++YHCH
Sbjct: 66   VSVDQIRGYKDLPMRTFESKIWEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCH 119


>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334280|gb|ERP58267.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 877

 Score =  112 bits (279), Expect = 4e-22
 Identities = 52/91 (57%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
 Frame = +1

Query: 826  KASKQAFSPQLVALGELEFRKAFLILSYTGGKRLEDVISAEEIRGLENLPMERFEFHIWN 1005
            + ++   S  LVALGELEFRKAFLILSY GGK LE+V+S ++IRG ++LPM  FE  IW 
Sbjct: 7    RGNESTTSQHLVALGELEFRKAFLILSYLGGKNLEEVVSVDQIRGYKDLPMRTFESKIWE 66

Query: 1006 AMG--KNNIEKEERSKAVDWDSGKSYLYHCH 1092
            A G  ++ I++E+R K +DWDSGK+++YHCH
Sbjct: 67   AFGCRRDYIKEEDRVKYLDWDSGKTHIYHCH 97


>ref|XP_002883965.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329805|gb|EFH60224.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 934

 Score =  105 bits (261), Expect = 4e-20
 Identities = 82/250 (32%), Positives = 117/250 (46%), Gaps = 4/250 (1%)
 Frame = +1

Query: 355  TAVSLSPSVEQLLQDICTEQSQFPPDK-EARLMLASLGEEASLKILRTIAGAKIRQTFSG 531
            T ++L  SVE +L+ I  +  Q  P K E R  L+S+ EE +L+ LR +      +T  G
Sbjct: 13   TEIALLGSVETMLEKIYEKHKQHRPIKVETRRRLSSISEELALETLRKVFNMPYVKTLDG 72

Query: 532  FIKYLAKQATS--SSPVPSQKIAPSSPCNFASPVKRQKTAPLSPSSFASPVSRKITSFYS 705
             I Y    A +   S V   +      C     V                         S
Sbjct: 73   IIMYFVNNAATVDGSSVQCPRTPGKKSCRLFQDV-------------------------S 107

Query: 706  SSNQTPASASYSPLILQGREEAAHSSFPEHLTGSSFLTCDKASKQAFSPQLVALGELEFR 885
               +TP     SP  L+ REE   SS  +H+                 P L+ALGELEF+
Sbjct: 108  IDLETP-----SPKFLR-REENGGSS--KHI-----------------PPLLALGELEFK 142

Query: 886  KAFLILSYTGGKRL-EDVISAEEIRGLENLPMERFEFHIWNAMGKNNIEKEERSKAVDWD 1062
            KAFL+LSY GG+ L E+VIS +EIR  ++LPM  +E  +WN +G+     +ER + ++ D
Sbjct: 143  KAFLLLSYIGGESLVEEVISGDEIRKWKDLPMVEYEAEVWNRLGQRYCPPKERRRPLEGD 202

Query: 1063 SGKSYLYHCH 1092
            SGK++ Y CH
Sbjct: 203  SGKTHYYQCH 212


>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            lycopersicum]
          Length = 1011

 Score =  104 bits (260), Expect = 6e-20
 Identities = 85/229 (37%), Positives = 117/229 (51%), Gaps = 5/229 (2%)
 Frame = +1

Query: 376  SVEQLLQDICTEQSQFPPDKEARLMLASLGEEASLKILRTIAGAKIRQTFSGFIKYLAKQ 555
            SVE +L  IC EQ Q PP    R  L+S+GE+ SL++L+ I+   I+++ S F+ Y+  +
Sbjct: 19   SVETMLDRICKEQGQKPPCTGIRRRLSSIGEKGSLEMLKIISRRPIKKSLSAFLVYMIDR 78

Query: 556  ATSSSPVPSQKIAPSSPCNFASPVKRQKTAPLSPSSFASPVSRKITSFYSSSNQTPAS-- 729
                   P    + SSP N    +KR      SP  F SP  +++    SS ++      
Sbjct: 79   ------YPDCLSSSSSPFNCL--LKRSS----SPRLFPSPEGKRLQGESSSKSKLEMGLL 126

Query: 730  ASYSPLILQGREEAAHSSFPEHLTGSSFLTCDKASKQAFSPQLVALGELEFRKAFLILSY 909
            A  SP     ++ A   SF E    +    C + S    S QL+ L ELEFRK FL+LSY
Sbjct: 127  ACASP-----QKVARQLSFCEEPESN----CRRTSPYV-SQQLMILNELEFRKLFLVLSY 176

Query: 910  TGGKRLEDVIS---AEEIRGLENLPMERFEFHIWNAMGKNNIEKEERSK 1047
             G  +LEDVIS   A++I   +NL M  FE  IWNA GK      +RSK
Sbjct: 177  IGCNKLEDVISPQIADDIVRKKNLSMTDFESEIWNAFGKACYAVSDRSK 225


>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
            gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 3;
            Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
            3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 992

 Score =  104 bits (260), Expect = 6e-20
 Identities = 77/246 (31%), Positives = 125/246 (50%), Gaps = 2/246 (0%)
 Frame = +1

Query: 361  VSLSPSVEQLLQDICTEQS-QFPPDKEARLMLASLGEEASLKILRTIAGAKIRQTFSGFI 537
            ++L  SVE +L+ I  + + + P   E R  L+S+ EE +L+ LR +      +T  G I
Sbjct: 15   IALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFNKPYLKTLDGLI 74

Query: 538  KYLAKQATSSSPVPSQKIAPSSPCNFASPVKRQKTAPLSPSSFASPVSRKITSFYSSSNQ 717
             Y  K   +    P  +++P       SPV+    +P +P+  +   S+ +    S   +
Sbjct: 75   MYFVKGTVTVDGSP--RLSPGE-----SPVQ----SPRTPAKKSCRASQDV----SLDLE 119

Query: 718  TPASASYSPLILQGREEAAHSSFPEHLTGSSFLTCDKASKQAFSPQLVALGELEFRKAFL 897
            TP     SP  ++  E            GS ++           P L+ALGELEF+KAFL
Sbjct: 120  TP-----SPKFMKREENG----------GSKYI-----------PPLLALGELEFKKAFL 153

Query: 898  ILSYTGGKRL-EDVISAEEIRGLENLPMERFEFHIWNAMGKNNIEKEERSKAVDWDSGKS 1074
            +LSY GG+ L E+VIS ++IR  ++LPM  +E  +WN +G+     +ER + ++ DSG +
Sbjct: 154  LLSYIGGESLVEEVISGDQIRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRPLEGDSGMT 213

Query: 1075 YLYHCH 1092
            + Y CH
Sbjct: 214  HYYQCH 219


>gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
          Length = 966

 Score =  104 bits (260), Expect = 6e-20
 Identities = 77/246 (31%), Positives = 125/246 (50%), Gaps = 2/246 (0%)
 Frame = +1

Query: 361  VSLSPSVEQLLQDICTEQS-QFPPDKEARLMLASLGEEASLKILRTIAGAKIRQTFSGFI 537
            ++L  SVE +L+ I  + + + P   E R  L+S+ EE +L+ LR +      +T  G I
Sbjct: 15   IALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFNKPYLKTLDGLI 74

Query: 538  KYLAKQATSSSPVPSQKIAPSSPCNFASPVKRQKTAPLSPSSFASPVSRKITSFYSSSNQ 717
             Y  K   +    P  +++P       SPV+    +P +P+  +   S+ +    S   +
Sbjct: 75   MYFVKGTVTVDGSP--RLSPGE-----SPVQ----SPRTPAKKSCRASQDV----SLDLE 119

Query: 718  TPASASYSPLILQGREEAAHSSFPEHLTGSSFLTCDKASKQAFSPQLVALGELEFRKAFL 897
            TP     SP  ++  E            GS ++           P L+ALGELEF+KAFL
Sbjct: 120  TP-----SPKFMKREENG----------GSKYI-----------PPLLALGELEFKKAFL 153

Query: 898  ILSYTGGKRL-EDVISAEEIRGLENLPMERFEFHIWNAMGKNNIEKEERSKAVDWDSGKS 1074
            +LSY GG+ L E+VIS ++IR  ++LPM  +E  +WN +G+     +ER + ++ DSG +
Sbjct: 154  LLSYIGGESLVEEVISGDQIRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRPLEGDSGMT 213

Query: 1075 YLYHCH 1092
            + Y CH
Sbjct: 214  HYYQCH 219


>ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Capsella rubella]
            gi|482565607|gb|EOA29796.1| hypothetical protein
            CARUB_v10012890mg [Capsella rubella]
          Length = 998

 Score =  100 bits (249), Expect = 1e-18
 Identities = 83/248 (33%), Positives = 124/248 (50%), Gaps = 4/248 (1%)
 Frame = +1

Query: 361  VSLSPSVEQLLQDICTEQSQFPPDKEARLMLASLGEEASLKILRTIAGAK-IRQTFSGFI 537
            ++L+  VE LL+ I  +    P + E R  L+ + EE +L+ L  +  A  ++ T    I
Sbjct: 23   IALTGPVETLLEKIYGKHKHRPINLETRRKLSLISEELALEALSKVFNATYVKSTVDVLI 82

Query: 538  KYLAKQATS--SSPVPSQKIAPSSPCNFASPVKRQKT-APLSPSSFASPVSRKITSFYSS 708
            KY  K A +   SP PS            SPV+  +T    S  +F + VS  +      
Sbjct: 83   KYFVKDAATVDGSPRPSPD---------ESPVQSPRTPGKKSCRAFQAEVSLDL------ 127

Query: 709  SNQTPASASYSPLILQGREEAAHSSFPEHLTGSSFLTCDKASKQAFSPQLVALGELEFRK 888
              + P     SP +L+ REE   S+   H+                 P LVALGELEF+K
Sbjct: 128  --EIP-----SPKLLR-REETGGSN---HI-----------------PPLVALGELEFKK 159

Query: 889  AFLILSYTGGKRLEDVISAEEIRGLENLPMERFEFHIWNAMGKNNIEKEERSKAVDWDSG 1068
             FL+LSY GGK LE VIS ++IR  ++LPM  +E  +W  +G+    K+ER ++++ DS 
Sbjct: 160  MFLLLSYLGGKPLE-VISGDDIRQWKDLPMVSYEAEVWFQLGERYCSKKERRRSLEGDSE 218

Query: 1069 KSYLYHCH 1092
            K++ Y CH
Sbjct: 219  KTHYYQCH 226