BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia24_contig00017139
         (758 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein A...    63   1e-18
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]        68   2e-18
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    64   2e-18
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678...    64   4e-18
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    67   9e-18
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]            67   9e-18
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...    66   2e-17
ref|XP_004305958.1| PREDICTED: uncharacterized protein LOC101308...    94   4e-17
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ...    58   1e-16
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    58   6e-16
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta...    62   1e-15
ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein A...    59   1e-15
ref|XP_004174148.1| PREDICTED: uncharacterized protein LOC101232...    62   1e-15
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]            54   2e-14
ref|XP_004173049.1| PREDICTED: putative ribonuclease H protein A...    62   3e-14
ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcript...    55   3e-14
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...    70   4e-14
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali...    61   7e-14
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    53   2e-13
dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like ...    54   4e-13

>ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 288

 Score = 63.2 bits (152), Expect(2) = 1e-18
 Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 4/168 (2%)
 Frame = -3

Query: 756 IVTKEESN*VKWI-FFRLKYKSFWAVRCSQDCPWYWRKILKIRGRFFGLVKCCIGDGNKV 580
           ++ K  S  V W+  + LK +S W +       W +R IL+ R      VK  +G+G K 
Sbjct: 42  LLVKSCSLWVAWVEAYILKGRSLWEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKC 101

Query: 579 FLWYDNWHPLGSSYGRVSTRIIYDFASSLDAKVCSIIS-NGGWK*LXXXSNVVLEVIDNC 403
            +W D     G    +   R+IYD  S  DA++   +  +G W+      + ++++ D  
Sbjct: 102 RVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLD-LMDIWDRI 160

Query: 402 -SVAPNVNVEEMYVWLP-TNSTFSIQSTWNCFRGLIPKVDWARLVWQG 265
             V P+ +VE+M+V +P ++ +FSI S     R    +V W+ L+W G
Sbjct: 161 QGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGG 208



 Score = 56.6 bits (135), Expect(2) = 1e-18
 Identities = 25/65 (38%), Positives = 39/65 (60%)
 Frame = -1

Query: 272 GKGHFSKVAFITWLAVRGGLATQDKLTQWRIIERMSCVLCRS*VEDKNHLLFCCDLIALI 93
           G G+  K +F TWLA++  L T+D+L++W     +SC+LC    E ++HL F C     I
Sbjct: 207 GGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGRNYESRDHLFFPCPFGWEI 266

Query: 92  WKQVL 78
           W ++L
Sbjct: 267 WSRIL 271


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score = 68.2 bits (165), Expect(2) = 2e-18
 Identities = 50/154 (32%), Positives = 66/154 (42%), Gaps = 12/154 (7%)
 Frame = -3

Query: 696  SFWAVRCSQDCPWYWRKILKIRGRFFGLVKCCIGDGNKVFLWYDNWHPLGSSYGRVSTRI 517
            SFWAV   Q   W W+++L +R      + C +G+G K   WYDNW  LG  +     RI
Sbjct: 908  SFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNWTSLGPLF-----RI 962

Query: 516  IYDFASS-----LDAKVCSIISNGGWK*LXXXSNVVLEVIDN-CSV-APNVNVEEM--YV 364
            I D   S     L AKV S  S  GW+     S     + D+ C+V  P+   E++  Y 
Sbjct: 963  IGDIGPSSLRVPLLAKVASAFSEDGWRLPVSRSAPAKGIHDHLCTVPVPSTAQEDVDRYE 1022

Query: 363  WLPTN---STFSIQSTWNCFRGLIPKVDWARLVW 271
            W         FS   TW   R       WA  +W
Sbjct: 1023 WSVNGFLCQGFSAAKTWEAIRPKATVKSWASSIW 1056



 Score = 51.2 bits (121), Expect(2) = 2e-18
 Identities = 24/65 (36%), Positives = 35/65 (53%)
 Frame = -1

Query: 269  KGHFSKVAFITWLAVRGGLATQDKLTQWRIIERMSCVLCRS*VEDKNHLLFCCDLIALIW 90
            KG   K AF  W++    L T+ +L  W  I+  +CVLC    E ++HLL  C+  A +W
Sbjct: 1058 KGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSDACVLCSFASESRDHLLLICEFSAQVW 1117

Query: 89   KQVLR 75
            + V R
Sbjct: 1118 RLVFR 1122


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 63.5 bits (153), Expect(2) = 2e-18
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 6/159 (3%)
 Frame = -3

Query: 729 VKWIF-FRLKYKSFWAVRCSQDC-PWYWRKILKIRGRFFGLVKCCIGDGNKVFLWYDNWH 556
           V+W+  + ++  SFW++R +     W WRK+LK R    G  +  I +G  V  W+DNW 
Sbjct: 122 VQWLRQYVIRKGSFWSLRDTSTLGSWMWRKLLKYRHLASGFTQYEIRNGKGVSFWHDNWS 181

Query: 555 PLGSSYGRVSTRIIYDFASSLDAKVCSIISNGGWK*LXXXSNVVLEVIDNCSVAPNVNVE 376
           PLG       TR   D    + A V   +++   +      N +   ++       V  E
Sbjct: 182 PLGPLIAISGTRGCIDMGIDIHATVAEALTHRRRRHRADHLNQMEAQLEELRTKGLVETE 241

Query: 375 EMYVWLPTNS----TFSIQSTWNCFRGLIPKVDWARLVW 271
           ++ +W         +FS + TW   R   P+ +W + +W
Sbjct: 242 DVVLWKGKGGRFKPSFSTKETWADTREQKPRNEWYQGIW 280



 Score = 55.5 bits (132), Expect(2) = 2e-18
 Identities = 25/71 (35%), Positives = 35/71 (49%)
 Frame = -1

Query: 254 KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLCRS*VEDKNHLLFCCDLIALIWKQVLR 75
           K +FITWLA +  L+T D++  W     +SCV C+   E +NHL F C     +W  +  
Sbjct: 287 KYSFITWLATKNRLSTGDRMMSWNAGVNLSCVFCQEQTETRNHLFFTCRYSREVWSGLTS 346

Query: 74  WSLVAVDLVDW 42
             L      DW
Sbjct: 347 KLLTRHYSTDW 357


>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
           putative protein [Arabidopsis thaliana]
          Length = 473

 Score = 64.3 bits (155), Expect(2) = 4e-18
 Identities = 54/170 (31%), Positives = 75/170 (44%), Gaps = 8/170 (4%)
 Frame = -3

Query: 756 IVTKEESN*VKWIFFRLKYK-SFWAVRCSQDC-PWYWRKILKIRGRFFGLVKCCIGDGNK 583
           I++  +S  VKWI   L  K SFWAVR +     W WRKILK R     L K  I +G +
Sbjct: 143 IISHADSLWVKWIQSSLLKKVSFWAVRENTSLGSWMWRKILKFRDIARTLCKVEINNGAR 202

Query: 582 VFLWYDNWHPLGSSYGRVSTRIIYDFASSLDAKVCSIISNGGWK*LXXXSNVVLEVIDNC 403
              WYD+W  LG        R   D   +  A V  + + G  +     +N +  V +  
Sbjct: 203 TSFWYDDWSDLGRLIDSAGDRGAIDLGINKHATV--VEAWGNRRRRRHRTNFLNRVEERL 260

Query: 402 SVAPNV--NVEEMYVWLPT----NSTFSIQSTWNCFRGLIPKVDWARLVW 271
            ++ N     E+  +W        S FS + TWN  R +  KV W + VW
Sbjct: 261 ILSWNSRNQAEDRALWKGKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVW 310



 Score = 53.9 bits (128), Expect(2) = 4e-18
 Identities = 24/71 (33%), Positives = 36/71 (50%)
 Frame = -1

Query: 254 KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLCRS*VEDKNHLLFCCDLIALIWKQVLR 75
           K AF  WLAV   L+T D++T W +    +C+LC   +E ++HL F C     IW+ + +
Sbjct: 317 KHAFCMWLAVHNRLSTGDRMTLWNMGVDATCILCNKALESRDHLFFSCPFATEIWEPLAK 376

Query: 74  WSLVAVDLVDW 42
                    DW
Sbjct: 377 TIYNTCFYTDW 387


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 67.0 bits (162), Expect(2) = 9e-18
 Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
 Frame = -3

Query: 756  IVTKEESN*VKWIFFRL-KYKSFWAVRCS-QDCPWYWRKILKIRGRFFGLVKCCIGDGNK 583
            IV+   S  VKW+   L +  SFW V+ +     W W+K+LK R     L K  +G+G +
Sbjct: 894  IVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQ 953

Query: 582  VFLWYDNWHPLGSSYGRVSTRIIYDFASSLDAKVCSIISNGGWK*LXXXSNVVLEVIDNC 403
               WYDNW  LG    R   R + D   S    V    +N   +      N V  VI++ 
Sbjct: 954  TSFWYDNWSDLGQLLERTGDRGLIDLGISRRMTVEEAWTNRRQR---RHRNDVYNVIEDA 1010

Query: 402  ---SVAPNVNVEEMYVWLPTN----STFSIQSTWNCFRGLIPKVDWARLVW 271
               S       E+  +W   +    +TFS + TW+  R    +V W +++W
Sbjct: 1011 LKKSWDTRTETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIW 1061



 Score = 50.1 bits (118), Expect(2) = 9e-18
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = -1

Query: 254  KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLCRS*VEDKNHLLFCCDLIALIWKQVLR 75
            K +F +WLA  G L T D++  W       C+ C+  +E ++HL F C   ++IW  + R
Sbjct: 1068 KYSFCSWLAAHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIWVDLAR 1127


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score = 67.4 bits (163), Expect(2) = 9e-18
 Identities = 46/156 (29%), Positives = 63/156 (40%), Gaps = 9/156 (5%)
 Frame = -3

Query: 711  RLKYKSFWAVRCSQDCPWYWRKILKIRGRFFGLVKCCIGDGNKVFLWYDNWHPLG---SS 541
            RL + SFW V   Q  PW W+ +L +R      +K  +G+G  V  W+D W  LG     
Sbjct: 763  RLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKY 822

Query: 540  YGRVSTRIIYDFASSLDAKVCSIISNGGWK*LXXXSNVVLEVIDNCSVAP---NVNVEEM 370
             G V +R          AKV   I   GW+     S     ++ + +  P    + V + 
Sbjct: 823  LGDVGSR---PLRIPFSAKVADAIDGSGWRLPLSRSLTADSILSHLASLPPPSPLMVSDS 879

Query: 369  YVWLPTN---STFSIQSTWNCFRGLIPKVDWARLVW 271
            Y W   +     FS   TW   R   P   WAR VW
Sbjct: 880  YSWCVDDVDCQGFSAAKTWEVLRPRRPVKRWARSVW 915



 Score = 49.7 bits (117), Expect(2) = 9e-18
 Identities = 22/63 (34%), Positives = 31/63 (49%)
 Frame = -1

Query: 269  KGHFSKVAFITWLAVRGGLATQDKLTQWRIIERMSCVLCRS*VEDKNHLLFCCDLIALIW 90
            KG   K AF  W A    L T+ +L  W ++    C LC    E ++HLL  CD  + +W
Sbjct: 917  KGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCDFSSQVW 976

Query: 89   KQV 81
            + V
Sbjct: 977  RMV 979


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score = 66.2 bits (160), Expect(2) = 2e-17
 Identities = 45/156 (28%), Positives = 63/156 (40%), Gaps = 9/156 (5%)
 Frame = -3

Query: 711  RLKYKSFWAVRCSQDCPWYWRKILKIRGRFFGLVKCCIGDGNKVFLWYDNWHPLG---SS 541
            RL + SFW V   Q  PW W+ +L +R      +K  +G+G  V  W+D W  LG     
Sbjct: 763  RLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKY 822

Query: 540  YGRVSTRIIYDFASSLDAKVCSIISNGGWK*LXXXSNVVLEVIDNCSVAP---NVNVEEM 370
             G V +R          AKV   I   GW+     S     ++ + +  P    + V + 
Sbjct: 823  LGDVGSR---PLRIPFSAKVADAIDGSGWRLPLSRSLTADSILSHLASLPPPSPLMVSDS 879

Query: 369  YVWLPTN---STFSIQSTWNCFRGLIPKVDWARLVW 271
            Y W   +     FS   TW   R   P   WA+ VW
Sbjct: 880  YSWCVDDVDCQGFSAAKTWEVLRPRRPVKRWAKSVW 915



 Score = 49.7 bits (117), Expect(2) = 2e-17
 Identities = 22/63 (34%), Positives = 31/63 (49%)
 Frame = -1

Query: 269  KGHFSKVAFITWLAVRGGLATQDKLTQWRIIERMSCVLCRS*VEDKNHLLFCCDLIALIW 90
            KG   K AF  W A    L T+ +L  W ++    C LC    E ++HLL  CD  + +W
Sbjct: 917  KGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCDFSSQVW 976

Query: 89   KQV 81
            + V
Sbjct: 977  RMV 979


>ref|XP_004305958.1| PREDICTED: uncharacterized protein LOC101308407 [Fragaria vesca
           subsp. vesca]
          Length = 177

 Score = 94.4 bits (233), Expect = 4e-17
 Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 3/164 (1%)
 Frame = -3

Query: 756 IVTKEESN*VKWIFFR-LKYKSFWAVRCSQDCPWYWRKILKIRGRFFGLVKCCIGDGNKV 580
           ++T + S    WI    L+ KSFW V   Q C W WRK+LKIR      +K  IGDG   
Sbjct: 8   LLTDDSSLWSSWIKVNFLRDKSFWMVSTPQICSWNWRKLLKIRDFIRPSIKHIIGDGKST 67

Query: 579 FLWYDNWHPLGSSYGRVSTRIIYDFASSLDAKVCSIISNGGWK*LXXXSNVVLEVIDNC- 403
           + W+D WHP G    R+    + +     +A V SI+    W      ++ +L V  N  
Sbjct: 68  YFWHDYWHPFGPLLPRLGPGAMINSGIPSNALVSSIVKGESWCWPLSTNSAILRVASNVE 127

Query: 402 SVAPNVNVEEMYVWLP-TNSTFSIQSTWNCFRGLIPKVDWARLV 274
            + PN + ++  +WLP T+  FS  ST +      P VDWA++V
Sbjct: 128 GLIPNSSCKDSCIWLPSTSGIFSTASTMDQIWIHHPVVDWAKIV 171


>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 637

 Score = 58.2 bits (139), Expect(2) = 1e-16
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
 Frame = -1

Query: 254 KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLCRS*VEDKNHLLFCCDLIALIW----- 90
           K +F+TWLA    LAT D+L +W    R +CV C   +E ++HL F C   + IW     
Sbjct: 291 KYSFVTWLAFHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSSQIWIALAK 350

Query: 89  -----KQVLRWSLVAVDLVD 45
                + V  WSL+   L+D
Sbjct: 351 GLLNGRNVSSWSLITPHLLD 370



 Score = 55.1 bits (131), Expect(2) = 1e-16
 Identities = 38/170 (22%), Positives = 77/170 (45%), Gaps = 8/170 (4%)
 Frame = -3

Query: 756 IVTKEESN*VKWIFFRL-KYKSFWAVRCSQDC-PWYWRKILKIRGRFFGLVKCCIGDGNK 583
           +V+ ++S  V+W++  L + ++FW+V+ +     W W+KILK R +     +  +  G  
Sbjct: 117 VVSAKDSLWVQWVYKNLIRKETFWSVKENTSLGSWLWKKILKQRDKARLFHQMEVRSGTT 176

Query: 582 VFLWYDNWHPLGSSYGRVSTRIIYDFASSLDAKVCSIISNGGWK*LXXXSNVVLEVIDNC 403
              W+D+W PLG  +  + +R   D   +  A V  ++     K     ++ + ++ ++ 
Sbjct: 177 TSFWHDHWSPLGRLHQHLGSRGTIDLGIATQATVAEVLDTHRRK--RHRADFLNQIENHI 234

Query: 402 SVAPNVNVEE--MYVWLPT----NSTFSIQSTWNCFRGLIPKVDWARLVW 271
            +      +E    +W         +FS   TW   R +  + +W R VW
Sbjct: 235 ELVRQARSQESDRSLWKQKEDSFKGSFSSPKTWQQIRTISNECEWYRGVW 284


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 57.8 bits (138), Expect(2) = 6e-16
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
 Frame = -1

Query: 254  KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLCRS*VEDKNHLLFCCDLIALIW----- 90
            K +F+TWLA    L T DK+ +W    R  CV C   +E ++HL F C   + +W     
Sbjct: 1215 KYSFVTWLAFHNRLTTSDKICKWNSGARYDCVFCGEELETRDHLFFSCPYSSHVWFSLTK 1274

Query: 89   -----KQVLRWSLVAVDLVD 45
                 + +L W+L+   L+D
Sbjct: 1275 GLLNGRNILNWNLITPHLLD 1294



 Score = 53.1 bits (126), Expect(2) = 6e-16
 Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 8/170 (4%)
 Frame = -3

Query: 756  IVTKEESN*VKWIFFRL-KYKSFWAVRCSQDC-PWYWRKILKIRGRFFGLVKCCIGDGNK 583
            I++  +S  VKW+   L + ++FW+V+ +     W WRKILK R +     +  +  G  
Sbjct: 1041 ILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTF 1100

Query: 582  VFLWYDNWHPLGSSYGRVSTRIIYDFASSLDAKVCSIISNGGWK*LXXXSNVVLEVIDNC 403
               W+D+W PLG  +  + +R   D     +A V  +++    K     ++ + ++    
Sbjct: 1101 TSFWHDHWCPLGRLHQHMGSRGTIDLGIPNNATVAEVMNTHRRK--RHRADFLNQIKSQI 1158

Query: 402  SVA--PNVNVEEMYVWLPT----NSTFSIQSTWNCFRGLIPKVDWARLVW 271
             +A        +  +W        S+FS   TW   R +  + DW R VW
Sbjct: 1159 ELARQDRSTDGDRSLWKQKEDTFKSSFSSSKTWQQIRSISLRCDWYRGVW 1208


>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1447

 Score = 61.6 bits (148), Expect(2) = 1e-15
 Identities = 48/173 (27%), Positives = 70/173 (40%), Gaps = 11/173 (6%)
 Frame = -3

Query: 756  IVTKEESN*VKWIFFRL-KYKSFWAVRCSQDC-PWYWRKILKIRGRFFGLVKCCIGDGNK 583
            I++  +S  VKWI   L K  SFW ++ S     W W+K+LK R       K  + +G +
Sbjct: 1118 ILSHGDSLWVKWIETNLLKNNSFWIIKSSTTMGSWMWKKLLKYREVAKTFSKIEVHNGQR 1177

Query: 582  VFLWYDNWHPLGSSYGRVSTRIIYDFASSLDAKVCSIISNGGWK*LXXXSNVV--LEVID 409
               WYD+W  +G     +  + I D     D  V  +     W       ++   L  ++
Sbjct: 1178 TSFWYDDWSCMGRIMNFIGDKGIIDLGIKRDKLVAEV-----WDTHRSRRHITDYLNQVE 1232

Query: 408  NCSVAPNVNVEEM---YVWLPTNS----TFSIQSTWNCFRGLIPKVDWARLVW 271
            N       N +E     VW   N      FS + TWN  R    KV W + VW
Sbjct: 1233 NVIATSKANRKEKADDVVWRGRNDIYKPQFSTRDTWNNIRTTATKVTWYKGVW 1285



 Score = 48.1 bits (113), Expect(2) = 1e-15
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = -1

Query: 254  KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLCRS*VEDKNHLLFCCDLIALIWKQVLR 75
            K +F  WLA    L+T D++  W+ +   SCV C    + ++HL F C   + +W    +
Sbjct: 1292 KFSFCVWLAALDRLSTGDRMANWKGVSSGSCVFCNHPTKSRDHLFFNCPYSSEVWTVTAK 1351

Query: 74   WSLVAVDLVDW 42
              L      DW
Sbjct: 1352 NILTTRFTTDW 1362


>ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 342

 Score = 59.3 bits (142), Expect(2) = 1e-15
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
 Frame = -3

Query: 699 KSFWAVRCSQDCPWY-WRKILKIRGRFFGLVKCC--IGDGNKVFLWYDNWHPLGSSYGRV 529
           K  W +       W  W +   ++GR    +     +G+G K  +W   W   G    + 
Sbjct: 57  KILWLLLVKSGSLWVSWVESYILKGRSLWEIDAGMEVGNGRKCRVWLVPWIQGGPIIQQF 116

Query: 528 STRIIYDFASSLDAKVCSIIS-NGGWK*LXXXSNVVLEVIDNC-SVAPNVNVEEMYVWLP 355
             R+IYD  S  D ++   +  NG W+      + ++++ D    V P+ +VE+ +VW+P
Sbjct: 117 GERVIYDAGSRWDVRLVDFMGRNGDWRWSLVSLD-LMDIWDRVQGVRPSPSVEDRWVWVP 175

Query: 354 -TNSTFSIQSTWNCFRGLIPKVDWARLVWQG 265
            +  +FSI S W   R    +V W+ L+W G
Sbjct: 176 GSRDSFSITSAWETIRPHSSRVGWSGLLWGG 206



 Score = 50.4 bits (119), Expect(2) = 1e-15
 Identities = 22/52 (42%), Positives = 33/52 (63%)
 Frame = -1

Query: 272 GKGHFSKVAFITWLAVRGGLATQDKLTQWRIIERMSCVLCRS*VEDKNHLLF 117
           G G+  K +F  WLA+R  L+T+D+L++W     +SC+LC    E +NHL F
Sbjct: 205 GGGNIPKHSFCAWLAIRDRLSTRDRLSRWDRSIPLSCLLCGGNYESRNHLFF 256


>ref|XP_004174148.1| PREDICTED: uncharacterized protein LOC101232502 [Cucumis sativus]
          Length = 191

 Score = 62.4 bits (150), Expect(2) = 1e-15
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
 Frame = -3

Query: 600 IGDGNKVFLWYDNWHPLGSSYGRVSTRIIYDFASSLDAKVCSII-SNGGWK*LXXXSNVV 424
           +G+G K  +W D W   G+   +   R+IYD  S  DA++   +  +G W+       V 
Sbjct: 3   VGNGKKCRVWLDPWIQGGAIIQQFGERVIYDAGSQRDARLVDFMGQDGDWR----CPLVS 58

Query: 423 LEVIDNC----SVAPNVNVEEMYVWLPTN-STFSIQSTWNCFRGLIPKVDWARLVWQG 265
           L+++D       V P+++VE+ +VW+P +  +FSI S W   R    +V W+ L+W G
Sbjct: 59  LDLMDIWDRIQGVWPSLSVEDRWVWVPGSLDSFSIASVWETIRPHSSRVGWSGLLWGG 116



 Score = 47.4 bits (111), Expect(2) = 1e-15
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = -1

Query: 272 GKGHFSKVAFITWLAVRGGLATQDKLTQWRIIERMSCVLCRS*VEDKNHLLF 117
           G G+  K +F  WLA+R  L T+D+L++W     +SC+LC    E ++HL F
Sbjct: 115 GGGNIPKHSFYAWLAIRDMLGTRDRLSRWDRSIPLSCMLCGRNFESRDHLFF 166


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score = 54.3 bits (129), Expect(2) = 2e-14
 Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 9/162 (5%)
 Frame = -3

Query: 729 VKWI-FFRLKYKSFWAVRCSQDC-PWYWRKILKIRGRFFGLVKCCIGDGNKVFLWYDNWH 556
           V+W+  + L+  SFW++  +     W W+KILK R    G VK  I +G+    W+DNW 
Sbjct: 158 VQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWS 217

Query: 555 PLGSSYGRVSTRIIYDFASSLDAKVCSIISNGGWK*LXXXSNVVLEVIDNCSVAPNVNV- 379
            +G        R   D   +L A V   + N   +      + +L + D  +   +  + 
Sbjct: 218 KIGRLIDVTGHRGCIDMGITLHASVAEAVVN--HRPRRHRHDTLLRIEDVIAEVRHQGLT 275

Query: 378 --EEMYVWLPTNS----TFSIQSTWNCFRGLIPKVDWARLVW 271
             E+   W          F+ + TW   R    KV+W + VW
Sbjct: 276 SGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVNWYKGVW 317



 Score = 51.6 bits (122), Expect(2) = 2e-14
 Identities = 24/73 (32%), Positives = 36/73 (49%)
 Frame = -1

Query: 254 KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLCRS*VEDKNHLLFCCDLIALIWKQVLR 75
           K + + W+A++  L T D++  W      SCVLC   VE ++HL F C   A +W  + R
Sbjct: 324 KYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEVWSTLTR 383

Query: 74  WSLVAVDLVDWDA 36
             L       W+A
Sbjct: 384 KLLSQHFTNRWEA 396


>ref|XP_004173049.1| PREDICTED: putative ribonuclease H protein At1g65750-like, partial
           [Cucumis sativus]
          Length = 647

 Score = 61.6 bits (148), Expect(2) = 3e-14
 Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 5/169 (2%)
 Frame = -3

Query: 756 IVTKEESN*VKWI-FFRLKYKSFWAVRCSQDCPWYWRKILKIRGRFFGLVKCCIGDGNKV 580
           ++ K  S  V W+  + LK +S W +       W +R IL+ R      V+  +G+  K 
Sbjct: 346 LLVKSGSLWVAWVEAYILKGRSLWEIDAGAGRSWCFRAILRKRDILKAHVEMKLGNVRKC 405

Query: 579 FLWYDNWHPLGSSYGRVSTRIIYDFASSLDAKVCSIISNGG---WK*LXXXSNVVLEVID 409
            +  D W   G        R+IYD  S  DA++   +   G   W  +      + ++I 
Sbjct: 406 RMLLDAWIQGGMIIQLFGERVIYDAGSRRDARLMDFMGGDGDWRWSLVSLDLMDIWDMIQ 465

Query: 408 NCSVAPNVNVEEMYVWLPTN-STFSIQSTWNCFRGLIPKVDWARLVWQG 265
              ++P  +V++ +VW+     +FSI S W   R    +V W+ L+W G
Sbjct: 466 GVRLSP--SVDDRWVWVSGRLDSFSIVSAWETIRPNSSRVGWSGLLWGG 512



 Score = 43.5 bits (101), Expect(2) = 3e-14
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = -1

Query: 254 KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLCRS*VEDKNHLL 120
           +V F  WLA+R  L T+D+L+ W     +SC+LC    E ++HLL
Sbjct: 519 RVYFCAWLAIRDRLGTRDRLSWWDRFIPLSCMLCGGNYESRDHLL 563


>ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcriptase)-related protein
           [Arabidopsis thaliana] gi|332195602|gb|AEE33723.1|
           RNA-directed DNA polymerase (reverse
           transcriptase)-related protein [Arabidopsis thaliana]
          Length = 289

 Score = 54.7 bits (130), Expect(2) = 3e-14
 Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 12/126 (9%)
 Frame = -3

Query: 612 VKCCIGDGNKVFLWYDNWHPLG------SSYGRVSTRIIYDFASSLDAKVCSIISNGGWK 451
           VKC +G+G     W+D+W  LG        YG  S RI       L+A+V   +   GWK
Sbjct: 13  VKCNLGNGRIAHFWHDSWTSLGPLIKVMGDYGSRSLRI------PLNARVVEALGVNGWK 66

Query: 450 *LXXXSNVVLEVIDNCSVAPN---VNVEEMYVWLPTNST---FSIQSTWNCFRGLIPKVD 289
                S     + D+ S         +E+ + W+        FS   TW+  R   P++D
Sbjct: 67  LPLSRSAPAQAIHDHISTITTPSPATIEDSFDWVVGGVVCQGFSSARTWDAIRPRAPELD 126

Query: 288 WARLVW 271
           WA+ VW
Sbjct: 127 WAKAVW 132



 Score = 50.4 bits (119), Expect(2) = 3e-14
 Identities = 22/61 (36%), Positives = 32/61 (52%)
 Frame = -1

Query: 269 KGHFSKVAFITWLAVRGGLATQDKLTQWRIIERMSCVLCRS*VEDKNHLLFCCDLIALIW 90
           KG   K AF  W++    L T+ +L  W  I+   C LC    E ++HLLF C+  A +W
Sbjct: 134 KGAVPKHAFNMWISQLDRLPTRQRLASWGHIQSFDCCLCTIETESRDHLLFSCEFAAQVW 193

Query: 89  K 87
           +
Sbjct: 194 R 194


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score = 70.5 bits (171), Expect(2) = 4e-14
 Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 6/151 (3%)
 Frame = -3

Query: 705  KYKSFWAVRCSQDCPWYWRKILKIRGRFFGLVKCCIGDGNKVFLWYDNWHPLGSSYGRVS 526
            K  SFW         W W+ +L++R      ++C +G+G     W+DNW P G     + 
Sbjct: 803  KSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIRCNVGNGRDASFWFDNWTPFGPLIKFLG 862

Query: 525  TRIIYDFASSLDAKVCSIISNGGWK*LXXXSNVVLEV---IDNCSVAPNVNVEEMYVWLP 355
                 D    L+AK+  + ++ GW      S+  L +   + N S+  +    + Y W+ 
Sbjct: 863  NEGPRDLRVHLNAKISDVCTSEGWSIADPRSDQALSLHTHLTNISMPSDAQDLDSYDWVV 922

Query: 354  TNST---FSIQSTWNCFRGLIPKVDWARLVW 271
             N     FS  +TW+  R     V WAR VW
Sbjct: 923  DNKVCQGFSAAATWSALRPSSAPVPWARAVW 953



 Score = 34.3 bits (77), Expect(2) = 4e-14
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -1

Query: 269  KGHFSKVAFITWLAVRGGLATQDKLTQWRIIERMSCVLCRS*VEDKNHLLFCCD 108
            KG   K AF  W A    L T+ +L  W +    +C LC    E ++HL   CD
Sbjct: 955  KGATPKHAFHLWTAHLDRLPTKVRLASWGMQIDTTCGLCSLHPETRDHLFLSCD 1008


>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score = 61.2 bits (147), Expect(2) = 7e-14
 Identities = 53/170 (31%), Positives = 74/170 (43%), Gaps = 8/170 (4%)
 Frame = -3

Query: 756 IVTKEESN*VKWIFFRLKYKSF-WAVRCSQDC-PWYWRKILKIRGRFFGLVKCCIGDGNK 583
           I++  +S  VKWI   L  K F WAVR +     W WRKILK R     L K  I +G +
Sbjct: 224 IISHADSLWVKWIQSSLLKKVFFWAVRENTSLGSWMWRKILKFRDIARTLCKVEINNGAQ 283

Query: 582 VFLWYDNWHPLGSSYGRVSTRIIYDFASSLDAKVCSIISNGGWK*LXXXSNVVLEVIDNC 403
              WYD+W  LG        R   D   +  A V  + + G  +     +N +  V +  
Sbjct: 284 TSFWYDDWSDLGRLIESAGDRGAIDLGINKHATV--VEAWGNRRRRRHRANFLNRVEERL 341

Query: 402 SVAPNV--NVEEMYVWLPT----NSTFSIQSTWNCFRGLIPKVDWARLVW 271
            ++ N     E+  +W        S FS + TWN  R +  KV W + VW
Sbjct: 342 VLSWNSRNQAEDCALWKGKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVW 391



 Score = 42.7 bits (99), Expect(2) = 7e-14
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = -1

Query: 254 KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLCRS*VEDKNHL 123
           K AF  WLAV   L+T D++T W +    +C+LC + +E ++HL
Sbjct: 398 KHAFCMWLAVHNRLSTGDRMTLWNMGVDATCILCNNALESRDHL 441


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 52.8 bits (125), Expect(2) = 2e-13
 Identities = 22/77 (28%), Positives = 41/77 (53%)
 Frame = -1

Query: 254  KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLCRS*VEDKNHLLFCCDLIALIWKQVLR 75
            K +F+ WL V+  L+T D++  W   + ++C LC +  E ++HL F C   + +W+ + +
Sbjct: 1366 KYSFLLWLTVQNRLSTGDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYVWEALTQ 1425

Query: 74   WSLVAVDLVDWDATFVV 24
              L      DW+  F +
Sbjct: 1426 RLLSTNYSRDWNRLFTL 1442



 Score = 49.7 bits (117), Expect(2) = 2e-13
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 7/169 (4%)
 Frame = -3

Query: 756  IVTKEESN*VKWIF-FRLKYKSFWAVRCSQDC-PWYWRKILKIRGRFFGLVKCCIGDGNK 583
            +++ + S  V WI+ F ++  +FW+         W W+K+LK R     + K  + +G+ 
Sbjct: 1191 LLSTQPSLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVEVRNGSS 1250

Query: 582  VFLWYDNWHPLGSSYGRVSTRIIYDFASSLDAKVCSII-SNGGWK*LXXXSNVVLEVIDN 406
               WYD+W  LG       TR + D    L+  + +++ ++   +      N +   I  
Sbjct: 1251 TSFWYDHWSHLGRLLDITGTRRVIDLGIPLETNLETVLRTHQHRQHRAAIYNRINAEIQR 1310

Query: 405  CSVAPNVNVEEMYVWLPT----NSTFSIQSTWNCFRGLIPKVDWARLVW 271
                      ++ +W       N  F  + TWN  R   P+ +W + VW
Sbjct: 1311 LQQQEREAGPDISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVW 1359


>dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana] gi|93007380|gb|ABE97193.1|
           hypothetical protein At5g13655 [Arabidopsis thaliana]
          Length = 385

 Score = 53.5 bits (127), Expect(2) = 4e-13
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 6/152 (3%)
 Frame = -3

Query: 708 LKYKSFWAVR-CSQDCPWYWRKILKIRGRFFGLVKCCIGDGNKVFLWYDNWHPLGSSYGR 532
           L+  S WAV+  S    W W+K+LK R +     K  + +G     WYD+W  LG  Y +
Sbjct: 70  LRGGSLWAVKETSSRGSWIWKKLLKYRDKAKCFHKVDVRNGESTSFWYDSWSSLGCLYDK 129

Query: 531 VSTRIIYDFASSLDAKVCS-IISNGGWK*LXXXSNVVLEVIDNCSVAPNVNVEEMYVWLP 355
              R   D     D+ + S I++    K      N V   I     +  V   ++ +W  
Sbjct: 130 FGERGCIDMGIPKDSTLSSAIMTTRRRKHRQPLLNAVETEIQKQKQSRIVTERDVALWKG 189

Query: 354 T----NSTFSIQSTWNCFRGLIPKVDWARLVW 271
                + TF  + TW+  R   P++   R +W
Sbjct: 190 KEDGFHPTFLSKETWSQIRNTQPEMQGYRGIW 221



 Score = 47.8 bits (112), Expect(2) = 4e-13
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = -1

Query: 254 KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLCRS*VEDKNHLLFCCDLIALIWKQVLR 75
           K A +TWL VR  +AT +K+  W      SC+ C++  E + HL F C     +W  +++
Sbjct: 228 KYALLTWLMVRNRIATGEKMGLWNQNTDTSCIFCKNPNETREHLFFQCVYTRKVWNGLIK 287

Query: 74  WSLV 63
             L+
Sbjct: 288 GLLL 291