BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia24_contig00014521
         (1578 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   393   e-118
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   389   e-116
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   380   e-114
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   380   e-114
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     387   e-114
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   380   e-113
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   387   e-112
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   387   e-112
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           385   e-112
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        385   e-112
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   375   e-111
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                384   e-111
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   374   e-109
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     374   e-109
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               384   e-105
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   387   e-105
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   386   e-104
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   386   e-104
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     356   e-104
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...   385   e-104

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  393 bits (1009), Expect(2) = e-118
 Identities = 192/373 (51%), Positives = 255/373 (68%), Gaps = 7/373 (1%)
 Frame = +1

Query: 478  WLLDSTSTFHICTKREWFSSYEKLDTGVVLVGNDNPCRIVGIGTIRFKLHDGMIRELTEV 657
            W+LDS +++HIC +REWF++YE++D G + + N + C++VG G+I+ + HDG    L EV
Sbjct: 279  WVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEV 338

Query: 658  RHVPDMTHNLISLGMLESKGFRVILENGVSKVLHGVLVVMRGVRERNLYYLKGNAVLGDI 837
            RHVP MT NLISL +L+SKGF    ++GV +V  G  ++++GV    LY+L+G+ V G  
Sbjct: 339  RHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSA 398

Query: 838  PTANSV--AKDTTRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEHCVLGKQTRVK 1011
              A+S    KD T+LWH+ L H GE+ +  L K+ LL G     L+FCEHCV GK  R K
Sbjct: 399  HVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNK 458

Query: 1012 FGTAIHRTRGTLDYVHSDVWKPSRTASLGG-----KLVDEFSRRVWIYTMRHKDEVLEVF 1176
            F  AIHRT+GTLDY+HSD W P R  SLGG      ++D++SR  W+Y M+HK E  + F
Sbjct: 459  FPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKF 518

Query: 1177 IRWKKLIDTQTGRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTPQQNRVAKRMN 1356
              WK L++ QTG+KIKRL +DNG E+    F Q  +DEGI RH  VR TPQQN VA+RMN
Sbjct: 519  KEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMN 578

Query: 1357 RTLLEKVRCMLSNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWSGKPAHDYDFL 1536
            +TLLE+ RCMLSNAGL + FWA+ ++ AC+L+NR P   I  KTP+E+WSGK A DY  L
Sbjct: 579  QTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAA-DYSNL 637

Query: 1537 HVFGCPAYFHVKE 1575
              FGC AY+HV E
Sbjct: 638  KAFGCTAYYHVSE 650



 Score = 61.2 bits (147), Expect(2) = e-118
 Identities = 38/117 (32%), Positives = 54/117 (46%)
 Frame = +2

Query: 14  IDEVVKDEDRALLLLNSLPPEYEHFRTTLLYRKSIVAYTDVSTALLNNDLRKRKQLESKD 193
           ID  ++DED AL+LL SLP  +E+F  + +  K  V+  +V +AL + +LR +    S D
Sbjct: 132 IDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSALHSRELRHKANGTSTD 191

Query: 194 SSSEALVARGRTKDRYKPXXXXXXXXXXXXXXLARDECVFCYKSGHWKKDCPKIKNK 364
                L     T  R                    D C +C + GHWK DCPK K +
Sbjct: 192 IQPSGLF----TSSRKGRKNGGKKNKPMSKGAKPDDVCNYCKEKGHWKFDCPKKKKQ 244


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
            gi|108708632|gb|ABF96427.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1326

 Score =  389 bits (1000), Expect(2) = e-116
 Identities = 195/381 (51%), Positives = 254/381 (66%), Gaps = 10/381 (2%)
 Frame = +1

Query: 457  CSTKQSEWLLDSTSTFHICTKREWFSSYEKLDTG-VVLVGNDNPCRIVGIGTIRFKLHDG 633
            C     EW+LD+  +FHIC  R+WFSSY+ +  G VV +G+DNP  IVGIG+++ K HDG
Sbjct: 285  CVASHDEWILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDG 344

Query: 634  MIRELTEVRHVPDMTHNLISLGMLESKGFRVILENGVSKVLHGVLVVMRG-VRERNLYYL 810
            M R L +VRH+P M  NLISL  L+++G++     GV KV  G LV M G +   NLY L
Sbjct: 345  MTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANLYVL 404

Query: 811  KGNAVLGDIPTANSVAKDT---TRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEH 981
            +G+ + G + TA +V+KD    T LWHM L H  E  +  L+K+ LL G T  K+ FCEH
Sbjct: 405  RGSTLHGSV-TAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKFCEH 463

Query: 982  CVLGKQTRVKFGTAIHRTRGTLDYVHSDVWKPSRTASLGGK-----LVDEFSRRVWIYTM 1146
            CV GK  RVKF T++HRT+G LDYVH+D+W PSR A LGG      ++D++SR+VW Y +
Sbjct: 464  CVFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRKVWPYFL 523

Query: 1147 RHKDEVLEVFIRWKKLIDTQTGRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTP 1326
            +HKD+    F  WK  I+ QT +++K L +DNGGE+ SD F    + EGIVRH  +  TP
Sbjct: 524  KHKDDTFAAFKEWKVRIERQTEKEVKVLRTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTP 583

Query: 1327 QQNRVAKRMNRTLLEKVRCMLSNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWS 1506
            QQN VA+RMNRT++ K RCMLSNA + K FWA+    AC+L+NR PS  +  KTP+EVWS
Sbjct: 584  QQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEVWS 643

Query: 1507 GKPAHDYDFLHVFGCPAYFHV 1569
            G PA DY  L VFGC AY HV
Sbjct: 644  GMPA-DYSQLRVFGCTAYAHV 663



 Score = 58.9 bits (141), Expect(2) = e-116
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
 Frame = +2

Query: 32  DEDRALLLLNSLPPEYEHFRTTLLYRKSIVAYTDVSTALLNND-LRKRKQLESKDSSSEA 208
           DED  LLLL SLP  Y +FR T+L  +  +   +V  AL N + ++   Q ++  S  EA
Sbjct: 142 DEDLGLLLLCSLPSSYANFRDTILLSRDELTLAEVYEALQNREKMKGMVQSDASSSKGEA 201

Query: 209 LVARGRTKDRYKPXXXXXXXXXXXXXXLARDE--CVFCYKSGHWKKDCPKIKNK 364
           L  RGR++ R                  +R +  C +C K  H+ ++C K++NK
Sbjct: 202 LQVRGRSEQRTYNDSSDRDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWKLQNK 255


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1175

 Score =  380 bits (977), Expect(2) = e-114
 Identities = 191/381 (50%), Positives = 253/381 (66%), Gaps = 10/381 (2%)
 Frame = +1

Query: 457  CSTKQSEWLLDSTSTFHICTKREWFSSYEKLDTG-VVLVGNDNPCRIVGIGTIRFKLHDG 633
            C +   EW+LD+T +FHIC  R+WFSSY+ +  G VV +G+DNP  IVGIG+++ K HDG
Sbjct: 180  CVSSHDEWILDTTCSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDG 239

Query: 634  MIRELTEVRHVPDMTHNLISLGMLESKGFRVILENGVSKVLHGVLVVMRG-VRERNLYYL 810
            M R L +VRH+P M  NLISL  L+++G++     GV KV  G LV M G +   NLY L
Sbjct: 240  MTRTLKDVRHIPRMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVL 299

Query: 811  KGNAVLGDIPTANSVAKDT---TRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEH 981
            +G+ + G + TA  V+KD    T +WHM L H  E  +  L+K+ LL G T   + FCEH
Sbjct: 300  RGSTLHGYV-TAAVVSKDEPSKTNMWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEH 358

Query: 982  CVLGKQTRVKFGTAIHRTRGTLDYVHSDVWKPSRTASLGGK-----LVDEFSRRVWIYTM 1146
            CV GK  RVKF T++HRT+G LDYVH+D+W PSR  SLGG      ++D++SR+VW Y +
Sbjct: 359  CVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFL 418

Query: 1147 RHKDEVLEVFIRWKKLIDTQTGRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTP 1326
            +HKD+    F  WK +I  QT +++K L +DNGG + SD F    + EGIV H  +  TP
Sbjct: 419  KHKDDTFAAFKEWKVMIKRQTEKEVKVLRTDNGGGFCSDAFDDYCRKEGIVMHHTIPYTP 478

Query: 1327 QQNRVAKRMNRTLLEKVRCMLSNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWS 1506
            QQN VA+RMNRT++ K RCMLSNA + K FWA+    AC+L+NR PS ++  KTP+EVWS
Sbjct: 479  QQNGVAERMNRTIISKARCMLSNARMNKRFWAEAAKTACYLINRSPSISLNKKTPIEVWS 538

Query: 1507 GKPAHDYDFLHVFGCPAYFHV 1569
            G PA +Y  L VFGC AY HV
Sbjct: 539  GMPA-NYSQLRVFGCTAYAHV 558



 Score = 60.5 bits (145), Expect(2) = e-114
 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
 Frame = +2

Query: 32  DEDRALLLLNSLPPEYEHFRTTLLYRKSIVAYTDVSTALLNND-LRKRKQLESKDSSSEA 208
           DED  LLLL SLP  Y +FR T+L  +S +   +V  AL N + ++   Q ++  S  EA
Sbjct: 37  DEDLGLLLLCSLPSSYANFRDTILLSRSELTLAEVYEALQNREKMKGMVQSDASSSKGEA 96

Query: 209 LVARGRTKDRYKPXXXXXXXXXXXXXXLARDE--CVFCYKSGHWKKDCPKIKNK 364
           L  RGR++ R                  +R +  C +C K  H+ ++C K++NK
Sbjct: 97  LQVRGRSEQRTYNDSNDRDKNQSRGRSKSRGKKFCKYCKKKNHFIEECWKLQNK 150


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  380 bits (976), Expect(2) = e-114
 Identities = 196/423 (46%), Positives = 262/423 (61%), Gaps = 10/423 (2%)
 Frame = +1

Query: 340  RLSEDQKQNNDTKNPEINVAKTGSKXXXXXXXXXXXXXXCSTKQSEWLLDSTSTFHICTK 519
            +L   +K+ +D K   +  AK                  C     EW+LD+  +FHI   
Sbjct: 251  KLQNKEKRKSDGKASVVTSAKNSDSGDCLVVFAG-----CVASHDEWILDTACSFHIYIN 305

Query: 520  REWFSSYEKLDTG-VVLVGNDNPCRIVGIGTIRFKLHDGMIRELTEVRHVPDMTHNLISL 696
            R+WFSSY+ +  G VV +GNDNP  IVGIG+++ K HDG+ R L +VRH+P M  NLISL
Sbjct: 306  RDWFSSYKSVQNGDVVRMGNDNPREIVGIGSVQIKTHDGITRTLKDVRHIPGMARNLISL 365

Query: 697  GMLESKGFRVILENGVSKVLHGVLVVMRG-VRERNLYYLKGNAVLGDIPTANSVAKDT-- 867
              L+++G++     GV KV  G LV M G +   NLY L+G+ + G + TA +V KD   
Sbjct: 366  STLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSV-TAAAVTKDEPN 424

Query: 868  -TRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEHCVLGKQTRVKFGTAIHRTRGT 1044
             T LWHM L H  E  +  L+K+ LL G T   + FCE CV GK  RVKF T++HRT+G 
Sbjct: 425  KTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCERCVFGKHKRVKFNTSVHRTKGI 484

Query: 1045 LDYVHSDVWKPSRTASLGGK-----LVDEFSRRVWIYTMRHKDEVLEVFIRWKKLIDTQT 1209
            LDYVH+D+W PSR  SLGG      ++D++SR+VW Y ++HKD+    F  WK +I+ QT
Sbjct: 485  LDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQT 544

Query: 1210 GRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTPQQNRVAKRMNRTLLEKVRCML 1389
             +++K L +DN GE+ SD F    + EGIVRH  +  TPQQN VA+RMNRT++ K RCML
Sbjct: 545  EKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCML 604

Query: 1390 SNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWSGKPAHDYDFLHVFGCPAYFHV 1569
            SNA + K FWA+    AC+L+NR PS  +  KTP+E+WSG PA DY  L VFGC AY HV
Sbjct: 605  SNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPA-DYSQLRVFGCTAYAHV 663

Query: 1570 KED 1578
              +
Sbjct: 664  DNE 666



 Score = 60.1 bits (144), Expect(2) = e-114
 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
 Frame = +2

Query: 32  DEDRALLLLNSLPPEYEHFRTTLLYRKSIVAYTDVSTALLNND-LRKRKQLESKDSSSEA 208
           DED  LLLL SLP  YE+FR T+L  +  +   +V  AL N + ++   Q ++  S  EA
Sbjct: 142 DEDLGLLLLCSLPSSYENFRDTILLSRDELTLAEVYEALQNREKMKGMVQSDASSSKGEA 201

Query: 209 LVARGRTKDRYKPXXXXXXXXXXXXXXLARDE--CVFCYKSGHWKKDCPKIKNK 364
           L  +GR++ R                  +R +  C +C K  H+ K+C K++NK
Sbjct: 202 LQVKGRSEQRTYNDSNDRDKSKSRGRSKSRGKKFCKYCKKKIHFIKECWKLQNK 255


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  387 bits (995), Expect(2) = e-114
 Identities = 187/379 (49%), Positives = 253/379 (66%), Gaps = 8/379 (2%)
 Frame = +1

Query: 457  CSTKQSEWLLDSTSTFHICTKREWFSSYEKLDTGVVLVGNDNPCRIVGIGTIRFKLHDGM 636
            C+    +W+LD+  T+H+C  R+WF++YE +  G VL+G+D PC + GIGT++ K+ DG 
Sbjct: 202  CAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGC 261

Query: 637  IRELTEVRHVPDMTHNLISLGMLESKGFRVILENGVSKVLHGVLVVMRG-VRERNLYYLK 813
            IR L +VRH+P++  +LISL  L+ KG++    +G+ KV  G LVVM+  ++  NLY+L+
Sbjct: 262  IRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLR 321

Query: 814  GNAVLGDIPTANSVAK--DTTRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEHCV 987
            G  +LG++   +      D T LWHM L H  E  L  L K+GLL G +  KL FCEHC+
Sbjct: 322  GTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCI 381

Query: 988  LGKQTRVKFGTAIHRTRGTLDYVHSDVWKPSRTASLGGK-----LVDEFSRRVWIYTMRH 1152
             GK  RVKF T+ H T G LDYVHSD+W P+R  S GG      +VD++SR+VW Y ++H
Sbjct: 382  FGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKH 441

Query: 1153 KDEVLEVFIRWKKLIDTQTGRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTPQQ 1332
            K +  +VF  WK +++ QT RK+K L +DNG E  S  F    + EGIVRH+ V  TPQQ
Sbjct: 442  KYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQ 501

Query: 1333 NRVAKRMNRTLLEKVRCMLSNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWSGK 1512
            N VA+RMNRT++ K RCMLSNA L K FWA+ ++ AC+L+NR PS AI  KTP+EVWSG 
Sbjct: 502  NGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGS 561

Query: 1513 PAHDYDFLHVFGCPAYFHV 1569
            PA +Y  L VFGC AY HV
Sbjct: 562  PA-NYSDLRVFGCTAYAHV 579



 Score = 52.8 bits (125), Expect(2) = e-114
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
 Frame = +2

Query: 32  DEDRALLLLNSLPPEYEHFRTTLLYRKSIVAYTDVSTAL-LNNDLRKRKQLESKDSSSEA 208
           +ED  L+LL SLP  Y +FR T+LY +  +   +V  AL     ++K    E  +S +E 
Sbjct: 49  EEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEG 108

Query: 209 LVARGRTKDR---YKPXXXXXXXXXXXXXXLAR-DECVFCYKSGHWKKDCPKIKNK 364
           LV RGR +++    K                 R   C +C + GH   +C K+++K
Sbjct: 109 LVVRGRQQEKNTNNKSRDKSSSIYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDK 164


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  380 bits (977), Expect(2) = e-113
 Identities = 185/377 (49%), Positives = 250/377 (66%), Gaps = 6/377 (1%)
 Frame = +1

Query: 457  CSTKQSEWLLDSTSTFHICTKREWFSSYEKLDTGVVLVGNDNPCRIVGIGTIRFKLHDGM 636
            C     EWLLD+  T+H+C  R+WF++YE +  G VL+G++ PC++ G+GTI+ K+ DG 
Sbjct: 235  CVQTSDEWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGC 294

Query: 637  IRELTEVRHVPDMTHNLISLGMLESKGFRVILENGVSKVLHGVLVVMRG-VRERNLYYLK 813
            IR L++VRH+P +  NLISL  L+ KG+R    +G+ KV  G LVVM+  ++  +LY+L+
Sbjct: 295  IRTLSDVRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLYHLQ 354

Query: 814  GNAVLGDIPTANSVAKDTTRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEHCVLG 993
            G  ++G++        ++  LWHM L H  E  L  L K+GLL G    KL FCEHC+ G
Sbjct: 355  GTTIVGNVAAVTDSLSNSD-LWHMRLGHMSEIGLAELSKRGLLDGQNIGKLKFCEHCIFG 413

Query: 994  KQTRVKFGTAIHRTRGTLDYVHSDVWKPSRTASLGGK-----LVDEFSRRVWIYTMRHKD 1158
            K  RVKF T+ H T G LDYVHSD+W P+R  S GG      +VD++SR+VW Y ++HK 
Sbjct: 414  KHKRVKFTTSTHTTEGILDYVHSDLWGPARKRSFGGARYMMTIVDDYSRKVWPYFLKHKF 473

Query: 1159 EVLEVFIRWKKLIDTQTGRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTPQQNR 1338
            E   VF  WK +++ QT RK+K L +DNG E+ S  F    + EGIVRH+ V  TPQQN 
Sbjct: 474  EAFLVFKEWKTMVERQTERKVKVLRTDNGMEFCSRQFKSYCRSEGIVRHYTVSHTPQQNG 533

Query: 1339 VAKRMNRTLLEKVRCMLSNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWSGKPA 1518
            V +RMNRT++ K RCMLSNAGL + FWA+  + AC+L+NR PS AI  KTP+E+WSG PA
Sbjct: 534  VVERMNRTIISKARCMLSNAGLPRRFWAEAASTACYLINRSPSYAIDKKTPIEMWSGSPA 593

Query: 1519 HDYDFLHVFGCPAYFHV 1569
             +Y  L VFGC AY HV
Sbjct: 594  -NYSDLKVFGCTAYAHV 609



 Score = 55.8 bits (133), Expect(2) = e-113
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
 Frame = +2

Query: 32  DEDRALLLLNSLPPEYEHFRTTLLYRKSIVAYTDVSTAL-LNNDLRKRKQLESKDSSSEA 208
           +ED  L+LL SLP  Y +FR T+LY +  +   +V  AL     ++K    E  +S  E+
Sbjct: 82  EEDLGLILLCSLPSSYANFRDTILYSRDTLTLQEVYDALHAKEKMKKMVPSEGSNSQPES 141

Query: 209 LVARGRTKDR---YKPXXXXXXXXXXXXXXLAR-DECVFCYKSGHWKKDCPKIKNK 364
           LV RGR +++    K                 R   C +C + GH   DC K++NK
Sbjct: 142 LVVRGRQQEKNTDNKSRDKSSSGYRGRSKSRGRYKSCKYCKRGGHDISDCWKLQNK 197


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  387 bits (995), Expect(2) = e-112
 Identities = 185/379 (48%), Positives = 255/379 (67%), Gaps = 8/379 (2%)
 Frame = +1

Query: 457  CSTKQSEWLLDSTSTFHICTKREWFSSYEKLDTGVVLVGNDNPCRIVGIGTIRFKLHDGM 636
            C+    +W+L++   +H+C  R+WF++YE +  G VL+G+D PC + GIGT++ K+ DG 
Sbjct: 500  CAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGC 559

Query: 637  IRELTEVRHVPDMTHNLISLGMLESKGFRVILENGVSKVLHGVLVVMRG-VRERNLYYLK 813
            IR L++VRH+P++  +LISL  L+ KG++    +G+ KV  G LVVM+  ++  NLY+L+
Sbjct: 560  IRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLR 619

Query: 814  GNAVLGDIPTANSVAK--DTTRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEHCV 987
            G  +LG++   +      D T LWHM L H  E  L  L K+GLL G +  KL FCEHC+
Sbjct: 620  GTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCI 679

Query: 988  LGKQTRVKFGTAIHRTRGTLDYVHSDVWKPSRTASLGGK-----LVDEFSRRVWIYTMRH 1152
             GK  RVKF T+ H T G LDYVHSD+W P+R  S GG      +VD++SR+VW Y ++H
Sbjct: 680  FGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKH 739

Query: 1153 KDEVLEVFIRWKKLIDTQTGRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTPQQ 1332
            K +  +VF  WK +++ QT RK+K L +DNG E+ S  F    + EGIVRH+ V  TPQQ
Sbjct: 740  KYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQ 799

Query: 1333 NRVAKRMNRTLLEKVRCMLSNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWSGK 1512
            N VA+RMNRT++ K RC+LSNAGL K FWA+ ++ AC+L+NR PS AI  KTP+EVWSG 
Sbjct: 800  NGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGS 859

Query: 1513 PAHDYDFLHVFGCPAYFHV 1569
            PA +Y  L VFGC AY HV
Sbjct: 860  PA-NYSDLRVFGCTAYAHV 877



 Score = 48.1 bits (113), Expect(2) = e-112
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
 Frame = +2

Query: 32  DEDRALLLLNSLPPEYEHFRTTLLYRKSIVAYTDVSTAL-LNNDLRKRKQLESKDSSSEA 208
           +ED  L+LL SLP  Y +FR T+LY +  +   +V  AL +   ++K    E  +S +E 
Sbjct: 347 EEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEG 406

Query: 209 LVARGRTKDR-YKPXXXXXXXXXXXXXXLAR---DECVFCYKSGHWKKDCPKIKNK 364
           L+  GR +++  K                +R     C +C + GH   +C K+ +K
Sbjct: 407 LIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDIFECWKLHDK 462


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  387 bits (995), Expect(2) = e-112
 Identities = 185/379 (48%), Positives = 255/379 (67%), Gaps = 8/379 (2%)
 Frame = +1

Query: 457  CSTKQSEWLLDSTSTFHICTKREWFSSYEKLDTGVVLVGNDNPCRIVGIGTIRFKLHDGM 636
            C+    +W+L++   +H+C  R+WF++YE +  G VL+G+D PC + GIGT++ K+ DG 
Sbjct: 293  CAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGC 352

Query: 637  IRELTEVRHVPDMTHNLISLGMLESKGFRVILENGVSKVLHGVLVVMRG-VRERNLYYLK 813
            IR L++VRH+P++  +LISL  L+ KG++    +G+ KV  G LVVM+  ++  NLY+L+
Sbjct: 353  IRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLR 412

Query: 814  GNAVLGDIPTANSVAK--DTTRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEHCV 987
            G  +LG++   +      D T LWHM L H  E  L  L K+GLL G +  KL FCEHC+
Sbjct: 413  GTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCI 472

Query: 988  LGKQTRVKFGTAIHRTRGTLDYVHSDVWKPSRTASLGGK-----LVDEFSRRVWIYTMRH 1152
             GK  RVKF T+ H T G LDYVHSD+W P+R  S GG      +VD++SR+VW Y ++H
Sbjct: 473  FGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKH 532

Query: 1153 KDEVLEVFIRWKKLIDTQTGRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTPQQ 1332
            K +  +VF  WK +++ QT RK+K L +DNG E+ S  F    + EGIVRH+ V  TPQQ
Sbjct: 533  KYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQ 592

Query: 1333 NRVAKRMNRTLLEKVRCMLSNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWSGK 1512
            N VA+RMNRT++ K RC+LSNAGL K FWA+ ++ AC+L+NR PS AI  KTP+EVWSG 
Sbjct: 593  NGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGS 652

Query: 1513 PAHDYDFLHVFGCPAYFHV 1569
            PA +Y  L VFGC AY HV
Sbjct: 653  PA-NYSDLRVFGCTAYAHV 670



 Score = 48.1 bits (113), Expect(2) = e-112
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
 Frame = +2

Query: 32  DEDRALLLLNSLPPEYEHFRTTLLYRKSIVAYTDVSTAL-LNNDLRKRKQLESKDSSSEA 208
           +ED  L+LL SLP  Y +FR T+LY +  +   +V  AL +   ++K    E  +S +E 
Sbjct: 140 EEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEG 199

Query: 209 LVARGRTKDR-YKPXXXXXXXXXXXXXXLAR---DECVFCYKSGHWKKDCPKIKNK 364
           L+  GR +++  K                +R     C +C + GH   +C K+ +K
Sbjct: 200 LIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDIFECWKLHDK 255


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  385 bits (989), Expect(2) = e-112
 Identities = 189/381 (49%), Positives = 253/381 (66%), Gaps = 10/381 (2%)
 Frame = +1

Query: 457  CSTKQSEWLLDSTSTFHICTKREWFSSYEKLDTG-VVLVGNDNPCRIVGIGTIRFKLHDG 633
            C     EW+LDS  +FHICTKR WFSSY+ +  G VV +G+DNPC IVGIG+++ K  DG
Sbjct: 285  CVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDG 344

Query: 634  MIRELTEVRHVPDMTHNLISLGMLESKGFRVILENGVSKVLHGVLVVMRG-VRERNLYYL 810
            M R L  VR++P M+ NLISL  L+++G++    +GV KV  G LV ++G +    LY L
Sbjct: 345  MTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVL 404

Query: 811  KGNAVLGDIPTANSVAKDT---TRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEH 981
            +G  + G    A +V  D    T LWHM L H     +  L+K+ LLKG T+ K+ FCEH
Sbjct: 405  RGCTLPGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEH 464

Query: 982  CVLGKQTRVKFGTAIHRTRGTLDYVHSDVWKPSRTASLGGK-----LVDEFSRRVWIYTM 1146
            C+ GK  RV+F T++H T+GTLDYVH+D+W PS+  SLGG      ++D++SR+VW Y +
Sbjct: 465  CIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFL 524

Query: 1147 RHKDEVLEVFIRWKKLIDTQTGRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTP 1326
            +HKD+    F  WK +I+ QT RK+K L +DNGGE+ S  F    + EGIVRH  +  TP
Sbjct: 525  KHKDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTP 584

Query: 1327 QQNRVAKRMNRTLLEKVRCMLSNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWS 1506
            QQN VA+RMNRT++ + RCMLS+A + K FWA+  + AC+L+NR PS  +  KTP+EVWS
Sbjct: 585  QQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWS 644

Query: 1507 GKPAHDYDFLHVFGCPAYFHV 1569
            G PA DY  L VFGC AY HV
Sbjct: 645  GTPA-DYSQLKVFGCTAYAHV 664



 Score = 50.4 bits (119), Expect(2) = e-112
 Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
 Frame = +2

Query: 32  DEDRALLLLNSLPPEYEHFRTTLLYRKSIVAYTDVSTALLNNDLRKRKQLESKDSSS--- 202
           DED  LLLL SLP  Y +FR T+L  +  +   +V  AL N +  K K +   D SS   
Sbjct: 140 DEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKE--KMKIMVQNDGSSSSK 197

Query: 203 -EALVARGRTKDRYKPXXXXXXXXXXXXXXLARDE-CVFCYKSGHWKKDCPKIKNK 364
            EAL  RGRT+++                     + CV+C    H   +C K++ K
Sbjct: 198 GEALHVRGRTENKTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAK 253


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  385 bits (990), Expect(2) = e-112
 Identities = 187/379 (49%), Positives = 254/379 (67%), Gaps = 8/379 (2%)
 Frame = +1

Query: 457  CSTKQSEWLLDSTSTFHICTKREWFSSYEKLDTGVVLVGNDNPCRIVGIGTIRFKLHDGM 636
            C+    +W+LD+  T+H+C  R+WF++YE +  G VL+G+D PC + GIGT++ K+ DG 
Sbjct: 293  CAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGC 352

Query: 637  IRELTEVRHVPDMTHNLISLGMLESKGFRVILENGVSKVLHGVLVVMRG-VRERNLYYLK 813
            IR L++VRH+P++  +LISL  L+ KG++    +G+ KV  G LVVM+  ++  NLY+L+
Sbjct: 353  IRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQ 412

Query: 814  GNAVLGDIPTANSVAK--DTTRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEHCV 987
            G  +LG++ T +      D T LWHM L H  E  L  L K+GLL G +  KL FCEHC+
Sbjct: 413  GTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCI 472

Query: 988  LGKQTRVKFGTAIHRTRGTLDYVHSDVWKPSRTASLGGK-----LVDEFSRRVWIYTMRH 1152
             GK  RVKF T+ H T G LDYVHSD+W P+R  S GG      +VD++SR+VW Y ++H
Sbjct: 473  FGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKH 532

Query: 1153 KDEVLEVFIRWKKLIDTQTGRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTPQQ 1332
            K +   VF  WK +++ QT RK+K L +DNG E+ S  F    + EGIVRH+ V  TPQQ
Sbjct: 533  KYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQ 592

Query: 1333 NRVAKRMNRTLLEKVRCMLSNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWSGK 1512
            N VA+RMNR ++ K RCMLSNAGL K FWA+ ++ AC+L+NR PS A   KTP+EVWSG 
Sbjct: 593  NGVAERMNRIIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYA-NKKTPIEVWSGS 651

Query: 1513 PAHDYDFLHVFGCPAYFHV 1569
            PA +Y  L VFGC AY HV
Sbjct: 652  PA-NYSDLKVFGCTAYAHV 669



 Score = 49.7 bits (117), Expect(2) = e-112
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
 Frame = +2

Query: 20  EVVKDE-DRALLLLNSLPPEYEHFRTTLLYRKSIVAYTDVSTAL-LNNDLRKRKQLESKD 193
           EV  DE D AL+LL SLP  Y +FR T+LY +  +   +V  AL     ++K    E  +
Sbjct: 135 EVKYDEKDLALILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSN 194

Query: 194 SSSEALVARGRTKDR---YKPXXXXXXXXXXXXXXLAR-DECVFCYKSGHWKKDCPKIKN 361
           S +E LV RG  +++    K                 R   C +C + GH    C K+++
Sbjct: 195 SQAEGLVVRGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQD 254

Query: 362 K 364
           K
Sbjct: 255 K 255


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  375 bits (964), Expect(2) = e-111
 Identities = 189/375 (50%), Positives = 249/375 (66%), Gaps = 10/375 (2%)
 Frame = +1

Query: 475  EWLLDSTSTFHICTKREWFSSYEKLDT-GVVLVGNDNPCRIVGIGTIRFKLHDGMIRELT 651
            EW+LD+  +FHIC  R+WFSSY+ +    VV +G+DNP  IVGIG+++ K HDGM R L 
Sbjct: 291  EWILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLK 350

Query: 652  EVRHVPDMTHNLISLGMLESKGFRVILENGVSKVLHGVLVVMRG-VRERNLYYLKGNAVL 828
            +VRH+P M  NLISL  L+++G++     GV KV  G LV M G +   NLY L+G+ + 
Sbjct: 351  DVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLH 410

Query: 829  GDIPTANSVAKDT---TRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEHCVLGKQ 999
            G + TA +V KD    T LWHM L H  E  +  L+K+ LL G T   + FCEHCV GK 
Sbjct: 411  GSV-TAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKH 469

Query: 1000 TRVKFGTAIHRTRGTLDYVHSDVWKPSRTASLGGK-----LVDEFSRRVWIYTMRHKDEV 1164
             RVKF T++HRT+G LDYVH+D+W PSR  SLGG      ++D++SR+ W Y ++HKD+ 
Sbjct: 470  KRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHKDDT 529

Query: 1165 LEVFIRWKKLIDTQTGRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTPQQNRVA 1344
               F   K +I+ QT +++K L +DNGGE+ SD F    + EGIVRH  +  TPQQN VA
Sbjct: 530  FAAFKERKVMIERQTEKEVKVLCTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVA 589

Query: 1345 KRMNRTLLEKVRCMLSNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWSGKPAHD 1524
            +RMNRT++ K RCMLSNA + K FWA+    AC+L+NR PS  +  KTP+E+WSG PA D
Sbjct: 590  ERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPA-D 648

Query: 1525 YDFLHVFGCPAYFHV 1569
            Y  L VFGC AY HV
Sbjct: 649  YSQLRVFGCTAYAHV 663



 Score = 57.0 bits (136), Expect(2) = e-111
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
 Frame = +2

Query: 32  DEDRALLLLNSLPPEYEHFRTTLLYRKSIVAYTDVSTALLNND-LRKRKQLESKDSSSEA 208
           DED  LLLL SLP  Y +FR T+L  +  +   +V  AL N + ++   Q  +  S  EA
Sbjct: 142 DEDLGLLLLCSLPSSYANFRHTILLSRDELTLAEVYEALQNREKMKGMVQSYASSSKGEA 201

Query: 209 LVARGRTKDRYKPXXXXXXXXXXXXXXLARDE--CVFCYKSGHWKKDCPKIKNK 364
           L  RGR++ R                  +R +  C +C K  H+ ++C K++NK
Sbjct: 202 LQVRGRSEQRTYNDSNDHDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWKLQNK 255


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  384 bits (987), Expect(2) = e-111
 Identities = 184/379 (48%), Positives = 254/379 (67%), Gaps = 8/379 (2%)
 Frame = +1

Query: 457  CSTKQSEWLLDSTSTFHICTKREWFSSYEKLDTGVVLVGNDNPCRIVGIGTIRFKLHDGM 636
            C+    +W+LD+  T+H+C  R+WF++YE +  G VL+G+D PC + GIGT++ K+ DG 
Sbjct: 278  CAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGC 337

Query: 637  IRELTEVRHVPDMTHNLISLGMLESKGFRVILENGVSKVLHGVLVVMRG-VRERNLYYLK 813
            IR L++VRH+P++  +LISL  L+ KG++    +G+ KV  G LVVM+  ++  NLY+L+
Sbjct: 338  IRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQ 397

Query: 814  GNAVLGDIPTANSVAK--DTTRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEHCV 987
            G  +LG++ T +      D T LWHM L H  E  L  L  +GLL G +  KL FCEHC+
Sbjct: 398  GTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCI 457

Query: 988  LGKQTRVKFGTAIHRTRGTLDYVHSDVWKPSRTASLGGK-----LVDEFSRRVWIYTMRH 1152
             GK  RVKF T+ H T G LDYVHSD+W P+R  S GG      +V+++SR+VW Y ++H
Sbjct: 458  FGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKH 517

Query: 1153 KDEVLEVFIRWKKLIDTQTGRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTPQQ 1332
            K +   VF  WK +++ QT RK+K L +DNG E+ S  F    + EGI+RH+ V  TPQQ
Sbjct: 518  KYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQ 577

Query: 1333 NRVAKRMNRTLLEKVRCMLSNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWSGK 1512
            N VA+RMNRT++ K RCMLSNAGL K FWA+ ++ AC+L+NR P  AI  KTP++VWSG 
Sbjct: 578  NGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIKVWSGS 637

Query: 1513 PAHDYDFLHVFGCPAYFHV 1569
            PA +Y  L VFGC AY HV
Sbjct: 638  PA-NYSDLKVFGCTAYAHV 655



 Score = 47.8 bits (112), Expect(2) = e-111
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
 Frame = +2

Query: 32  DEDRALLLLNSLPPEYEHFRTTLLYRKSIVAYTDVSTAL-LNNDLRKRKQLESKDSSSEA 208
           +ED  L+LL SLP  Y +FR T+LY +  +   +V  AL     ++K    E  +S +E 
Sbjct: 125 EEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEG 184

Query: 209 LVARGRTKDR---YKPXXXXXXXXXXXXXXLAR-DECVFCYKSGHWKKDCPKIKNK 364
           LV +G  +++    K                 R   C +C + GH    C K+++K
Sbjct: 185 LVVQGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDK 240


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  374 bits (959), Expect(2) = e-109
 Identities = 180/379 (47%), Positives = 248/379 (65%), Gaps = 8/379 (2%)
 Frame = +1

Query: 457  CSTKQSEWLLDSTSTFHICTKREWFSSYEKLDTGVVLVGNDNPCRIVGIGTIRFKLHDGM 636
            C+    +W+LD+  T+H+C  R+WF++YE L  G VL+G+D PC + GIGT++ K+ DG 
Sbjct: 328  CAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGY 387

Query: 637  IRELTEVRHVPDMTHNLISLGMLESKGFRVILENGVSKVLHGVLVVMRG-VRERNLYYLK 813
            IR L++VRH+P++  +LISL  L+ KG++    +G+ KV  G LVVM+  ++  NLY+L+
Sbjct: 388  IRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLR 447

Query: 814  GNAVLGDIPTANSVAK--DTTRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEHCV 987
            G  +LG++   +      D T LWHM L H  E  L  L K+ LL G +  KL FCEHC+
Sbjct: 448  GTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCI 507

Query: 988  LGKQTRVKFGTAIHRTRGTLDYVHSDVWKPSRTASLGGK-----LVDEFSRRVWIYTMRH 1152
             GK  RVKF T+ H T G LDYVHSD+W P+   S GG      +VD++SR+VW Y ++H
Sbjct: 508  FGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKH 567

Query: 1153 KDEVLEVFIRWKKLIDTQTGRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTPQQ 1332
            K +  +VF  WK +++ QT +K+K L +DNG E+ S  F    + EGIV H+ V  TPQQ
Sbjct: 568  KYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQ 627

Query: 1333 NRVAKRMNRTLLEKVRCMLSNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWSGK 1512
            N VA+RMN  ++ K RCMLSNA L K FWA+ ++  C+L+NR PS A   KTP+EVWSG 
Sbjct: 628  NGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGS 687

Query: 1513 PAHDYDFLHVFGCPAYFHV 1569
            PA +Y  L VFGC AY HV
Sbjct: 688  PA-NYSDLRVFGCTAYAHV 705



 Score = 51.2 bits (121), Expect(2) = e-109
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
 Frame = +2

Query: 32  DEDRALLLLNSLPPEYEHFRTTLLYRKSIVAYTDVSTAL-LNNDLRKRKQLESKDSSSEA 208
           +ED  L+LL SLP  Y +FR T+LY    +   +V  AL     ++K    E  +S +E 
Sbjct: 175 EEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDALHAKEKMKKMVPSEGSNSQAEG 234

Query: 209 LVARGRTKDR-YKPXXXXXXXXXXXXXXLAR---DECVFCYKSGHWKKDCPKIKNK 364
           LV RGR +++  K                +R     C +C + GH   +C K+++K
Sbjct: 235 LVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDK 290


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  374 bits (959), Expect(2) = e-109
 Identities = 180/379 (47%), Positives = 248/379 (65%), Gaps = 8/379 (2%)
 Frame = +1

Query: 457  CSTKQSEWLLDSTSTFHICTKREWFSSYEKLDTGVVLVGNDNPCRIVGIGTIRFKLHDGM 636
            C+    +W+LD+  T+H+C  R+WF++YE L  G VL+G+D PC + GIGT++ K+ DG 
Sbjct: 328  CAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGY 387

Query: 637  IRELTEVRHVPDMTHNLISLGMLESKGFRVILENGVSKVLHGVLVVMRG-VRERNLYYLK 813
            IR L++VRH+P++  +LISL  L+ KG++    +G+ KV  G LVVM+  ++  NLY+L+
Sbjct: 388  IRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLR 447

Query: 814  GNAVLGDIPTANSVAK--DTTRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEHCV 987
            G  +LG++   +      D T LWHM L H  E  L  L K+ LL G +  KL FCEHC+
Sbjct: 448  GTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCI 507

Query: 988  LGKQTRVKFGTAIHRTRGTLDYVHSDVWKPSRTASLGGK-----LVDEFSRRVWIYTMRH 1152
             GK  RVKF T+ H T G LDYVHSD+W P+   S GG      +VD++SR+VW Y ++H
Sbjct: 508  FGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKH 567

Query: 1153 KDEVLEVFIRWKKLIDTQTGRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTPQQ 1332
            K +  +VF  WK +++ QT +K+K L +DNG E+ S  F    + EGIV H+ V  TPQQ
Sbjct: 568  KYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQ 627

Query: 1333 NRVAKRMNRTLLEKVRCMLSNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWSGK 1512
            N VA+RMN  ++ K RCMLSNA L K FWA+ ++  C+L+NR PS A   KTP+EVWSG 
Sbjct: 628  NGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGS 687

Query: 1513 PAHDYDFLHVFGCPAYFHV 1569
            PA +Y  L VFGC AY HV
Sbjct: 688  PA-NYSDLRVFGCTAYAHV 705



 Score = 51.2 bits (121), Expect(2) = e-109
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
 Frame = +2

Query: 32  DEDRALLLLNSLPPEYEHFRTTLLYRKSIVAYTDVSTAL-LNNDLRKRKQLESKDSSSEA 208
           +ED  L+LL SLP  Y +FR T+LY    +   +V  AL     ++K    E  +S +E 
Sbjct: 175 EEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDALHAKEKMKKMVPSEGSNSQAEG 234

Query: 209 LVARGRTKDR-YKPXXXXXXXXXXXXXXLAR---DECVFCYKSGHWKKDCPKIKNK 364
           LV RGR +++  K                +R     C +C + GH   +C K+++K
Sbjct: 235 LVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDK 290


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  384 bits (987), Expect(2) = e-105
 Identities = 184/379 (48%), Positives = 254/379 (67%), Gaps = 8/379 (2%)
 Frame = +1

Query: 457  CSTKQSEWLLDSTSTFHICTKREWFSSYEKLDTGVVLVGNDNPCRIVGIGTIRFKLHDGM 636
            C+    +W+LD+  T+H+C  R+WF++YE +  G VL+G+D PC + GIGT++ K+ DG 
Sbjct: 110  CAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGC 169

Query: 637  IRELTEVRHVPDMTHNLISLGMLESKGFRVILENGVSKVLHGVLVVMRG-VRERNLYYLK 813
            IR L++VRH+P++  +LISL  L+ KG++    +G+ KV  G LVVM+  ++  NLY+L+
Sbjct: 170  IRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQ 229

Query: 814  GNAVLGDIPTANSVAK--DTTRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEHCV 987
            G  +LG++ T +      D T LWHM L H  E  L  L  +GLL G +  KL FCEHC+
Sbjct: 230  GTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCI 289

Query: 988  LGKQTRVKFGTAIHRTRGTLDYVHSDVWKPSRTASLGGK-----LVDEFSRRVWIYTMRH 1152
             GK  RVKF T+ H T G LDYVHSD+W P+R  S GG      +V+++SR+VW Y ++H
Sbjct: 290  FGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKH 349

Query: 1153 KDEVLEVFIRWKKLIDTQTGRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTPQQ 1332
            K +   VF  WK +++ QT RK+K L +DNG E+ S  F    + EGI+RH+ V  TPQQ
Sbjct: 350  KYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQ 409

Query: 1333 NRVAKRMNRTLLEKVRCMLSNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWSGK 1512
            N VA+RMNRT++ K RCMLSNAGL K FWA+ ++ AC+L+NR P  AI  KTP++VWSG 
Sbjct: 410  NGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIKVWSGS 469

Query: 1513 PAHDYDFLHVFGCPAYFHV 1569
            PA +Y  L VFGC AY HV
Sbjct: 470  PA-NYSDLKVFGCTAYAHV 487



 Score = 27.3 bits (59), Expect(2) = e-105
 Identities = 16/66 (24%), Positives = 27/66 (40%)
 Frame = +2

Query: 167 KRKQLESKDSSSEALVARGRTKDRYKPXXXXXXXXXXXXXXLARDECVFCYKSGHWKKDC 346
           K    +S+D SS +   R +++ RYK                    C +C + GH    C
Sbjct: 26  KNTNNKSRDKSSSSYRGRSKSRGRYK-------------------SCKYCKRDGHDISKC 66

Query: 347 PKIKNK 364
            K+++K
Sbjct: 67  WKLQDK 72


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  387 bits (994), Expect = e-105
 Identities = 194/423 (45%), Positives = 267/423 (63%), Gaps = 10/423 (2%)
 Frame = +1

Query: 331  LEERLSEDQKQNNDTKNPEINVAKTGSKXXXXXXXXXXXXXXCSTKQSEWLLDSTSTFHI 510
            ++E      K+  + K+ +++VA   +               C     EW+LDS  +FHI
Sbjct: 242  IDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAG-CVAGHDEWILDSACSFHI 300

Query: 511  CTKREWFSSYEKLDTG-VVLVGNDNPCRIVGIGTIRFKLHDGMIRELTEVRHVPDMTHNL 687
            CTKR WFSSY+ +  G VV +G+DNPC IVGIG+++ K  DGM R L  VR++P M+ NL
Sbjct: 301  CTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNL 360

Query: 688  ISLGMLESKGFRVILENGVSKVLHGVLVVMRG-VRERNLYYLKGNAVLGDIPTANSVAKD 864
            ISL  L+++G++    +GV KV  G LV ++G V    LY L+G  + G    A ++  D
Sbjct: 361  ISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLTGSDSAAAAITND 420

Query: 865  T---TRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEHCVLGKQTRVKFGTAIHRT 1035
                T LWHM L H     +  L+K+ LLKG T+ K+ FCEHC+ GK  RV+F T++H T
Sbjct: 421  EPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTT 480

Query: 1036 RGTLDYVHSDVWKPSRTASLGGK-----LVDEFSRRVWIYTMRHKDEVLEVFIRWKKLID 1200
            +GTLDYVH+D+W PS+  SLGG      ++D++SR+VW Y ++HKD+    F  WK +I+
Sbjct: 481  KGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIE 540

Query: 1201 TQTGRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTPQQNRVAKRMNRTLLEKVR 1380
             QT RK+K L +DNGGE+ S  F    + EGIVRH  +  TPQQN VA+RMNRT++ + R
Sbjct: 541  RQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRAR 600

Query: 1381 CMLSNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWSGKPAHDYDFLHVFGCPAY 1560
            CMLS+A + K FWA+  + AC+L+NR PS  +  KTP+EVWSG PA DY  L VFGC AY
Sbjct: 601  CMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPA-DYSQLKVFGCTAY 659

Query: 1561 FHV 1569
             HV
Sbjct: 660  AHV 662


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  386 bits (992), Expect = e-104
 Identities = 194/423 (45%), Positives = 267/423 (63%), Gaps = 10/423 (2%)
 Frame = +1

Query: 331  LEERLSEDQKQNNDTKNPEINVAKTGSKXXXXXXXXXXXXXXCSTKQSEWLLDSTSTFHI 510
            ++E      K+  + K+ +++VA   +               C     EW+LDS  +FHI
Sbjct: 242  IDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAG-CVAGHDEWILDSACSFHI 300

Query: 511  CTKREWFSSYEKLDTG-VVLVGNDNPCRIVGIGTIRFKLHDGMIRELTEVRHVPDMTHNL 687
            CTKR WFSSY+ +  G VV +G+DNPC IVGIG+++ K  DGM R L  VR++P M+ NL
Sbjct: 301  CTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNL 360

Query: 688  ISLGMLESKGFRVILENGVSKVLHGVLVVMRG-VRERNLYYLKGNAVLGDIPTANSVAKD 864
            ISL  L+++G++    +GV KV  G LV ++G +    LY L+G  + G    A +V  D
Sbjct: 361  ISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVTND 420

Query: 865  T---TRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEHCVLGKQTRVKFGTAIHRT 1035
                T LWHM L H     +  L+K+ LLKG T+ K+ FCEHC+ GK  RV+F T++H T
Sbjct: 421  EPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTT 480

Query: 1036 RGTLDYVHSDVWKPSRTASLGGK-----LVDEFSRRVWIYTMRHKDEVLEVFIRWKKLID 1200
            +GTLDYVH+D+W PS+  SLGG      ++D++SR+VW Y ++HKD+    F  WK +I+
Sbjct: 481  KGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIE 540

Query: 1201 TQTGRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTPQQNRVAKRMNRTLLEKVR 1380
             QT RK+K L +DNGGE+ S  F    + EGIVRH  +  TPQQN VA+RMNRT++ + R
Sbjct: 541  RQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRAR 600

Query: 1381 CMLSNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWSGKPAHDYDFLHVFGCPAY 1560
            CMLS+A + K FWA+  + AC+L+NR PS  +  KTP+EVWSG PA DY  L VFGC AY
Sbjct: 601  CMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPA-DYSQLKVFGCTAY 659

Query: 1561 FHV 1569
             HV
Sbjct: 660  AHV 662


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  386 bits (991), Expect = e-104
 Identities = 194/423 (45%), Positives = 267/423 (63%), Gaps = 10/423 (2%)
 Frame = +1

Query: 331  LEERLSEDQKQNNDTKNPEINVAKTGSKXXXXXXXXXXXXXXCSTKQSEWLLDSTSTFHI 510
            ++E      K+  + K+ +++VA   +               C     EW+LDS  +FHI
Sbjct: 242  IDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAG-CVAGHDEWILDSACSFHI 300

Query: 511  CTKREWFSSYEKLDTG-VVLVGNDNPCRIVGIGTIRFKLHDGMIRELTEVRHVPDMTHNL 687
            CTKR WFSSY+ +  G VV +G+DNPC IVGIG+++ K  DGM R L  VR++P M+ NL
Sbjct: 301  CTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNL 360

Query: 688  ISLGMLESKGFRVILENGVSKVLHGVLVVMRG-VRERNLYYLKGNAVLGDIPTANSVAKD 864
            ISL  L+++G++    +GV KV  G LV ++G +    LY L+G  + G    A +V  D
Sbjct: 361  ISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVTND 420

Query: 865  T---TRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEHCVLGKQTRVKFGTAIHRT 1035
                T LWHM L H     +  L+K+ LLKG T+ K+ FCEHC+ GK  RV+F T++H T
Sbjct: 421  EPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTT 480

Query: 1036 RGTLDYVHSDVWKPSRTASLGGK-----LVDEFSRRVWIYTMRHKDEVLEVFIRWKKLID 1200
            +GTLDYVH+D+W PS+  SLGG      ++D++SR+VW Y ++HKD+    F  WK +I+
Sbjct: 481  KGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIE 540

Query: 1201 TQTGRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTPQQNRVAKRMNRTLLEKVR 1380
             QT RK+K L +DNGGE+ S  F    + EGIVRH  +  TPQQN VA+RMNRT++ + R
Sbjct: 541  RQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRAR 600

Query: 1381 CMLSNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWSGKPAHDYDFLHVFGCPAY 1560
            CMLS+A + K FWA+  + AC+L+NR PS  +  KTP+EVWSG PA DY  L VFGC AY
Sbjct: 601  CMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMPA-DYSQLKVFGCTAY 659

Query: 1561 FHV 1569
             HV
Sbjct: 660  AHV 662


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  356 bits (913), Expect(2) = e-104
 Identities = 181/375 (48%), Positives = 244/375 (65%), Gaps = 8/375 (2%)
 Frame = +1

Query: 478  WLLDSTSTFHICTKREWFSSYEKLDTGVVLVGNDNPCRIVGIGTIRFKLHDGMIRELTEV 657
            W LD+  TFH C  R+WF +Y++ +T  VL+GND+P RI+GIG ++ ++HDG++R L  V
Sbjct: 263  WTLDTACTFHTCAHRDWFDTYKEGNTRSVLMGNDSPSRIMGIGMVKIRMHDGIVRALGNV 322

Query: 658  RHVPDMTHNLISLGMLESKGFRVILENGVSKVLHGVLVVMRG-VRERNLYYLKGNAVLGD 834
            RH P +  NLISL  ++  GF    +NGV KV  G +V M+G ++  N+Y L G+ V G 
Sbjct: 323  RHTPGLNRNLISLSTMDRVGFWHKGQNGVLKVGKGQMVYMKGAIQPDNMYKLTGSTVEGG 382

Query: 835  IPTANSVAKDTTRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEHCVLGKQTRVKF 1014
                    +D T LW   L H  ++ L  L K+  L G  +  L+FC +C LGKQTRV F
Sbjct: 383  AGVCTE--EDKTELWRRRLGHMSQRGLQELHKKEQLDGVMSAALEFCRYCTLGKQTRVSF 440

Query: 1015 G--TAIHRTRGTLDYVHSDVWKPSRTASLGG-----KLVDEFSRRVWIYTMRHKDEVLEV 1173
               ++ ++++G LDY+H+DVW PS T S GG       +D+FSR+VWI+ M+ K+EV   
Sbjct: 441  NLSSSENKSKGVLDYIHTDVWGPSATISKGGARYFVSFIDDFSRKVWIFFMKTKNEVFTK 500

Query: 1174 FIRWKKLIDTQTGRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTPQQNRVAKRM 1353
            F  WK  +  QTGRKIK L SDNGGEY+   FLQ+ +DEGI RHF V+++PQQN VA+RM
Sbjct: 501  FKEWKAEVGNQTGRKIKCLRSDNGGEYRDKKFLQLCKDEGITRHFTVKKSPQQNGVAERM 560

Query: 1354 NRTLLEKVRCMLSNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWSGKPAHDYDF 1533
            NRTL+EK R M  +AGL + FWA+   +AC+L+NR PS AI  K   EVWSGKP  DY  
Sbjct: 561  NRTLMEKERSMRFHAGLPEEFWAEAANHACYLINRSPSRAINFKCAEEVWSGKPV-DYSN 619

Query: 1534 LHVFGCPAYFHVKED 1578
            L VFGC AY H+ +D
Sbjct: 620  LRVFGCSAYAHIPKD 634



 Score = 52.4 bits (124), Expect(2) = e-104
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
 Frame = +2

Query: 11  RIDEVVKDEDRALLLLNSLPPEYEHFRTTLLYRKSIVAYTDVSTALLNNDLRKRKQLESK 190
           ++   + DED A++LL+SLPP ++HF+TT+++++ I     +S    N     R + E  
Sbjct: 108 KVGAKMDDEDTAVMLLHSLPPLFKHFKTTMIFKELIT----LSKVCENPKSYIRLEREED 163

Query: 191 DSSSEALVA----RGRTKDRYKPXXXXXXXXXXXXXXLARDECVFCYKSGHWKKDCPKIK 358
            S +  L      RGR+++R                   +D C       HWK++C + K
Sbjct: 164 SSQARGLYVRGKERGRSRNRGGGFQGRGMSKSKGKGKGKKDGCFIYGSPDHWKRNCKQWK 223

Query: 359 NK 364
            K
Sbjct: 224 EK 225


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
            gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
            Japonica Group]
          Length = 778

 Score =  385 bits (989), Expect = e-104
 Identities = 183/376 (48%), Positives = 252/376 (67%), Gaps = 8/376 (2%)
 Frame = +1

Query: 457  CSTKQSEWLLDSTSTFHICTKREWFSSYEKLDTGVVLVGNDNPCRIVGIGTIRFKLHDGM 636
            C+    +W+LD+  T+H+C  R+WF++YE +  G VL+G+D PC + GIGT++ K+ DG 
Sbjct: 259  CAQTSDQWILDTACTYHMCPNRDWFATYETVQGGTVLMGDDTPCEVAGIGTVQIKMFDGC 318

Query: 637  IRELTEVRHVPDMTHNLISLGMLESKGFRVILENGVSKVLHGVLVVMRG-VRERNLYYLK 813
            IR L++VRH+P++  +LIS   L+ KG++    +G+ KV  G LVVM+  ++  NLY+L+
Sbjct: 319  IRTLSDVRHIPNLKRSLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLR 378

Query: 814  GNAVLGDIPTANSVAK--DTTRLWHMCLAHAGEKSLYALVKQGLLKGATTCKLDFCEHCV 987
            G  +LG++   +      D T LWHM L H  E  L  L K+GLL G +  KL FCEHC+
Sbjct: 379  GTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLYGQSIGKLKFCEHCI 438

Query: 988  LGKQTRVKFGTAIHRTRGTLDYVHSDVWKPSRTASLGGK-----LVDEFSRRVWIYTMRH 1152
             GK  RVKF T+ H T G LDYVHSD+W P+R  S GG      +VD++SR+VW Y ++H
Sbjct: 439  FGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKH 498

Query: 1153 KDEVLEVFIRWKKLIDTQTGRKIKRLISDNGGEYKSDPFLQVYQDEGIVRHFIVRRTPQQ 1332
            K +  +VF  WK +++ QT RK+K L +DNG E+ S  F    + EGIVRH+ +  TPQQ
Sbjct: 499  KYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTIPHTPQQ 558

Query: 1333 NRVAKRMNRTLLEKVRCMLSNAGLGKAFWAKTLAYACHLVNRLPSAAIGGKTPLEVWSGK 1512
            N VA+RMNRT++ K RCMLSNAGL K FWA+ ++ AC+L+NR PS AI  KTP+EVWSG 
Sbjct: 559  NGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGS 618

Query: 1513 PAHDYDFLHVFGCPAY 1560
            P  +Y  L VFGC AY
Sbjct: 619  PV-NYSDLRVFGCTAY 633