BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia24_contig00016522
         (1540 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]              176   6e-83
ref|XP_004295686.1| PREDICTED: uncharacterized mitochondrial pro...   155   8e-74
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  152   3e-70
gb|AAB82754.1| retrofit [Oryza longistaminata]                        147   7e-69
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   149   8e-68
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]                  147   3e-67
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   150   3e-67
gb|ABA95366.1| retrotransposon protein, putative, Ty1-copia subc...   144   3e-67
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   151   8e-67
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   148   1e-66
gb|EEC76475.1| hypothetical protein OsI_14210 [Oryza sativa Indi...   148   1e-66
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   143   2e-66
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc...   150   4e-66
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]   142   7e-66
emb|CAN68364.1| hypothetical protein VITISV_021899 [Vitis vinifera]   150   7e-66
gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sat...   142   2e-65
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa...   149   2e-65
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   148   3e-65
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   140   5e-65
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   141   1e-64

>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score =  176 bits (445), Expect(2) = 6e-83
 Identities = 91/155 (58%), Positives = 107/155 (69%), Gaps = 15/155 (9%)
 Frame = +1

Query: 406  DADYAGNPDDRHSTGGYAIYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYTTAELSWFRS 585
            DADYAG+PDDRHSTGG+           S+KK +TVSRSS E EYRQL+YT AELSW RS
Sbjct: 1230 DADYAGDPDDRHSTGGFC----------SSKKHKTVSRSSAEAEYRQLAYTAAELSWLRS 1279

Query: 586  LFKDLGIILPALVIWCDNVSSLALATNPVYHTRTKHLEVDYHYI---------------T 720
            LF+DL + L    IWCDN+SS++LA+NPV+H+RTKH+EVDYHY+               T
Sbjct: 1280 LFRDLNVFLSCPRIWCDNISSISLASNPVFHSRTKHIEVDYHYVRDKVVRQELAVSYVST 1339

Query: 721  KDQVADIFTKGLSRQRFQMLQSKLMVLLLPIRLWG 825
             DQ ADIFTKGLS QRFQ L SKL V   P+ L G
Sbjct: 1340 ADQTADIFTKGLSTQRFQFLASKLPVRARPLSLRG 1374



 Score =  160 bits (406), Expect(2) = 6e-83
 Identities = 75/131 (57%), Positives = 97/131 (74%)
 Frame = +2

Query: 11   VHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPLSDA 190
            VHYFLGI+      H+ + Q KYI++LL+K     S+P  TPV+SG+KLS++DG  L D 
Sbjct: 1100 VHYFLGIETVYNGDHLHLTQHKYIVDLLKKTKLHDSRPYPTPVLSGKKLSVYDGVKLEDP 1159

Query: 191  TQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNHSLVYK 370
            +++R +VGALQY+T++RPDI YAVNQVCQFMHSPT  HW  VKRIL +LK ++NH LVY+
Sbjct: 1160 SEYRSIVGALQYLTLTRPDICYAVNQVCQFMHSPTNVHWVAVKRILRYLKYTLNHGLVYQ 1219

Query: 371  SGSTHLHAYCD 403
             GS  L AY D
Sbjct: 1220 PGSHKLVAYSD 1230


>ref|XP_004295686.1| PREDICTED: uncharacterized mitochondrial protein AtMg00810-like
           [Fragaria vesca subsp. vesca]
          Length = 261

 Score =  155 bits (391), Expect(2) = 8e-74
 Identities = 73/134 (54%), Positives = 95/134 (70%)
 Frame = +2

Query: 2   LVHVHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPL 181
           L  +HYFLGI+ T       + Q+KYI++LL +   L + P +TP  +GQKLS+H G  L
Sbjct: 7   LGRIHYFLGIEATYDGPSPYLTQKKYIVDLLTRTKMLDANPCATPAATGQKLSLHSGKKL 66

Query: 182 SDATQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNHSL 361
           SD T++R VVGALQY+T++RPDISY+VNQVC+FMHSPTT HW  VK IL +LK S+NH L
Sbjct: 67  SDPTEYRSVVGALQYLTLTRPDISYSVNQVCKFMHSPTTIHWIAVKPILRYLKFSLNHGL 126

Query: 362 VYKSGSTHLHAYCD 403
            Y+  S  + AY D
Sbjct: 127 KYQPSSLFISAYFD 140



 Score =  151 bits (381), Expect(2) = 8e-74
 Identities = 68/109 (62%), Positives = 85/109 (77%)
 Frame = +1

Query: 406 DADYAGNPDDRHSTGGYAIYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYTTAELSWFRS 585
           DADYAG+PD+R STGGY +YL PNL+SWS K  RTVSRS  E EYRQL++T AE+SW RS
Sbjct: 140 DADYAGDPDNRQSTGGYCVYLGPNLISWSYKTHRTVSRSCAEAEYRQLAFTAAEISWLRS 199

Query: 586 LFKDLGIILPALVIWCDNVSSLALATNPVYHTRTKHLEVDYHYITKDQV 732
           +F DL + L    IWCD +S++A+A+NPV+H RTKH+EVDYHY  +  V
Sbjct: 200 MFCDLSLFLQCPRIWCDYLSAIAIASNPVFHARTKHVEVDYHYFREKVV 248


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  152 bits (384), Expect(2) = 3e-70
 Identities = 68/134 (50%), Positives = 104/134 (77%), Gaps = 3/134 (2%)
 Frame = +2

Query: 11   VHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPL--S 184
            +HYFLGI++T+ P+ +V+ QEKY  +LL++++  + KP+STP+   +KL++++G PL  +
Sbjct: 1154 LHYFLGIEVTKVPNGIVLTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPN 1213

Query: 185  DATQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNHSL- 361
            DATQ+R +VGALQY+T++RPDI+Y+VN+VCQF+H+PTT HW  VKRIL +L    +  L 
Sbjct: 1214 DATQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTDHWTAVKRILRYLNQCTSLGLN 1273

Query: 362  VYKSGSTHLHAYCD 403
            ++KS ST +H Y D
Sbjct: 1274 IHKSASTLVHGYSD 1287



 Score =  142 bits (357), Expect(2) = 3e-70
 Identities = 73/134 (54%), Positives = 94/134 (70%), Gaps = 16/134 (11%)
 Frame = +1

Query: 406  DADYAGNPDDRHSTGGYAIYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYTTAELSWFRS 585
            DAD+AG+ DDR STGG+A++L  NLVSWSA+K  TVSRSSTE EY+ ++ TTAEL W ++
Sbjct: 1287 DADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQT 1346

Query: 586  LFKDLGIILP-ALVIWCDNVSSLALATNPVYHTRTKHLEVDYHYITK------------- 723
            L ++LGI  P A  IWCDN+ +  L+ NPV+H RTKH+EVDYH++ +             
Sbjct: 1347 LLRELGIDSPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVP 1406

Query: 724  --DQVADIFTKGLS 759
              DQVAD FTK LS
Sbjct: 1407 SGDQVADGFTKALS 1420


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  147 bits (370), Expect(2) = 7e-69
 Identities = 66/134 (49%), Positives = 103/134 (76%), Gaps = 3/134 (2%)
 Frame = +2

Query: 11   VHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPL--S 184
            +HYFLGI++T+  + +++ QEKY  +LL++++  + KP+STP+   +KL++++G PL  +
Sbjct: 1163 LHYFLGIEVTKVSNGVILTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPN 1222

Query: 185  DATQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNHSL- 361
            DA Q+R +VGALQY+T++RPDI+Y+VN+VCQF+H+PTTSHW  VKRIL +L    +  L 
Sbjct: 1223 DAIQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLNQCTSLGLH 1282

Query: 362  VYKSGSTHLHAYCD 403
            ++KS ST +H Y D
Sbjct: 1283 IHKSASTLVHGYSD 1296



 Score =  142 bits (359), Expect(2) = 7e-69
 Identities = 74/134 (55%), Positives = 94/134 (70%), Gaps = 16/134 (11%)
 Frame = +1

Query: 406  DADYAGNPDDRHSTGGYAIYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYTTAELSWFRS 585
            DAD+AG+ DDR STGG+A++L  NLVSWSA+K  TVSRSSTE EY+ ++ TTAEL W ++
Sbjct: 1296 DADWAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQT 1355

Query: 586  LFKDLGIILP-ALVIWCDNVSSLALATNPVYHTRTKHLEVDYHYITK------------- 723
            L K+LGI  P A  IWCDN+ +  L+ NPV+H RTKH+EVDYH++ +             
Sbjct: 1356 LLKELGIESPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVP 1415

Query: 724  --DQVADIFTKGLS 759
              DQVAD FTK LS
Sbjct: 1416 SGDQVADGFTKALS 1429


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score =  149 bits (375), Expect(2) = 8e-68
 Identities = 67/134 (50%), Positives = 104/134 (77%), Gaps = 3/134 (2%)
 Frame = +2

Query: 11   VHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPL--S 184
            +HYFLGI++T+  + +++ QEKY  ++L++++  + KP+STP+   +KL++++G PL  +
Sbjct: 1166 LHYFLGIEVTKVSNGVILTQEKYANDMLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPN 1225

Query: 185  DATQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNHSL- 361
            DATQ+R +VGALQY+T++RPDI+Y+VN+VCQF+H+PTTSHW  VKRIL +L    +  L 
Sbjct: 1226 DATQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLNQCTSLGLH 1285

Query: 362  VYKSGSTHLHAYCD 403
            V+KS ST +H Y D
Sbjct: 1286 VHKSASTLVHGYSD 1299



 Score =  137 bits (345), Expect(2) = 8e-68
 Identities = 72/145 (49%), Positives = 96/145 (66%), Gaps = 16/145 (11%)
 Frame = +1

Query: 406  DADYAGNPDDRHSTGGYAIYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYTTAELSWFRS 585
            DAD AG+ DDR STGG+A++L  NLVSWSA+K  TVSRSSTE EY+ ++ TTAEL W ++
Sbjct: 1299 DADGAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQT 1358

Query: 586  LFKDLGIILP-ALVIWCDNVSSLALATNPVYHTRTKHLEVDYHYITK------------- 723
            + K+LGI  P A  IWCDN+ +  L+ NPV+H +TKH+ VDYH++ +             
Sbjct: 1359 VLKELGIESPKAAKIWCDNLGAKYLSANPVFHAKTKHIHVDYHFVRERVSQKLLEIDFVP 1418

Query: 724  --DQVADIFTKGLSRQRFQMLQSKL 792
              DQVAD FTK LS +  +  +  L
Sbjct: 1419 SGDQVADGFTKALSARLLENFKHNL 1443


>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
          Length = 1448

 Score =  147 bits (370), Expect(2) = 3e-67
 Identities = 66/134 (49%), Positives = 103/134 (76%), Gaps = 3/134 (2%)
 Frame = +2

Query: 11   VHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPL--S 184
            +HYFLGI++T+  + +++ QEKY  ++L++++  +  P+STP+   +KL++++G PL  +
Sbjct: 1166 LHYFLGIEVTKVSNGVILTQEKYANDMLKRVNMSNCTPVSTPLSVSEKLTLYEGSPLGPN 1225

Query: 185  DATQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNHSL- 361
            DATQ+R +VGALQY+T++RPDI+Y+VN+VCQF+H+PTTSHW  VKRIL +L    +  L 
Sbjct: 1226 DATQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLNQCTSPGLH 1285

Query: 362  VYKSGSTHLHAYCD 403
            V+KS ST +H Y D
Sbjct: 1286 VHKSASTLVHGYSD 1299



 Score =  137 bits (345), Expect(2) = 3e-67
 Identities = 72/145 (49%), Positives = 96/145 (66%), Gaps = 16/145 (11%)
 Frame = +1

Query: 406  DADYAGNPDDRHSTGGYAIYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYTTAELSWFRS 585
            DAD AG+ DDR STGG+A++L  NLVSWSA+K  TVSRSSTE EY+ ++ TTAEL W ++
Sbjct: 1299 DADGAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQT 1358

Query: 586  LFKDLGIILP-ALVIWCDNVSSLALATNPVYHTRTKHLEVDYHYITK------------- 723
            + K+LGI  P A  IWCDN+ +  L+ NPV+H +TKH+ VDYH++ +             
Sbjct: 1359 VLKELGIESPKAAKIWCDNLGAKYLSANPVFHAKTKHIHVDYHFVRERVSQKLLEIDFVP 1418

Query: 724  --DQVADIFTKGLSRQRFQMLQSKL 792
              DQVAD FTK LS +  +  +  L
Sbjct: 1419 SGDQVADGFTKALSARLLENFKHNL 1443


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
            gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
            Japonica Group]
          Length = 821

 Score =  150 bits (379), Expect(2) = 3e-67
 Identities = 72/145 (49%), Positives = 102/145 (70%), Gaps = 16/145 (11%)
 Frame = +1

Query: 406  DADYAGNPDDRHSTGGYAIYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYTTAELSWFRS 585
            DAD+AG+PDDR STGG+A++L PNLVSWSA+K  TVSRSSTE EY+ L+  TAE+ W ++
Sbjct: 666  DADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSSTEAEYKALANATAEIMWVQT 725

Query: 586  LFKDLGIILP-ALVIWCDNVSSLALATNPVYHTRTKHLEVDYHYI--------------- 717
            L ++LG+  P A  +WCDN+ +  L+ NP++H RTKH+EVD+H++               
Sbjct: 726  LLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDFHFVRERVARKLLEIAYIS 785

Query: 718  TKDQVADIFTKGLSRQRFQMLQSKL 792
            TKDQVAD FTK +  ++ +M ++ L
Sbjct: 786  TKDQVADGFTKAIPVRQMEMFKNNL 810



 Score =  134 bits (336), Expect(2) = 3e-67
 Identities = 58/121 (47%), Positives = 94/121 (77%), Gaps = 2/121 (1%)
 Frame = +2

Query: 11  VHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPLS-- 184
           +HYFLGI++ +    ++++QEKY  +LL+++     KP+STP+ + +KLS+++G  L   
Sbjct: 533 LHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQ 592

Query: 185 DATQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNHSLV 364
           D+TQ+R VVGALQY+T++RPDIS+++N+VCQF+H+PTT+HW  VKRIL ++K +V+  L 
Sbjct: 593 DSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLK 652

Query: 365 Y 367
           +
Sbjct: 653 F 653


>gb|ABA95366.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 552

 Score =  144 bits (364), Expect(2) = 3e-67
 Identities = 67/137 (48%), Positives = 100/137 (72%), Gaps = 3/137 (2%)
 Frame = +2

Query: 2   LVHVHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPL 181
           L  +HYFLGI++ +T   +++ QEKY  ++L+++     KP+STP+++ +KL +H+G  L
Sbjct: 266 LEELHYFLGIEVNKTSDGIMLTQEKYASDILRRVGMQDCKPVSTPLLASEKLLVHEGTLL 325

Query: 182 S--DATQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNH 355
              D TQ+R +VGAL Y+T++RPDIS++VN+VCQF+HSPTT HW VVKRIL +LK +VN 
Sbjct: 326 GQKDTTQYRSIVGALPYLTLTRPDISFSVNKVCQFLHSPTTVHWTVVKRILRYLKYTVNC 385

Query: 356 SL-VYKSGSTHLHAYCD 403
            L + KS S  +  +CD
Sbjct: 386 GLRISKSSSLLVSGFCD 402



 Score =  139 bits (351), Expect(2) = 3e-67
 Identities = 71/148 (47%), Positives = 99/148 (66%), Gaps = 16/148 (10%)
 Frame = +1

Query: 403 CDADYAGNPDDRHSTGGYAIYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYTTAELSWFR 582
           CDAD+AG  DDR STGG+A++L  NLVSWSA+K  TVSRSSTE EY+ L+ T AE+ W +
Sbjct: 401 CDADWAGCLDDRRSTGGFAVFLGSNLVSWSARKQTTVSRSSTEAEYKALADTKAEIMWLQ 460

Query: 583 SLFKDLGIILP-ALVIWCDNVSSLALATNPVYHTRTKHLEVDYHYI-------------- 717
           +L  ++GI  P A  +WCDNV +  L+ NP++H RTKH+EVDY+ +              
Sbjct: 461 TLLYEIGIETPKAAKVWCDNVGAKYLSVNPMFHARTKHIEVDYYIVRERVSRKLLEIEYI 520

Query: 718 -TKDQVADIFTKGLSRQRFQMLQSKLMV 798
            +KDQ+A  FTK L+ + F++ +S L +
Sbjct: 521 SSKDQIAYGFTKSLTVRPFEVFKSNLNI 548


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  151 bits (382), Expect(2) = 8e-67
 Identities = 74/145 (51%), Positives = 100/145 (68%), Gaps = 16/145 (11%)
 Frame = +1

Query: 406  DADYAGNPDDRHSTGGYAIYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYTTAELSWFRS 585
            DAD+AG  DDRHSTGG+A+++ PNLVSWSA+K  TVSRSSTE EY+ L+  TAE+ W ++
Sbjct: 1281 DADWAGCLDDRHSTGGFAVFIGPNLVSWSARKQATVSRSSTEAEYKALANVTAEIMWIQT 1340

Query: 586  LFKDLGIILPALV-IWCDNVSSLALATNPVYHTRTKHLEVDYHYI--------------- 717
            L  +LGI  P +  +WCDN+ +  +  NPV+H RTKH+EVDYH++               
Sbjct: 1341 LLHELGIQAPKIAKVWCDNIGAKYMTANPVFHARTKHIEVDYHFVRERVARKFLQVEYIS 1400

Query: 718  TKDQVADIFTKGLSRQRFQMLQSKL 792
            TKDQVAD FTK LS ++ +M ++ L
Sbjct: 1401 TKDQVADGFTKTLSVRQLEMFRNNL 1425



 Score =  131 bits (329), Expect(2) = 8e-67
 Identities = 60/137 (43%), Positives = 98/137 (71%), Gaps = 3/137 (2%)
 Frame = +2

Query: 2    LVHVHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPL 181
            L  +HYFLGI++    + +V+ QEKY +++L++++    K ++TP+   +KLS H+G+P 
Sbjct: 1145 LGRLHYFLGIEVKEVNNGIVLTQEKYAMDVLKRVNMSDCKAVNTPLSISEKLSAHEGNPF 1204

Query: 182  S--DATQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNH 355
               D+T++R +VGALQY+T++RPD+S++VN+VCQ++H+PTT HW   KRIL +LK +V  
Sbjct: 1205 GPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQYLHAPTTKHWAAAKRILRYLKHTVKL 1264

Query: 356  SL-VYKSGSTHLHAYCD 403
             L + KS S  + A+ D
Sbjct: 1265 GLKISKSNSLLVSAFSD 1281


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  148 bits (373), Expect(2) = 1e-66
 Identities = 71/145 (48%), Positives = 101/145 (69%), Gaps = 16/145 (11%)
 Frame = +1

Query: 406  DADYAGNPDDRHSTGGYAIYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYTTAELSWFRS 585
            DAD+AG+PDDR STGG+A++L PNLVSWSA+K  TVSRSS E EY+ L+  TAE+ W ++
Sbjct: 1244 DADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSSIEAEYKALANATAEIMWVQT 1303

Query: 586  LFKDLGIILP-ALVIWCDNVSSLALATNPVYHTRTKHLEVDYHYI--------------- 717
            L ++LG+  P A  +WCDN+ +  L+ NP++H RTKH+EVD+H++               
Sbjct: 1304 LLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDFHFVRERVARKLLEIAYIS 1363

Query: 718  TKDQVADIFTKGLSRQRFQMLQSKL 792
            TKDQVAD FTK +  ++ +M ++ L
Sbjct: 1364 TKDQVADGFTKAIPVRQMEMFKNNL 1388



 Score =  134 bits (336), Expect(2) = 1e-66
 Identities = 58/121 (47%), Positives = 94/121 (77%), Gaps = 2/121 (1%)
 Frame = +2

Query: 11   VHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPLS-- 184
            +HYFLGI++ +    ++++QEKY  +LL+++     KP+STP+ + +KLS+++G  L   
Sbjct: 1111 LHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQ 1170

Query: 185  DATQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNHSLV 364
            D+TQ+R VVGALQY+T++RPDIS+++N+VCQF+H+PTT+HW  VKRIL ++K +V+  L 
Sbjct: 1171 DSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLK 1230

Query: 365  Y 367
            +
Sbjct: 1231 F 1231


>gb|EEC76475.1| hypothetical protein OsI_14210 [Oryza sativa Indica Group]
          Length = 391

 Score =  148 bits (373), Expect(2) = 1e-66
 Identities = 71/145 (48%), Positives = 101/145 (69%), Gaps = 16/145 (11%)
 Frame = +1

Query: 406 DADYAGNPDDRHSTGGYAIYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYTTAELSWFRS 585
           DAD+AG+PDDR STGG+A++L PNLVSWSA+K  TVSRSS E EY+ L+  TAE+ W ++
Sbjct: 236 DADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSSIEAEYKALANATAEIMWVQT 295

Query: 586 LFKDLGIILP-ALVIWCDNVSSLALATNPVYHTRTKHLEVDYHYI--------------- 717
           L ++LG+  P A  +WCDN+ +  L+ NP++H RTKH+EVD+H++               
Sbjct: 296 LLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDFHFVRERVARKLLEIAYIS 355

Query: 718 TKDQVADIFTKGLSRQRFQMLQSKL 792
           TKDQVAD FTK +  ++ +M ++ L
Sbjct: 356 TKDQVADGFTKAIPVRQMEMFKNNL 380



 Score =  134 bits (336), Expect(2) = 1e-66
 Identities = 58/121 (47%), Positives = 94/121 (77%), Gaps = 2/121 (1%)
 Frame = +2

Query: 11  VHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPLS-- 184
           +HYFLGI++ +    ++++QEKY  +LL+++     KP+STP+ + +KLS+++G  L   
Sbjct: 103 LHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQ 162

Query: 185 DATQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNHSLV 364
           D+TQ+R VVGALQY+T++RPDIS+++N+VCQF+H+PTT+HW  VKRIL ++K +V+  L 
Sbjct: 163 DSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLK 222

Query: 365 Y 367
           +
Sbjct: 223 F 223


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score =  143 bits (361), Expect(2) = 2e-66
 Identities = 68/134 (50%), Positives = 100/134 (74%), Gaps = 3/134 (2%)
 Frame = +2

Query: 11   VHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPL--S 184
            +HYFLGI++T+    +V+ Q+KY+ +LL++++    KP+STP+ + +KLSI++GDPL  +
Sbjct: 965  LHYFLGIEVTKVSGGIVLTQDKYVNDLLRRVNMFDCKPVSTPLSTSEKLSINEGDPLGPN 1024

Query: 185  DATQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNHSL- 361
            DAT +R VVGALQY+T++RPDI++ VN+VCQF+H+PTT HW  VKRIL +LK      L 
Sbjct: 1025 DATHYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTHHWAAVKRILRYLKQCTRLGLK 1084

Query: 362  VYKSGSTHLHAYCD 403
            + KS S  + AY D
Sbjct: 1085 LSKSRSMLVSAYSD 1098



 Score =  137 bits (346), Expect(2) = 2e-66
 Identities = 70/145 (48%), Positives = 97/145 (66%), Gaps = 16/145 (11%)
 Frame = +1

Query: 406  DADYAGNPDDRHSTGGYAIYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYTTAELSWFRS 585
            DAD+AG+ DDR STGG+A++L  NLVSWSA+K  TVSRSSTE EY+ L+  TAE+ W ++
Sbjct: 1098 DADWAGSLDDRRSTGGFAVFLGDNLVSWSARKQATVSRSSTESEYKALANATAEIMWVQT 1157

Query: 586  LFKDLGIILPALV-IWCDNVSSLALATNPVYHTRTKHLEVDYHYI--------------- 717
            L  +L +  P++  +WCDN+ +  L+ NPV+H RTKH+EVDYH++               
Sbjct: 1158 LLAELQVESPSMAKLWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSRKLLEIDFVP 1217

Query: 718  TKDQVADIFTKGLSRQRFQMLQSKL 792
            T DQVAD FTK LS ++ +  +  L
Sbjct: 1218 TGDQVADGFTKALSVRQLENFKYNL 1242


>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 900

 Score =  150 bits (379), Expect(2) = 4e-66
 Identities = 69/134 (51%), Positives = 104/134 (77%), Gaps = 3/134 (2%)
 Frame = +2

Query: 11   VHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPL--S 184
            +HYFLGI++ RTP  ++++QE+Y  ELL++++    KP+STP+ + +KLS+  GD L  S
Sbjct: 610  LHYFLGIEVKRTPQTLLLSQERYTTELLERVNMTSCKPVSTPLSTAEKLSVEIGDELGPS 669

Query: 185  DATQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNHSL- 361
            D TQ+R +VGALQY+T++RPDISY+VN+VCQF+ +PTT+HW+ VKRIL +LKG+++  L 
Sbjct: 670  DVTQYRSIVGALQYLTLTRPDISYSVNKVCQFLQTPTTAHWSAVKRILRYLKGTLDLGLK 729

Query: 362  VYKSGSTHLHAYCD 403
            + KS S  + A+ D
Sbjct: 730  IVKSSSNLVSAFSD 743



 Score =  130 bits (326), Expect(2) = 4e-66
 Identities = 68/146 (46%), Positives = 92/146 (63%), Gaps = 25/146 (17%)
 Frame = +1

Query: 406  DADYAGNPDDRHSTGGYA---------IYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYT 558
            DAD+AG+ DDR STGG+A         ++   NL+SWSA+K  TVSRSSTE EY+ L+  
Sbjct: 743  DADWAGSVDDRRSTGGFADRRSTGGFAVFFGDNLISWSARKQATVSRSSTEAEYKALANA 802

Query: 559  TAELSWFRSLFKDLGIILP-ALVIWCDNVSSLALATNPVYHTRTKHLEVDYHYI------ 717
             AE+ W R L  +LGI+ P A  +WCDN+ +  +  NPV+H RTKH+EVDYH++      
Sbjct: 803  AAEIIWVRKLLTELGILHPNAARLWCDNLGATYMTANPVFHARTKHIEVDYHFVREQVAQ 862

Query: 718  ---------TKDQVADIFTKGLSRQR 768
                     ++DQVAD FTK +S Q+
Sbjct: 863  KLLDIHFVSSQDQVADGFTKPISLQQ 888


>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
          Length = 1271

 Score =  142 bits (358), Expect(2) = 7e-66
 Identities = 68/135 (50%), Positives = 99/135 (73%), Gaps = 1/135 (0%)
 Frame = +2

Query: 2    LVHVHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPL 181
            L +V+YFLGI++ R+ +   ++Q KY  +LL + + L SKP +TP + GQ LS  DG+P 
Sbjct: 935  LGYVNYFLGIEVVRSGTMFHLSQHKYTQDLLSRTAMLDSKPATTPGLLGQTLSHLDGEPF 994

Query: 182  SDATQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNHSL 361
            SDAT +R  VGALQY+T++RPDIS+AVN+ CQFM +PTT+HW  VKRIL +LKG++++ +
Sbjct: 995  SDATLYRSTVGALQYLTLTRPDISFAVNKACQFMATPTTTHWLAVKRILRYLKGTLSYGI 1054

Query: 362  -VYKSGSTHLHAYCD 403
             + +S S  +H Y D
Sbjct: 1055 QMQQSTSLDIHGYTD 1069



 Score =  137 bits (345), Expect(2) = 7e-66
 Identities = 72/156 (46%), Positives = 100/156 (64%), Gaps = 16/156 (10%)
 Frame = +1

Query: 406  DADYAGNPDDRHSTGGYAIYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYTTAELSWFRS 585
            DAD+A  PDDR STGGY I+L PNLVSWS+ K + VSRSS E EYR L+  T+E+ W + 
Sbjct: 1069 DADWASCPDDRRSTGGYGIFLGPNLVSWSSNKQKVVSRSSAESEYRALASATSEMIWIQY 1128

Query: 586  LFKDLGIILPA-LVIWCDNVSSLALATNPVYHTRTKHLEVDYHYI--------------- 717
            + ++L +   +  ++WCDN S+  LA NPV+H RTKH+E+D H+I               
Sbjct: 1129 VLQELCLSSSSPPLLWCDNKSAAHLAANPVFHARTKHIEMDLHFIRDHVLRKQLVIQYLP 1188

Query: 718  TKDQVADIFTKGLSRQRFQMLQSKLMVLLLPIRLWG 825
            + +QVADIFTK +S  +F   ++KL V+  P+ L G
Sbjct: 1189 SAEQVADIFTKHISSSQFLSFRTKLSVVPSPVSLRG 1224


>emb|CAN68364.1| hypothetical protein VITISV_021899 [Vitis vinifera]
          Length = 431

 Score =  150 bits (378), Expect(2) = 7e-66
 Identities = 81/167 (48%), Positives = 107/167 (64%), Gaps = 16/167 (9%)
 Frame = +1

Query: 406 DADYAGNPDDRHSTGGYAIYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYTTAELSWFRS 585
           DAD+A  PDDR ST GY I+   NLVSWSA K + VSRSSTE EYR L+   AEL+W +S
Sbjct: 171 DADWASCPDDRRSTSGYCIFFGGNLVSWSASKQKVVSRSSTESEYRGLANAAAELTWIQS 230

Query: 586 LFKDLGI-ILPALVIWCDNVSSLALATNPVYHTRTKHLEVDYHYI--------------- 717
           L K+L I +    V++CDN+S+  LA NP+ H+R KH+E+DYH++               
Sbjct: 231 LLKELFIPLFQPPVLYCDNLSTTYLAANPILHSRAKHVEIDYHFVRERVLQKTLDVRFLP 290

Query: 718 TKDQVADIFTKGLSRQRFQMLQSKLMVLLLPIRLWGCVRHATSAPAI 858
           ++DQVADI TK LS Q F  L+SKL VL  P+ L G V+  ++ P +
Sbjct: 291 SEDQVADILTKSLSTQHFLHLRSKLTVLSRPVCLRGDVKKCSAHPVL 337



 Score =  129 bits (325), Expect(2) = 7e-66
 Identities = 63/132 (47%), Positives = 94/132 (71%), Gaps = 1/132 (0%)
 Frame = +2

Query: 11  VHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPLSDA 190
           +++FLGI++  + S + ++Q KYI + LQ+     SK +++P+ +G  LSI DG  L D 
Sbjct: 40  LNFFLGIEVLNSRSSLHLSQAKYICDFLQRAGLSESKSMASPMAAGPVLSIADGTRLEDP 99

Query: 191 TQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNHSLVYK 370
           T +R +VGALQY TI+RPDI+Y VN++CQFMH+PT++H  VVKR+L +LKGS+ + L ++
Sbjct: 100 TLYRSLVGALQYCTITRPDIAYTVNKLCQFMHAPTSTHLQVVKRVLRYLKGSLFYGLSFQ 159

Query: 371 -SGSTHLHAYCD 403
            S S  L AY D
Sbjct: 160 PSSSLDLIAYTD 171


>gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sativa]
            gi|31430072|gb|AAP52036.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1058

 Score =  142 bits (357), Expect(2) = 2e-65
 Identities = 74/159 (46%), Positives = 104/159 (65%), Gaps = 16/159 (10%)
 Frame = +1

Query: 406  DADYAGNPDDRHSTGGYAIYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYTTAELSWFRS 585
            DAD+A   DD+ STGG+A++L  NL+SW+A+K  TVSRSSTE EY+ L+  TAE+ W R 
Sbjct: 902  DADWADCLDDKRSTGGFAVFLGSNLISWNARKQATVSRSSTEAEYKALANATAEIMWVRK 961

Query: 586  LFKDLGIILPA-LVIWCDNVSSLALATNPVYHTRTKHLEVDYHYI--------------- 717
            L ++LGI  P    +WCDN+ +  L+ NPV+H RTKH+E+DYH++               
Sbjct: 962  LLEELGISHPGPSQLWCDNIGATYLSVNPVFHARTKHIEIDYHFVREQVAQKQLALQFVP 1021

Query: 718  TKDQVADIFTKGLSRQRFQMLQSKLMVLLLPIRLWGCVR 834
            ++DQVAD FTK L  ++ QM ++ L   L+ +RL G VR
Sbjct: 1022 SQDQVADGFTKALPVRQLQMFRNNLN--LVDLRLRGSVR 1058



 Score =  136 bits (342), Expect(2) = 2e-65
 Identities = 65/137 (47%), Positives = 101/137 (73%), Gaps = 3/137 (2%)
 Frame = +2

Query: 2    LVHVHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPL 181
            L  +HYFLGI++ +   ++++NQE+Y  E+++++S  + K + TP+ + +KLS ++G+ L
Sbjct: 766  LGELHYFLGIEVKKASGNILLNQERYASEIVKRVSMENCKSVGTPLSTVEKLSAYEGEKL 825

Query: 182  S--DATQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNH 355
               DATQ+R VVGALQY+T++RPDIS++VN+VCQF+ +PTT HW  VKRIL ++KG++  
Sbjct: 826  GEKDATQYRSVVGALQYLTLTRPDISFSVNKVCQFLQNPTTVHWATVKRILRYVKGTLGL 885

Query: 356  SL-VYKSGSTHLHAYCD 403
             L V KS S  + AY D
Sbjct: 886  GLKVEKSSSNIVSAYSD 902


>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|31433472|gb|AAP54977.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1031

 Score =  149 bits (376), Expect(2) = 2e-65
 Identities = 73/145 (50%), Positives = 100/145 (68%), Gaps = 16/145 (11%)
 Frame = +1

Query: 406  DADYAGNPDDRHSTGGYAIYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYTTAELSWFRS 585
            DAD+AG  DDR STGG+A+++ PNLVSWSA+K  TVSRSSTE EY+ L+  TAE+ W ++
Sbjct: 881  DADWAGCLDDRRSTGGFAVFIGPNLVSWSARKQATVSRSSTEAEYKALANATAEIMWIQT 940

Query: 586  LFKDLGIILPALV-IWCDNVSSLALATNPVYHTRTKHLEVDYHYI--------------- 717
            L  +LGI +P +  +WCDN+ +  +  NPV+H RTKH+EVDYH++               
Sbjct: 941  LLHELGIQVPKIAKVWCDNIGAKYMTANPVFHARTKHIEVDYHFVRERVARKLLQVEYIS 1000

Query: 718  TKDQVADIFTKGLSRQRFQMLQSKL 792
            TKDQVAD FTK LS ++ +M ++ L
Sbjct: 1001 TKDQVADGFTKTLSVRQLEMFRNNL 1025



 Score =  129 bits (323), Expect(2) = 2e-65
 Identities = 60/137 (43%), Positives = 97/137 (70%), Gaps = 3/137 (2%)
 Frame = +2

Query: 2    LVHVHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPL 181
            L  +HYFLGI++      +V+ QEKY +++L++++    K ++TP+   +KLS H+G+PL
Sbjct: 745  LGRLHYFLGIEVKEVNDGIVLTQEKYAMDVLKRVNMSDCKAVNTPLSISEKLSAHEGNPL 804

Query: 182  S--DATQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNH 355
               D+T++R +VGALQY+T++RPD+S++VN+VCQ++H+ TT HW   KRIL +LK +V  
Sbjct: 805  GPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQYLHAATTKHWVAAKRILRYLKHTVKL 864

Query: 356  SL-VYKSGSTHLHAYCD 403
             L + KS S  + A+ D
Sbjct: 865  GLKISKSNSLLVSAFSD 881


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  148 bits (374), Expect(2) = 3e-65
 Identities = 69/135 (51%), Positives = 97/135 (71%), Gaps = 1/135 (0%)
 Frame = +2

Query: 2    LVHVHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPL 181
            L  VHYFLGIQ++ T + + ++Q KYI +LLQK   +H KP  TP+ +G KL + DGDP+
Sbjct: 1160 LGEVHYFLGIQVSHTNNGLHLSQTKYIRDLLQKTKMVHCKPARTPLPTGLKLRVGDGDPV 1219

Query: 182  SDATQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNHSL 361
             D   +R  VGALQY+TI+RP++S++VN+VCQFM +PT  HW VVKRIL +L+G++ H L
Sbjct: 1220 EDLHGYRSTVGALQYVTITRPELSFSVNKVCQFMQNPTEEHWKVVKRILRYLQGTLQHGL 1279

Query: 362  -VYKSGSTHLHAYCD 403
             + KS +  L  +CD
Sbjct: 1280 HLKKSSNLDLIGFCD 1294



 Score =  129 bits (323), Expect(2) = 3e-65
 Identities = 66/149 (44%), Positives = 95/149 (63%), Gaps = 17/149 (11%)
 Frame = +1

Query: 403  CDADYAGNPDDRHSTGGYAIYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYTTAELSWFR 582
            CDAD+A + DDR ST G+ ++L PNL+SW +KK   VSRSS E+EYR L+   AE++W R
Sbjct: 1293 CDADWASDLDDRRSTSGHCVFLGPNLISWQSKKQHIVSRSSIEIEYRSLAGLVAEITWLR 1352

Query: 583  SLFKDLGIIL--PALVIWCDNVSSLALATNPVYHTRTKHLEVDYHYI------------- 717
            SL  +L + L  P LV WCDN+S++ L+ NPV H RTKH+E+D +++             
Sbjct: 1353 SLLSELQLPLAKPPLV-WCDNLSTVLLSANPVLHARTKHIELDLYFVREKVIRKEVEVRH 1411

Query: 718  --TKDQVADIFTKGLSRQRFQMLQSKLMV 798
              + DQ+AD+ TK +S  +F   + KL +
Sbjct: 1412 VPSADQLADVLTKTVSSTQFIEFRHKLRI 1440


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  140 bits (353), Expect(2) = 5e-65
 Identities = 66/137 (48%), Positives = 100/137 (72%), Gaps = 3/137 (2%)
 Frame = +2

Query: 2    LVHVHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPL 181
            L  +HYFLGI++++  + +V+NQ+KY  +LL+K+  +  KP +TP+   +KLS+H+G  L
Sbjct: 1168 LGELHYFLGIEVSKVQNGIVLNQDKYANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLL 1227

Query: 182  S--DATQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNH 355
               DA+ +R VVGALQY+T++RPDI+++VN+VCQF+H+PTT HW  VKRIL +LK     
Sbjct: 1228 GPEDASHYRSVVGALQYLTLTRPDIAFSVNKVCQFLHAPTTVHWIAVKRILRYLKQCTRL 1287

Query: 356  SL-VYKSGSTHLHAYCD 403
             L ++KSGST +  + D
Sbjct: 1288 GLEIHKSGSTLVSGFSD 1304



 Score =  136 bits (343), Expect(2) = 5e-65
 Identities = 74/153 (48%), Positives = 99/153 (64%), Gaps = 16/153 (10%)
 Frame = +1

Query: 406  DADYAGNPDDRHSTGGYAIYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYTTAELSWFRS 585
            DAD+AG  DDR STGG+AI+L  NLVSW+A+K  TVSRSSTE EY+ ++  TAE+ W ++
Sbjct: 1304 DADWAGCLDDRRSTGGFAIFLGSNLVSWNARKQATVSRSSTESEYKAIANATAEIMWVQT 1363

Query: 586  LFKDLGIILP-ALVIWCDNVSSLALATNPVYHTRTKHLEVDYHYI--------------- 717
            L  +L I  P A  IWCDN+ +  L+ NPV+H RTKH+EVDYH++               
Sbjct: 1364 LLAELEIKSPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVS 1423

Query: 718  TKDQVADIFTKGLSRQRFQMLQSKLMVLLLPIR 816
            T DQVAD FTK LS +  +  +S L ++   +R
Sbjct: 1424 TNDQVADGFTKPLSVRLLENFKSNLNLVRSGLR 1456


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  141 bits (355), Expect(2) = 1e-64
 Identities = 64/134 (47%), Positives = 99/134 (73%), Gaps = 3/134 (2%)
 Frame = +2

Query: 11   VHYFLGIQITRTPSHMVINQEKYILELLQKISFLHSKPLSTPVVSGQKLSIHDGDPLS-- 184
            ++YFLGI++ +    +++ Q+KY  +LL+K+     KP+STP+ + +KLSIH+G PL   
Sbjct: 1031 LNYFLGIEVNKVRDGIILTQDKYASDLLKKVGMSDCKPISTPLSTSEKLSIHEGSPLGEK 1090

Query: 185  DATQFRQVVGALQYITISRPDISYAVNQVCQFMHSPTTSHWNVVKRILHFLKGSVNHSL- 361
            D TQ+R +VGALQY+T++RPDI+++VN+VCQF+H+PTT HW  VKRIL ++K   N  L 
Sbjct: 1091 DITQYRSIVGALQYLTLTRPDIAFSVNKVCQFLHAPTTLHWAAVKRILRYIKQCTNLGLH 1150

Query: 362  VYKSGSTHLHAYCD 403
            +++S ST + A+ D
Sbjct: 1151 IHRSDSTLVSAFSD 1164



 Score =  134 bits (337), Expect(2) = 1e-64
 Identities = 70/134 (52%), Positives = 90/134 (67%), Gaps = 16/134 (11%)
 Frame = +1

Query: 406  DADYAGNPDDRHSTGGYAIYLCPNLVSWSAKK*RTVSRSSTEVEYRQLSYTTAELSWFRS 585
            DAD+AG+ DDR STGG+A++L  NLVSWSA+K  TVSRSSTE EY+ L+  TAEL W + 
Sbjct: 1164 DADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTESEYKALANATAELIWVQI 1223

Query: 586  LFKDLGIILP-ALVIWCDNVSSLALATNPVYHTRTKHLEVDYHYI--------------- 717
            L  ++ I  P A  +WCDN+ +  L+ NP++H RTKH+EVDYH++               
Sbjct: 1224 LLTEISIKSPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDYHFVRDRVAKKLLDIEYVP 1283

Query: 718  TKDQVADIFTKGLS 759
            T DQVAD FTK LS
Sbjct: 1284 TGDQVADGFTKPLS 1297