BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia24_contig00017597
         (2492 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]             1243   0.0  
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...  1243   0.0  
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr...  1197   0.0  
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...  1185   0.0  
ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, put...  1179   0.0  
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put...  1179   0.0  
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun...  1178   0.0  
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...  1144   0.0  
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub...  1143   0.0  
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...  1140   0.0  
ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1125   0.0  
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no...  1120   0.0  
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1120   0.0  
gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus...  1100   0.0  
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...  1099   0.0  
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub...  1077   0.0  
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub...  1065   0.0  
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub...  1060   0.0  
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag...  1056   0.0  
ref|XP_007133762.1| hypothetical protein PHAVU_011G206900g [Phas...  1043   0.0  

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score = 1243 bits (3215), Expect = 0.0
 Identities = 628/838 (74%), Positives = 698/838 (83%), Gaps = 9/838 (1%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVD KLCLTY+DG STYSLREGS GHTFLRPGQVVHRRIMDGD VFINRPPTTHKHSLQA
Sbjct: 426  LVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQA 485

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQS  AKAEVLELFSVEKQLLSSH+G
Sbjct: 486  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQLLSSHSG 545

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTVLQIL 541
            +LNLQ             + YFL+KAA QQL MF S ++P+P LLK   SG  WT LQIL
Sbjct: 546  NLNLQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPCWTALQIL 605

Query: 542  QTALPVLFDSSGERHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSLQ 718
            QTALP  FD  GERH I +S I++VD+N++ L SLVNEIVTSIF EKGP EVLKFF+SLQ
Sbjct: 606  QTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLKFFDSLQ 665

Query: 719  PLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLR 898
            PLLMENLF+ GFSV LEDFS+P+ V QNIQ++++D+S LLY+LRS YNEL++LQ EN LR
Sbjct: 666  PLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQAENHLR 725

Query: 899  LEKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVL 1078
            L KVPVANFIL  S +GNLIDSKSDSA NKVVQQI FLG QLS+KGKFYSRTLVE MA L
Sbjct: 726  LTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLVEGMAYL 785

Query: 1079 FQTKHP-SGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKN 1255
            F++K+P  G DYPSG++GLI+SCFFHGLDPYEEMVHSIS+RE++VRSSRGL+EPGTLFKN
Sbjct: 786  FKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPGTLFKN 845

Query: 1256 LMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAY 1435
            LMAILRDVVICYDGTVRNVCSNSIIQFEY  K+    Q FFPAGEPVGVLAATAMSNPAY
Sbjct: 846  LMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMSNPAY 905

Query: 1436 KAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQENAAYLVKN 1615
            KAVLDSSPSSN+SWE+MKEILLC+V F ND IDRRVILYLNDC CGR+YC+ENAAYLVKN
Sbjct: 906  KAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKN 965

Query: 1616 QLKKVSLKDAAVEFMIEY-------RSSENDAGLVGHIHRNKELLKKFNITGHEVLDKCQ 1774
            QLKK SLKD AVEFMIEY        SSE   GLVGHIH NK LL+  N++  EV  KC+
Sbjct: 966  QLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSMQEVCQKCE 1025

Query: 1775 ENIFSFKKKKNIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETCDVQLEGVSH 1954
            E I SF+KKKN+  +FK+                 K  DMPCL+F WQ   D  LE + H
Sbjct: 1026 ETINSFRKKKNVGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGNRDDNLEQILH 1085

Query: 1955 ILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVK 2134
            ILA KICPVLL+TIIKGD R+CTVNIIW SPDTTTW RNP K+RKGELA+DIVLEKAAVK
Sbjct: 1086 ILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLEKAAVK 1145

Query: 2135 QKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKG 2314
            Q+GDAWRIV+D+CLP++HLIDT+RS+PYAI QVQELLG+SCAFDQAVQRL  SVTMV KG
Sbjct: 1146 QRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVTMVAKG 1205

Query: 2315 VLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLFTPRKCFEKAAEK 2488
            VLKEHLILL NSMTCAG LIGF  GGYK LSR+L ++VPFTEATLFTPRKCFEKA+EK
Sbjct: 1206 VLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKASEK 1263


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score = 1243 bits (3215), Expect = 0.0
 Identities = 628/838 (74%), Positives = 698/838 (83%), Gaps = 9/838 (1%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVD KLCLTY+DG STYSLREGS GHTFLRPGQVVHRRIMDGD VFINRPPTTHKHSLQA
Sbjct: 366  LVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQA 425

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQS  AKAEVLELFSVEKQLLSSH+G
Sbjct: 426  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQLLSSHSG 485

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTVLQIL 541
            +LNLQ             + YFL+KAA QQL MF S ++P+P LLK   SG  WT LQIL
Sbjct: 486  NLNLQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPCWTALQIL 545

Query: 542  QTALPVLFDSSGERHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSLQ 718
            QTALP  FD  GERH I +S I++VD+N++ L SLVNEIVTSIF EKGP EVLKFF+SLQ
Sbjct: 546  QTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLKFFDSLQ 605

Query: 719  PLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLR 898
            PLLMENLF+ GFSV LEDFS+P+ V QNIQ++++D+S LLY+LRS YNEL++LQ EN LR
Sbjct: 606  PLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQAENHLR 665

Query: 899  LEKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVL 1078
            L KVPVANFIL  S +GNLIDSKSDSA NKVVQQI FLG QLS+KGKFYSRTLVE MA L
Sbjct: 666  LTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLVEGMAYL 725

Query: 1079 FQTKHP-SGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKN 1255
            F++K+P  G DYPSG++GLI+SCFFHGLDPYEEMVHSIS+RE++VRSSRGL+EPGTLFKN
Sbjct: 726  FKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPGTLFKN 785

Query: 1256 LMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAY 1435
            LMAILRDVVICYDGTVRNVCSNSIIQFEY  K+    Q FFPAGEPVGVLAATAMSNPAY
Sbjct: 786  LMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMSNPAY 845

Query: 1436 KAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQENAAYLVKN 1615
            KAVLDSSPSSN+SWE+MKEILLC+V F ND IDRRVILYLNDC CGR+YC+ENAAYLVKN
Sbjct: 846  KAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKN 905

Query: 1616 QLKKVSLKDAAVEFMIEY-------RSSENDAGLVGHIHRNKELLKKFNITGHEVLDKCQ 1774
            QLKK SLKD AVEFMIEY        SSE   GLVGHIH NK LL+  N++  EV  KC+
Sbjct: 906  QLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSMQEVCQKCE 965

Query: 1775 ENIFSFKKKKNIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETCDVQLEGVSH 1954
            E I SF+KKKN+  +FK+                 K  DMPCL+F WQ   D  LE + H
Sbjct: 966  ETINSFRKKKNVGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGNRDDNLEQILH 1025

Query: 1955 ILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVK 2134
            ILA KICPVLL+TIIKGD R+CTVNIIW SPDTTTW RNP K+RKGELA+DIVLEKAAVK
Sbjct: 1026 ILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLEKAAVK 1085

Query: 2135 QKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKG 2314
            Q+GDAWRIV+D+CLP++HLIDT+RS+PYAI QVQELLG+SCAFDQAVQRL  SVTMV KG
Sbjct: 1086 QRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVTMVAKG 1145

Query: 2315 VLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLFTPRKCFEKAAEK 2488
            VLKEHLILL NSMTCAG LIGF  GGYK LSR+L ++VPFTEATLFTPRKCFEKA+EK
Sbjct: 1146 VLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKASEK 1203


>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
            gi|557522591|gb|ESR33958.1| hypothetical protein
            CICLE_v10004129mg [Citrus clementina]
          Length = 1867

 Score = 1197 bits (3097), Expect = 0.0
 Identities = 609/837 (72%), Positives = 685/837 (81%), Gaps = 7/837 (0%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVDNKLCLTY DGSS+YSLREGS GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA
Sbjct: 368  LVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 427

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            LSVYVHDDHTVKINPLICGPLSADFDGDC+HLFYPQS AAKAEVLELFSVEKQLLSSH G
Sbjct: 428  LSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNG 487

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTVLQIL 541
            +LNLQ             K YFLDKA  QQLAMFA S +P+P L K H SG  WT LQIL
Sbjct: 488  NLNLQLATDALLSLKVMFKKYFLDKAFAQQLAMFALSPLPRPALSKAHCSGPRWTALQIL 547

Query: 542  QTALPVLFDSSGERHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSLQ 718
            Q+ LP  FDS G+R+ I +SE++  DF+++ +PS++NEIVTSIFFEKGPEEVL+FF+SLQ
Sbjct: 548  QSVLPPGFDSCGDRYLIKKSEVLNGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQ 607

Query: 719  PLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLR 898
            PLLMENLFA GFSV LEDFSL  + + NIQ+ +Q +  LLYH  S+ NELV+LQ+EN +R
Sbjct: 608  PLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIR 667

Query: 899  LEKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVL 1078
              K+ VA FILK ST+G LIDSKSDSA +KVVQQ  FLGLQLSD+GKFYS+TLVED+A  
Sbjct: 668  HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 727

Query: 1079 FQTKHPSGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKNL 1258
            F+  +P  ++YP+ KYGLIK CFFHGLDPYEEM HSIS+REV+VRSSRGL+EPGTLFKNL
Sbjct: 728  FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 787

Query: 1259 MAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAYK 1438
            MA+LRDVVICYDGTVRNVCSNSIIQF+YA  +   S S FPAGEPVGVLAATAMSNPAYK
Sbjct: 788  MAVLRDVVICYDGTVRNVCSNSIIQFDYAVNAR-KSHSLFPAGEPVGVLAATAMSNPAYK 846

Query: 1439 AVLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQENAAYLVKNQ 1618
            AVLDSSPSSNNSWE+MKEILLC+V F+NDPIDRRVILYLNDC CGR+YCQE AAY+VKNQ
Sbjct: 847  AVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQ 906

Query: 1619 LKKVSLKDAAVEFMIEYRSSE---NDAGLVGHIHRNKELLKKFNITGHEVLDKCQENIFS 1789
            LK+VSLKDAAVEF+IEY+  E   +D GLVGHIH NK LL+   I+ H++L KCQE + S
Sbjct: 907  LKRVSLKDAAVEFLIEYKKPEIISDDEGLVGHIHLNKILLEDLRISMHDILPKCQETLKS 966

Query: 1790 F---KKKKNIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETCDVQLEGVSHIL 1960
            F   KK K + Q+FK                  K  +MPCLMF  +   D  L+ +S +L
Sbjct: 967  FCKKKKMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVL 1026

Query: 1961 AAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVKQK 2140
            A  I PVLLETIIKGDPRIC+ NIIW SPDTT W RNPSK RKGELA+D+VLEK+ VKQ 
Sbjct: 1027 ANMIYPVLLETIIKGDPRICSANIIWISPDTTAWIRNPSKNRKGELALDVVLEKSVVKQS 1086

Query: 2141 GDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKGVL 2320
            GDAWR V+DSCLP+ HLIDT+RSVPYAI QVQELLGVSCAF+QAVQRL ASVTMV KGVL
Sbjct: 1087 GDAWRTVLDSCLPVFHLIDTRRSVPYAIKQVQELLGVSCAFEQAVQRLSASVTMVAKGVL 1146

Query: 2321 KEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLFTPRKCFEKAAEKR 2491
            KEHLILL NSMTCAG L+GF  GGYK LSRSL V+VPFTEATLF PRKCFEKAAEKR
Sbjct: 1147 KEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKR 1203


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score = 1185 bits (3065), Expect = 0.0
 Identities = 606/836 (72%), Positives = 683/836 (81%), Gaps = 7/836 (0%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVDNKLCLTY DGSS+YSLREGS GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA
Sbjct: 368  LVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 427

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            LSVYVHDDHTVKINPLICGPLSADFDGDC+HLFYPQS AAKAEVLELFSVEKQLLSSH G
Sbjct: 428  LSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNG 487

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTVLQIL 541
            +LNLQ             K YFLDKA  QQLAMFA S +P+P L K   S   WT LQIL
Sbjct: 488  NLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSAR-WTALQIL 546

Query: 542  QTALPVLFDSSGERHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSLQ 718
            Q+ LP  FDS G+R+ I +SE+++ DF+++ +PS++NEIVTSIFFEKGPEEVL+FF+SLQ
Sbjct: 547  QSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQ 606

Query: 719  PLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLR 898
            PLLMENLFA GFSV LEDFSL  + + NIQ+ +Q +  LLYH  S+ NELV+LQ+EN +R
Sbjct: 607  PLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIR 666

Query: 899  LEKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVL 1078
              K+ VA FILK ST+G LIDSKSDSA +KVVQQ  FLGLQLSD+GKFYS+TLVED+A  
Sbjct: 667  HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 726

Query: 1079 FQTKHPSGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKNL 1258
            F+  +P  ++YP+ KYGLIK CFFHGLDPYEEM HSIS+REV+VRSSRGL+EPGTLFKNL
Sbjct: 727  FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 786

Query: 1259 MAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAYK 1438
            MA+LRDVVICYDGTVRNVCSNSIIQF+YA  +   S S FPAGEPVGVLAATAMSNPAYK
Sbjct: 787  MAVLRDVVICYDGTVRNVCSNSIIQFDYAVNAR-KSHSLFPAGEPVGVLAATAMSNPAYK 845

Query: 1439 AVLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQENAAYLVKNQ 1618
            AVLDSSPSSNNSWE+MKEILLC+V F+NDPIDRRVILYLNDC CGR+YCQE AAY+VKNQ
Sbjct: 846  AVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQ 905

Query: 1619 LKKVSLKDAAVEFMIEYRSSE---NDAGLVGHIHRNKELLKKFNITGHEVLDKCQENIFS 1789
            LK+VSLKDAAVEF+IEY+  E   +D GLVGHIH NK LL+   I+ H++L KCQE + S
Sbjct: 906  LKRVSLKDAAVEFLIEYKKPEIISDDEGLVGHIHLNKILLEDLRISMHDILPKCQETLKS 965

Query: 1790 F---KKKKNIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETCDVQLEGVSHIL 1960
            F   KK K + Q+FK                  K  +MPCLMF  +   D  L+ +S +L
Sbjct: 966  FCKKKKMKKVVQFFKNTSLSVSECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVL 1025

Query: 1961 AAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVKQK 2140
            A  I PVLLETIIKGDPRI + NIIW SPDTT W RNPSK RKGELA+D+VLEK+ VKQ 
Sbjct: 1026 ANMIYPVLLETIIKGDPRIYSANIIWISPDTTAWIRNPSKNRKGELALDVVLEKSVVKQS 1085

Query: 2141 GDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKGVL 2320
            GDAWR V+DSCLP+ HLIDT+RSVPYAI QVQELLGVSCAF+QAVQRL ASVTMV KGVL
Sbjct: 1086 GDAWRTVLDSCLPVFHLIDTRRSVPYAIKQVQELLGVSCAFEQAVQRLSASVTMVAKGVL 1145

Query: 2321 KEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLFTPRKCFEKAAEK 2488
            KEHLILL NSMTCAG L+GF  GGYK LSRSL V+VPFTEATLFTPRKCFEKAAEK
Sbjct: 1146 KEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFTPRKCFEKAAEK 1201


>ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
            [Theobroma cacao] gi|508727914|gb|EOY19811.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            3 [Theobroma cacao]
          Length = 1675

 Score = 1179 bits (3051), Expect = 0.0
 Identities = 599/835 (71%), Positives = 678/835 (81%), Gaps = 6/835 (0%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVDNKLCLTY+DGSSTYSLREGS GHTFLRPGQVVHRRIMDGD VFINRPPTTHKHSLQA
Sbjct: 367  LVDNKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQA 426

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            LSVYVHDDHTVKINPLICGPLSADFDGDC+HLFYPQS AAKAEV ELFSVEKQLLSSH G
Sbjct: 427  LSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVFELFSVEKQLLSSHNG 486

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTVLQIL 541
            +LNLQ             K     KA  QQL+MF SS +PQP  LKG+S G  WT LQIL
Sbjct: 487  NLNLQLATDSLLSLRVMLKTLLFKKADAQQLSMFLSSALPQPAFLKGNSFGPCWTALQIL 546

Query: 542  QTALPVLFDSSGERHRIVRSEIMEVDFNKEL-PSLVNEIVTSIFFEKGPEEVLKFFNSLQ 718
            QTA P   D SG+R+ I +S+I+ VDF+++L  S++NE+VTSIFFEKGP+EVL FF+SLQ
Sbjct: 547  QTAFPACLDCSGDRYLISKSDILTVDFSRDLMQSVINEVVTSIFFEKGPKEVLNFFDSLQ 606

Query: 719  PLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLR 898
            PLLMEN+FA GFSV LEDFS+   VIQNIQ+ +QD+SPLLY LRS+YNELV LQ+EN +R
Sbjct: 607  PLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLLYQLRSTYNELVGLQMENHIR 666

Query: 899  LEKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVL 1078
            + K PVANFIL  S +G+LIDSKSDS  NKVVQQI FLGLQLS+KGKFYS+TLVED+A  
Sbjct: 667  VAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKTLVEDVAYQ 726

Query: 1079 FQTKHPS-GVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKN 1255
            FQ+ +PS GVDYPS ++GLIKSCFFHGLDPYE MVHSIS+REV+VRSSRGL+EPGTLFKN
Sbjct: 727  FQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLSEPGTLFKN 786

Query: 1256 LMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAY 1435
            LMAILRDVVICYDGTVRN+ SNSIIQF+Y   +    Q  FPAGEPVGVLAATAMSNPAY
Sbjct: 787  LMAILRDVVICYDGTVRNISSNSIIQFQYGLNARTKPQ--FPAGEPVGVLAATAMSNPAY 844

Query: 1436 KAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQENAAYLVKN 1615
            KAVLDS+PSSN+SWE+MKEILLCKV   ND +DRRVILYL DC CGR+YCQENAAYLVKN
Sbjct: 845  KAVLDSTPSSNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYCQENAAYLVKN 904

Query: 1616 QLKKVSLKDAAVEFMIEYRS----SENDAGLVGHIHRNKELLKKFNITGHEVLDKCQENI 1783
             L+KV LKD AVE + EY+     SE++AGLVGHI  NK +LK+ NI+  EV  KCQE I
Sbjct: 905  HLRKVKLKDTAVELIFEYKQQQTVSESEAGLVGHILLNKAVLKELNISMQEVHMKCQETI 964

Query: 1784 FSFKKKKNIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETCDVQLEGVSHILA 1963
             SF+KKK  A  FKR                 KW DM CLMF  + T D  L+     L 
Sbjct: 965  ISFRKKKKTADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCRNTKDDHLDCTLQDLV 1024

Query: 1964 AKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVKQKG 2143
              I PVLLET+IKGDPRIC+ NIIW SPDTTTW R+PSKT+KGELA+D+VLEK+AVKQ G
Sbjct: 1025 DIIYPVLLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELALDVVLEKSAVKQNG 1084

Query: 2144 DAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKGVLK 2323
            DAWR V+D CLP+I+LIDT+RS+PYAI QVQELLG+SCAF+QAVQRL  SV+MV +GVLK
Sbjct: 1085 DAWRTVIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQRLSTSVSMVARGVLK 1144

Query: 2324 EHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLFTPRKCFEKAAEK 2488
            EHLILL NSMTCAG LIGF  GGYK LSRSL ++VPF+EATLFTPRKCFE+AAEK
Sbjct: 1145 EHLILLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPRKCFERAAEK 1199


>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
            [Theobroma cacao] gi|590569189|ref|XP_007011000.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao]
          Length = 1788

 Score = 1179 bits (3051), Expect = 0.0
 Identities = 599/835 (71%), Positives = 678/835 (81%), Gaps = 6/835 (0%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVDNKLCLTY+DGSSTYSLREGS GHTFLRPGQVVHRRIMDGD VFINRPPTTHKHSLQA
Sbjct: 367  LVDNKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQA 426

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            LSVYVHDDHTVKINPLICGPLSADFDGDC+HLFYPQS AAKAEV ELFSVEKQLLSSH G
Sbjct: 427  LSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVFELFSVEKQLLSSHNG 486

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTVLQIL 541
            +LNLQ             K     KA  QQL+MF SS +PQP  LKG+S G  WT LQIL
Sbjct: 487  NLNLQLATDSLLSLRVMLKTLLFKKADAQQLSMFLSSALPQPAFLKGNSFGPCWTALQIL 546

Query: 542  QTALPVLFDSSGERHRIVRSEIMEVDFNKEL-PSLVNEIVTSIFFEKGPEEVLKFFNSLQ 718
            QTA P   D SG+R+ I +S+I+ VDF+++L  S++NE+VTSIFFEKGP+EVL FF+SLQ
Sbjct: 547  QTAFPACLDCSGDRYLISKSDILTVDFSRDLMQSVINEVVTSIFFEKGPKEVLNFFDSLQ 606

Query: 719  PLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLR 898
            PLLMEN+FA GFSV LEDFS+   VIQNIQ+ +QD+SPLLY LRS+YNELV LQ+EN +R
Sbjct: 607  PLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLLYQLRSTYNELVGLQMENHIR 666

Query: 899  LEKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVL 1078
            + K PVANFIL  S +G+LIDSKSDS  NKVVQQI FLGLQLS+KGKFYS+TLVED+A  
Sbjct: 667  VAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKTLVEDVAYQ 726

Query: 1079 FQTKHPS-GVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKN 1255
            FQ+ +PS GVDYPS ++GLIKSCFFHGLDPYE MVHSIS+REV+VRSSRGL+EPGTLFKN
Sbjct: 727  FQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLSEPGTLFKN 786

Query: 1256 LMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAY 1435
            LMAILRDVVICYDGTVRN+ SNSIIQF+Y   +    Q  FPAGEPVGVLAATAMSNPAY
Sbjct: 787  LMAILRDVVICYDGTVRNISSNSIIQFQYGLNARTKPQ--FPAGEPVGVLAATAMSNPAY 844

Query: 1436 KAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQENAAYLVKN 1615
            KAVLDS+PSSN+SWE+MKEILLCKV   ND +DRRVILYL DC CGR+YCQENAAYLVKN
Sbjct: 845  KAVLDSTPSSNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYCQENAAYLVKN 904

Query: 1616 QLKKVSLKDAAVEFMIEYRS----SENDAGLVGHIHRNKELLKKFNITGHEVLDKCQENI 1783
             L+KV LKD AVE + EY+     SE++AGLVGHI  NK +LK+ NI+  EV  KCQE I
Sbjct: 905  HLRKVKLKDTAVELIFEYKQQQTVSESEAGLVGHILLNKAVLKELNISMQEVHMKCQETI 964

Query: 1784 FSFKKKKNIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETCDVQLEGVSHILA 1963
             SF+KKK  A  FKR                 KW DM CLMF  + T D  L+     L 
Sbjct: 965  ISFRKKKKTADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCRNTKDDHLDCTLQDLV 1024

Query: 1964 AKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVKQKG 2143
              I PVLLET+IKGDPRIC+ NIIW SPDTTTW R+PSKT+KGELA+D+VLEK+AVKQ G
Sbjct: 1025 DIIYPVLLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELALDVVLEKSAVKQNG 1084

Query: 2144 DAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKGVLK 2323
            DAWR V+D CLP+I+LIDT+RS+PYAI QVQELLG+SCAF+QAVQRL  SV+MV +GVLK
Sbjct: 1085 DAWRTVIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQRLSTSVSMVARGVLK 1144

Query: 2324 EHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLFTPRKCFEKAAEK 2488
            EHLILL NSMTCAG LIGF  GGYK LSRSL ++VPF+EATLFTPRKCFE+AAEK
Sbjct: 1145 EHLILLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPRKCFERAAEK 1199


>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
            gi|462415343|gb|EMJ20080.1| hypothetical protein
            PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score = 1178 bits (3047), Expect = 0.0
 Identities = 590/843 (69%), Positives = 683/843 (81%), Gaps = 14/843 (1%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVD+KLCLTYKDGSSTYSLREGS GHTFLRPGQVVHRRIMDGD VF+NRPPTTHKHSLQA
Sbjct: 369  LVDSKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDLVFVNRPPTTHKHSLQA 428

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            L VYVHDDH VKINPLICGPLSADFDGDC+HLFYPQS AAKAEVLELFSVEKQLLSSH+G
Sbjct: 429  LQVYVHDDHVVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHSG 488

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTVLQIL 541
              NLQ             K YFLDKAA QQLAMFASS++P+P LLK +S+   WT  QIL
Sbjct: 489  KPNLQLAADALLSLKMMFKKYFLDKAAAQQLAMFASSSLPRPALLKANSAHSYWTAFQIL 548

Query: 542  QTALPVLFDSSGERHRIVRSEIMEVDFN-KELPSLVNEIVTSIFFEKGPEEVLKFFNSLQ 718
            QTALP  FD SG+ + + +SEI+ +DF+   + +++N+I TS+FFEKG E+VLKFF+SLQ
Sbjct: 549  QTALPAHFDCSGDNYLVNKSEILNIDFSTSSVAAVMNDIATSVFFEKGGEDVLKFFDSLQ 608

Query: 719  PLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLR 898
            PLLMENLF+ GFSVGLEDF +  + IQ+IQ+++QD S LLYHLRS+YNE VE QL+NR+R
Sbjct: 609  PLLMENLFSEGFSVGLEDFYMSRTSIQDIQKNIQDSSDLLYHLRSTYNEFVEFQLQNRIR 668

Query: 899  LEKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVL 1078
              KVPV++FIL+ S +G+LIDSKSDSA NK+VQQI FLGLQLSDKG+FYS+TLVED+A L
Sbjct: 669  SVKVPVSHFILESSALGDLIDSKSDSAINKIVQQIGFLGLQLSDKGRFYSKTLVEDVASL 728

Query: 1079 FQTKHPSGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKNL 1258
              +K+PS +DYPS +YGL++SCFFHGLDPYE +VHSI++REV+VRSSRGL+EPGTLFKNL
Sbjct: 729  CHSKYPSDIDYPSAEYGLVQSCFFHGLDPYEAIVHSIATREVIVRSSRGLSEPGTLFKNL 788

Query: 1259 MAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAYK 1438
            MAILRDVVICYDGTVRNVCSNSIIQFEY    G   Q  FPAGEPVGVLAATAMSNPAYK
Sbjct: 789  MAILRDVVICYDGTVRNVCSNSIIQFEYGVNIGSRPQHLFPAGEPVGVLAATAMSNPAYK 848

Query: 1439 AVLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQENAAYLVKNQ 1618
            AVLDS+PSSN+SWE+MKEILLCKV F N+ IDRRVILYLN+C CGR+YC+E AA LVKNQ
Sbjct: 849  AVLDSTPSSNSSWELMKEILLCKVNFKNELIDRRVILYLNNCGCGRKYCRERAACLVKNQ 908

Query: 1619 LKKVSLKDAAVEFMIEYR-------SSENDAGLVGHIHRNKELLKKFNITGHEVLDKCQE 1777
            LKKVSLKD AVEFMIEY        S  NDAGLVGHIH N+++L++ NI  H++L KCQE
Sbjct: 909  LKKVSLKDTAVEFMIEYNNQLSGLGSLINDAGLVGHIHLNEDMLRELNIGVHDILQKCQE 968

Query: 1778 NIFSFKKKK------NIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETCDVQL 1939
             I SF++KK      NI  +FK                  K  D PCLMF  Q T D++ 
Sbjct: 969  TINSFRRKKVGKKKFNIGYHFKNTVLFASEHCSFHHSCAEKRSDSPCLMFFLQATDDLET 1028

Query: 1940 EGVSHILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLE 2119
                   A  ICPVLLETIIKGDPRI + NIIW  PDTTTW R+P+K++KGE A+DIVLE
Sbjct: 1029 TTTLQYYADLICPVLLETIIKGDPRIGSANIIWIDPDTTTWIRSPNKSQKGEWALDIVLE 1088

Query: 2120 KAAVKQKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVT 2299
            K+ +KQ GDAWR V+DSCLP++HLIDT+RS+PYAI Q+QELLGVSCAFDQAVQRL  +VT
Sbjct: 1089 KSVIKQSGDAWRTVLDSCLPVLHLIDTRRSIPYAIKQIQELLGVSCAFDQAVQRLSTAVT 1148

Query: 2300 MVTKGVLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLFTPRKCFEKA 2479
            MV KGVLKEHLILL NSMTCAG  +GF   GYK LSR+L ++VPFTEATLFTPRKCFE+A
Sbjct: 1149 MVAKGVLKEHLILLANSMTCAGNFVGFNSSGYKALSRALNIQVPFTEATLFTPRKCFERA 1208

Query: 2480 AEK 2488
            AEK
Sbjct: 1209 AEK 1211


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score = 1144 bits (2960), Expect = 0.0
 Identities = 590/837 (70%), Positives = 667/837 (79%), Gaps = 8/837 (0%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVDNKLCLTYKDGSSTYSLREGS GHTFLRPGQVVHRRIMDGD VFINRPPTTHKHSLQA
Sbjct: 372  LVDNKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQA 431

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            LSVYVHDDH VKINPLICGPLSADFDGDCVHLFYPQS AAKAEVLELFSVEKQLLSSH+G
Sbjct: 432  LSVYVHDDHAVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSG 491

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTVLQIL 541
            +LNLQ             K  FL K+A QQLAMF S  +PQP LLK +     WT  QIL
Sbjct: 492  NLNLQLTTDSLLSLKMMFKACFLGKSAAQQLAMFISPYLPQPALLKVNCFFPHWTAHQIL 551

Query: 542  QTALPVLFDSSGERHRIVRSEIMEVDFNKEL-PSLVNEIVTSIFFEKGPEEVLKFFNSLQ 718
            Q ALP  F+ SGER  I+ S  ++VDFN+++  S++NEI+ S+FFEKG   VLKFFNSLQ
Sbjct: 552  QMALPACFNCSGERFLIINSNFLKVDFNRDVVASVINEILISMFFEKGSGAVLKFFNSLQ 611

Query: 719  PLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLR 898
            P+LMENLF+ GFSV LEDFS+  +V Q I E  + +SPLL +LRS++NELVELQ+EN +R
Sbjct: 612  PMLMENLFSEGFSVSLEDFSISRAVKQRIPESFKAISPLLCNLRSTFNELVELQVENHIR 671

Query: 899  LEKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVL 1078
              K PV  FIL  S +G LIDSKSD+A  KVVQQI FLGLQ+SD+GK YS+TLVED+A  
Sbjct: 672  DVKQPVREFILTSSALGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKLYSKTLVEDLASH 731

Query: 1079 FQTKHPSGV-DYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKN 1255
            F +K+P+ + DYPS +YGLI++ FFHGLD YEEM HSIS+REV+VRSSRGL+EPGTLFKN
Sbjct: 732  FLSKYPANLFDYPSAQYGLIQNSFFHGLDAYEEMAHSISTREVIVRSSRGLSEPGTLFKN 791

Query: 1256 LMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAY 1435
            LMAILRDVVICYDGTVRNV SNSIIQFEY  K G +SQS FPAGEPVGVLAATAMSNPAY
Sbjct: 792  LMAILRDVVICYDGTVRNVSSNSIIQFEYGVKVGTESQSLFPAGEPVGVLAATAMSNPAY 851

Query: 1436 KAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQENAAYLVKN 1615
            KAVLDS+PSSN SW+MMKEILLCKV F ND  DRRVILYLNDC CGR YCQE AAYLVKN
Sbjct: 852  KAVLDSTPSSNCSWDMMKEILLCKVGFKNDLADRRVILYLNDCGCGRNYCQERAAYLVKN 911

Query: 1616 QLKKVSLKDAAVEFMIEYRSSE------NDAGLVGHIHRNKELLKKFNITGHEVLDKCQE 1777
             L+KVSLKD A  FMIEY+S +      +DAGLVGH+H +K  L+  NIT   +L+KCQE
Sbjct: 912  HLEKVSLKDIAKCFMIEYKSQQIPESFGSDAGLVGHVHLDKRKLQDLNITAQVILEKCQE 971

Query: 1778 NIFSFKKKKNIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETCDVQLEGVSHI 1957
             + +F+KKK +   FK+                    + PCLMF WQ   DV LE  S+I
Sbjct: 972  TVNTFRKKKKVGNLFKKTILLVSESCSFQQCID----ESPCLMFFWQGADDVHLERTSNI 1027

Query: 1958 LAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVKQ 2137
            LA  ICPVLLETIIKGD RI   NIIW +P+T TW RNPS+T+KGELA+DIVLEK+ VK+
Sbjct: 1028 LADMICPVLLETIIKGDHRISCANIIWATPETNTWIRNPSRTQKGELALDIVLEKSVVKK 1087

Query: 2138 KGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKGV 2317
             GDAWRIV+DSCLP++HLI+T RS+PYAI QVQELLGVSCAFD AVQRL  SVTMV KGV
Sbjct: 1088 SGDAWRIVLDSCLPVLHLINTTRSIPYAIKQVQELLGVSCAFDTAVQRLSKSVTMVAKGV 1147

Query: 2318 LKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLFTPRKCFEKAAEK 2488
            LKEHLILLGNSMTCAG+LIGF  GGYK LSRSL ++VPFTEATLFTPRKCFEKAAEK
Sbjct: 1148 LKEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTPRKCFEKAAEK 1204


>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1991

 Score = 1143 bits (2957), Expect = 0.0
 Identities = 572/842 (67%), Positives = 680/842 (80%), Gaps = 13/842 (1%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVD+KLCLTY DGSSTYSLREGS GHTFL+PGQVVHRRIMDGD VF+NRPPTTHKHSLQA
Sbjct: 365  LVDSKLCLTYSDGSSTYSLREGSKGHTFLKPGQVVHRRIMDGDLVFVNRPPTTHKHSLQA 424

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            L VYVH+D  VKINPLICGPLSADFDGDC+HLFYPQS AAKAEV+ELFSVEKQLLSSH+G
Sbjct: 425  LQVYVHEDKVVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVMELFSVEKQLLSSHSG 484

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTVLQIL 541
              NLQ             K YF +KAA+QQLAMF SS++PQP LLK +S+   WT LQIL
Sbjct: 485  KPNLQLATDSLLSLKLMFKKYFFNKAAMQQLAMFVSSSLPQPALLKANSTVPCWTALQIL 544

Query: 542  QTALPVLFDSSGERHRIVRSEIMEVDFNKEL-PSLVNEIVTSIFFEKGPEEVLKFFNSLQ 718
            QTALP  F SSG+RH +  SE++ +D +  L PSL+N+I TSIFFEK  E+VL FFNS+Q
Sbjct: 545  QTALPAQFQSSGDRHLVKDSEVLLLDCSTSLVPSLINDIGTSIFFEKSAEDVLSFFNSMQ 604

Query: 719  PLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLR 898
            PLLMENLF+ GFSVGLEDF+LP + IQ+IQ+ L+++SPLL+H+R+ YNELVE+QLEN +R
Sbjct: 605  PLLMENLFSEGFSVGLEDFALPRASIQDIQKGLKEISPLLFHMRTVYNELVEMQLENHIR 664

Query: 899  LEKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVL 1078
              K PV+NFIL  S +G+LIDSKSDSA NKVVQQ+ FLG QL D+GK YS+TLVED++ L
Sbjct: 665  KVKEPVSNFILNSSALGDLIDSKSDSAMNKVVQQVGFLGRQLYDQGKLYSKTLVEDVSSL 724

Query: 1079 FQTKHPSG-VDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKN 1255
            +Q K+PS  VDYPS ++GL+   F HGLDP E M+HSI++REV+VRSSRGL+EPGTLFKN
Sbjct: 725  YQNKYPSDIVDYPSAEFGLVHRGFVHGLDPVEGMIHSIATREVIVRSSRGLSEPGTLFKN 784

Query: 1256 LMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAY 1435
            LMA LRDVVICYDGTVRNVCSNSIIQFEY  KSG   ++ FPAGEPVGVLAATAMSNPAY
Sbjct: 785  LMATLRDVVICYDGTVRNVCSNSIIQFEYGVKSGSGPENLFPAGEPVGVLAATAMSNPAY 844

Query: 1436 KAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQENAAYLVKN 1615
            KAVLDS+PSSN+SW++MKEILLCKV F N+ IDRRV+LYLNDC CGR+YC+E+AAYLVKN
Sbjct: 845  KAVLDSTPSSNSSWDLMKEILLCKVNFKNELIDRRVVLYLNDCGCGRKYCREHAAYLVKN 904

Query: 1616 QLKKVSLKDAAVEFMIEYR------SSENDAGLVGHIHRNKELLKKFNITGHEVLDKCQE 1777
            +LKKVSLKD AVEFMIEY+      S E D+GLVGH+H N+ LL++ N+   E+L KC+E
Sbjct: 905  RLKKVSLKDTAVEFMIEYQKERAAGSMEIDSGLVGHVHLNEMLLRELNLGMSEILQKCEE 964

Query: 1778 NIFSFKKKK-----NIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETCDVQLE 1942
             I SF++KK     NI + FKR                      PCLMF +Q+  + +LE
Sbjct: 965  TINSFRRKKVGKKMNIGEIFKRTILSYSECCSFHQSSADNRSGSPCLMFFYQDFNNSELE 1024

Query: 1943 GVSHILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEK 2122
             +S +LA  ICPVLL+T+IKGDPRI + NIIW + ++TTW R+P+K+ KGELA+D+VLEK
Sbjct: 1025 AISQMLADFICPVLLKTVIKGDPRISSANIIWINSESTTWIRSPNKSLKGELALDVVLEK 1084

Query: 2123 AAVKQKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTM 2302
            + VKQ GDAWRI +D CLP++HLIDT+RS+PYAI QVQELLGVSCAFDQAVQRL  +V M
Sbjct: 1085 SVVKQSGDAWRIALDCCLPVLHLIDTRRSIPYAIKQVQELLGVSCAFDQAVQRLAKAVAM 1144

Query: 2303 VTKGVLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLFTPRKCFEKAA 2482
            V KGVLKEHLILL NSMTCAG  +GF  GGYK LSR+L ++VPFTEATLFTP+KCFE+AA
Sbjct: 1145 VAKGVLKEHLILLANSMTCAGNFVGFNPGGYKALSRALNIQVPFTEATLFTPKKCFERAA 1204

Query: 2483 EK 2488
            EK
Sbjct: 1205 EK 1206


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score = 1140 bits (2948), Expect = 0.0
 Identities = 572/836 (68%), Positives = 675/836 (80%), Gaps = 7/836 (0%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVD KLCLTY+DGSS YSLREGSMGHT+L+PGQ+VHRRIMDGD VFINRPPTTHKHSLQA
Sbjct: 366  LVDKKLCLTYRDGSSAYSLREGSMGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQA 425

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            L VY+HDDH VKINPLICGPLSADFDGDC+HLFYPQS AAKAEVL LFSVEKQLLSSH+G
Sbjct: 426  LRVYLHDDHVVKINPLICGPLSADFDGDCIHLFYPQSIAAKAEVLGLFSVEKQLLSSHSG 485

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTVLQIL 541
            +LNLQ             + YFL KAA QQLAMF SS +P P LL   S    WT LQIL
Sbjct: 486  NLNLQLANDSLLSLKMMFRKYFLGKAAAQQLAMFVSSYLPPPALLGVRSGSLHWTALQIL 545

Query: 542  QTALPVLFDSSGERHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSLQ 718
            QT LP  FD  G+ + I  S  ++ DF+++ +PSL+NEI+TSIFF+KGPEEVLKFF+SLQ
Sbjct: 546  QTVLPASFDCHGDSYLIKNSNFLKFDFDRDAMPSLINEILTSIFFQKGPEEVLKFFDSLQ 605

Query: 719  PLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLR 898
            PLLME++F+ GFSVGL+D+S+P + +Q +Q+++Q +SPLLY LRS++NELVELQLEN LR
Sbjct: 606  PLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQLENHLR 665

Query: 899  LEKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVL 1078
              KVP  NFILKLS++G L DSKS+SA NKVVQQI FLGLQLSDKG+FYS++L+ED+A L
Sbjct: 666  SVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVASL 725

Query: 1079 FQTKHPSG-VDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKN 1255
            F  ++ S  +DYPS ++GL+K CFFHGLDPYEEMVHSIS+REVMVRSSRGLTEPGTLFKN
Sbjct: 726  FHNRYSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPGTLFKN 785

Query: 1256 LMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSG-IDSQSFFPAGEPVGVLAATAMSNPA 1432
            LMAILRDVVICYDGTVRNVCSNSIIQ EY  K+G +   S FP GEPVGVLAATAMS PA
Sbjct: 786  LMAILRDVVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPGEPVGVLAATAMSTPA 845

Query: 1433 YKAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQENAAYLVK 1612
            YKAVLDS+PSSN+SW+MMKEILLCKV F N+PIDRRVILYLN+C+CGR+YC ENAAY+VK
Sbjct: 846  YKAVLDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKYCNENAAYVVK 905

Query: 1613 NQLKKVSLKDAAVEFMIEYRSSENDA----GLVGHIHRNKELLKKFNITGHEVLDKCQEN 1780
            + LKKV+LKDAA++FMIEY      +    GLVGH+H N+ LLK+ NI   EVL +CQE 
Sbjct: 906  SHLKKVTLKDAAMDFMIEYNRQPTPSGLGPGLVGHVHLNRMLLKELNIDMTEVLRRCQET 965

Query: 1781 IFSFKKKKNIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETCDVQLEGVSHIL 1960
            + SFKKKK    +  R                 +  DMPCL+F W +T DV LE  +HIL
Sbjct: 966  MSSFKKKKKKIAHALR--FSISEHCAFHQWNGEESIDMPCLIF-WHQTRDVHLERTAHIL 1022

Query: 1961 AAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVKQK 2140
            A  + P+L ETIIKGDPRI + ++IW SPD+T+W +NPS+ + GELA+D+ LEK+AVKQ 
Sbjct: 1023 ADIVFPLLSETIIKGDPRIKSASVIWISPDSTSWQKNPSRWQDGELALDVCLEKSAVKQN 1082

Query: 2141 GDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKGVL 2320
            GDAWR V+D CLP++HLIDT+RSVPYAI QVQELLG+SCAFDQ +QRL  SV+MV+KGVL
Sbjct: 1083 GDAWRNVLDCCLPVLHLIDTRRSVPYAIKQVQELLGISCAFDQMIQRLSKSVSMVSKGVL 1142

Query: 2321 KEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLFTPRKCFEKAAEK 2488
             +HLILL NSMTC G +IGF  GGYK LSR+L ++VPFTEATLFTPRKCFEKAAEK
Sbjct: 1143 GDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATLFTPRKCFEKAAEK 1198


>ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1 [Solanum lycopersicum]
          Length = 1632

 Score = 1125 bits (2911), Expect = 0.0
 Identities = 567/837 (67%), Positives = 659/837 (78%), Gaps = 8/837 (0%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVD KLCLTYKDGSSTYSLREGS GHTFLRPGQ+VHRRIMDGDTVFINRPPTTHKHSLQA
Sbjct: 367  LVDEKLCLTYKDGSSTYSLREGSKGHTFLRPGQIVHRRIMDGDTVFINRPPTTHKHSLQA 426

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            LSVYVHDDHTVKINPL+CGPLSADFDGDC+HLFYPQS +AKAEVLELF+V KQLLSSHTG
Sbjct: 427  LSVYVHDDHTVKINPLMCGPLSADFDGDCIHLFYPQSLSAKAEVLELFAVGKQLLSSHTG 486

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTVLQIL 541
            + NLQ               YF DKAA QQLAMF    +P   ++    SG +WT LQIL
Sbjct: 487  NFNLQLATDSLLSLKLMFSHYFFDKAAAQQLAMFLPMALPDSAVVDVRKSGAMWTTLQIL 546

Query: 542  QTALPVLFDSSGERHRIVRSEIMEVDFNKEL-PSLVNEIVTSIFFEKGPEEVLKFFNSLQ 718
              ALP  FDS GE H I +S+ + +D++++L  S++N+++TSI+F KGP +VLKFFNSLQ
Sbjct: 547  GAALPDGFDSCGETHTIGKSQFLGIDYHRDLISSILNDVITSIYFMKGPNDVLKFFNSLQ 606

Query: 719  PLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLR 898
            PLLMENL   GFS+ L DF +  +V   IQE +Q MS LL+HLRSSYNE VE+QLE+ LR
Sbjct: 607  PLLMENLCTEGFSISLRDFYMTKAVRDGIQERIQCMSKLLHHLRSSYNESVEVQLEHHLR 666

Query: 899  LEKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVL 1078
             EK+PV +F+LK S MG LIDSKS+SA NKVVQQI FLGLQ+SD+GKFY++TLV DMA L
Sbjct: 667  NEKLPVIDFVLKSSGMGVLIDSKSESAFNKVVQQIGFLGLQISDRGKFYTKTLVHDMAQL 726

Query: 1079 FQTKHPSGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKNL 1258
            FQ K+PS    PS ++GL++SC F+GLDPY+ M+HSISSREV+VRS+RGLTEPGTLFKNL
Sbjct: 727  FQKKYPSVGTNPSEEFGLVRSCLFYGLDPYQGMIHSISSREVIVRSTRGLTEPGTLFKNL 786

Query: 1259 MAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAYK 1438
            MAILRDVVICYDGTVRNV SNSIIQFEY    G +  S F AG+PVGVLAATAMSNPAYK
Sbjct: 787  MAILRDVVICYDGTVRNVSSNSIIQFEYGSSGGSNLPSEFCAGDPVGVLAATAMSNPAYK 846

Query: 1439 AVLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQENAAYLVKNQ 1618
            AVLDSSPSSN+SWEMMKEILLC V F ND  DRRVILYLNDC C R YC+E AAY+VKN 
Sbjct: 847  AVLDSSPSSNSSWEMMKEILLCGVSFKNDVSDRRVILYLNDCGCRRGYCREKAAYVVKNH 906

Query: 1619 LKKVSLKDAAVEFMIE-------YRSSENDAGLVGHIHRNKELLKKFNITGHEVLDKCQE 1777
            L KV LKDAA EF+IE       Y +SE   GL+GHI  N+  L+   I+  EV ++CQE
Sbjct: 907  LSKVCLKDAADEFLIEYAGRQAGYENSETGTGLIGHIRLNQGQLENLGISVLEVHERCQE 966

Query: 1778 NIFSFKKKKNIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETCDVQLEGVSHI 1957
            NI SF+KKK I   FKR                 K  + PCL FSW +  D  LE VSHI
Sbjct: 967  NISSFQKKKKIGNLFKRIVLSVSEFCSFCHNSGSKCLNAPCLRFSWPDASDDHLERVSHI 1026

Query: 1958 LAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVKQ 2137
            LA  ICP+LL+T+IKGDPR+ + NI W SPDT +W R+PSK+++GELA+DIVLEK AVKQ
Sbjct: 1027 LADMICPILLDTVIKGDPRVSSANIAWISPDTMSWIRSPSKSQRGELALDIVLEKEAVKQ 1086

Query: 2138 KGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKGV 2317
            +GDAWRI++DSCLP+IHLIDT RS+PYAI QVQEL+G+SCAF+QAV+RL  SVTMVTKGV
Sbjct: 1087 RGDAWRILMDSCLPVIHLIDTTRSIPYAIKQVQELIGISCAFEQAVKRLSTSVTMVTKGV 1146

Query: 2318 LKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLFTPRKCFEKAAEK 2488
            LK+HL+LL NSMTCAG L+GF  GG K LSRSL V++PFTEATLFTPRKCFE+AAEK
Sbjct: 1147 LKDHLVLLANSMTCAGNLVGFNAGGIKALSRSLNVQIPFTEATLFTPRKCFERAAEK 1203


>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
          Length = 2054

 Score = 1120 bits (2898), Expect = 0.0
 Identities = 572/835 (68%), Positives = 670/835 (80%), Gaps = 6/835 (0%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVDNKLCLTYKDGSSTYSLREGS GHTFL+ GQVVHRRIMDGD VFINRPPTTHKHSLQA
Sbjct: 372  LVDNKLCLTYKDGSSTYSLREGSKGHTFLKLGQVVHRRIMDGDIVFINRPPTTHKHSLQA 431

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            L VYVH+D+TVKINPLICGPLSADFDGDCVHLFYPQS AAKAEVLELFS+EKQ+LSSH+G
Sbjct: 432  LRVYVHEDNTVKINPLICGPLSADFDGDCVHLFYPQSPAAKAEVLELFSLEKQILSSHSG 491

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTVLQIL 541
             + LQ             K YF+DK A QQL MFASS++PQP     HS    WT LQ+L
Sbjct: 492  GMILQLACDSLLSLKIMFKTYFMDKIAAQQLVMFASSSLPQPAFWLTHSGDPFWTALQVL 551

Query: 542  QTALPVLFDSSGERHRIVRSEIMEVDFNKELPSLVNEIVTSIFFEKGPEEVLKFFNSLQP 721
            QTALP   D  G+R  I  S+I+ +DFN+++ S++N+I  SI  EKG EEVLKFFN+LQP
Sbjct: 552  QTALPTSLDCYGDRFLIKGSDILVLDFNRDV-SVINDIGASICSEKGSEEVLKFFNALQP 610

Query: 722  LLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLRL 901
            LLMEN+FA GFSVGLEDFS+   VI+NI + +Q +SPLLYHLRS+YNELVELQLEN++R 
Sbjct: 611  LLMENIFAQGFSVGLEDFSISQEVIKNITKDIQLISPLLYHLRSTYNELVELQLENQIRF 670

Query: 902  EKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVLF 1081
             K PV NFILK S+MGNLID KSDSA NKVVQQI FLGLQ+SD+GKFYS+TLVED++ L+
Sbjct: 671  AKAPVTNFILKSSSMGNLIDPKSDSAINKVVQQIGFLGLQISDRGKFYSKTLVEDVSCLY 730

Query: 1082 QTKHPSGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKNLM 1261
              K+P  VDYPS ++GLI+SCFFHGLDPYEE+VHSIS+REV+VRSSRGLTEPGTLFKNLM
Sbjct: 731  TRKYPENVDYPSAEHGLIRSCFFHGLDPYEEIVHSISTREVIVRSSRGLTEPGTLFKNLM 790

Query: 1262 AILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAYKA 1441
            AILRDVVICYDGTVRNVCSNSIIQFEY + S   +++ +PAGEPVGVLAATAMSNPAYKA
Sbjct: 791  AILRDVVICYDGTVRNVCSNSIIQFEYGRGS---ARNLYPAGEPVGVLAATAMSNPAYKA 847

Query: 1442 VLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQENAAYLVKNQL 1621
            VLDSSPSSN+SWE+MKEILLCK  F N+ IDRRVILYLN C CGR+YC+E A YLV+NQL
Sbjct: 848  VLDSSPSSNSSWELMKEILLCKAIFRNELIDRRVILYLNHCGCGRKYCREQATYLVQNQL 907

Query: 1622 KKVSLKDAAVEFMIEYRSSEN------DAGLVGHIHRNKELLKKFNITGHEVLDKCQENI 1783
            KKVSLKD AVEFMIEY++  +      +AGLVGHIH N+ LLK+ +I  +E+L KC+E I
Sbjct: 908  KKVSLKDTAVEFMIEYKNQSSFSAVDMNAGLVGHIHLNEVLLKEMDIGMNEILQKCEEAI 967

Query: 1784 FSFKKKKNIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETCDVQLEGVSHILA 1963
             S +KKK + ++ K+                    + PCL+ S +E  +  LE  S ILA
Sbjct: 968  NSVRKKK-LGKHLKKAVLSVSECCTFHKSGLDGTSEFPCLLISIRENMNDTLEESSKILA 1026

Query: 1964 AKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVKQKG 2143
              ICP LLETIIKGD RI +  I W S DTT+  R+P  +  GELAVD+VL+K+A+K+ G
Sbjct: 1027 DSICPFLLETIIKGDSRISSAKITWLSSDTTS-IRSPQNSDMGELAVDVVLDKSAIKRSG 1085

Query: 2144 DAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKGVLK 2323
            DAWRIV+DSCLP++HLIDT+RS+PY I Q+QELLG+SCAFDQAVQRL  SV+MV+KGVLK
Sbjct: 1086 DAWRIVIDSCLPVLHLIDTRRSIPYGIKQIQELLGISCAFDQAVQRLSTSVSMVSKGVLK 1145

Query: 2324 EHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLFTPRKCFEKAAEK 2488
            EHLILL NSMT AG LIGF  GGYK L+RSL V+VPFTEATL TP++CFE+AAEK
Sbjct: 1146 EHLILLANSMTYAGNLIGFNSGGYKALTRSLNVQVPFTEATLITPKRCFERAAEK 1200


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score = 1120 bits (2896), Expect = 0.0
 Identities = 572/866 (66%), Positives = 675/866 (77%), Gaps = 37/866 (4%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVD KLCLTY+DGSS YSLREGSMGHT+L+PGQ+VHRRIMDGD VFINRPPTTHKHSLQA
Sbjct: 396  LVDKKLCLTYRDGSSAYSLREGSMGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQA 455

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            L VY+HDDH VKINPLICGPLSADFDGDC+HLFYPQS AAKAEVL LFSVEKQLLSSH+G
Sbjct: 456  LRVYLHDDHVVKINPLICGPLSADFDGDCIHLFYPQSIAAKAEVLGLFSVEKQLLSSHSG 515

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTVLQIL 541
            +LNLQ             + YFL KAA QQLAMF SS +P P LL   S    WT LQIL
Sbjct: 516  NLNLQLANDSLLSLKMMFRKYFLGKAAAQQLAMFVSSYLPPPALLGVRSGSLHWTALQIL 575

Query: 542  QTALPVLFDSSGERHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSLQ 718
            QT LP  FD  G+ + I  S  ++ DF+++ +PSL+NEI+TSIFF+KGPEEVLKFF+SLQ
Sbjct: 576  QTVLPASFDCHGDSYLIKNSNFLKFDFDRDAMPSLINEILTSIFFQKGPEEVLKFFDSLQ 635

Query: 719  PLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLR 898
            PLLME++F+ GFSVGL+D+S+P + +Q +Q+++Q +SPLLY LRS++NELVELQLEN LR
Sbjct: 636  PLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQLENHLR 695

Query: 899  LEKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVL 1078
              KVP  NFILKLS++G L DSKS+SA NKVVQQI FLGLQLSDKG+FYS++L+ED+A L
Sbjct: 696  SVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVASL 755

Query: 1079 FQTKHPSG-VDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKN 1255
            F  ++ S  +DYPS ++GL+K CFFHGLDPYEEMVHSIS+REVMVRSSRGLTEPGTLFKN
Sbjct: 756  FHNRYSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPGTLFKN 815

Query: 1256 LMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSG-IDSQSFFPAGEPVGVLAATAMSNPA 1432
            LMAILRDVVICYDGTVRNVCSNSIIQ EY  K+G +   S FP GEPVGVLAATAMS PA
Sbjct: 816  LMAILRDVVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPGEPVGVLAATAMSTPA 875

Query: 1433 YKAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQENAAYLVK 1612
            YKAVLDS+PSSN+SW+MMKEILLCKV F N+PIDRRVILYLN+C+CGR+YC ENAAY+VK
Sbjct: 876  YKAVLDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKYCNENAAYVVK 935

Query: 1613 NQLKKVSLKDAAVEFMIEYRSSENDA----GLVGHIHRN--KELLKKFNITGHEVLDKCQ 1774
            + LKKV+LKDAA++FMIEY      +    GLVGH+H N  + LLK+ NI   EVL +CQ
Sbjct: 936  SHLKKVTLKDAAMDFMIEYNRQPTPSGLGPGLVGHVHLNRVRMLLKELNIDMTEVLRRCQ 995

Query: 1775 ENIFSFKKKKNIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETCDVQLEGVSH 1954
            E + SFKKKK    +  R                 +  DMPCL+F W +T DV LE  +H
Sbjct: 996  ETMSSFKKKKKKIAHALR--FSISEHCAFHQWNGEESIDMPCLIF-WHQTRDVHLERTAH 1052

Query: 1955 ILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVK 2134
            ILA  + P+L ETIIKGDPRI + ++IW SPD+T+W +NPS+ + GELA+D+ LEK+AVK
Sbjct: 1053 ILADIVFPLLSETIIKGDPRIKSASVIWISPDSTSWQKNPSRWQDGELALDVCLEKSAVK 1112

Query: 2135 QKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKG 2314
            Q GDAWR V+D CLP++HLIDT+RSVPYAI QVQELLG+SCAFDQ +QRL  SV+MV+KG
Sbjct: 1113 QNGDAWRNVLDCCLPVLHLIDTRRSVPYAIKQVQELLGISCAFDQMIQRLSKSVSMVSKG 1172

Query: 2315 VLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLF-------------- 2452
            VL +HLILL NSMTC G +IGF  GGYK LSR+L ++VPFTEATLF              
Sbjct: 1173 VLGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATLFVSPFHSLVLSLYMK 1232

Query: 2453 --------------TPRKCFEKAAEK 2488
                          TPRKCFEKAAEK
Sbjct: 1233 FNFFFLFFLNGXYTTPRKCFEKAAEK 1258


>gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus guttatus]
          Length = 2113

 Score = 1100 bits (2846), Expect = 0.0
 Identities = 562/836 (67%), Positives = 660/836 (78%), Gaps = 7/836 (0%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVD KLCLTY+DG S YSLREGS GHT LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA
Sbjct: 367  LVDEKLCLTYRDGLSQYSLREGSKGHTSLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 426

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            LSVYVHDDHTVKINPLICGPLSADFDGDC+HLFYPQS  AKAEVLELFSVEKQLLSSHTG
Sbjct: 427  LSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLEAKAEVLELFSVEKQLLSSHTG 486

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTVLQIL 541
            + NLQ             + YFL +AA QQLAMFA + + +P + K  +SG LWT  QIL
Sbjct: 487  AFNLQLANDSLLSLKVLFRKYFLSRAAAQQLAMFAPNVLSRPSVSKS-ASGPLWTAPQIL 545

Query: 542  QTALPVLFDSSGERHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSLQ 718
            +  LP  FDSSGERH I +SE++ VDF+ + +  +VN+IVTS+FF KGPEEV++FFNS+Q
Sbjct: 546  ELTLPPSFDSSGERHVISKSEVLSVDFSWDGMTPIVNDIVTSLFFLKGPEEVIRFFNSIQ 605

Query: 719  PLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLR 898
            PLLMENL+  GFSV L +F LP  V+++IQE+LQ +SPLL+HLR+SY+E + LQ++N LR
Sbjct: 606  PLLMENLYTEGFSVSLREFFLPLDVLESIQENLQKISPLLFHLRASYSESIALQIDNYLR 665

Query: 899  LEKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVL 1078
              K+PV NF+ K S +G LIDSKS+SA +KVVQQI FLG+QLSDKGKFY+ TLV+DM+ L
Sbjct: 666  NVKIPVTNFV-KSSAVGRLIDSKSESALSKVVQQIGFLGIQLSDKGKFYTETLVQDMSSL 724

Query: 1079 FQTKHPSGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKNL 1258
            FQ K+PS   YP+ ++ L+    F GL+PY+EMVHSI+SREV+VRS+RGLTEPGTLFKNL
Sbjct: 725  FQKKYPSCDGYPAEEFSLVSRPLFRGLNPYQEMVHSIASREVIVRSTRGLTEPGTLFKNL 784

Query: 1259 MAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAYK 1438
            MAILRDVVIC+DGTVRN+CSNSIIQFEY   +  +  S F AG+PVGVLAATAMSNPAYK
Sbjct: 785  MAILRDVVICHDGTVRNMCSNSIIQFEYGVNTA-NIASEFCAGDPVGVLAATAMSNPAYK 843

Query: 1439 AVLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQENAAYLVKNQ 1618
            AVLDSS SSN+SWEMMKEILLC V F ND  DRRVILYL+ C CGR++CQE+AA +VKNQ
Sbjct: 844  AVLDSSSSSNSSWEMMKEILLCGVSFKNDITDRRVILYLSHCDCGRKHCQESAALVVKNQ 903

Query: 1619 LKKVSLKDAAVEFMIEYRSS------ENDAGLVGHIHRNKELLKKFNITGHEVLDKCQEN 1780
            LKKVSLKD A+EF+IEYRS       E   GLVGHIH NK  L + NI+  +VL+KC+E 
Sbjct: 904  LKKVSLKDTAMEFLIEYRSQSVHESHETSHGLVGHIHLNKTQLVQSNISMDDVLEKCRET 963

Query: 1781 IFSFKKKKNIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETCDVQLEGVSHIL 1960
            I    KKK +   FK+                 K  D+PC+ F WQ   D  LE  S+ L
Sbjct: 964  IILQHKKKKVGNLFKKVELSVSDCCSFCQSSKSKLTDVPCIQFFWQGAPDNLLERASYFL 1023

Query: 1961 AAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVKQK 2140
            A  +CPVLL+TIIKGDPRI T N++W SPDT TW R+PSK+  GELA+DIVLEK AV++ 
Sbjct: 1024 ADTVCPVLLQTIIKGDPRISTANVVWLSPDTPTWIRSPSKSPIGELALDIVLEKEAVRKS 1083

Query: 2141 GDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKGVL 2320
            GDAWR+V+DSCLP++HLIDT+RS+PY I QVQELLG+SCAF+QAVQRL  SVTMVTKGVL
Sbjct: 1084 GDAWRVVMDSCLPVMHLIDTQRSIPYGIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVL 1143

Query: 2321 KEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLFTPRKCFEKAAEK 2488
            K+HL+LLGNSMTCAGTLIGF  GG K LSR L V+VPF  ATLFTPRKCFEKAAEK
Sbjct: 1144 KDHLLLLGNSMTCAGTLIGFNSGGIKALSRLLGVQVPFMNATLFTPRKCFEKAAEK 1199


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score = 1099 bits (2843), Expect = 0.0
 Identities = 549/847 (64%), Positives = 656/847 (77%), Gaps = 18/847 (2%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVD  LCLT++DG STYSLREGS GHTFLR GQ+VHRRIMDGD VFINRPPTTHKHSLQA
Sbjct: 157  LVDKNLCLTFRDGLSTYSLREGSKGHTFLRLGQMVHRRIMDGDIVFINRPPTTHKHSLQA 216

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            L VY+HDDH VKINPL+CGPL+ADFDGDCVHLFYPQS +A+AEVLELFSVEKQLLSSH+G
Sbjct: 217  LRVYIHDDHVVKINPLMCGPLAADFDGDCVHLFYPQSLSARAEVLELFSVEKQLLSSHSG 276

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKG----------HSS 511
            +LNLQ             ++YFLD+A+  QLAM+ASS +P P L K           HSS
Sbjct: 277  NLNLQLSTDSLLSLKTMFEVYFLDRASANQLAMYASSLLPSPALWKACSSNAKKKKAHSS 336

Query: 512  GELWTVLQILQTALPVLFDSSGERHRIVRSEIMEVDFNKEL-PSLVNEIVTSIFFEKGPE 688
            G  WT  Q+LQTALP  F+  G+R  I  SEI+++DFN+++  S++++++TS+FF K P+
Sbjct: 337  GPRWTAQQVLQTALPSHFECHGDRLLIHDSEILKLDFNRDIVASVISDVLTSLFFNKSPK 396

Query: 689  EVLKFFNSLQPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNEL 868
            + L FF+SLQPLLMENLF+ GFSV L DF  P S +QNIQ ++QD+SPLL  LRSS+NEL
Sbjct: 397  DALDFFDSLQPLLMENLFSEGFSVSLHDFFFPKSELQNIQRNIQDLSPLLLQLRSSFNEL 456

Query: 869  VELQLENRLRLEKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYS 1048
            V++Q EN +R  K PV NFIL  S +G++IDS+SDSA +K+VQQI FLGLQLSD+ KFYS
Sbjct: 457  VQVQFENHIREFKSPVGNFILISSALGSMIDSRSDSAIDKIVQQIGFLGLQLSDRRKFYS 516

Query: 1049 RTLVEDMAVLFQTKHPSGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGL 1228
            R LVED+A LF  K+P    YPS ++G +  CFFHGLDPYEE+VHSI++REV+VRSS+GL
Sbjct: 517  RGLVEDVASLFHQKYPFADVYPSEEFGFVSRCFFHGLDPYEEIVHSIATREVIVRSSKGL 576

Query: 1229 TEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLA 1408
             EPGTLFKNLMA+LRDVVICYDGTVRN+ SNS+IQFEY    G+ SQ+ FPAG+PVGVLA
Sbjct: 577  AEPGTLFKNLMAVLRDVVICYDGTVRNISSNSVIQFEYG-VGGMQSQNLFPAGDPVGVLA 635

Query: 1409 ATAMSNPAYKAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQ 1588
            ATAMSNPAYKAVLDSSP+SN+SW+MMKEIL C+  F ND  DRRVILYLNDC CGR+YCQ
Sbjct: 636  ATAMSNPAYKAVLDSSPNSNSSWDMMKEILFCRANFRNDINDRRVILYLNDCCCGRKYCQ 695

Query: 1589 ENAAYLVKNQLKKVSLKDAAVEFMIEYR-------SSENDAGLVGHIHRNKELLKKFNIT 1747
            ENA+ LVKN LKKVSL+DAA+E  IEY+       S E DAGLVGHIH N  LLK   I 
Sbjct: 696  ENASCLVKNHLKKVSLRDAAIELAIEYKRPKLEPESCEIDAGLVGHIHLNSGLLKASGIG 755

Query: 1748 GHEVLDKCQENIFSFKKKKNIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETC 1927
             H++L KC+E +   +KKK    +FKR                 KW DMPCL F WQ+  
Sbjct: 756  MHDILQKCEEQVNLLRKKKKYGYHFKR-ILLSVSDCCFFNHSDSKWTDMPCLKFFWQDMT 814

Query: 1928 DVQLEGVSHILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVD 2107
            D  LE   HI+A  ICPVLL+TIIKGDPRI TVNIIW +P TTTW ++P  + KGELAV+
Sbjct: 815  DTDLERTKHIMADMICPVLLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSSTKGELAVE 874

Query: 2108 IVLEKAAVKQKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLF 2287
            + LEK AV+  GDAWRIV+D CLP+ HLIDT+RS+PYAI Q+Q+L G+SCAFDQAVQRL 
Sbjct: 875  VALEKEAVRLTGDAWRIVLDCCLPVFHLIDTRRSIPYAIKQIQDLFGISCAFDQAVQRLS 934

Query: 2288 ASVTMVTKGVLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLFTPRKC 2467
             SVTMVTKGVLKEHL+LL +SMTCAG L+GF   G K L R+L V+VPFTEATL+TPRKC
Sbjct: 935  TSVTMVTKGVLKEHLLLLASSMTCAGNLVGFNTSGIKALCRALNVQVPFTEATLYTPRKC 994

Query: 2468 FEKAAEK 2488
            FE+A+EK
Sbjct: 995  FERASEK 1001


>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
            arietinum]
          Length = 2263

 Score = 1077 bits (2784), Expect = 0.0
 Identities = 538/838 (64%), Positives = 642/838 (76%), Gaps = 8/838 (0%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVD  +CLTYK+G STYSLREGS GHT+L+PGQ+VHRRIMDGD VFINRPPTTHKHSLQA
Sbjct: 370  LVDENMCLTYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDVVFINRPPTTHKHSLQA 429

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            L VY+HDDHTVKINPLICGPL ADFDGDCVHLFYPQS AAKAEVLELFSVEKQLLSSH+G
Sbjct: 430  LVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSG 489

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTVLQIL 541
            +LNLQ             K  FLD+AA  Q+AMF S  +P P L K  S    WT +Q+L
Sbjct: 490  NLNLQLSTDSLLSLKMLVKSCFLDRAAANQMAMFLSLPLPMPALFKAGSGDSYWTSVQML 549

Query: 542  QTALPVLFDSSGERHRIVRSEIMEVDFNKEL-PSLVNEIVTSIFFEKGPEEVLKFFNSLQ 718
            Q ALP  FD +G R+ I + EI+E DF ++L PS++NE+  SIFF +GP+E L FF+ LQ
Sbjct: 550  QCALPSSFDCTGGRYLIRQREILEFDFTRDLLPSIINEVAASIFFSQGPKEALNFFDVLQ 609

Query: 719  PLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLR 898
            P LMEN+FA G+SVGL+DFS+  +V + I   +  +SPLL+ LR  Y ELV  QLE  ++
Sbjct: 610  PFLMENIFAHGYSVGLQDFSISRAVKRVINRSIGKISPLLHQLRVVYKELVAQQLEKHMQ 669

Query: 899  LEKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVL 1078
              ++PV NF LK + +G+LIDSKS SA +KVVQQI FLG QL ++GKFYS+ LVED+   
Sbjct: 670  DIELPVINFALKSTKLGDLIDSKSKSALDKVVQQIGFLGQQLFERGKFYSKGLVEDVGSH 729

Query: 1079 FQTK-HPSGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKN 1255
            F  K    G  YPS ++GL+K CFFHGLDPYEE+VHSI++RE++VRSSRGL+EPGTLFKN
Sbjct: 730  FHVKCFYDGDGYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIVRSSRGLSEPGTLFKN 789

Query: 1256 LMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAY 1435
            LMAILRDVVICYDGTVRNVCSNSIIQFEY  +SG  SQ  FPAGEPVGVLAAT+MSNPAY
Sbjct: 790  LMAILRDVVICYDGTVRNVCSNSIIQFEYGIQSGDKSQPLFPAGEPVGVLAATSMSNPAY 849

Query: 1436 KAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQENAAYLVKN 1615
            KAVLD+SPSSN+SWE MKEILLCKV F N+P DRRVILYLNDC CGR YC+ENAAYLVKN
Sbjct: 850  KAVLDASPSSNSSWEFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRSYCRENAAYLVKN 909

Query: 1616 QLKKVSLKDAAVEFMIEYR------SSENDAGLVGHIHRNKELLKKFNITGHEVLDKCQE 1777
            QL+KVSLKDAA++F +EY+          DAGLVGHIH N+ +L+K  I   EV  KCQE
Sbjct: 910  QLRKVSLKDAALDFTVEYQQQRRRNDGSEDAGLVGHIHLNEAMLEKLKINMSEVYQKCQE 969

Query: 1778 NIFSFKKKKNIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETCDVQLEGVSHI 1957
             + SF +KK +  +F++                      PC+   W +  D  L+  + +
Sbjct: 970  RLNSFSRKKKVFHFFRKTELFFSESCSSLN------SSAPCVTILWPDGDD--LDQTTKV 1021

Query: 1958 LAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVKQ 2137
            LA  ICPVLL+TII+GDPRI + NIIW +P T TW RNPSK+  GELA+D++LEK AVKQ
Sbjct: 1022 LADMICPVLLDTIIQGDPRISSANIIWVNPGTNTWVRNPSKSSNGELALDVILEKEAVKQ 1081

Query: 2138 KGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKGV 2317
             GDAWRI++DSCLP++HLIDT+RS PYAI Q+QELLG+SC FDQA+QRL ASV MV KGV
Sbjct: 1082 SGDAWRIILDSCLPVLHLIDTRRSTPYAIKQIQELLGISCTFDQAIQRLAASVRMVAKGV 1141

Query: 2318 LKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLFTPRKCFEKAAEKR 2491
            L+EHLILL +SMTC G L+GF  GGYK L+R L ++VPFT+ATLFTPRKCFE+AAEKR
Sbjct: 1142 LREHLILLASSMTCGGNLVGFNTGGYKTLARQLNIQVPFTDATLFTPRKCFERAAEKR 1199


>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2082

 Score = 1065 bits (2753), Expect = 0.0
 Identities = 536/838 (63%), Positives = 646/838 (77%), Gaps = 9/838 (1%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVD  LCLTYK+G STYSLREGS GH +L+PGQ+VHRRIMDGD VFINRPPTTHKHSLQA
Sbjct: 370  LVDEHLCLTYKEGGSTYSLREGSKGHIYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQA 429

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            L VY+H+DHTVKINPLICGPL ADFDGDCVHLFYPQS AAKAEV+ELFSVE QLLSSH+G
Sbjct: 430  LYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVENQLLSSHSG 489

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTVLQIL 541
            +LNLQ             K  F D+AA  QLAMF    +P+P LLK  S    WT +QIL
Sbjct: 490  NLNLQLSTDSLLSLKMLVKRCFFDRAAANQLAMFILLPLPRPALLKASSGDACWTSIQIL 549

Query: 542  QTALPVLFDSSGERHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSLQ 718
            Q ALP+ FD +G R+ I +SEI+E +F+++ LP+ VNEI  S+FF KGP+E L FF+ LQ
Sbjct: 550  QCALPLGFDCTGGRYLIRQSEILEFEFSRDVLPATVNEIAASVFFGKGPKEALNFFDVLQ 609

Query: 719  PLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLR 898
            P LME+LFA GFSV LE+FS+  ++ + I++ +  +S LLY LRS YNELV  QLE  +R
Sbjct: 610  PFLMESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLLYQLRSLYNELVAQQLEKHIR 669

Query: 899  LEKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVL 1078
              ++P+ NF LK + +G+LIDSKS SA +KVVQQI FLG QL D+G+FYS+ LV+D+A  
Sbjct: 670  DVELPIINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRFYSKGLVDDVASH 729

Query: 1079 FQTKHP-SGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKN 1255
            F  K    G  YPS +YGL+K CFF+GLDPYEEMVHSIS+RE+MVRSSRGL+EPGTLFKN
Sbjct: 730  FHAKCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGTLFKN 789

Query: 1256 LMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAY 1435
            LMAILRDVVICYDGTVRN+CSNSIIQFEY  ++G  S+  FPAGEPVGVLAATAMSNPAY
Sbjct: 790  LMAILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKSEHLFPAGEPVGVLAATAMSNPAY 849

Query: 1436 KAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQENAAYLVKN 1615
            KAVLD+SPSSN+SWE+MKEILLCKV F N+ +DRRVILYLNDC CG  YC+ENAAY VK+
Sbjct: 850  KAVLDASPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSYCRENAAYSVKD 909

Query: 1616 QLKKVSLKDAAVEFMIEYR-------SSENDAGLVGHIHRNKELLKKFNITGHEVLDKCQ 1774
            QL+KVSLKDAAVEF+IEY+       +SE D GLVGHI+ ++ +L++  I+   V DKC 
Sbjct: 910  QLRKVSLKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEMMLEELKISMAYVFDKCH 969

Query: 1775 ENIFSFKKKKNIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETCDVQLEGVSH 1954
            E + SF +KK + Q  K                       PCL F W +  D  L+    
Sbjct: 970  ERLKSFSQKKKVNQSLKNIELSFSESCSSSHPA------APCLTF-WLKNYDSDLDNAVK 1022

Query: 1955 ILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVK 2134
            +LA KICPVL +TII+GDPRI + +IIW SPDT TW RNP K+  GELA+DI+LEK AVK
Sbjct: 1023 VLAEKICPVLFKTIIQGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIILEKEAVK 1082

Query: 2135 QKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKG 2314
            Q GDAWR+V+D+CLP++HLIDT+RS+PYAI Q+QELLG+SC FDQA+QR+ ASV MV KG
Sbjct: 1083 QSGDAWRVVLDACLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAASVKMVAKG 1142

Query: 2315 VLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLFTPRKCFEKAAEK 2488
            VL+EHLILL +SMTC G L+GF +GGYK LSR L ++VPFT+ATLFTP+KCFE+AAEK
Sbjct: 1143 VLREHLILLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFTDATLFTPKKCFERAAEK 1200


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2020

 Score = 1060 bits (2740), Expect = 0.0
 Identities = 535/838 (63%), Positives = 643/838 (76%), Gaps = 9/838 (1%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVD  LCLTYK+G STYSLREGS GH +L+PGQ+VHRRIMDGD VFINRPPTTHKHSLQA
Sbjct: 370  LVDEHLCLTYKEGVSTYSLREGSKGHIYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQA 429

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            L VY+H+DHTVKINPLICGPL ADFDGDCVHLFYPQS AAKAEV+ELF+VE QLLSSH+G
Sbjct: 430  LYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFAVENQLLSSHSG 489

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTVLQIL 541
            +LNLQ             K  FL +AA  QLAMF    +P+P LLK  S    WT +QIL
Sbjct: 490  NLNLQLSTDSLLALKMLVKRCFLGRAAANQLAMFLLLPLPRPALLKASSDDACWTSIQIL 549

Query: 542  QTALPVLFDSSGERHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSLQ 718
            Q ALP+ FD +G R+ I +SEI+E DF+++ LP+ +NEI  SIFF KGP E LKFF+ LQ
Sbjct: 550  QGALPMGFDCTGGRYLIRQSEILEFDFSRDALPATINEIAASIFFGKGPMEALKFFDVLQ 609

Query: 719  PLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLR 898
            P LME+LFA GFSV LE+FS+  ++ + I+  +   S LLY LRS YNELV  QLE  ++
Sbjct: 610  PFLMESLFAEGFSVSLEEFSISRAIKRIIRRSIGKASSLLYQLRSLYNELVAQQLEKHIQ 669

Query: 899  LEKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVL 1078
              ++P+ NF LK + +G+LIDSKS S  +KVVQQ+ FLG QL D+G+FYS+ LV+D+A  
Sbjct: 670  DVELPIINFALKSTKLGDLIDSKSKSTIDKVVQQVGFLGQQLFDRGRFYSKGLVDDVASH 729

Query: 1079 FQTKHP-SGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKN 1255
            F  K    G  YPS +YGL+K CFF+GLDPYEEMVHSIS+RE+MVRSSRGL+EPGTLFKN
Sbjct: 730  FHAKCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGTLFKN 789

Query: 1256 LMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAY 1435
            LMAILRDVVICYDGTVRN+CSNSIIQFEY  ++G  ++  FPAGEPVGVLAATAMSNPAY
Sbjct: 790  LMAILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKTEHLFPAGEPVGVLAATAMSNPAY 849

Query: 1436 KAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQENAAYLVKN 1615
            KAVLD+SP+SN+SWE+MKEILLCKV F N+P+DRRVILYLNDC CG   C+ENAAY VKN
Sbjct: 850  KAVLDASPNSNSSWELMKEILLCKVNFRNEPVDRRVILYLNDCDCGGSCCRENAAYSVKN 909

Query: 1616 QLKKVSLKDAAVEFMIEYR-------SSENDAGLVGHIHRNKELLKKFNITGHEVLDKCQ 1774
            QL+KVSLK+AAVEF+IEY+       +SE DAGLVGHI+ ++ +L++  I+   V +KC 
Sbjct: 910  QLRKVSLKNAAVEFIIEYQQQRTQKENSETDAGLVGHIYLDEMMLEELKISMANVFEKCL 969

Query: 1775 ENIFSFKKKKNIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETCDVQLEGVSH 1954
            E + SF +KK + QY K                       PCL F W +  D  L+    
Sbjct: 970  ERLKSFSRKKKVNQYLKNIELSFSESCSSSHPA------APCLTF-WLKNHDSDLDNAVK 1022

Query: 1955 ILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVK 2134
            +L+  ICPVL ETIIKGDPRI + +IIW SPDT TW RNP K+  GELA+DIVLE+ AVK
Sbjct: 1023 VLSENICPVLFETIIKGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIVLEEEAVK 1082

Query: 2135 QKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKG 2314
            Q GDAWRIV+DSCLP++HLIDT+RS+PYAI Q+QELLG+SC FDQA+QR+ ASV MV KG
Sbjct: 1083 QSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAASVKMVAKG 1142

Query: 2315 VLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLFTPRKCFEKAAEK 2488
            VL+EHLILL +SMTC G L+GF  GGYK LSR L ++VPFT+ATLFTP+KCFE+AAEK
Sbjct: 1143 VLREHLILLASSMTCGGNLVGFNTGGYKALSRQLNIQVPFTDATLFTPKKCFERAAEK 1200


>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
            gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
            subunit [Medicago truncatula]
          Length = 2032

 Score = 1056 bits (2732), Expect = 0.0
 Identities = 538/863 (62%), Positives = 643/863 (74%), Gaps = 34/863 (3%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVD  LCLTYK+G STYSLREGS GHT+L+PGQ+VHRRIMDGDTVFINRPPTTHKHSLQA
Sbjct: 452  LVDENLCLTYKEGMSTYSLREGSKGHTYLKPGQIVHRRIMDGDTVFINRPPTTHKHSLQA 511

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            L VY+HDDHTVKINPLICGPL ADFDGDCVHLFYPQS AAKAEVLELFSVEKQLLSSH+G
Sbjct: 512  LVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSG 571

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTVLQIL 541
            +LNLQ             K  FLD+ A  Q+AMF    +P P LLK  +    WT +QIL
Sbjct: 572  NLNLQLSADSLLSLKMLVKSCFLDRVAANQMAMFLLLPLPMPALLKATTGDSYWTSIQIL 631

Query: 542  QTALPVLFDSSGERHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSLQ 718
            Q ALP  FD +G R+ I + EI+E DF ++ LPS++NEI  SIFF KGP+E L FF+ +Q
Sbjct: 632  QCALPFSFDCTGGRYLIRQREILEFDFTRDILPSIINEIAASIFFSKGPQEALNFFDVIQ 691

Query: 719  PLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLR 898
            P LMEN+FA GFSVGL+DFS+  +V + I   +  +SPLL  LR  Y ELV  QLE  ++
Sbjct: 692  PFLMENIFAHGFSVGLQDFSISRAVKRVINRSIGKVSPLLRQLRGMYKELVAQQLEKVIQ 751

Query: 899  LEKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVL 1078
              ++PV NF LK + +G+LIDSKS SA +KV+QQI FLG QL ++GKFYS+ LVED+A  
Sbjct: 752  DIELPVINFALKSTKLGDLIDSKSKSAVDKVIQQIGFLGQQLFERGKFYSKGLVEDVASH 811

Query: 1079 FQTK-HPSGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKN 1255
            FQ K      DYPS ++GL+K CFFHGLDPYEE+VHSI++RE++ RSSRGL+EPGTLFKN
Sbjct: 812  FQLKCFYDKDDYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIDRSSRGLSEPGTLFKN 871

Query: 1256 LMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAY 1435
            LMAILRDVVICYDGTVRNVCSNSIIQFEY  +SG  +Q  FPAGEPVGVLAAT+MSNPAY
Sbjct: 872  LMAILRDVVICYDGTVRNVCSNSIIQFEYGIQSGDAAQHLFPAGEPVGVLAATSMSNPAY 931

Query: 1436 KAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQENAAYLVKN 1615
            KAVLD+SPSSN+SW  MKEILLCKV F N+P DRRVILYLNDC CGR YC+ENAAYLV+N
Sbjct: 932  KAVLDASPSSNSSWGFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRNYCRENAAYLVQN 991

Query: 1616 QLKKVSLKDAAVEFMIEY------RSSENDAGLVGHIHRNKELLKKFNITGHEVLDKCQE 1777
            QL+KVSLKDAA++F++EY      R    DAGLV HI   +  L++  I   EV  KCQE
Sbjct: 992  QLRKVSLKDAALDFIVEYQQQRRRRDGTEDAGLVCHIRLKEVKLEELKINMTEVYQKCQE 1051

Query: 1778 NIFSFKKKKNIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETCDVQLEGVSHI 1957
             + SF +KK ++ +FKR                 ++C  PC+ F W +   V L+  + +
Sbjct: 1052 KLNSFSRKKKLSPFFKR-----------TELIFSEFCSAPCVTFLWPD--GVDLDQTTKV 1098

Query: 1958 LAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVKQ 2137
            LA  ICPVLLETII+GDPRI + +IIW +P T TW RNPSK+  GELA+D++LEK AVKQ
Sbjct: 1099 LADMICPVLLETIIQGDPRISSASIIWVNPGTNTWVRNPSKSSNGELALDVILEKEAVKQ 1158

Query: 2138 KGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKGV 2317
             GDAWRIV+DSCLP++HLIDT+RS+PYAI Q+QELLG++C FDQA+QRL ASV MV KGV
Sbjct: 1159 SGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGIACTFDQAIQRLAASVRMVAKGV 1218

Query: 2318 LKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLF--------------- 2452
            L+EHLILL +SMTC G L+GF  GGYK L+R L ++VPFT+ATLF               
Sbjct: 1219 LREHLILLASSMTCGGNLVGFNTGGYKTLARQLDIQVPFTDATLFVSALVISKLQDVFCY 1278

Query: 2453 -----------TPRKCFEKAAEK 2488
                       TPRKCFE+AAEK
Sbjct: 1279 YFSYFVNVIMQTPRKCFERAAEK 1301


>ref|XP_007133762.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
            gi|561006762|gb|ESW05756.1| hypothetical protein
            PHAVU_011G206900g [Phaseolus vulgaris]
          Length = 2052

 Score = 1043 bits (2698), Expect = 0.0
 Identities = 533/838 (63%), Positives = 637/838 (76%), Gaps = 9/838 (1%)
 Frame = +2

Query: 2    LVDNKLCLTYKDGSSTYSLREGSMGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 181
            LVD  LCLTYK+G ST+SLREGS GH +L+PGQ+VHRRIMDGD VFINRPPTTHKHSLQA
Sbjct: 370  LVDENLCLTYKEGVSTFSLREGSKGHIYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQA 429

Query: 182  LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSFAAKAEVLELFSVEKQLLSSHTG 361
            L VY+HDDHTVKINPLICGPL ADFDGDCVHLFYPQS AAKAEV+ELFSVE QLLSSH+G
Sbjct: 430  LFVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVENQLLSSHSG 489

Query: 362  SLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTVLQIL 541
            +LNLQ             K  F D+AA  QLAMF    + +P L+K  S    WT +Q+L
Sbjct: 490  NLNLQLSTDSLLSLKMLVKRCFFDRAAANQLAMFLLP-LGRPGLIKASSGDSYWTSIQML 548

Query: 542  QTALPVLFDSSGERHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSLQ 718
            Q ALP+ FD SG R+ I +SEI+E DFN++ LP+ +NEI  SIFF KGP+E LKFF+ LQ
Sbjct: 549  QCALPLCFDCSGGRYLIRQSEILEFDFNRDVLPATINEIAASIFFSKGPKEALKFFDVLQ 608

Query: 719  PLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLR 898
            P L E++FA GFSV L+DFS+  +  + I   +  +S LL+ LRS YNELV  QLE  +R
Sbjct: 609  PFLTESIFADGFSVSLQDFSISRATKRIISRSIGKVSSLLHQLRSIYNELVAQQLEKLIR 668

Query: 899  LEKVPVANFILKLSTMGNLIDSKSDSANNKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVL 1078
              + PV NF LK + +G+LIDSKS SA +KVVQQI FLG QL D+G+FYS+ LVED+A  
Sbjct: 669  DIEHPVINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRFYSKGLVEDVASH 728

Query: 1079 FQTKHP-SGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKN 1255
            F  K    G  YPS +YGL+K  FF+GLDPYEEMVHSIS+REVMVRSSRGL+EPGTLFKN
Sbjct: 729  FHVKCCYDGDGYPSAEYGLLKGSFFNGLDPYEEMVHSISTREVMVRSSRGLSEPGTLFKN 788

Query: 1256 LMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAY 1435
            LMAILRDVVICYDGTVRN+CSNSIIQFEY  +    ++  FPAGEPVGVLAATAMSNPAY
Sbjct: 789  LMAILRDVVICYDGTVRNICSNSIIQFEYGLEK---TEHLFPAGEPVGVLAATAMSNPAY 845

Query: 1436 KAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIDRRVILYLNDCSCGREYCQENAAYLVKN 1615
            KAVLD+SP+SN+SWE+MKEILLCKV F N+P+DRRVILYLNDC CG  YC+ENAAY VK+
Sbjct: 846  KAVLDASPNSNSSWELMKEILLCKVNFRNEPVDRRVILYLNDCDCGGNYCRENAAYKVKD 905

Query: 1616 QLKKVSLKDAAVEFMIEYR-------SSENDAGLVGHIHRNKELLKKFNITGHEVLDKCQ 1774
            QL+KV+LKDAAVEF+IEY+       +SE DAGLVGHI+ ++ +L++  I+   V  KC 
Sbjct: 906  QLRKVNLKDAAVEFVIEYQEQRIQKGNSETDAGLVGHIYLDEMMLEELKISMAHVFQKCL 965

Query: 1775 ENIFSFKKKKNIAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETCDVQLEGVSH 1954
            E + SF  +K   Q+ KR                      PCL F W E  + + +    
Sbjct: 966  ERLKSFSPRKKANQFLKRTELSYSESCSSSHPAA------PCLTFVWVEDRNNEFDYTVK 1019

Query: 1955 ILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVK 2134
            IL+ KICPVLLETII+GDPRI + +IIW +PDT TW RNP K+  GELA+DI+LEK  VK
Sbjct: 1020 ILSEKICPVLLETIIQGDPRISSASIIWVTPDTNTWVRNPYKSSTGELALDIILEKEVVK 1079

Query: 2135 QKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKG 2314
            Q GDAWRIV+DSCLP++HLIDT+RS+PYAI Q QELLG+SC FDQA+QR+ ASV MV KG
Sbjct: 1080 QSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQTQELLGISCTFDQAIQRVAASVKMVAKG 1139

Query: 2315 VLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTEATLFTPRKCFEKAAEK 2488
            VL+EHLILL +SMTC G ++GF  GGYK LSR L ++VPFT+ATLFTP+KCFE+AAEK
Sbjct: 1140 VLREHLILLASSMTCGGNMVGFNTGGYKALSRQLNIQVPFTDATLFTPKKCFERAAEK 1197