BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia24_contig00013175
         (2035 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN69118.1| hypothetical protein VITISV_031845 [Vitis vinifera]   641   0.0  
gb|ADN34131.1| tRNA pseudouridine synthase family protein [Cucum...   602   e-169
gb|EXB88225.1| tRNA pseudouridine synthase A [Morus notabilis]        600   e-169
ref|XP_002510619.1| pseudouridylate synthase, putative [Ricinus ...   599   e-168
ref|XP_007154901.1| hypothetical protein PHAVU_003G157400g [Phas...   592   e-166
ref|XP_007154900.1| hypothetical protein PHAVU_003G157400g [Phas...   592   e-166
ref|XP_004157082.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudou...   589   e-165
ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mi...   589   e-165
ref|XP_002300673.2| hypothetical protein POPTR_0002s01580g [Popu...   573   e-160
ref|XP_006435279.1| hypothetical protein CICLE_v10000838mg [Citr...   568   e-159
ref|XP_006473737.1| PREDICTED: tRNA pseudouridine synthase A, mi...   561   e-157
ref|NP_001047686.1| Os02g0668400 [Oryza sativa Japonica Group] g...   535   e-149
gb|EEC73751.1| hypothetical protein OsI_08404 [Oryza sativa Indi...   535   e-149
gb|AFW72724.1| hypothetical protein ZEAMMB73_421497 [Zea mays]        525   e-146
ref|XP_002454502.1| hypothetical protein SORBIDRAFT_04g032290 [S...   525   e-146
gb|ACN28181.1| unknown [Zea mays] gi|413938174|gb|AFW72725.1| tR...   520   e-145
gb|EYU17545.1| hypothetical protein MIMGU_mgv1a003821mg [Mimulus...   520   e-144
ref|XP_004953401.1| PREDICTED: tRNA pseudouridine synthase A, mi...   520   e-144
ref|XP_006307113.1| hypothetical protein CARUB_v10008701mg [Caps...   518   e-144
ref|XP_002889060.1| tRNA pseudouridine synthase family protein [...   483   e-133

>emb|CAN69118.1| hypothetical protein VITISV_031845 [Vitis vinifera]
          Length = 559

 Score =  641 bits (1654), Expect = 0.0
 Identities = 337/546 (61%), Positives = 399/546 (73%), Gaps = 13/546 (2%)
 Frame = +1

Query: 241  FFAYCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSA 420
            FFAYCGVGYQGMQKNPGAKTIE DLEEALF SGAVPEQ+RG+ KR+DWARSARTDKGVSA
Sbjct: 32   FFAYCGVGYQGMQKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTDKGVSA 91

Query: 421  VGQVVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFAL 600
            VGQVVSGRFY+DPPGLV+RLNSNL  QIRIFGFKRVT +F+AKKFCDRRRYVYLIP FAL
Sbjct: 92   VGQVVSGRFYIDPPGLVERLNSNLPPQIRIFGFKRVTASFNAKKFCDRRRYVYLIPVFAL 151

Query: 601  DPCSHPDRETVLASVGSENELVKCLECSDRGRKVVGVMGKRSFEFRAL---------NSE 753
            DP SHPDRE+VLASVGSENELVKCLECS+RGRKVVG+MGKRSFE +            S+
Sbjct: 152  DPSSHPDRESVLASVGSENELVKCLECSERGRKVVGIMGKRSFESKVSVDDREDVEGESK 211

Query: 754  TVVDXXXXXXXXXXXXXXEVKAEVVVSLDNDHDDNSKSVQNQDTILSSDPMEVSSVTIED 933
             +V               EV+ E+  + +N++ D + S+      +  +  ++SS  ++ 
Sbjct: 212  NIVQLGIPSNDEAAIVNSEVQEEIKATSNNNNIDANNSISET---IKEEAAKLSS-EVDA 267

Query: 934  EEANAEEKLAKGSSSSEKIVMLXXXXXXXXXXXHSEVKDVM----DSLNNDDSLMSENET 1101
            E  N E  +++       I+              SE K+      D+ ++ +S+    + 
Sbjct: 268  EIINGENSISEPVKVGAAILK-------------SEAKEESMASSDNRHDGNSISQPIKE 314

Query: 1102 NKVLSNNGKSGMAVETMVCVQNEGTVLESDSMENDKVTVKDEEEKPARGSGFCYGEKEKV 1281
             +   +N  S    ++    QNE  V  S S ++DK      E K  +GSGFCYG+KE+ 
Sbjct: 315  GRCFQDNETSESTPDSRASAQNEPGV--SHSEQSDK-----GENKLEKGSGFCYGDKERE 367

Query: 1282 RFNRILNSYVGTHNFHNFTTRIKAEDPSAKRFIISFDAKTTVNVEGIEFVKCEVVGQSFM 1461
            RFNRIL  YVGTHNFHNFTTRIKAEDPSA+RFI+SFD  T V VEGIEFVKCEVVGQSFM
Sbjct: 368  RFNRILGHYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSFM 427

Query: 1462 LHQIRKMIGLAVAIMRNCAPESLIETALQKNVNITVPTAPEVGLYLDECFFTSYNNKWKD 1641
            LHQIRKMIGLAVAIMRN APESL+ETAL K+VNI VPTAPEVGLYLDECFF+SYN KW+D
Sbjct: 428  LHQIRKMIGLAVAIMRNVAPESLLETALLKDVNINVPTAPEVGLYLDECFFSSYNKKWRD 487

Query: 1642 THEEVSMKAYEDEAEEFKMKHIYPHIGSTENKEGSVALWLHSLNHRNYPDLRVVKDGITT 1821
            +HEEVSMKAY +EAEEFKMKH+Y HI +TE+KEG VALWLHSLNHRNYPDL +  +G  +
Sbjct: 488  SHEEVSMKAYAEEAEEFKMKHVYSHIAATEHKEGVVALWLHSLNHRNYPDLCIGDNGAAS 547

Query: 1822 DGKSAE 1839
            DGK+ E
Sbjct: 548  DGKNGE 553


>gb|ADN34131.1| tRNA pseudouridine synthase family protein [Cucumis melo subsp. melo]
          Length = 519

 Score =  602 bits (1551), Expect = e-169
 Identities = 324/526 (61%), Positives = 373/526 (70%), Gaps = 3/526 (0%)
 Frame = +1

Query: 241  FFAYCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSA 420
            FFAYCGVGYQGMQKNPGAKTIEADLEEAL+L+GAVPEQ+RG SKRYDWARSARTDKGVSA
Sbjct: 60   FFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDWARSARTDKGVSA 119

Query: 421  VGQVVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFAL 600
            VGQVVSGRFY+DPPG VDRLNSNL+ QIRIFG+KRVT +F+AKKFCDRRRYVYLIP FAL
Sbjct: 120  VGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFAL 179

Query: 601  DPCSHPDRETVLASVGSENELVKCLECSDRGRKVVGVMGKRSFEFRALNSETVVDXXXXX 780
            DP  H DRE+V AS+GS+NELVKCLECS+RGRKV G+MGKR+FE +   +E+        
Sbjct: 180  DPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLMGKRNFEVKTAITES-------- 231

Query: 781  XXXXXXXXXEVKAEVVVSLDNDHDDNSKSVQNQDTILSSDPMEVSSVTIED---EEANAE 951
                     ++ + +V ++  +  D   +   +D+  +SD  + +SV +E+   E   A 
Sbjct: 232  ---------DISSNIVNAI--EVSDVQANGVLEDSATTSDSNKQTSVLVENTATELTVAS 280

Query: 952  EKLAKGSSSSEKIVMLXXXXXXXXXXXHSEVKDVMDSLNNDDSLMSENETNKVLSNNGKS 1131
            E +AK  SS                         M  L ND  ++   E     S NGK 
Sbjct: 281  EGIAKSESSE------------------------MSGLGNDSEIVVSKE-----SVNGK- 310

Query: 1132 GMAVETMVCVQNEGTVLESDSMENDKVTVKDEEEKPARGSGFCYGEKEKVRFNRILNSYV 1311
                                             EKP+    F YGE+EK RFNRIL  YV
Sbjct: 311  ---------------------------------EKPS--GSFKYGEEEKARFNRILKHYV 335

Query: 1312 GTHNFHNFTTRIKAEDPSAKRFIISFDAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMIGL 1491
            GTHNFHNFTTR KAEDP+A+RFI+SFDA TTV VEGIEFVKCEVVGQSFMLHQIRKM+GL
Sbjct: 336  GTHNFHNFTTRTKAEDPAARRFIVSFDASTTVVVEGIEFVKCEVVGQSFMLHQIRKMMGL 395

Query: 1492 AVAIMRNCAPESLIETALQKNVNITVPTAPEVGLYLDECFFTSYNNKWKDTHEEVSMKAY 1671
            AVAIMRNCAPESLIE ALQK+VNI VPTAPEVGLYLDEC FTSYN KWKDTHEEVSMKAY
Sbjct: 396  AVAIMRNCAPESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAY 455

Query: 1672 EDEAEEFKMKHIYPHIGSTENKEGSVALWLHSLNHRNYPDLRVVKD 1809
            E+ AE+FKMK IY HI STE+K+G+VALWLHSLNHRNYPDLRV+ +
Sbjct: 456  EEVAEDFKMKQIYSHIASTEHKDGAVALWLHSLNHRNYPDLRVIDE 501


>gb|EXB88225.1| tRNA pseudouridine synthase A [Morus notabilis]
          Length = 621

 Score =  600 bits (1547), Expect = e-169
 Identities = 319/560 (56%), Positives = 392/560 (70%), Gaps = 27/560 (4%)
 Frame = +1

Query: 241  FFAYCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSA 420
            FFAYCGVGYQGMQKNPGAKTIE DLEEAL+LSGAVPEQ+R   KRYDWARSARTDKGVSA
Sbjct: 59   FFAYCGVGYQGMQKNPGAKTIEGDLEEALYLSGAVPEQDRYCPKRYDWARSARTDKGVSA 118

Query: 421  VGQVVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFAL 600
            VGQVVSGRFY+DPPGLV+RLNS L+ QIRIFG+KRVT +F+AKKFCDRRRYVYLIP FAL
Sbjct: 119  VGQVVSGRFYIDPPGLVERLNSKLSPQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFAL 178

Query: 601  DPCSHPDRETVLASVGSENELVKCLECSDRGRKVVGVMGKRSFEFRALNSETVVDXXXXX 780
            DP SHP+RE+VLAS+GSE+ELVKC+ECS+RGRKV G+MGKRS+E    + ++ +      
Sbjct: 179  DPSSHPNRESVLASLGSESELVKCVECSERGRKVPGLMGKRSYELTGASFDSGISLNICD 238

Query: 781  XXXXXXXXXEVKAEVVVSLDN------DHDDNSKSVQNQDTILSSD--PMEVSSVTIEDE 936
                     E    VV S+++      ++ D+  +  + D+ +SS+    +V SV   D 
Sbjct: 239  AKVDSVVSDE---NVVASINDIGEVKVENGDSETNHASFDSGISSNICDAKVDSVENGDS 295

Query: 937  EAN------------AEEKLAKGSSSSEKIVMLXXXXXXXXXXXHSEVKDVMDSLNNDDS 1080
            E N             + K+    +   ++  +            SE      +     +
Sbjct: 296  ETNRASFDLGISSNICDAKVDSVVTEENRVASVNGVGEVKVENGDSETNRASFNSGISSN 355

Query: 1081 LMSENETNKVLSNNGKSGMAVETMVCVQN---EGTVLESDSMENDKVTVKD----EEEKP 1239
            +      + V   NG + +  +  V V+N   E   +E  +++N+  T ++     E+KP
Sbjct: 356  ICDTKVVSVVRDENGVASVNGDGEVKVENGDSETNQVEGRTLDNEVSTGEEGNVNGEQKP 415

Query: 1240 ARGSGFCYGEKEKVRFNRILNSYVGTHNFHNFTTRIKAEDPSAKRFIISFDAKTTVNVEG 1419
             + S F YGEKE+ RFNRIL  Y GTHNFHNFTTR KAEDP+A+RFIISF+A T + VEG
Sbjct: 416  EKRSDFSYGEKERERFNRILKHYEGTHNFHNFTTRTKAEDPAAQRFIISFNANTVIPVEG 475

Query: 1420 IEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNCAPESLIETALQKNVNITVPTAPEVGLYL 1599
            +EFVKCEVVGQSFMLHQIRKMIGLAVAIMRNC PESL+E ALQK+VNI +PTAPEVGLYL
Sbjct: 476  MEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNCVPESLMENALQKDVNINIPTAPEVGLYL 535

Query: 1600 DECFFTSYNNKWKDTHEEVSMKAYEDEAEEFKMKHIYPHIGSTENKEGSVALWLHSLNHR 1779
            DEC F+SYN KWKD+HEE+SMKAY +EAEEFKMKHIY HIG TE KEG VALWLHSLN+R
Sbjct: 536  DECLFSSYNKKWKDSHEEMSMKAYAEEAEEFKMKHIYSHIGLTEQKEGVVALWLHSLNYR 595

Query: 1780 NYPDLRVVKDGITTDGKSAE 1839
            NYPD + V +  TT+  S +
Sbjct: 596  NYPDFQAVDNKNTTNNNSTD 615


>ref|XP_002510619.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223551320|gb|EEF52806.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 584

 Score =  599 bits (1545), Expect = e-168
 Identities = 327/541 (60%), Positives = 382/541 (70%), Gaps = 5/541 (0%)
 Frame = +1

Query: 241  FFAYCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSA 420
            FFAYCGVGYQGMQKNPGAKTIE DLEEALF SGAVPEQ+RG  KRYDWARSARTDKGVSA
Sbjct: 59   FFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVPEQDRGCPKRYDWARSARTDKGVSA 118

Query: 421  VGQVVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFAL 600
            VGQV+SGRFYVDPPGLVDRLNS L SQIRIFG+KRVT +F+AKKFCDRRRYVYLIP FAL
Sbjct: 119  VGQVISGRFYVDPPGLVDRLNSILPSQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFAL 178

Query: 601  DPCSHPDRETVLASVGSENELVKCLECSDRGRKVVGVMGKRSFEFRALNSETVVDXXXXX 780
            DP SH DRE+VLAS+GS +ELVKCLECS+RGRKV+G +GKRSFE ++   +T +      
Sbjct: 179  DPSSHRDRESVLASLGSGDELVKCLECSERGRKVIGAVGKRSFESKSEAFQTDI----LL 234

Query: 781  XXXXXXXXXEVKAEVVVSLDNDHDDNSKSVQNQDTILSSDPMEVSSVTIEDEEANAEEKL 960
                     E+K ++ +S+DN H     S   + T +S +         ED E  +    
Sbjct: 235  NGGCAIANCEIKEDISMSMDNAHGVRMHSEFVEQTNVSHN---------EDSETESAMPR 285

Query: 961  AKGSSSSEKIVMLXXXXXXXXXXXHSEVKDVMDSLNNDDSLMSENETNKVLSNNGKSGMA 1140
                S+SE                             D ++ S+++  +V+ +   +   
Sbjct: 286  TDILSNSE-----------------------------DGNVKSDSKQEEVMVSEDAA--- 313

Query: 1141 VETMVCVQNEGTVLESDSMEND-KVTVKDE----EEKPARGSGFCYGEKEKVRFNRILNS 1305
                     +G   ES++ME D K +V +E    EE   +GS FCYGE+EK +FNRIL  
Sbjct: 314  ---------DGGNKESETMEKDSKASVGEERVNGEEHVMKGSEFCYGEEEKEKFNRILKY 364

Query: 1306 YVGTHNFHNFTTRIKAEDPSAKRFIISFDAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMI 1485
            YVG+HNFHNFTTR KAEDPSA+R+IISFDA+TTV VEGIEFVKCEV+GQSFMLHQIRKMI
Sbjct: 365  YVGSHNFHNFTTRTKAEDPSAQRYIISFDARTTVTVEGIEFVKCEVIGQSFMLHQIRKMI 424

Query: 1486 GLAVAIMRNCAPESLIETALQKNVNITVPTAPEVGLYLDECFFTSYNNKWKDTHEEVSMK 1665
            GLAVAIMRNCAPESLI TALQK+V I VPTAPEVGLYLDECFFTSYN KWKD HEE+ MK
Sbjct: 425  GLAVAIMRNCAPESLISTALQKDVKINVPTAPEVGLYLDECFFTSYNQKWKD-HEELCMK 483

Query: 1666 AYEDEAEEFKMKHIYPHIGSTENKEGSVALWLHSLNHRNYPDLRVVKDGITTDGKSAEGV 1845
             YE+ AE+FKMK+IY HI STE KEG V LWLHSLN+RNYPDLR        + KS E V
Sbjct: 484  DYEEVAEDFKMKYIYSHIASTEQKEGVVGLWLHSLNYRNYPDLRFCYTLDANNEKSTEVV 543

Query: 1846 D 1848
            +
Sbjct: 544  N 544


>ref|XP_007154901.1| hypothetical protein PHAVU_003G157400g [Phaseolus vulgaris]
            gi|561028255|gb|ESW26895.1| hypothetical protein
            PHAVU_003G157400g [Phaseolus vulgaris]
          Length = 556

 Score =  592 bits (1525), Expect = e-166
 Identities = 317/538 (58%), Positives = 370/538 (68%), Gaps = 5/538 (0%)
 Frame = +1

Query: 241  FFAYCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSA 420
            FFAYCGVGYQGMQKNPGAKTIE DLEEAL++SGAVPE +RG  KRYDWARSARTDKGVSA
Sbjct: 28   FFAYCGVGYQGMQKNPGAKTIEGDLEEALYVSGAVPEHDRGIPKRYDWARSARTDKGVSA 87

Query: 421  VGQVVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFAL 600
            VGQVVSGRFY+DPPGLVDRLNSNL SQIRIFG+KRVT +F+AKKFCDRRRYVYLIP FAL
Sbjct: 88   VGQVVSGRFYIDPPGLVDRLNSNLHSQIRIFGYKRVTGSFNAKKFCDRRRYVYLIPVFAL 147

Query: 601  DPCSHPDRETVLASVGSENELVKCLECSDRGRKVVGVMG--KRSFEFRALNSETVVDXXX 774
            DPC H DRETV+AS+GS NELVKCLECS+RGRKVVG++G  K + E  A++ E  +    
Sbjct: 148  DPCCHRDRETVMASLGSTNELVKCLECSERGRKVVGLVGNRKHNLELEAMDVEAGISSNT 207

Query: 775  XXXXXXXXXXXEVKAEVVVSL---DNDHDDNSKSVQNQDTILSSDPMEVSSVTIEDEEAN 945
                        V  +V  SL   D++H +    + N+  +L              +  N
Sbjct: 208  DVVLDSV-----VTGDVEASLSKGDDNHLNGESGIDNKGKVLV-------------DGTN 249

Query: 946  AEEKLAKGSSSSEKIVMLXXXXXXXXXXXHSEVKDVMDSLNNDDSLMSENETNKVLSNNG 1125
             +  + KG    ++++ L                   +S+NN D +  E    +  S +G
Sbjct: 250  LKTGIEKGIPVQDEVMPLNG-----------------ESVNNSDIIEEEKMNGEDKSTSG 292

Query: 1126 KSGMAVETMVCVQNEGTVLESDSMENDKVTVKDEEEKPARGSGFCYGEKEKVRFNRILNS 1305
                   +M C                                  YGEKE+ RFN+ILN 
Sbjct: 293  -------SMFC----------------------------------YGEKERERFNKILNC 311

Query: 1306 YVGTHNFHNFTTRIKAEDPSAKRFIISFDAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMI 1485
            +VGTHNFHNFTTR KAEDP+A+R+IISF+A T   VEGIEFVKCEVVGQSFMLHQIRKM+
Sbjct: 312  FVGTHNFHNFTTRTKAEDPAARRYIISFNANTAFAVEGIEFVKCEVVGQSFMLHQIRKMM 371

Query: 1486 GLAVAIMRNCAPESLIETALQKNVNITVPTAPEVGLYLDECFFTSYNNKWKDTHEEVSMK 1665
            GLAVAIMRNCAPESLI  ALQ++VNI VPTAPEVGLYLDECFF+SYN KWKD+HEE+SMK
Sbjct: 372  GLAVAIMRNCAPESLINKALQQDVNINVPTAPEVGLYLDECFFSSYNQKWKDSHEELSMK 431

Query: 1666 AYEDEAEEFKMKHIYPHIGSTENKEGSVALWLHSLNHRNYPDLRVVKDGITTDGKSAE 1839
            AYE EAEEFKMK+IY HI  TE KEG+VALWLHSLNHRNYPDLRVV +   TD KSA+
Sbjct: 432  AYEKEAEEFKMKYIYSHISFTEQKEGTVALWLHSLNHRNYPDLRVVNEEAITDNKSAD 489


>ref|XP_007154900.1| hypothetical protein PHAVU_003G157400g [Phaseolus vulgaris]
            gi|593783723|ref|XP_007154902.1| hypothetical protein
            PHAVU_003G157400g [Phaseolus vulgaris]
            gi|561028254|gb|ESW26894.1| hypothetical protein
            PHAVU_003G157400g [Phaseolus vulgaris]
            gi|561028256|gb|ESW26896.1| hypothetical protein
            PHAVU_003G157400g [Phaseolus vulgaris]
          Length = 586

 Score =  592 bits (1525), Expect = e-166
 Identities = 317/538 (58%), Positives = 370/538 (68%), Gaps = 5/538 (0%)
 Frame = +1

Query: 241  FFAYCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSA 420
            FFAYCGVGYQGMQKNPGAKTIE DLEEAL++SGAVPE +RG  KRYDWARSARTDKGVSA
Sbjct: 58   FFAYCGVGYQGMQKNPGAKTIEGDLEEALYVSGAVPEHDRGIPKRYDWARSARTDKGVSA 117

Query: 421  VGQVVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFAL 600
            VGQVVSGRFY+DPPGLVDRLNSNL SQIRIFG+KRVT +F+AKKFCDRRRYVYLIP FAL
Sbjct: 118  VGQVVSGRFYIDPPGLVDRLNSNLHSQIRIFGYKRVTGSFNAKKFCDRRRYVYLIPVFAL 177

Query: 601  DPCSHPDRETVLASVGSENELVKCLECSDRGRKVVGVMG--KRSFEFRALNSETVVDXXX 774
            DPC H DRETV+AS+GS NELVKCLECS+RGRKVVG++G  K + E  A++ E  +    
Sbjct: 178  DPCCHRDRETVMASLGSTNELVKCLECSERGRKVVGLVGNRKHNLELEAMDVEAGISSNT 237

Query: 775  XXXXXXXXXXXEVKAEVVVSL---DNDHDDNSKSVQNQDTILSSDPMEVSSVTIEDEEAN 945
                        V  +V  SL   D++H +    + N+  +L              +  N
Sbjct: 238  DVVLDSV-----VTGDVEASLSKGDDNHLNGESGIDNKGKVLV-------------DGTN 279

Query: 946  AEEKLAKGSSSSEKIVMLXXXXXXXXXXXHSEVKDVMDSLNNDDSLMSENETNKVLSNNG 1125
             +  + KG    ++++ L                   +S+NN D +  E    +  S +G
Sbjct: 280  LKTGIEKGIPVQDEVMPLNG-----------------ESVNNSDIIEEEKMNGEDKSTSG 322

Query: 1126 KSGMAVETMVCVQNEGTVLESDSMENDKVTVKDEEEKPARGSGFCYGEKEKVRFNRILNS 1305
                   +M C                                  YGEKE+ RFN+ILN 
Sbjct: 323  -------SMFC----------------------------------YGEKERERFNKILNC 341

Query: 1306 YVGTHNFHNFTTRIKAEDPSAKRFIISFDAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMI 1485
            +VGTHNFHNFTTR KAEDP+A+R+IISF+A T   VEGIEFVKCEVVGQSFMLHQIRKM+
Sbjct: 342  FVGTHNFHNFTTRTKAEDPAARRYIISFNANTAFAVEGIEFVKCEVVGQSFMLHQIRKMM 401

Query: 1486 GLAVAIMRNCAPESLIETALQKNVNITVPTAPEVGLYLDECFFTSYNNKWKDTHEEVSMK 1665
            GLAVAIMRNCAPESLI  ALQ++VNI VPTAPEVGLYLDECFF+SYN KWKD+HEE+SMK
Sbjct: 402  GLAVAIMRNCAPESLINKALQQDVNINVPTAPEVGLYLDECFFSSYNQKWKDSHEELSMK 461

Query: 1666 AYEDEAEEFKMKHIYPHIGSTENKEGSVALWLHSLNHRNYPDLRVVKDGITTDGKSAE 1839
            AYE EAEEFKMK+IY HI  TE KEG+VALWLHSLNHRNYPDLRVV +   TD KSA+
Sbjct: 462  AYEKEAEEFKMKYIYSHISFTEQKEGTVALWLHSLNHRNYPDLRVVNEEAITDNKSAD 519


>ref|XP_004157082.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase A,
            mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  589 bits (1519), Expect = e-165
 Identities = 319/523 (60%), Positives = 370/523 (70%)
 Frame = +1

Query: 241  FFAYCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSA 420
            FFAYCGVGYQGMQKNPGAKTIEADLEEAL+L+GAVPEQ+RG SKRYDWARSARTDKGVSA
Sbjct: 60   FFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDWARSARTDKGVSA 119

Query: 421  VGQVVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFAL 600
            VGQVVSGRFY+DPPG VDRLNSNL+ QIRIFG+KRVT +F+AKKFCDRRRYVYLIP FAL
Sbjct: 120  VGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFAL 179

Query: 601  DPCSHPDRETVLASVGSENELVKCLECSDRGRKVVGVMGKRSFEFRALNSETVVDXXXXX 780
            DP  H DRE+V AS+GS+NELVKCLECS+RGRKV G++GKR+FE +   +E+        
Sbjct: 180  DPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLIGKRNFEVKTAITES-------- 231

Query: 781  XXXXXXXXXEVKAEVVVSLDNDHDDNSKSVQNQDTILSSDPMEVSSVTIEDEEANAEEKL 960
                     ++ +  V ++  +  D   +   +D+  +SD  + +SV +E    N   +L
Sbjct: 232  ---------DISSNTVNAI--EVSDVQANGVLEDSATTSDSNKQTSVLVE----NTATEL 276

Query: 961  AKGSSSSEKIVMLXXXXXXXXXXXHSEVKDVMDSLNNDDSLMSENETNKVLSNNGKSGMA 1140
              GS  + K                SE  + M  L +D  ++   E     S NGK    
Sbjct: 277  NVGSEGTAK----------------SESSE-MSGLGSDSEIVVSKE-----SVNGK---- 310

Query: 1141 VETMVCVQNEGTVLESDSMENDKVTVKDEEEKPARGSGFCYGEKEKVRFNRILNSYVGTH 1320
                                          EK +    F YGE+EK RFNRIL  YVGTH
Sbjct: 311  ------------------------------EKSS--GSFKYGEEEKARFNRILKHYVGTH 338

Query: 1321 NFHNFTTRIKAEDPSAKRFIISFDAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMIGLAVA 1500
            NFHNFTTR KAEDP+A+RFI+SFDA   V VEGIEFVKCEVVGQSFMLHQIRKM+GLAVA
Sbjct: 339  NFHNFTTRTKAEDPAARRFIVSFDASAIVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVA 398

Query: 1501 IMRNCAPESLIETALQKNVNITVPTAPEVGLYLDECFFTSYNNKWKDTHEEVSMKAYEDE 1680
            IMRNCAPESLIE ALQK+VNI VPTAPEVGLYLDEC FTSYN KWKDTHEEVSMKAYE+ 
Sbjct: 399  IMRNCAPESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEA 458

Query: 1681 AEEFKMKHIYPHIGSTENKEGSVALWLHSLNHRNYPDLRVVKD 1809
            AE+FKMK IY HI STE+K+G+VALWLHSLNHRNYPDLRV+ +
Sbjct: 459  AEDFKMKQIYSHIASTEHKDGAVALWLHSLNHRNYPDLRVIDE 501


>ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Cucumis
            sativus]
          Length = 519

 Score =  589 bits (1519), Expect = e-165
 Identities = 319/523 (60%), Positives = 370/523 (70%)
 Frame = +1

Query: 241  FFAYCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSA 420
            FFAYCGVGYQGMQKNPGAKTIEADLEEAL+L+GAVPEQ+RG SKRYDWARSARTDKGVSA
Sbjct: 60   FFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDWARSARTDKGVSA 119

Query: 421  VGQVVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFAL 600
            VGQVVSGRFY+DPPG VDRLNSNL+ QIRIFG+KRVT +F+AKKFCDRRRYVYLIP FAL
Sbjct: 120  VGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFAL 179

Query: 601  DPCSHPDRETVLASVGSENELVKCLECSDRGRKVVGVMGKRSFEFRALNSETVVDXXXXX 780
            DP  H DRE+V AS+GS+NELVKCLECS+RGRKV G++GKR+FE +   +E+        
Sbjct: 180  DPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLIGKRNFEVKTAITES-------- 231

Query: 781  XXXXXXXXXEVKAEVVVSLDNDHDDNSKSVQNQDTILSSDPMEVSSVTIEDEEANAEEKL 960
                     ++ +  V ++  +  D   +   +D+  +SD  + +SV +E    N   +L
Sbjct: 232  ---------DISSNTVNAI--EVSDVQANGVLEDSATTSDSNKQTSVLVE----NTATEL 276

Query: 961  AKGSSSSEKIVMLXXXXXXXXXXXHSEVKDVMDSLNNDDSLMSENETNKVLSNNGKSGMA 1140
              GS  + K                SE  + M  L +D  ++   E     S NGK    
Sbjct: 277  NVGSEGTAK----------------SESSE-MSGLGSDSEIVVSKE-----SVNGK---- 310

Query: 1141 VETMVCVQNEGTVLESDSMENDKVTVKDEEEKPARGSGFCYGEKEKVRFNRILNSYVGTH 1320
                                          EK +    F YGE+EK RFNRIL  YVGTH
Sbjct: 311  ------------------------------EKSS--GSFKYGEEEKARFNRILKHYVGTH 338

Query: 1321 NFHNFTTRIKAEDPSAKRFIISFDAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMIGLAVA 1500
            NFHNFTTR KAEDP+A+RFI+SFDA   V VEGIEFVKCEVVGQSFMLHQIRKM+GLAVA
Sbjct: 339  NFHNFTTRTKAEDPAARRFIVSFDASAIVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVA 398

Query: 1501 IMRNCAPESLIETALQKNVNITVPTAPEVGLYLDECFFTSYNNKWKDTHEEVSMKAYEDE 1680
            IMRNCAPESLIE ALQK+VNI VPTAPEVGLYLDEC FTSYN KWKDTHEEVSMKAYE+ 
Sbjct: 399  IMRNCAPESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEA 458

Query: 1681 AEEFKMKHIYPHIGSTENKEGSVALWLHSLNHRNYPDLRVVKD 1809
            AE+FKMK IY HI STE+K+G+VALWLHSLNHRNYPDLRV+ +
Sbjct: 459  AEDFKMKQIYSHIASTEHKDGAVALWLHSLNHRNYPDLRVIDE 501


>ref|XP_002300673.2| hypothetical protein POPTR_0002s01580g [Populus trichocarpa]
            gi|550344062|gb|EEE79946.2| hypothetical protein
            POPTR_0002s01580g [Populus trichocarpa]
          Length = 516

 Score =  573 bits (1476), Expect = e-160
 Identities = 317/533 (59%), Positives = 366/533 (68%)
 Frame = +1

Query: 241  FFAYCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSA 420
            FFAYCGVGYQGMQKNPGAKTIE DLEEALF +GAVPEQ+RG  KRYDWARSARTDKGVSA
Sbjct: 59   FFAYCGVGYQGMQKNPGAKTIEGDLEEALFHAGAVPEQDRGIPKRYDWARSARTDKGVSA 118

Query: 421  VGQVVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFAL 600
            VGQVVSGRFY+DPPGLV+RL+SNL+ Q RIFG+KRVT +F+AKKFCDRRR          
Sbjct: 119  VGQVVSGRFYIDPPGLVERLHSNLSPQFRIFGYKRVTGSFNAKKFCDRRR---------- 168

Query: 601  DPCSHPDRETVLASVGSENELVKCLECSDRGRKVVGVMGKRSFEFRALNSETVVDXXXXX 780
                    E+VLAS+ S +EL+KCLECS+RGRKV G +GKRSFE  A NS    D     
Sbjct: 169  --------ESVLASLRSGSELIKCLECSERGRKVAGAVGKRSFEL-ADNSSNDKDASVKS 219

Query: 781  XXXXXXXXXEVKAEVVVSLDNDHDDNSKSVQNQDTILSSDPMEVSSVTIEDEEANAEEKL 960
                     E+K EV V LDN  +D    ++N +T+                    E K+
Sbjct: 220  ---------EIKEEVGVLLDNGLED----IRNSETV-------------------NETKI 247

Query: 961  AKGSSSSEKIVMLXXXXXXXXXXXHSEVKDVMDSLNNDDSLMSENETNKVLSNNGKSGMA 1140
             +   S  K VM                          +S++S N  +  ++   K    
Sbjct: 248  FQNDGSGSKSVM-------------------------PESVISSNSEDANVNPESKD--- 279

Query: 1141 VETMVCVQNEGTVLESDSMENDKVTVKDEEEKPARGSGFCYGEKEKVRFNRILNSYVGTH 1320
             E +V V+N            D    K +EE   +GS FCYGEKEK RFNRIL  YVG+H
Sbjct: 280  -EIIVSVEN-----------GDDEKTKSKEEM-VKGSSFCYGEKEKERFNRILGYYVGSH 326

Query: 1321 NFHNFTTRIKAEDPSAKRFIISFDAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMIGLAVA 1500
            NFHNFTTR KAEDPSA+R+I+SF+AKTTVNVEGIEFVKCEVVGQSFMLHQIRKMIG+AVA
Sbjct: 327  NFHNFTTRTKAEDPSARRYIVSFEAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMIGVAVA 386

Query: 1501 IMRNCAPESLIETALQKNVNITVPTAPEVGLYLDECFFTSYNNKWKDTHEEVSMKAYEDE 1680
            IMRNCAPESLI+TALQK+VNI VPTAPEVGLYLDECFFTSYN KWKD+HEE+SMK YE+E
Sbjct: 387  IMRNCAPESLIQTALQKDVNINVPTAPEVGLYLDECFFTSYNQKWKDSHEEISMKDYEEE 446

Query: 1681 AEEFKMKHIYPHIGSTENKEGSVALWLHSLNHRNYPDLRVVKDGITTDGKSAE 1839
            AE+FKMKHIY HI +TE+KEGSVALWLHSLNHRNYPDLRV     T D  ++E
Sbjct: 447  AEDFKMKHIYSHIATTEHKEGSVALWLHSLNHRNYPDLRVSN---TVDNNNSE 496


>ref|XP_006435279.1| hypothetical protein CICLE_v10000838mg [Citrus clementina]
            gi|557537401|gb|ESR48519.1| hypothetical protein
            CICLE_v10000838mg [Citrus clementina]
          Length = 526

 Score =  568 bits (1465), Expect = e-159
 Identities = 308/530 (58%), Positives = 370/530 (69%), Gaps = 2/530 (0%)
 Frame = +1

Query: 241  FFAYCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSA 420
            FFAYCGVGYQGMQKNPGAKTIE DLEEALF SGAV E++RGN +RYDWARSARTDKGVSA
Sbjct: 65   FFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSA 124

Query: 421  VGQVVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFAL 600
            VGQVVSGRF +DPPGLV+RLNSNL +QIRIFG+KRVT +F+AKKFCD+RRYVYL+P FAL
Sbjct: 125  VGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184

Query: 601  DPCSHPDRETVLASVGSENELVKCLECSDRGRKVVGVMGKRSFEFRALNSETVVDXXXXX 780
            D  SH DRE+V+AS+GS NELVKCLECS+RGRKV+GVMGKR+++    +++         
Sbjct: 185  DSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSND--------- 235

Query: 781  XXXXXXXXXEVKAEVVVSLDND--HDDNSKSVQNQDTILSSDPMEVSSVTIEDEEANAEE 954
                     +VK + VVS  N   H+ N +SV++  TI         SV +E+  + +  
Sbjct: 236  --ENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTI-------SESVMVENANSESVN 286

Query: 955  KLAKGSSSSEKIVMLXXXXXXXXXXXHSEVKDVMDSLNNDDSLMSENETNKVLSNNGKSG 1134
            +    S +SE +              ++++   +DS  ND  +M+E       S NG+  
Sbjct: 287  ETLVESRTSETV-----------QNENTDLSLDLDS-KNDSKVMAEER-----SVNGEEK 329

Query: 1135 MAVETMVCVQNEGTVLESDSMENDKVTVKDEEEKPARGSGFCYGEKEKVRFNRILNSYVG 1314
            +   +  C                      EEEK               RFNRIL  YVG
Sbjct: 330  LLKGSGFCY--------------------GEEEKK--------------RFNRILKHYVG 355

Query: 1315 THNFHNFTTRIKAEDPSAKRFIISFDAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMIGLA 1494
            +HNFHNFTTR KAEDPSA+R+IISF A + VNVEGI+F+KCEVVGQSFMLHQIRKMIGLA
Sbjct: 356  SHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLA 415

Query: 1495 VAIMRNCAPESLIETALQKNVNITVPTAPEVGLYLDECFFTSYNNKWKDTHEEVSMKAYE 1674
            VA++RNCAPESLIETALQK+VNI VPTAPEVGLYLDEC F SYN KWKD+HEE+SMKAYE
Sbjct: 416  VAVVRNCAPESLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEELSMKAYE 475

Query: 1675 DEAEEFKMKHIYPHIGSTENKEGSVALWLHSLNHRNYPDLRVVKDGITTD 1824
            +EAE FKMKHI+ HI  TE KEG VALWLHSLN+RNYPDLR + +  + D
Sbjct: 476  EEAENFKMKHIFSHIARTEQKEGVVALWLHSLNYRNYPDLRFLGNDESAD 525


>ref|XP_006473737.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Citrus
            sinensis]
          Length = 526

 Score =  561 bits (1445), Expect = e-157
 Identities = 310/530 (58%), Positives = 365/530 (68%), Gaps = 2/530 (0%)
 Frame = +1

Query: 241  FFAYCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSA 420
            FFAYCGVGYQGMQKNPGAKTIE DLEEALF SGAV E++RGN +RYDWARSARTDKGVSA
Sbjct: 65   FFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSA 124

Query: 421  VGQVVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFAL 600
            VGQVVSGRF +DPPGLV+RLN NL +QIRIFG+KRVT +F+AKKFCD+RRYVYL+P FAL
Sbjct: 125  VGQVVSGRFCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184

Query: 601  DPCSHPDRETVLASVGSENELVKCLECSDRGRKVVGVMGKRSFEFRALNSETVVDXXXXX 780
            D  SH DRE+V+AS+GS NELVKCLECS+RGRKV+GVMGKR+++    +++         
Sbjct: 185  DSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSND--------- 235

Query: 781  XXXXXXXXXEVKAEVVVSLDND--HDDNSKSVQNQDTILSSDPMEVSSVTIEDEEANAEE 954
                     +VK + VVS  N   H+ N +SV++  TI  S  +         E AN+E 
Sbjct: 236  --ENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESAMV---------ENANSE- 283

Query: 955  KLAKGSSSSEKIVMLXXXXXXXXXXXHSEVKDVMDSLNNDDSLMSENETNKVLSNNGKSG 1134
                  S +E +V              S   + + + N D SL  +       S N    
Sbjct: 284  ------SVNETLV-------------ESRTSETVQNENTDLSLDLD-------SKNDSKV 317

Query: 1135 MAVETMVCVQNEGTVLESDSMENDKVTVKDEEEKPARGSGFCYGEKEKVRFNRILNSYVG 1314
            MA E    V  E  +L+             EEEK               RFNRIL  YVG
Sbjct: 318  MAEER--SVNGEEKLLKGSGF------CYGEEEKK--------------RFNRILKHYVG 355

Query: 1315 THNFHNFTTRIKAEDPSAKRFIISFDAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMIGLA 1494
            +HNFHNFTTR KAEDPSA+R+IISF A + VNVEGI+F+KCEVVGQSFMLHQIRKMIGLA
Sbjct: 356  SHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLA 415

Query: 1495 VAIMRNCAPESLIETALQKNVNITVPTAPEVGLYLDECFFTSYNNKWKDTHEEVSMKAYE 1674
            VA++RNCAP+SLIETALQK+VNI VPTAPEVGLYLDEC F SYN KWKD+HEE+SMKAYE
Sbjct: 416  VAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEELSMKAYE 475

Query: 1675 DEAEEFKMKHIYPHIGSTENKEGSVALWLHSLNHRNYPDLRVVKDGITTD 1824
            +EAE FKMKHI+ HI  TE KEG VALWLHSLN+RNYPDL  + +    D
Sbjct: 476  EEAENFKMKHIFSHITRTEQKEGVVALWLHSLNYRNYPDLHFLGNDEAAD 525


>ref|NP_001047686.1| Os02g0668400 [Oryza sativa Japonica Group]
            gi|50251324|dbj|BAD28300.1| putative pseudouridine
            synthase 1 [Oryza sativa Japonica Group]
            gi|50252138|dbj|BAD28134.1| putative pseudouridine
            synthase 1 [Oryza sativa Japonica Group]
            gi|113537217|dbj|BAF09600.1| Os02g0668400 [Oryza sativa
            Japonica Group]
          Length = 581

 Score =  535 bits (1378), Expect = e-149
 Identities = 290/538 (53%), Positives = 356/538 (66%), Gaps = 5/538 (0%)
 Frame = +1

Query: 250  YCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSAVGQ 429
            YCG GYQGMQKNPGA+TIE DLEEAL+ +GAVPE +R   +RYDWAR+ARTDKGVSA  Q
Sbjct: 57   YCGAGYQGMQKNPGARTIEGDLEEALYRAGAVPEADRAAPRRYDWARAARTDKGVSAAAQ 116

Query: 430  VVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFALDPC 609
            VVSGRFYVDPP   DRLN+ LA QIR FG+ RVT +F+AKKFCDRRRYVYL+P FALDP 
Sbjct: 117  VVSGRFYVDPPVFTDRLNAQLAPQIRAFGYVRVTNSFNAKKFCDRRRYVYLLPVFALDPS 176

Query: 610  SHPDRETVLASVGSENELVKCLECSDRGRKVVGVMGKRS-FEFRALNSETVVDXXXXXXX 786
            +HPDRE V+ASVGS +EL KCLECS+RGRKV GVMG+       AL  E  V+       
Sbjct: 177  AHPDREAVMASVGSGSELTKCLECSERGRKVPGVMGREGKVPDPALQEEKSVEAS----- 231

Query: 787  XXXXXXXEVKAEVVVSLDNDHDDNSKSVQNQDTILSSDPMEVSSVTIEDEEANAEEKLAK 966
                     + E  V  + D + +  S  ++   L           I D E N +    +
Sbjct: 232  ---------REEAAVGSNEDANCDPASTGDRSVDLP----------IPDNETNTQITEMR 272

Query: 967  GSSSSEKIVMLXXXXXXXXXXXHSEVKDVMDSLNNDDSLMSENETNKVLSNNGKSGMAVE 1146
             + + +  V L            S  + V   LN+D +  S++          K G ++E
Sbjct: 273  SNGAEKCDVQLSGGTLCSEAVPASNSETVCPILNSDSNTNSDSVDVDPSFVAEKKG-SIE 331

Query: 1147 TMVCVQNEGTVLESDSMENDKVTVKDE----EEKPARGSGFCYGEKEKVRFNRILNSYVG 1314
            T+V    +   ++  + +  K  V  E    EE P R S F Y  + K RFNRIL  YVG
Sbjct: 332  TVVTEDGKKQAMDVVTEDEKKQDVDYEGSSLEEMPLR-SAFSYTHEVKERFNRILKKYVG 390

Query: 1315 THNFHNFTTRIKAEDPSAKRFIISFDAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMIGLA 1494
            THNFHNFTTR KAEDP+AKRFIISF A   VN++GI+F++CEVVGQSFMLHQIRKMIGLA
Sbjct: 391  THNFHNFTTRTKAEDPAAKRFIISFAADRVVNLDGIDFIRCEVVGQSFMLHQIRKMIGLA 450

Query: 1495 VAIMRNCAPESLIETALQKNVNITVPTAPEVGLYLDECFFTSYNNKWKDTHEEVSMKAYE 1674
            VA+MRNCAPES+ + A +K+VN+ VPTAPEVGLYLDEC FTSYN KWKD+HE VSM+ Y 
Sbjct: 451  VAVMRNCAPESIYDVAFRKDVNLNVPTAPEVGLYLDECMFTSYNKKWKDSHEAVSMEPYS 510

Query: 1675 DEAEEFKMKHIYPHIGSTENKEGSVALWLHSLNHRNYPDLRVVKDGITTDGKSAEGVD 1848
            +EAEEFK+K+I+PHI + E+KEG+VALWLHSLN RNYPD R + D   T+   A  V+
Sbjct: 511  EEAEEFKLKYIFPHIAAMEHKEGAVALWLHSLNSRNYPDFRYM-DNAGTEASIAAAVE 567


>gb|EEC73751.1| hypothetical protein OsI_08404 [Oryza sativa Indica Group]
          Length = 581

 Score =  535 bits (1377), Expect = e-149
 Identities = 290/539 (53%), Positives = 357/539 (66%), Gaps = 6/539 (1%)
 Frame = +1

Query: 250  YCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSAVGQ 429
            YCG GYQGMQKNPGA+TIE DLEEAL+ +GAVPE +R   +RYDWAR+ARTDKGVSA  Q
Sbjct: 57   YCGAGYQGMQKNPGARTIEGDLEEALYRAGAVPEADRAAPRRYDWARAARTDKGVSAAAQ 116

Query: 430  VVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFALDPC 609
            VVSGRFYVDPP   DRLN+ LA QIR FG+ RVT +F+AKKFCDRRRYVYL+P FALDP 
Sbjct: 117  VVSGRFYVDPPVFTDRLNAQLAPQIRAFGYVRVTNSFNAKKFCDRRRYVYLLPVFALDPS 176

Query: 610  SHPDRETVLASVGSENELVKCLECSDRGRKVVGVMGKRS-FEFRALNSETVVDXXXXXXX 786
            +HPDRE V+ASVGS +EL KCLECS+RGRKV GVMG+       AL  E  V+       
Sbjct: 177  AHPDREAVMASVGSGSELTKCLECSERGRKVPGVMGREGKVPDPALQEEKSVEAS----- 231

Query: 787  XXXXXXXEVKAEVVVSLDNDHDDNSKSVQNQDTILSSDPMEVSSVTIEDEEANAEE---K 957
                     + E  V  + D + +  S  ++   L     E ++   E     AE+   +
Sbjct: 232  ---------REEAAVGSNEDANCDPASTGDRSVDLPIPDNETNTQITEMRSNGAEKCDVQ 282

Query: 958  LAKGSSSSEKIVMLXXXXXXXXXXXHSEVKDVMDSLNNDDSLMSENETN--KVLSNNGKS 1131
            L+ G+  SE +               S      DS++ D S ++E + +   V++ +GK 
Sbjct: 283  LSGGTLCSEAVPASISETVCPILNSDSNTNS--DSVDVDPSFVAEKKGSIETVVTEDGKK 340

Query: 1132 GMAVETMVCVQNEGTVLESDSMENDKVTVKDEEEKPARGSGFCYGEKEKVRFNRILNSYV 1311
                      Q    V E +  ++        EE P R S F Y  + K RFNRIL  YV
Sbjct: 341  ----------QAMDVVTEDEKKQDVDYEGSSLEEMPLR-SAFSYTHEVKERFNRILKKYV 389

Query: 1312 GTHNFHNFTTRIKAEDPSAKRFIISFDAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMIGL 1491
            GTHNFHNFTTR KAEDP+AKRFIISF A   VN++GI+F++CEVVGQSFMLHQIRKMIGL
Sbjct: 390  GTHNFHNFTTRTKAEDPAAKRFIISFAADRVVNLDGIDFIRCEVVGQSFMLHQIRKMIGL 449

Query: 1492 AVAIMRNCAPESLIETALQKNVNITVPTAPEVGLYLDECFFTSYNNKWKDTHEEVSMKAY 1671
            AVA+MRNCAPES+ + A +K+VN+ VPTAPEVGLYLDEC FTSYN KWKD+HE VSM+ Y
Sbjct: 450  AVAVMRNCAPESIYDVAFRKDVNLNVPTAPEVGLYLDECMFTSYNKKWKDSHEAVSMEPY 509

Query: 1672 EDEAEEFKMKHIYPHIGSTENKEGSVALWLHSLNHRNYPDLRVVKDGITTDGKSAEGVD 1848
             +EAEEFK+K+I+PHI + E+KEG+VALWLHSLN RNYPD R + D   T+   A  V+
Sbjct: 510  SEEAEEFKLKYIFPHIAAMEHKEGAVALWLHSLNSRNYPDFRYM-DNAGTEASIAAAVE 567


>gb|AFW72724.1| hypothetical protein ZEAMMB73_421497 [Zea mays]
          Length = 565

 Score =  525 bits (1353), Expect = e-146
 Identities = 281/532 (52%), Positives = 351/532 (65%)
 Frame = +1

Query: 250  YCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSAVGQ 429
            YCG GYQGMQKNPGA+TIE DLEEAL+ +GAVPE +R   +RYDWAR+ARTDKGVSA  Q
Sbjct: 60   YCGAGYQGMQKNPGARTIEGDLEEALYQAGAVPEADRSAPRRYDWARAARTDKGVSAAAQ 119

Query: 430  VVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFALDPC 609
            VVSGRFYVDPPG +DRLN+ LA QIR +G+ RVT +F+AKKFCDRRRY+YL+P FALDP 
Sbjct: 120  VVSGRFYVDPPGFIDRLNAQLAPQIRAYGYVRVTNSFNAKKFCDRRRYLYLLPVFALDPS 179

Query: 610  SHPDRETVLASVGSENELVKCLECSDRGRKVVGVMGKRSFEFRALNSETVVDXXXXXXXX 789
            +HPDRE V+AS+GS +EL KCLECS+RGRK+ GVMG+                       
Sbjct: 180  AHPDREAVMASMGSGSELTKCLECSERGRKIPGVMGREG-------------------KL 220

Query: 790  XXXXXXEVKAEVVVSLDNDHDDNSKSVQNQDTILSSDPMEVSSVTIEDEEANAEEKLAKG 969
                   V A V  S    HD++      +    SSD          +  A+ E     G
Sbjct: 221  PSPGQNGVDAPVEGS---SHDESGTLGDAKCDHTSSDG--------NNPFAHGEV----G 265

Query: 970  SSSSEKIVMLXXXXXXXXXXXHSEVKDVMDSLNNDDSLMSENETNKVLSNNGKSGMAVET 1149
            S+S EK                +EV +     N D +++S  + +  + N  K       
Sbjct: 266  SNSKEK-------PDLPVSGDRTEVANAKMGSNGDGAVVSSADADIYIGNEEKK------ 312

Query: 1150 MVCVQNEGTVLESDSMENDKVTVKDEEEKPARGSGFCYGEKEKVRFNRILNSYVGTHNFH 1329
               ++   T  ++  ME++K+   + EEK    S F Y ++ K RFNRIL  Y+GTHNFH
Sbjct: 313  ---LEPAATENKAQGMESEKI---NGEEKLPTKSTFSYTDEVKERFNRILKYYIGTHNFH 366

Query: 1330 NFTTRIKAEDPSAKRFIISFDAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMR 1509
            NFTTR KAEDP+AKRFIISF A   V+++GI+FV+CEVVGQSFMLHQIRKMIGLAVA+MR
Sbjct: 367  NFTTRTKAEDPAAKRFIISFAADRVVSLDGIDFVRCEVVGQSFMLHQIRKMIGLAVAVMR 426

Query: 1510 NCAPESLIETALQKNVNITVPTAPEVGLYLDECFFTSYNNKWKDTHEEVSMKAYEDEAEE 1689
            NCAPES+ + A +K+VN+ VPTAPEVGLYLDEC FTSYN KWKD+HE VSM+ Y +EAEE
Sbjct: 427  NCAPESIYDVAFRKDVNLNVPTAPEVGLYLDECMFTSYNKKWKDSHEAVSMEPYSEEAEE 486

Query: 1690 FKMKHIYPHIGSTENKEGSVALWLHSLNHRNYPDLRVVKDGITTDGKSAEGV 1845
            FK+K+I+ HI + E+KEG+VALWLHSLNHRNYPD R ++      G   E +
Sbjct: 487  FKVKYIFTHIAAMEHKEGAVALWLHSLNHRNYPDFRYMETAEHNPGAEVESI 538


>ref|XP_002454502.1| hypothetical protein SORBIDRAFT_04g032290 [Sorghum bicolor]
            gi|241934333|gb|EES07478.1| hypothetical protein
            SORBIDRAFT_04g032290 [Sorghum bicolor]
          Length = 567

 Score =  525 bits (1352), Expect = e-146
 Identities = 280/533 (52%), Positives = 353/533 (66%)
 Frame = +1

Query: 250  YCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSAVGQ 429
            YCG GYQGMQKNPGA+TIE DLEEAL+ +GAVPE +R   +RYDWAR+ARTDKGVSA  Q
Sbjct: 60   YCGAGYQGMQKNPGARTIEGDLEEALYQAGAVPEADRAAPRRYDWARAARTDKGVSAAAQ 119

Query: 430  VVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFALDPC 609
            VVSGRFYVDPPG +DRLN+ LASQIR +G+ RVT +FSAKKFCDRRRY+YL+P FALDP 
Sbjct: 120  VVSGRFYVDPPGFIDRLNAQLASQIRAYGYVRVTNSFSAKKFCDRRRYLYLLPVFALDPS 179

Query: 610  SHPDRETVLASVGSENELVKCLECSDRGRKVVGVMGKRSFEFRALNSETVVDXXXXXXXX 789
            +HPDRE V+AS+GS +EL KCLECS+RGRKV GVMG+                       
Sbjct: 180  AHPDREAVMASMGSGSELTKCLECSERGRKVPGVMGREG-----------------KLPS 222

Query: 790  XXXXXXEVKAEVVVSLDNDHDDNSKSVQNQDTILSSDPMEVSSVTIEDEEANAEEKLAKG 969
                  +  AE  V+    HD++          L     + +S    +  A+ E     G
Sbjct: 223  PGQNGVDASAEGSVA---SHDESG--------TLGDAKCDHTSPDGGNPCAHGE----VG 267

Query: 970  SSSSEKIVMLXXXXXXXXXXXHSEVKDVMDSLNNDDSLMSENETNKVLSNNGKSGMAVET 1149
            S+S EK+ +             +EV +     N    ++   + +  + N  K       
Sbjct: 268  SNSKEKLDL-------PVSGDGTEVANAETGSNGGGDVVPSADADIYIGNEEKK------ 314

Query: 1150 MVCVQNEGTVLESDSMENDKVTVKDEEEKPARGSGFCYGEKEKVRFNRILNSYVGTHNFH 1329
               ++   T  ++  M+++K    + EEK    S F Y ++ K RFNRIL  YVGTHNFH
Sbjct: 315  ---LEPVATEEKAQGMDSEK---SNGEEKLPTKSAFSYTDEVKERFNRILKYYVGTHNFH 368

Query: 1330 NFTTRIKAEDPSAKRFIISFDAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMR 1509
            NFTTR KAEDP+AKRFIISF A   V+++GI+FV+CEVVGQSFMLHQIRKMIGLAVA+MR
Sbjct: 369  NFTTRTKAEDPAAKRFIISFGADRVVSLDGIDFVRCEVVGQSFMLHQIRKMIGLAVAVMR 428

Query: 1510 NCAPESLIETALQKNVNITVPTAPEVGLYLDECFFTSYNNKWKDTHEEVSMKAYEDEAEE 1689
            NCAPE++ + A +K+VN+ VPTAPEVGLYLDEC FTSYN KWKD+HE VSM+ Y +EAEE
Sbjct: 429  NCAPETIYDVAFRKDVNLNVPTAPEVGLYLDECMFTSYNKKWKDSHEAVSMEPYYEEAEE 488

Query: 1690 FKMKHIYPHIGSTENKEGSVALWLHSLNHRNYPDLRVVKDGITTDGKSAEGVD 1848
            FK+K+I+PHI + E+KEG+VALWLHSLNHRNYPD R ++      G   + +D
Sbjct: 489  FKVKYIFPHIAAMEHKEGAVALWLHSLNHRNYPDFRYMETAEPKVGAEVKSID 541


>gb|ACN28181.1| unknown [Zea mays] gi|413938174|gb|AFW72725.1| tRNA pseudouridine
            synthase family protein [Zea mays]
          Length = 562

 Score =  520 bits (1340), Expect = e-145
 Identities = 281/532 (52%), Positives = 351/532 (65%)
 Frame = +1

Query: 250  YCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSAVGQ 429
            YCG GYQGMQKNPGA+TIE DLEEAL+ +GAVPE +R   +RYDWAR+ARTDKGVSA  Q
Sbjct: 60   YCGAGYQGMQKNPGARTIEGDLEEALYQAGAVPEADRSAPRRYDWARAARTDKGVSAAAQ 119

Query: 430  VVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFALDPC 609
            VVSGRFYVDPPG +DRLN+ LA QIR +G+ RVT +F+AKKFCDRRRY+YL+P FALDP 
Sbjct: 120  VVSGRFYVDPPGFIDRLNAQLAPQIRAYGYVRVTNSFNAKKFCDRRRYLYLLPVFALDPS 179

Query: 610  SHPDRETVLASVGSENELVKCLECSDRGRKVVGVMGKRSFEFRALNSETVVDXXXXXXXX 789
            +HPDRE V+AS+GS +EL KCLECS+RGRK+ GVMG+                       
Sbjct: 180  AHPDREAVMASMGSGSELTKCLECSERGRKIPGVMGREG-------------------KL 220

Query: 790  XXXXXXEVKAEVVVSLDNDHDDNSKSVQNQDTILSSDPMEVSSVTIEDEEANAEEKLAKG 969
                   V A V  S    HD++      +    SSD          +  A+ E     G
Sbjct: 221  PSPGQNGVDAPVEGS---SHDESGTLGDAKCDHTSSDG--------NNPFAHGE----VG 265

Query: 970  SSSSEKIVMLXXXXXXXXXXXHSEVKDVMDSLNNDDSLMSENETNKVLSNNGKSGMAVET 1149
            S+S EK                +EV +     N D +++S   ++  + N  K       
Sbjct: 266  SNSKEK-------PDLPVSGDRTEVANAKMGSNGDGAVVS---SDIYIGNEEKK------ 309

Query: 1150 MVCVQNEGTVLESDSMENDKVTVKDEEEKPARGSGFCYGEKEKVRFNRILNSYVGTHNFH 1329
               ++   T  ++  ME++K+   + EEK    S F Y ++ K RFNRIL  Y+GTHNFH
Sbjct: 310  ---LEPAATENKAQGMESEKI---NGEEKLPTKSTFSYTDEVKERFNRILKYYIGTHNFH 363

Query: 1330 NFTTRIKAEDPSAKRFIISFDAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMR 1509
            NFTTR KAEDP+AKRFIISF A   V+++GI+FV+CEVVGQSFMLHQIRKMIGLAVA+MR
Sbjct: 364  NFTTRTKAEDPAAKRFIISFAADRVVSLDGIDFVRCEVVGQSFMLHQIRKMIGLAVAVMR 423

Query: 1510 NCAPESLIETALQKNVNITVPTAPEVGLYLDECFFTSYNNKWKDTHEEVSMKAYEDEAEE 1689
            NCAPES+ + A +K+VN+ VPTAPEVGLYLDEC FTSYN KWKD+HE VSM+ Y +EAEE
Sbjct: 424  NCAPESIYDVAFRKDVNLNVPTAPEVGLYLDECMFTSYNKKWKDSHEAVSMEPYSEEAEE 483

Query: 1690 FKMKHIYPHIGSTENKEGSVALWLHSLNHRNYPDLRVVKDGITTDGKSAEGV 1845
            FK+K+I+ HI + E+KEG+VALWLHSLNHRNYPD R ++      G   E +
Sbjct: 484  FKVKYIFTHIAAMEHKEGAVALWLHSLNHRNYPDFRYMETAEHNPGAEVESI 535


>gb|EYU17545.1| hypothetical protein MIMGU_mgv1a003821mg [Mimulus guttatus]
          Length = 562

 Score =  520 bits (1339), Expect = e-144
 Identities = 283/546 (51%), Positives = 357/546 (65%), Gaps = 10/546 (1%)
 Frame = +1

Query: 241  FFAYCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSA 420
            FFAYCGVGYQGMQKNPGAKTIE DLEEAL+LSGA+PE+ERG  KRY+WARSARTDKGVSA
Sbjct: 51   FFAYCGVGYQGMQKNPGAKTIEGDLEEALYLSGAIPEEERGLHKRYEWARSARTDKGVSA 110

Query: 421  VGQVVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFAL 600
            VGQVVSGRFYVDPPG ++RL+S+L+ QIRIFG+KRVTP+F+AKKFCDRRRY         
Sbjct: 111  VGQVVSGRFYVDPPGFIERLHSHLSPQIRIFGYKRVTPSFNAKKFCDRRRY--------- 161

Query: 601  DPCSHPDRETVLASVGSENELVKCLECSDRGRKVVGVMGK-RSFEFRALNSETVVDXXXX 777
                                   CLECS+RGRKV GVMGK R+FE +A       +    
Sbjct: 162  -----------------------CLECSERGRKVFGVMGKQRNFESKAPGEGENENVEVG 198

Query: 778  XXXXXXXXXXEVKAEVVVSLDNDHDDNSKSVQNQDTILSSDPMEVSSVTIEDEEANAEEK 957
                        +++ V     + +  S  + N  +  + + +  +S+   +  +N  E 
Sbjct: 199  SGISSNNGTGSFESKDV---GENVEVGSGILSNNGSPPTDEKVVANSLENNEIGSNGSEN 255

Query: 958  LAKGSSSSEKI-----VMLXXXXXXXXXXXHSEVKDVMDS----LNNDDSLMSENETNKV 1110
            ++ G++  +K+     V++             E K V+DS    + N D     +ET K+
Sbjct: 256  VSIGAAQDDKMEVDKAVLVDSAILSDNVSVLDESKTVVDSSEKGIENTDLENGSSETEKL 315

Query: 1111 LSNNGKSGMAVETMVCVQNEGTVLESDSMENDKVTVKDEEEKPARGSGFCYGEKEKVRFN 1290
            L    +S         ++        D +E++      E EK    S FCYGE+EK RFN
Sbjct: 316  LETGDES---------IEKRNV----DKLESENANGHTEAEKK---SEFCYGEEEKARFN 359

Query: 1291 RILNSYVGTHNFHNFTTRIKAEDPSAKRFIISFDAKTTVNVEGIEFVKCEVVGQSFMLHQ 1470
            RIL  Y GTHNFHNFTTR KAEDP+A+R+I+SF+A T VNV+GI+FVKCEVVGQSFMLHQ
Sbjct: 360  RILKFYEGTHNFHNFTTRTKAEDPAARRYILSFNANTVVNVDGIDFVKCEVVGQSFMLHQ 419

Query: 1471 IRKMIGLAVAIMRNCAPESLIETALQKNVNITVPTAPEVGLYLDECFFTSYNNKWKDTHE 1650
            IRKMIGLAVA+MRN  PES +ETA  ++V   VP APEVGLYLDECFF+SYNNKWKD+HE
Sbjct: 420  IRKMIGLAVAMMRNITPESKMETAFLQSVRFNVPMAPEVGLYLDECFFSSYNNKWKDSHE 479

Query: 1651 EVSMKAYEDEAEEFKMKHIYPHIGSTENKEGSVALWLHSLNHRNYPDLRVVKDGITTDGK 1830
            EVSMKAY +E+EEFKMK+IYPH+ S+E+K+G+VALWLHSLN+RN+PDLR       +DG 
Sbjct: 480  EVSMKAYAEESEEFKMKYIYPHVASSEHKDGAVALWLHSLNYRNFPDLRAADSEPVSDGN 539

Query: 1831 SAEGVD 1848
              E V+
Sbjct: 540  GTEIVN 545


>ref|XP_004953401.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Setaria
            italica]
          Length = 538

 Score =  520 bits (1338), Expect = e-144
 Identities = 283/519 (54%), Positives = 342/519 (65%)
 Frame = +1

Query: 250  YCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSAVGQ 429
            YCG GYQGMQKNPGA+TIE DLEEAL+ +GAVPE +R   +RYDWAR+ARTDKGVSA  Q
Sbjct: 55   YCGAGYQGMQKNPGARTIEGDLEEALYQAGAVPEADRAAPRRYDWARAARTDKGVSAAAQ 114

Query: 430  VVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFALDPC 609
            VVSGRFYVDPPG +DRLN+ LA QI  +G+ RVT +FSAKKFCDRRRY+YL+P FALDP 
Sbjct: 115  VVSGRFYVDPPGFIDRLNAQLAPQIHAYGYVRVTNSFSAKKFCDRRRYLYLLPVFALDPS 174

Query: 610  SHPDRETVLASVGSENELVKCLECSDRGRKVVGVMGKRSFEFRALNSETVVDXXXXXXXX 789
            +HPDRE V+AS+GS +EL KCLECS+RGRKV GVMG+       L S  V          
Sbjct: 175  AHPDREAVMASMGSGSELTKCLECSERGRKVPGVMGREG----KLPSPGV---------- 220

Query: 790  XXXXXXEVKAEVVVSLDNDHDDNSKSVQNQDTILSSDPMEVSSVTIEDEEANAEEKLAKG 969
                  +   E  V   N HD++             DP    +V+ E +  NAE     G
Sbjct: 221  ---NGTDAPVEGTV---NTHDESGSI-----GAAKGDP----TVSEETQAGNAE----LG 261

Query: 970  SSSSEKIVMLXXXXXXXXXXXHSEVKDVMDSLNNDDSLMSENETNKVLSNNGKSGMAVET 1149
            S+ +                      DV+ S + D      NE NK+             
Sbjct: 262  SNGA---------------------SDVVPSGSADADASIGNEENKL------------- 287

Query: 1150 MVCVQNEGTVLESDSMENDKVTVKDEEEKPARGSGFCYGEKEKVRFNRILNSYVGTHNFH 1329
                  E T  E + ++       + EEKP   S F Y ++ K RFNRIL  YVGTHNFH
Sbjct: 288  ------EATATE-EKVQGMDFENSNGEEKPPTKSDFSYNDEMKERFNRILKYYVGTHNFH 340

Query: 1330 NFTTRIKAEDPSAKRFIISFDAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMR 1509
            NFTTR KAEDP+AKRFIISF A   V+++GI+FV+CEVVGQSFMLHQIRKMIGLAVA+MR
Sbjct: 341  NFTTRTKAEDPAAKRFIISFAADRVVSLDGIDFVRCEVVGQSFMLHQIRKMIGLAVAVMR 400

Query: 1510 NCAPESLIETALQKNVNITVPTAPEVGLYLDECFFTSYNNKWKDTHEEVSMKAYEDEAEE 1689
            NCAPES+ + A +K+V + VPTAPEVGLYLDEC FTSYN KWKD+HE VSM+ Y +EAEE
Sbjct: 401  NCAPESIYDVAFRKDVKLNVPTAPEVGLYLDECMFTSYNKKWKDSHEAVSMEPYCEEAEE 460

Query: 1690 FKMKHIYPHIGSTENKEGSVALWLHSLNHRNYPDLRVVK 1806
            FK+K+I+PHI + E+KEG+VALWLHSLNHRNYPD R ++
Sbjct: 461  FKVKYIFPHIAAMEHKEGAVALWLHSLNHRNYPDFRYME 499


>ref|XP_006307113.1| hypothetical protein CARUB_v10008701mg [Capsella rubella]
            gi|482575824|gb|EOA40011.1| hypothetical protein
            CARUB_v10008701mg [Capsella rubella]
          Length = 574

 Score =  518 bits (1335), Expect = e-144
 Identities = 285/525 (54%), Positives = 345/525 (65%), Gaps = 7/525 (1%)
 Frame = +1

Query: 244  FAYCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSAV 423
            FA+CGVGYQGMQKNPGAKTIE +LEEALF +GAVPE +R   + Y+WARSARTDKGVSAV
Sbjct: 64   FAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPEADRNKPRSYEWARSARTDKGVSAV 123

Query: 424  GQVVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFALD 603
            GQVVSGRFYVDPPG V+RLNSNL  QIR+FG+KRV P+FS+KKFCDRRRYVYLIP FALD
Sbjct: 124  GQVVSGRFYVDPPGFVERLNSNLPDQIRVFGYKRVAPSFSSKKFCDRRRYVYLIPVFALD 183

Query: 604  PCSHPDRETVLASVGSENELVKCLECSDRGRKV-VGVMGK------RSFEFRALNSETVV 762
            PC H + E V   +G E   VKC+ECS+ G K+ VGVMGK      +S E ++  S +  
Sbjct: 184  PCVHSEAEMVRTDLGYE--YVKCVECSENGYKIPVGVMGKDTDCDAKSLEIQSDISHSNC 241

Query: 763  DXXXXXXXXXXXXXXEVKAEVVVSLDNDHDDNSKSVQNQDTILSSDPMEVSSVTIEDEEA 942
            D              +VK+E +          S SV N D  L+S+ ++ + V       
Sbjct: 242  DSLGID---------DVKSEAL----------SSSVSNGDDNLNSEVLDGADVAARV--- 279

Query: 943  NAEEKLAKGSSSSEKIVMLXXXXXXXXXXXHSEVKDVMDSLNNDDSLMSENETNKVLSNN 1122
               E+    SS SE                       M+ LN D S              
Sbjct: 280  -VTEETPDSSSKSED----------------------MEELNLDSSK------------- 303

Query: 1123 GKSGMAVETMVCVQNEGTVLESDSMENDKVTVKDEEEKPARGSGFCYGEKEKVRFNRILN 1302
                                ESD++   K  +K++E +      FCYGEKEK RFNRIL+
Sbjct: 304  --------------------ESDTLA--KGEMKNKERRDMTEGNFCYGEKEKERFNRILS 341

Query: 1303 SYVGTHNFHNFTTRIKAEDPSAKRFIISFDAKTTVNVEGIEFVKCEVVGQSFMLHQIRKM 1482
             YVG+HNFHNFTTR KA DP+A R+I+SF+A T +N++G +FVKCEVVGQSFMLHQIRKM
Sbjct: 342  YYVGSHNFHNFTTRTKAADPAANRYILSFNANTVINLDGKDFVKCEVVGQSFMLHQIRKM 401

Query: 1483 IGLAVAIMRNCAPESLIETALQKNVNITVPTAPEVGLYLDECFFTSYNNKWKDTHEEVSM 1662
            IGLAVA+MRN APE+LIETA +K+V I VP APEVGLYLDECFFTSYN ++K +HEEVSM
Sbjct: 402  IGLAVAVMRNYAPETLIETAFKKDVRINVPMAPEVGLYLDECFFTSYNKRFKGSHEEVSM 461

Query: 1663 KAYEDEAEEFKMKHIYPHIGSTENKEGSVALWLHSLNHRNYPDLR 1797
            + Y++ AEEFK KH+Y HIGS E K+G+VA+WLHSLNHRNYPDLR
Sbjct: 462  EEYKEVAEEFKWKHVYSHIGSAEEKDGAVAIWLHSLNHRNYPDLR 506


>ref|XP_002889060.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297334901|gb|EFH65319.1| tRNA pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 458

 Score =  483 bits (1243), Expect = e-133
 Identities = 273/522 (52%), Positives = 332/522 (63%), Gaps = 5/522 (0%)
 Frame = +1

Query: 244  FAYCGVGYQGMQKNPGAKTIEADLEEALFLSGAVPEQERGNSKRYDWARSARTDKGVSAV 423
            FA+CGVGYQGMQKNPGAKTIE +LEEALF +GAVPE  RG  K YD+ARSARTDKGVSAV
Sbjct: 28   FAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSARTDKGVSAV 87

Query: 424  GQVVSGRFYVDPPGLVDRLNSNLASQIRIFGFKRVTPAFSAKKFCDRRRYVYLIPAFALD 603
            GQVVSGRF VDPPG VDRLNSNL +QIRIFG+K VTP+FS+KKFCDRRRYVYL+P FALD
Sbjct: 88   GQVVSGRFNVDPPGFVDRLNSNLPNQIRIFGYKHVTPSFSSKKFCDRRRYVYLLPVFALD 147

Query: 604  PCSHPDRETVLASVGSENELVKCLECSDRGRKVVGVMGKRSFEFRALNSETVVDXXXXXX 783
            P SH DRETV+AS+G   E VKC ECS+RGRK+ G++G     ++  N            
Sbjct: 148  PISHRDRETVMASLGPGEEYVKCFECSERGRKIPGLVG----NWKGTNF----------- 192

Query: 784  XXXXXXXXEVKAEVVVSLDNDHD---DNSKSVQNQDTI--LSSDPMEVSSVTIEDEEANA 948
                         V  SLD   D   +NS +++    I  LSS+   +SSV +E      
Sbjct: 193  -------------VTKSLDFQSDILSNNSSALRTDVKIEALSSNLASLSSVDVE------ 233

Query: 949  EEKLAKGSSSSEKIVMLXXXXXXXXXXXHSEVKDVMDSLNNDDSLMSENETNKVLSNNGK 1128
                                               + S+  D   ++ N T K+   NG+
Sbjct: 234  -----------------------------------VGSIQEDSCKLNTNSTEKI---NGE 255

Query: 1129 SGMAVETMVCVQNEGTVLESDSMENDKVTVKDEEEKPARGSGFCYGEKEKVRFNRILNSY 1308
              +  ET                   K    ++E++       CY           + SY
Sbjct: 256  GNVMAET-----------------KSKFCYGEKEKERFNRILSCY-----------VGSY 287

Query: 1309 VGTHNFHNFTTRIKAEDPSAKRFIISFDAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMIG 1488
                NFHNFTTR KA+DP+A R IISF A T +N++GI+F+KCEV+G+SFMLHQIRKM+G
Sbjct: 288  ----NFHNFTTRTKADDPAANRQIISFTANTVINLDGIDFIKCEVLGKSFMLHQIRKMMG 343

Query: 1489 LAVAIMRNCAPESLIETALQKNVNITVPTAPEVGLYLDECFFTSYNNKWKDTHEEVSMKA 1668
            LAVAIMRNCA ESLI+TA  K+VNITVP APEVGLYLDECFFTSYN K++D+HEEVSM+A
Sbjct: 344  LAVAIMRNCASESLIQTAFSKDVNITVPMAPEVGLYLDECFFTSYNKKFEDSHEEVSMEA 403

Query: 1669 YEDEAEEFKMKHIYPHIGSTENKEGSVALWLHSLNHRNYPDL 1794
            Y++EAE FK+KHIY HI +TE K G++ALWLHSLN+RNYPDL
Sbjct: 404  YKEEAEAFKLKHIYSHICATERKYGNMALWLHSLNYRNYPDL 445