BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia24_contig00012010
         (1914 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHE41669.1| RNA polymerase beta' subunit (chloroplast) [Paeon...  1231   0.0  
gb|ABQ15073.1| RNA polymerase beta' subunit [Paeonia brownii]        1121   0.0  
gb|AHE41658.1| RNA polymerase beta' subunit, partial (chloroplas...  1034   0.0  
ref|YP_008963681.1| RNA polymerase beta' subunit (chloroplast) [...  1029   0.0  
gb|ABV65753.1| RNA polymerase beta'' subunit (chloroplast) [Liqu...  1022   0.0  
gb|AHE41666.1| RNA polymerase beta' subunit, partial (chloroplas...  1018   0.0  
gb|AHE41653.1| RNA polymerase beta' subunit (chloroplast) [Hamam...  1018   0.0  
gb|AHE41660.1| RNA polymerase beta' subunit, partial (chloroplas...  1014   0.0  
gb|AHE41656.1| RNA polymerase beta' subunit (chloroplast) [Daphn...   995   0.0  
gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berb...   985   0.0  
ref|YP_008963470.1| RNA polymerase beta' subunit (chloroplast) [...   979   0.0  
gb|AHE41657.1| RNA polymerase beta' subunit (chloroplast) [Itea ...   962   0.0  
gb|ABV65740.1| RNA polymerase beta'' subunit (chloroplast) [Heuc...   960   0.0  
gb|ABV65738.1| RNA polymerase beta'' subunit (chloroplast) [Gunn...   959   0.0  
gb|ABQ15060.1| RNA polymerase beta' subunit [Cercidiphyllum japo...   959   0.0  
gb|AFK81289.1| RNA polymerase beta' subunit [Camellia sinensis v...   954   0.0  
gb|ABD93804.1| RNA polymerase beta chain [Hamamelis mollis]           953   0.0  
gb|AHE41655.1| RNA polymerase beta' subunit, partial (chloroplas...   952   0.0  
ref|YP_008592747.1| DNA-directed RNA polymerase beta'' subunit (...   952   0.0  
gb|AHE41654.1| RNA polymerase beta' subunit (chloroplast) [Ribes...   952   0.0  

>gb|AHE41669.1| RNA polymerase beta' subunit (chloroplast) [Paeonia obovata]
          Length = 1392

 Score = 1231 bits (3186), Expect = 0.0
 Identities = 619/637 (97%), Positives = 620/637 (97%)
 Frame = -3

Query: 1912 QNNQHVESEQVIAEIRAGAYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 1733
            QNNQHVESEQVIAEIRAGAYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL
Sbjct: 414  QNNQHVESEQVIAEIRAGAYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 473

Query: 1732 PKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERKSISSLSLTNDQVRHKLFRSD 1553
            PKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERK ISSLSLTNDQVRHKLFRSD
Sbjct: 474  PKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERKYISSLSLTNDQVRHKLFRSD 533

Query: 1552 LSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYLLAKRRGNRFIIPFQSIRERE 1373
            LSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYLLAKRRGNRFIIPFQSIRERE
Sbjct: 534  LSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYLLAKRRGNRFIIPFQSIRERE 593

Query: 1372 KEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRNSSGITKYGTVEAHSLVKKED 1193
            KEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRNSSGITKYGTVEAHSLVKKED
Sbjct: 594  KEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRNSSGITKYGTVEAHSLVKKED 653

Query: 1192 LVEYRGVKEFKPKYQTKVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTRIALNIRSRVG 1013
            LVEYRGVKEFKPKYQ KVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTRIALNIRSRVG
Sbjct: 654  LVEYRGVKEFKPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTRIALNIRSRVG 713

Query: 1012 GLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPPGVGKTESKKWKSGIYIQRIT 833
            GLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPPGVGKTESKKWKSGIYIQRIT
Sbjct: 714  GLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPPGVGKTESKKWKSGIYIQRIT 773

Query: 832  PTKKRHFILVRPVVTYEITDGINLATPFPGDLLQERDNMKLRVVNYILRGNGKPIWGISD 653
            PTKKRHFILVRPVVTYEITDGINLATPF GDLLQERDNMKLRVVNYILRGNGKPI GISD
Sbjct: 774  PTKKRHFILVRPVVTYEITDGINLATPFQGDLLQERDNMKLRVVNYILRGNGKPIGGISD 833

Query: 652  TSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVEVRINGLIRDFLRIDLVQSPIMCTGKR 473
            TSIQLVRTCLVLNWDQDEK           SFVEVRINGLIRDFLRIDLVQSPIMC GKR
Sbjct: 834  TSIQLVRTCLVLNWDQDEKSSSAGEACACASFVEVRINGLIRDFLRIDLVQSPIMCPGKR 893

Query: 472  NDPSGSGLISDNGSDCTTINPFYSKAKARIKQSLSQNQGTIRTLLNKNKECQSLIILSSS 293
            NDPSGSGLISDNGSDCTTINPFYSKA+ARIKQSLSQNQGTIRTLLNKNKECQSLIILSSS
Sbjct: 894  NDPSGSGLISDNGSDCTTINPFYSKARARIKQSLSQNQGTIRTLLNKNKECQSLIILSSS 953

Query: 292  NCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIFQVANIYFLRTQNRILITKYL 113
            NC RMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIFQVANIYFLRTQNRILITKYL
Sbjct: 954  NCSRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIFQVANIYFLRTQNRILITKYL 1013

Query: 112  QLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 2
            QLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN
Sbjct: 1014 QLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 1050


>gb|ABQ15073.1| RNA polymerase beta' subunit [Paeonia brownii]
          Length = 862

 Score = 1121 bits (2900), Expect = 0.0
 Identities = 566/597 (94%), Positives = 569/597 (95%)
 Frame = -3

Query: 1792 HWSTDVYHAPEFTYGNVHLLPKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERK 1613
            HWSTDVYHAPEFTYGNVHLLPKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVE+K
Sbjct: 1    HWSTDVYHAPEFTYGNVHLLPKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVEQK 60

Query: 1612 SISSLSLTNDQVRHKLFRSDLSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYL 1433
            SISSLSLTNDQVRHKLFRSDLSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYL
Sbjct: 61   SISSLSLTNDQVRHKLFRSDLSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYL 120

Query: 1432 LAKRRGNRFIIPFQSIREREKEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRN 1253
            LAKRR NRFIIPFQSIREREKEQPPHSDSGSSIEI IPINGIFRRNSI AYFDDPRYRRN
Sbjct: 121  LAKRRRNRFIIPFQSIREREKEQPPHSDSGSSIEIPIPINGIFRRNSILAYFDDPRYRRN 180

Query: 1252 SSGITKYGTVEAHSLVKKEDLVEYRGVKEFKPKYQTKVDRFFFIPEEVHILPGSSSIMVR 1073
            SSGITKYGTVEAHSLVKKEDLVEYRGVKEFKPKYQ KVDRFFFIPEEVHILPGSSSIMVR
Sbjct: 181  SSGITKYGTVEAHSLVKKEDLVEYRGVKEFKPKYQMKVDRFFFIPEEVHILPGSSSIMVR 240

Query: 1072 NNSIIGIDTRIALNIRSRVGGLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPP 893
            NNSIIGIDTRIALNIRSRVGGLVRVERQKKKIELKIFSGDIYFPGEIDKIARH GILIPP
Sbjct: 241  NNSIIGIDTRIALNIRSRVGGLVRVERQKKKIELKIFSGDIYFPGEIDKIARHXGILIPP 300

Query: 892  GVGKTESKKWKSGIYIQRITPTKKRHFILVRPVVTYEITDGINLATPFPGDLLQERDNMK 713
            G GKT+SKKWKSGIY QRITPTKKRHF LVRPVV YEI DGINLATPFPGDLLQERDNMK
Sbjct: 301  GAGKTKSKKWKSGIYXQRITPTKKRHFXLVRPVVXYEIXDGINLATPFPGDLLQERDNMK 360

Query: 712  LRVVNYILRGNGKPIWGISDTSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVEVRINGL 533
            LRVVNYILRGNGKPI GISDTSIQLVRTCLVLNWDQDEK           SFVEVRINGL
Sbjct: 361  LRVVNYILRGNGKPILGISDTSIQLVRTCLVLNWDQDEK--SSSAGEACASFVEVRINGL 418

Query: 532  IRDFLRIDLVQSPIMCTGKRNDPSGSGLISDNGSDCTTINPFYSKAKARIKQSLSQNQGT 353
            IRDFLRIDLVQ PIMCTGKRNDPSGSGLISDNGSDCTTI PFYSKAKARIKQSLSQNQGT
Sbjct: 419  IRDFLRIDLVQPPIMCTGKRNDPSGSGLISDNGSDCTTITPFYSKAKARIKQSLSQNQGT 478

Query: 352  IRTLLNKNKECQSLIILSSSNCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIF 173
            IRTLLNKNKECQSLIILSSSNC RMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGT+F
Sbjct: 479  IRTLLNKNKECQSLIILSSSNCSRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTLF 538

Query: 172  QVANIYFLRTQNRILITKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 2
            QVANI FLRTQNRIL  KYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN
Sbjct: 539  QVANISFLRTQNRILKKKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 595


>gb|AHE41658.1| RNA polymerase beta' subunit, partial (chloroplast) [Cercidiphyllum
            japonicum]
          Length = 1372

 Score = 1034 bits (2673), Expect = 0.0
 Identities = 532/644 (82%), Positives = 570/644 (88%), Gaps = 7/644 (1%)
 Frame = -3

Query: 1912 QNNQHVESEQVIAEIRAGAYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 1733
            QN+Q++ESEQVIAEIRAG YT NFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL
Sbjct: 395  QNDQYIESEQVIAEIRAGTYTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 454

Query: 1732 PKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERKSISSLSLTNDQVRHKLFRSD 1553
            PKTSHLW+LSGGSC SS+VPFSLHKDQDQ++ HS+SVER+ IS+LS+TNDQVRHKLF SD
Sbjct: 455  PKTSHLWILSGGSCRSSVVPFSLHKDQDQMSVHSLSVERRYISNLSVTNDQVRHKLFSSD 514

Query: 1552 LSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYLLAKRRGNRFIIPFQSIRERE 1373
            LS   KKEGGIPNYSELNRII TGHCNLIYPAIL ENS LLAKRR NRFIIPFQSI+ERE
Sbjct: 515  LS--GKKEGGIPNYSELNRIICTGHCNLIYPAILRENSDLLAKRRRNRFIIPFQSIQERE 572

Query: 1372 KEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRNSSGITKYGTVEAHSLVKKED 1193
            KEQ  HSDSG SIEI  PINGIFRRNSI AYFDDPRYRRNSSGITKYGT+E HS+VKKED
Sbjct: 573  KEQMSHSDSGISIEI--PINGIFRRNSILAYFDDPRYRRNSSGITKYGTIEVHSIVKKED 630

Query: 1192 LVEYRGVKEFKPKYQTKVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTRIALNIRSRVG 1013
            L+EYRGVKEFKP+YQ KVDRFFFIPEEVHILPGSSSIMVRNNSIIG+DTRI LN RSRVG
Sbjct: 631  LIEYRGVKEFKPRYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTRITLNTRSRVG 690

Query: 1012 GLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPPGVGK---TESKKWKSGIYIQ 842
            GLVRVER+KK+IELKIFSGDIYFPGE DKIARHSGILIPPG GK    ESKK K+ IY+Q
Sbjct: 691  GLVRVERKKKRIELKIFSGDIYFPGETDKIARHSGILIPPGTGKKNSKESKKLKNWIYVQ 750

Query: 841  RITPTKKRHFILVRPVVTYEITDGINLATPFPGDLLQERDNMKLRVVNYILRGNGKPIWG 662
            RITPTKK++F+LVRPVVTYEI DGINLAT FP DLLQERDNMKLRVVNYIL GNGKPI G
Sbjct: 751  RITPTKKKYFVLVRPVVTYEIADGINLATXFPQDLLQERDNMKLRVVNYILYGNGKPIRG 810

Query: 661  ISDTSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVEVRINGLIRDFLRIDLVQSPIMCT 482
            ISDTSIQLVRTCLVLNWDQD+K           SFVEVR NGLIRDFLRIDLV+SPI  T
Sbjct: 811  ISDTSIQLVRTCLVLNWDQDKK--SSSIGEAHASFVEVRTNGLIRDFLRIDLVKSPISYT 868

Query: 481  GKRNDPSGSGLISDNGSDCTTINPFYSK-AKARIKQSLSQNQGTIRTLLNKNKECQSLII 305
            GKRNDPSGSGLI DNGSD T INPFYS  +KARI+QSLSQNQGTIRTLLN+NKECQSLII
Sbjct: 869  GKRNDPSGSGLIYDNGSDRTNINPFYSTYSKARIQQSLSQNQGTIRTLLNRNKECQSLII 928

Query: 304  LSSSNCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIFQVAN---IYFLRTQNR 134
            LSSSNC RMG FN+VKYHNVIKESIKR+PLIPIR  LGPLGT  Q+ N    Y L T N+
Sbjct: 929  LSSSNCSRMGLFNDVKYHNVIKESIKRDPLIPIRNSLGPLGTALQIVNFYSFYHLITHNQ 988

Query: 133  ILITKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 2
            IL+TKYLQL+NLKQTF++L Y LMDE+G IYNPDPC  SNIILN
Sbjct: 989  ILVTKYLQLDNLKQTFQVLNYYLMDENGIIYNPDPC--SNIILN 1030


>ref|YP_008963681.1| RNA polymerase beta' subunit (chloroplast) [Liquidambar formosana]
            gi|491650361|gb|AGL13421.1| RNA polymerase beta' subunit
            (chloroplast) [Liquidambar formosana]
          Length = 1390

 Score = 1029 bits (2660), Expect = 0.0
 Identities = 526/644 (81%), Positives = 571/644 (88%), Gaps = 7/644 (1%)
 Frame = -3

Query: 1912 QNNQHVESEQVIAEIRAGAYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 1733
            QN+Q+VESEQVIAEIRAG YT NFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL
Sbjct: 413  QNDQYVESEQVIAEIRAGTYTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 472

Query: 1732 PKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERKSISSLSLTNDQVRHKLFRSD 1553
            PKTSHLW+LSGGSC SS+VPFSLHKDQDQ+N HS+SVER+ IS+LS+TNDQVRHKLF SD
Sbjct: 473  PKTSHLWILSGGSCRSSVVPFSLHKDQDQMNVHSLSVERRYISNLSVTNDQVRHKLFSSD 532

Query: 1552 LSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYLLAKRRGNRFIIPFQSIRERE 1373
            +S   KKEGGIP+YSELNRII +GHCNLIYPAIL ENSYLLAKRR NRFIIPFQSI+ERE
Sbjct: 533  IS--GKKEGGIPDYSELNRIICSGHCNLIYPAILRENSYLLAKRRRNRFIIPFQSIQERE 590

Query: 1372 KEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRNSSGITKYGTVEAHSLVKKED 1193
            KEQ PHS+SG SIEI  PINGIFRRNSI AYFDDPRYRR SSGITKYGT+E HS+VKKED
Sbjct: 591  KEQMPHSNSGISIEI--PINGIFRRNSILAYFDDPRYRRKSSGITKYGTIEVHSIVKKED 648

Query: 1192 LVEYRGVKEFKPKYQTKVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTRIALNIRSRVG 1013
            L+E RGVKEFKP+YQ KVDRFFFIPEEVHILPGS SIMVRNNSIIG+DT+I LN RSRVG
Sbjct: 649  LIECRGVKEFKPRYQMKVDRFFFIPEEVHILPGSYSIMVRNNSIIGVDTQITLNTRSRVG 708

Query: 1012 GLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPPGVGKT---ESKKWKSGIYIQ 842
            GLVRVER+KK+IELKIFSGDI+FPGE +KIARHSGILIPPG GKT   ESKK+K+ IY+Q
Sbjct: 709  GLVRVERKKKRIELKIFSGDIHFPGETNKIARHSGILIPPGTGKTNSKESKKFKNWIYVQ 768

Query: 841  RITPTKKRHFILVRPVVTYEITDGINLATPFPGDLLQERDNMKLRVVNYILRGNGKPIWG 662
            RITPTKK+HF+LVRP VTYEI DGINLAT FP DLLQERDNMKLRVVNYIL GNGKPI G
Sbjct: 769  RITPTKKKHFVLVRPAVTYEIADGINLATLFPQDLLQERDNMKLRVVNYILYGNGKPIRG 828

Query: 661  ISDTSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVEVRINGLIRDFLRIDLVQSPIMCT 482
            ISDTSIQLVRTCLVLNWDQD+K           SFVEVR NGLIR+FLRI+L +SPI  T
Sbjct: 829  ISDTSIQLVRTCLVLNWDQDKK--SASSGEAHASFVEVRTNGLIRNFLRINLAESPISYT 886

Query: 481  GKRNDPSGSGLISDNGSDCTTINPFYSK-AKARIKQSLSQNQGTIRTLLNKNKECQSLII 305
            GKRNDPSGSG ISDNGSD T INPFYS  +K RI+QSLSQNQGTIRTLLN+NKECQSLII
Sbjct: 887  GKRNDPSGSGWISDNGSDRTNINPFYSTYSKERIQQSLSQNQGTIRTLLNRNKECQSLII 946

Query: 304  LSSSNCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIFQVAN---IYFLRTQNR 134
            LSSSNC RMGPFN+VKYHNVIKESIKR+PLIPIR  LGPLGT  Q+AN    Y L T N+
Sbjct: 947  LSSSNCSRMGPFNDVKYHNVIKESIKRDPLIPIRNSLGPLGTALQIANFYSFYHLITHNK 1006

Query: 133  ILITKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 2
            IL+TKYLQL+NLKQTF++L Y LMDE+GRIYNPDPC  SNIILN
Sbjct: 1007 ILVTKYLQLDNLKQTFQVLNYYLMDENGRIYNPDPC--SNIILN 1048


>gb|ABV65753.1| RNA polymerase beta'' subunit (chloroplast) [Liquidambar styraciflua]
          Length = 1390

 Score = 1022 bits (2642), Expect = 0.0
 Identities = 525/644 (81%), Positives = 569/644 (88%), Gaps = 7/644 (1%)
 Frame = -3

Query: 1912 QNNQHVESEQVIAEIRAGAYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 1733
            QN+Q+VESEQVIAEIRAG YT NFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL
Sbjct: 413  QNDQYVESEQVIAEIRAGTYTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 472

Query: 1732 PKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERKSISSLSLTNDQVRHKLFRSD 1553
            PKTSHLW+LSGGSC SS+VPFSLHKDQDQ+N HS+SVER+ IS+LS+TNDQVRHKLF SD
Sbjct: 473  PKTSHLWILSGGSCRSSVVPFSLHKDQDQMNVHSLSVERRYISNLSVTNDQVRHKLFSSD 532

Query: 1552 LSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYLLAKRRGNRFIIPFQSIRERE 1373
            +S   KKEG IP+YSELNRII +GHCNLIYPAIL ENS LLAKRR NRFIIPFQSI+ERE
Sbjct: 533  IS--GKKEGRIPDYSELNRIICSGHCNLIYPAILRENSDLLAKRRRNRFIIPFQSIQERE 590

Query: 1372 KEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRNSSGITKYGTVEAHSLVKKED 1193
            KEQ PHS+SG SIEI  PINGIFRRNSI AYFDDPRYRR SSGITKYGT+E HS+VKKED
Sbjct: 591  KEQMPHSNSGISIEI--PINGIFRRNSILAYFDDPRYRRKSSGITKYGTIEVHSIVKKED 648

Query: 1192 LVEYRGVKEFKPKYQTKVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTRIALNIRSRVG 1013
            L+E RGVKEFKP+YQ KVDRFFFIPEE HILPGSSSIMVRNNSIIG+DT+I LN RSRVG
Sbjct: 649  LIECRGVKEFKPRYQMKVDRFFFIPEEAHILPGSSSIMVRNNSIIGVDTQITLNTRSRVG 708

Query: 1012 GLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPPGVGKT---ESKKWKSGIYIQ 842
            GLVRVER+KK+IELKIFSGDI+FPGE +KIARHSGILIPPG GKT   ESKK K+ IY+Q
Sbjct: 709  GLVRVERKKKRIELKIFSGDIHFPGETNKIARHSGILIPPGTGKTNSKESKKLKNWIYVQ 768

Query: 841  RITPTKKRHFILVRPVVTYEITDGINLATPFPGDLLQERDNMKLRVVNYILRGNGKPIWG 662
            RITPTKK+HF+LVRPVVTYEI DGINLAT FP DLLQERDNMKLRVVNYIL GNGKPI G
Sbjct: 769  RITPTKKKHFVLVRPVVTYEIADGINLATLFPQDLLQERDNMKLRVVNYILYGNGKPIRG 828

Query: 661  ISDTSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVEVRINGLIRDFLRIDLVQSPIMCT 482
            ISDTSIQLVRTCLVLNWDQD+K           SFVEVR NGLIR+FLRI+LV+SPI  T
Sbjct: 829  ISDTSIQLVRTCLVLNWDQDKK--SASSGEAHASFVEVRTNGLIRNFLRINLVESPISYT 886

Query: 481  GKRNDPSGSGLISDNGSDCTTINPFYSK-AKARIKQSLSQNQGTIRTLLNKNKECQSLII 305
            GKRNDPSGSG ISDNGSD T INPFYS  +K RI+QSLSQNQGTIRTLLN+NKECQSL I
Sbjct: 887  GKRNDPSGSGWISDNGSDRTNINPFYSTYSKERIQQSLSQNQGTIRTLLNRNKECQSLRI 946

Query: 304  LSSSNCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIFQVAN---IYFLRTQNR 134
            LSSSNC RMGPFN+VKYHNVIKESIKR+PLIPIR  LGPLGT  Q+AN    Y L T N+
Sbjct: 947  LSSSNCSRMGPFNDVKYHNVIKESIKRDPLIPIRNSLGPLGTALQIANFYSFYHLITHNK 1006

Query: 133  ILITKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 2
            IL+TKYLQL+NLKQTF++L Y LMDE+GRIYNPDPC  SNIILN
Sbjct: 1007 ILVTKYLQLDNLKQTFQVLNYYLMDENGRIYNPDPC--SNIILN 1048


>gb|AHE41666.1| RNA polymerase beta' subunit, partial (chloroplast) [Rhodoleia
            championii]
          Length = 1375

 Score = 1018 bits (2633), Expect = 0.0
 Identities = 524/644 (81%), Positives = 567/644 (88%), Gaps = 7/644 (1%)
 Frame = -3

Query: 1912 QNNQHVESEQVIAEIRAGAYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 1733
            QN+Q+VESEQVIAEIRAG YTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL
Sbjct: 399  QNDQYVESEQVIAEIRAGTYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 458

Query: 1732 PKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERKSISSLSLTNDQVRHKLFRSD 1553
            PKTSHLW+LSGGSC SS+VPFSLHKDQDQ+N HS+SVER+ IS+LS+TNDQVR KLF   
Sbjct: 459  PKTSHLWILSGGSCRSSVVPFSLHKDQDQMNVHSLSVERRFISNLSVTNDQVRQKLFSFS 518

Query: 1552 LSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYLLAKRRGNRFIIPFQSIRERE 1373
              LS KKE  IP+YSELNRII TGHCNLIYPAIL ENS LLAKRR NRFIIPFQSI+ERE
Sbjct: 519  SDLSGKKESRIPDYSELNRIICTGHCNLIYPAILRENSDLLAKRRRNRFIIPFQSIQERE 578

Query: 1372 KEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRNSSGITKYGTVEAHSLVKKED 1193
            KEQ P+SDSG SIE  IPINGIFRRNSI AYFDDPRYRRNSSGITKYGT+E HS+VKK+D
Sbjct: 579  KEQMPYSDSGISIE--IPINGIFRRNSILAYFDDPRYRRNSSGITKYGTIEVHSIVKKQD 636

Query: 1192 LVEYRGVKEFKPKYQTKVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTRIALNIRSRVG 1013
            L+EYRGVKEFKP+YQ KVDRFFFIPEEVHILPGSS IMVRNNSIIG+DTRI LN RS+VG
Sbjct: 637  LIEYRGVKEFKPRYQMKVDRFFFIPEEVHILPGSSFIMVRNNSIIGVDTRITLNTRSQVG 696

Query: 1012 GLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPPGVGKT---ESKKWKSGIYIQ 842
            GLVRVER+KK+IELKIFSGDI+FPGE DKIARHSGILIPPG GKT   ESKK K+ IY+Q
Sbjct: 697  GLVRVERKKKRIELKIFSGDIHFPGETDKIARHSGILIPPGTGKTNSKESKKLKNWIYVQ 756

Query: 841  RITPTKKRHFILVRPVVTYEITDGINLATPFPGDLLQERDNMKLRVVNYILRGNGKPIWG 662
            RITPTKK++F+LVRPVVTYEI DGINLATPFP DLLQE+DNMKLRVVNYIL GNGKPI G
Sbjct: 757  RITPTKKKYFVLVRPVVTYEIADGINLATPFPQDLLQEKDNMKLRVVNYILYGNGKPIRG 816

Query: 661  ISDTSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVEVRINGLIRDFLRIDLVQSPIMCT 482
            I DTSIQLVRTCLVLNWDQ++K           SFVEVR NGLIRDFLRIDLV+SP   T
Sbjct: 817  IYDTSIQLVRTCLVLNWDQEKK--SSSIGEAYASFVEVRTNGLIRDFLRIDLVKSP---T 871

Query: 481  GKRNDPSGSGLISDNGSDCTTINPFYSK-AKARIKQSLSQNQGTIRTLLNKNKECQSLII 305
            GKRNDPSGSGLISDNGSD T INPFYS  +KARI+QS SQNQGTIRTLLN+NKECQSLII
Sbjct: 872  GKRNDPSGSGLISDNGSDRTNINPFYSTYSKARIQQSFSQNQGTIRTLLNRNKECQSLII 931

Query: 304  LSSSNCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIFQVAN---IYFLRTQNR 134
            LSSSNC RMGPFN+VKYHNVIKESIKR+P IPIR  LGPLGT  Q+AN    Y+L T N+
Sbjct: 932  LSSSNCSRMGPFNDVKYHNVIKESIKRDPPIPIRNSLGPLGTALQIANFYSFYYLITHNQ 991

Query: 133  ILITKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 2
            IL+TKYLQL+NLKQTF+I  Y LMDE+GRIYNPDP   SNIILN
Sbjct: 992  ILVTKYLQLDNLKQTFQIFNYYLMDENGRIYNPDP--RSNIILN 1033


>gb|AHE41653.1| RNA polymerase beta' subunit (chloroplast) [Hamamelis mollis]
          Length = 1387

 Score = 1018 bits (2633), Expect = 0.0
 Identities = 527/643 (81%), Positives = 565/643 (87%), Gaps = 6/643 (0%)
 Frame = -3

Query: 1912 QNNQHVESEQVIAEIRAGAYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 1733
            QN+Q+VESEQVIAEIRAG YT NFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL
Sbjct: 413  QNDQYVESEQVIAEIRAGTYTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 472

Query: 1732 PKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERKSISSLSLTNDQVRHKLFRSD 1553
            PKTSHLW+LSGGSC SS VPFSLHKDQDQ++ HS+SVER+ IS+LS+TNDQVRHK F SD
Sbjct: 473  PKTSHLWILSGGSCRSSGVPFSLHKDQDQMSVHSLSVERRYISNLSVTNDQVRHKFFSSD 532

Query: 1552 LSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYLLAKRRGNRFIIPFQSIRERE 1373
            LS   KKEG IP+YSELNRII TGHCN IYPAIL ENS LLAKRR NRFIIPFQ I+ERE
Sbjct: 533  LS--GKKEGRIPDYSELNRIICTGHCNPIYPAILRENSDLLAKRRRNRFIIPFQPIQERE 590

Query: 1372 KEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRNSSGITKYGTVEAHSLVKKED 1193
            KEQ PHSDSG SIEI  PINGIFRRNSI AYFDDPRYRRNSSGITKYGT+E HS+VKKED
Sbjct: 591  KEQMPHSDSGISIEI--PINGIFRRNSILAYFDDPRYRRNSSGITKYGTIEVHSIVKKED 648

Query: 1192 LVEYRGVKEFKPKYQTKVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTRIALNIRSRVG 1013
            L+EYRGVKEFKPKYQ KVDRFFFIPEEVHILPGSSSIMVRNNSIIG+DTRI LNIRSRVG
Sbjct: 649  LIEYRGVKEFKPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTRITLNIRSRVG 708

Query: 1012 GLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPPGVGKT---ESKKWKSGIYIQ 842
            GLVRVE++KK+IELKIFSGDI+FPGE DKIARHSGILIPPG GKT   ESKK K+ IY+Q
Sbjct: 709  GLVRVEKKKKRIELKIFSGDIHFPGETDKIARHSGILIPPGTGKTNSKESKKLKNWIYVQ 768

Query: 841  RITPTKKRHFILVRPVVTYEITDGINLATPFPGDLLQERDNMKLRVVNYILRGNGKPIWG 662
            RITPTKK++F+LVRPVVTYEI DGINLAT F  DLLQERDNMKLRVVNYIL GNGKPI G
Sbjct: 769  RITPTKKKYFVLVRPVVTYEIADGINLATLFAQDLLQERDNMKLRVVNYILYGNGKPIRG 828

Query: 661  ISDTSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVEVRINGLIRDFLRIDLVQSPIMCT 482
            ISDTSIQLVRTCLVLNWDQD+K           SFVEVR NGLIRDFLRIDLV+SPI  T
Sbjct: 829  ISDTSIQLVRTCLVLNWDQDKK--SSSIGEAHASFVEVRTNGLIRDFLRIDLVKSPISYT 886

Query: 481  GKRNDPSGSGLISDNGSDCTTINPFYSKAKARIKQSLSQNQGTIRTLLNKNKECQSLIIL 302
            GKRNDPSGSGLISDNGSD T INPFYS  KARI+QSLSQNQG IR LLN+NKECQSLIIL
Sbjct: 887  GKRNDPSGSGLISDNGSDRTNINPFYS--KARIQQSLSQNQGIIRALLNRNKECQSLIIL 944

Query: 301  SSSNCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIFQVAN---IYFLRTQNRI 131
            SSSNC RMGPFN+VKYHN IKESIKR+PLIPI+  LGPLGT  Q+AN    Y L T N+I
Sbjct: 945  SSSNCSRMGPFNDVKYHNGIKESIKRDPLIPIKNSLGPLGTALQIANFYSFYHLLTHNQI 1004

Query: 130  LITKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 2
            L+TKYLQL+NLKQTF++L Y LMDE+ RIYNPD C  SNIILN
Sbjct: 1005 LVTKYLQLDNLKQTFQVLNYYLMDENERIYNPDSC--SNIILN 1045


>gb|AHE41660.1| RNA polymerase beta' subunit, partial (chloroplast) [Exbucklandia
            populnea]
          Length = 1368

 Score = 1014 bits (2622), Expect = 0.0
 Identities = 533/644 (82%), Positives = 571/644 (88%), Gaps = 7/644 (1%)
 Frame = -3

Query: 1912 QNNQHVESEQVIAEIRAGAYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 1733
            QN+Q+VESEQVIAEIRAG YTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL
Sbjct: 389  QNDQYVESEQVIAEIRAGTYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 448

Query: 1732 PKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERKSISSLSLTNDQVRHKLFRSD 1553
            PKTSHLW+LSGGSC SS+VPFSLHKDQDQ+N HS+SVER+ IS+LS+TNDQVRHKLF   
Sbjct: 449  PKTSHLWILSGGSCRSSVVPFSLHKDQDQMNVHSLSVERRFISNLSVTNDQVRHKLFSFS 508

Query: 1552 LSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYLLAKRRGNRFIIPFQSIRERE 1373
              LS KKEGGIP+YSELNR+I TGHCNLIYPAIL ENS LLAKRR N FIIPFQSI+ERE
Sbjct: 509  SDLSGKKEGGIPDYSELNRMICTGHCNLIYPAILRENSDLLAKRRRNGFIIPFQSIQERE 568

Query: 1372 KEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRNSSGITKYGTVEAHSLVKKED 1193
            KEQ PHSDSG SIE  IPINGIFRRNSI AYFDDPRYRRNSSGITKYGT+E HS+VKK+D
Sbjct: 569  KEQMPHSDSGISIE--IPINGIFRRNSILAYFDDPRYRRNSSGITKYGTIEVHSIVKKQD 626

Query: 1192 LVEYRGVKEFKPKYQTKVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTRIALNIRSRVG 1013
            L+EYRGVKEFKP+YQ KVDRFFFIPEEVHILPGSS IMVRNNSIIG+DTRI LN RSRVG
Sbjct: 627  LIEYRGVKEFKPRYQMKVDRFFFIPEEVHILPGSSFIMVRNNSIIGVDTRITLNTRSRVG 686

Query: 1012 GLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPPGVGKT---ESKKWKSGIYIQ 842
            GLVRVER+KK IELKIFSGDI+FPGE DKIARHSGILIPPG GKT   ESKK K+ IY+Q
Sbjct: 687  GLVRVERKKKGIELKIFSGDIHFPGETDKIARHSGILIPPGTGKTNSKESKKLKNWIYVQ 746

Query: 841  RITPTKKRHFILVRPVVTYEITDGINLATPFPGDLLQERDNMKLRVVNYILRGNGKPIWG 662
            RITPTKK++F+LVRPVVTYEI DGINLAT FP DLLQERDNMKLRVVNYIL GNGKPI G
Sbjct: 747  RITPTKKKYFVLVRPVVTYEIADGINLATLFPQDLLQERDNMKLRVVNYILYGNGKPIRG 806

Query: 661  ISDTSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVEVRINGLIRDFLRIDLVQSPIMCT 482
            I DTSIQLVRTC  L                  SFVEVR NGLIRDFLRIDLV+SPI  T
Sbjct: 807  IYDTSIQLVRTC--LXXXXXXXXXXXXXXXXXASFVEVRTNGLIRDFLRIDLVKSPISYT 864

Query: 481  GKRNDPSGSGLISDNGSDCTTINPFYSK-AKARIKQSLSQNQGTIRTLLNKNKECQSLII 305
            GKRNDPSGSGLISDNGSD T INPFYS  +KARI+QS SQNQGTIRTLLN+NKECQSLII
Sbjct: 865  GKRNDPSGSGLISDNGSDRTNINPFYSTYSKARIQQSFSQNQGTIRTLLNRNKECQSLII 924

Query: 304  LSSSNCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIFQVAN---IYFLRTQNR 134
            LSSSNC RMGPFN+VKYHNVIKESIKR+PLIPIR  LGPLGT  Q+AN    Y L T N+
Sbjct: 925  LSSSNCSRMGPFNDVKYHNVIKESIKRDPLIPIRDSLGPLGTALQIANFYSFYHLITHNK 984

Query: 133  ILITKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 2
            IL+TKYLQL+NLKQTF++L Y LMDE+GRIYNPDPC  SNIILN
Sbjct: 985  ILVTKYLQLDNLKQTFQVLNYYLMDENGRIYNPDPC--SNIILN 1026


>gb|AHE41656.1| RNA polymerase beta' subunit (chloroplast) [Daphniphyllum oldhamii]
          Length = 1392

 Score =  995 bits (2572), Expect = 0.0
 Identities = 512/644 (79%), Positives = 560/644 (86%), Gaps = 7/644 (1%)
 Frame = -3

Query: 1912 QNNQHVESEQVIAEIRAGAYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 1733
            QN+Q+V+SEQVIAEIRAG YT NFKERV+KHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL
Sbjct: 413  QNDQYVQSEQVIAEIRAGTYTFNFKERVQKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 472

Query: 1732 PKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERKSISSLSLTNDQVRHKLFRSD 1553
            PKTSHLW+LSGGS  SS+VPFSLHKDQDQ+N HS+SVER+ IS+LS+T+DQVRHKLF S 
Sbjct: 473  PKTSHLWILSGGSSRSSVVPFSLHKDQDQMNVHSLSVERRYISNLSVTDDQVRHKLFSS- 531

Query: 1552 LSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYLLAKRRGNRFIIPFQSIRERE 1373
              LS KKEG IP+YSELNRII T HCNLIYPAIL ENS LLAKRR NRFIIPFQSI+ERE
Sbjct: 532  -YLSGKKEGRIPDYSELNRIIGTSHCNLIYPAILPENSDLLAKRRRNRFIIPFQSIQERE 590

Query: 1372 KEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRNSSGITKYGTVEAHSLVKKED 1193
            KEQ PHSDSG  I I+IPINGIFR NSI AYFDDPRYRRNS G+TKYGT+E HS+VKKED
Sbjct: 591  KEQMPHSDSG--ILIEIPINGIFRINSILAYFDDPRYRRNSLGLTKYGTIEVHSIVKKED 648

Query: 1192 LVEYRGVKEFKPKYQTKVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTRIALNIRSRVG 1013
             +EYRGVKEFKP+YQ KVDRFFFIPEEVHILPGS SIMVRNNSIIG+DT I LN RSRVG
Sbjct: 649  FIEYRGVKEFKPRYQMKVDRFFFIPEEVHILPGSCSIMVRNNSIIGVDTLITLNTRSRVG 708

Query: 1012 GLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPPGVGKT---ESKKWKSGIYIQ 842
            GLVRVE++K  IELKIFSGDI+FPGE DKIARHSGILIPPG GKT   ES K K+ IY+Q
Sbjct: 709  GLVRVEKKKGGIELKIFSGDIHFPGETDKIARHSGILIPPGAGKTNSKESNKLKNWIYVQ 768

Query: 841  RITPTKKRHFILVRPVVTYEITDGINLATPFPGDLLQERDNMKLRVVNYILRGNGKPIWG 662
            RITPTKK++F+LVRPVVTYEI DGINLAT FP DLLQERDNMKLRVVNYIL GNGKPI G
Sbjct: 769  RITPTKKKYFVLVRPVVTYEIADGINLATLFPQDLLQERDNMKLRVVNYILYGNGKPIRG 828

Query: 661  ISDTSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVEVRINGLIRDFLRIDLVQSPIMCT 482
            ISDT+IQLVRTCLVLNWDQD+K           SFVE R NGLIRDFLRIDLV+SPI  T
Sbjct: 829  ISDTNIQLVRTCLVLNWDQDKK--SSSIGEAHASFVETRTNGLIRDFLRIDLVKSPISYT 886

Query: 481  GKRNDPSGSGLISDNGSDCTTINPFYSK-AKARIKQSLSQNQGTIRTLLNKNKECQSLII 305
            GKRNDPSG GLI++NGSD T INPFYS  +KARI+QSLSQNQGTIRTLLN+NKECQSLII
Sbjct: 887  GKRNDPSGLGLIANNGSDRTNINPFYSTYSKARIQQSLSQNQGTIRTLLNRNKECQSLII 946

Query: 304  LSSSNCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIFQVAN---IYFLRTQNR 134
            LSSSNC RMGPFN+VKYHNVIKESIKR+PLIPIR  +GPLGT  Q+ N    Y L T N+
Sbjct: 947  LSSSNCSRMGPFNDVKYHNVIKESIKRDPLIPIRNSVGPLGTALQIVNFYSFYHLITHNQ 1006

Query: 133  ILITKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 2
            IL+TKYLQL+ LK+TF++L Y LMDE+GRIYNPDPC  SNIILN
Sbjct: 1007 ILVTKYLQLDKLKETFQVLNYYLMDENGRIYNPDPC--SNIILN 1048


>gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berberidopsis corallina]
          Length = 1389

 Score =  985 bits (2547), Expect = 0.0
 Identities = 510/644 (79%), Positives = 557/644 (86%), Gaps = 7/644 (1%)
 Frame = -3

Query: 1912 QNNQHVESEQVIAEIRAGAYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 1733
            QN+Q+VESEQVIAEIRAG  TLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL
Sbjct: 413  QNDQYVESEQVIAEIRAGTSTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 472

Query: 1732 PKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERKSISSLSLTNDQVRHKLFRSD 1553
            PKTSHLW+LSGG C SS+ PFSLHKDQDQ+N HS+SVER+ IS+LS+TNDQVRHK F S 
Sbjct: 473  PKTSHLWILSGGPCRSSVAPFSLHKDQDQMNVHSLSVERRYISNLSVTNDQVRHKFFSS- 531

Query: 1552 LSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYLLAKRRGNRFIIPFQSIRERE 1373
               S KKEG IP+YSELNRII T  CNLIYPAIL ENS LLAKRR NRFIIPFQSI+ERE
Sbjct: 532  -YFSGKKEGRIPDYSELNRIIGTSRCNLIYPAILYENSDLLAKRRKNRFIIPFQSIQERE 590

Query: 1372 KEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRNSSGITKYGTVEAHSLVKKED 1193
            KE  P S     I I+IPINGIFRRNSI AYFDDPRYRR SSGITKYGT+E HS+VKKED
Sbjct: 591  KELMPRS----GISIEIPINGIFRRNSILAYFDDPRYRRKSSGITKYGTIEVHSIVKKED 646

Query: 1192 LVEYRGVKEFKPKYQTKVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTRIALNIRSRVG 1013
            L+EYRGVKEF+PKYQ KVDRFFFIPEEVHILPGSSSIMVRNNSIIG++T+I LN RSRVG
Sbjct: 647  LIEYRGVKEFRPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVNTQITLNTRSRVG 706

Query: 1012 GLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPPGVGKT---ESKKWKSGIYIQ 842
            GLVRVER+KK+IELKIFSGDI+FPGE DKI+RHSGILIPPG GK    ESKK KS IY+Q
Sbjct: 707  GLVRVERKKKRIELKIFSGDIHFPGETDKISRHSGILIPPGTGKANSKESKKLKSWIYVQ 766

Query: 841  RITPTKKRHFILVRPVVTYEITDGINLATPFPGDLLQERDNMKLRVVNYILRGNGKPIWG 662
            RITPTKK++F+LVRPVVTYEI DGINLAT FP DLLQERDN++LRVVNYIL GN KPI  
Sbjct: 767  RITPTKKKYFVLVRPVVTYEIADGINLATLFPQDLLQERDNVQLRVVNYILYGNSKPIRR 826

Query: 661  ISDTSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVEVRINGLIRDFLRIDLVQSPIMCT 482
            ISDTSIQLVRTCLVLNWDQD+K           SFVEV+ NGLIRDFLRIDLV+SPI  T
Sbjct: 827  ISDTSIQLVRTCLVLNWDQDKK--SSSIEEAHASFVEVKTNGLIRDFLRIDLVKSPISYT 884

Query: 481  GKRNDPSGSGLISDNGSDCTTINPFYS-KAKARIKQSLSQNQGTIRTLLNKNKECQSLII 305
            GKRNDPSGSGLISD+GSD T INPFYS  +KARI+QSLSQNQGTIRTLLN+NKECQSLII
Sbjct: 885  GKRNDPSGSGLISDSGSDRTNINPFYSIYSKARIQQSLSQNQGTIRTLLNRNKECQSLII 944

Query: 304  LSSSNCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIFQVAN---IYFLRTQNR 134
            LSSSNC RMGPFN+VKYHNVIKESIK++PLIPIR  LGPLGT  Q+AN    Y L T N+
Sbjct: 945  LSSSNCSRMGPFNSVKYHNVIKESIKKDPLIPIRNLLGPLGTALQIANFYSFYHLITHNQ 1004

Query: 133  ILITKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 2
            IL+T YLQL+NLKQ  ++LKY LMDE+GRIYNPDPC  SNI+LN
Sbjct: 1005 ILVTNYLQLDNLKQA-QVLKYYLMDENGRIYNPDPC--SNILLN 1045


>ref|YP_008963470.1| RNA polymerase beta' subunit (chloroplast) [Penthorum chinense]
            gi|403226771|gb|AFR25650.1| RNA polymerase beta' subunit
            (chloroplast) [Penthorum chinense]
          Length = 1387

 Score =  979 bits (2530), Expect = 0.0
 Identities = 509/643 (79%), Positives = 550/643 (85%), Gaps = 6/643 (0%)
 Frame = -3

Query: 1912 QNNQHVESEQVIAEIRAGAYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 1733
            QN+Q+VESEQVIAEIRAGA T NFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL
Sbjct: 413  QNDQYVESEQVIAEIRAGASTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 472

Query: 1732 PKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERKSISSLSLTNDQVRHKLFRSD 1553
            PKTSHLW+LSG SC SS+VPFSLHKDQDQ+N HS+SVER+ IS+LS+TNDQ R K+  SD
Sbjct: 473  PKTSHLWILSGSSCGSSVVPFSLHKDQDQMNVHSLSVERRYISNLSVTNDQAREKICSSD 532

Query: 1552 LSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYLLAKRRGNRFIIPFQSIRERE 1373
            LS   KKEG IP+YSE NRII TGHCNL+ P IL ENS LLAKRR NRFIIPFQSI+ERE
Sbjct: 533  LS--GKKEGRIPDYSEFNRIICTGHCNLMDPTILHENSDLLAKRRRNRFIIPFQSIQERE 590

Query: 1372 KEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRNSSGITKYGTVEAHSLVKKED 1193
            KEQ PH DSG SIEI  PINGIFRRNSI AYFDDP+YRRNSSGITKYGT+E HS+VKKED
Sbjct: 591  KEQIPHLDSGISIEI--PINGIFRRNSILAYFDDPQYRRNSSGITKYGTIEVHSIVKKED 648

Query: 1192 LVEYRGVKEFKPKYQTKVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTRIALNIRSRVG 1013
             +EYRGVKEFKP+YQ KVDRFFFIPEEVHILPGSSSIMVRNNSIIG+ TRI LN RSRVG
Sbjct: 649  FIEYRGVKEFKPRYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVGTRITLNTRSRVG 708

Query: 1012 GLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPPGVGKTESK---KWKSGIYIQ 842
            GLVRVER+KK+IELKIFSGDIYFPGE DKIARHSGILIPPG GKT SK   K  + IY+Q
Sbjct: 709  GLVRVERKKKRIELKIFSGDIYFPGETDKIARHSGILIPPGTGKTNSKEYNKLNNWIYVQ 768

Query: 841  RITPTKKRHFILVRPVVTYEITDGINLATPFPGDLLQERDNMKLRVVNYILRGNGKPIWG 662
            RITPTKK++F+LVRPVVTYEI DGINLAT FP D LQERDNMKLRVVNYIL GNGKP  G
Sbjct: 769  RITPTKKKYFVLVRPVVTYEIADGINLATLFPQDPLQERDNMKLRVVNYILYGNGKPTRG 828

Query: 661  ISDTSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVEVRINGLIRDFLRIDLVQSPIMCT 482
            ISDTSIQLVRTCLVLNWDQD+K           SF+EVR N LIRDFLRIDLV+SPI   
Sbjct: 829  ISDTSIQLVRTCLVLNWDQDKK--SSSIGEAHASFIEVRTNDLIRDFLRIDLVKSPISYI 886

Query: 481  GKRNDPSGSGLISDNGSDCTTINPFYSKAKARIKQSLSQNQGTIRTLLNKNKECQSLIIL 302
            GKRNDPSGSGLI +NGSD T INPFYS  KA I+Q  SQNQGTIRTLLN+NKECQSLIIL
Sbjct: 887  GKRNDPSGSGLIYNNGSDNTNINPFYS--KAWIQQPFSQNQGTIRTLLNRNKECQSLIIL 944

Query: 301  SSSNCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIFQVAN---IYFLRTQNRI 131
            SSSNCFRMG  N+VKYH+VIKE IKR+PLIPI K LGPLGT   + N    Y L T N+I
Sbjct: 945  SSSNCFRMGSLNDVKYHHVIKEVIKRDPLIPISKSLGPLGTTLPITNFYSFYHLITHNQI 1004

Query: 130  LITKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 2
            L+TKYLQL+NLKQTF+ILKY LMDE+GRIYNPD C  SNIILN
Sbjct: 1005 LVTKYLQLDNLKQTFQILKYYLMDENGRIYNPDLC--SNIILN 1045


>gb|AHE41657.1| RNA polymerase beta' subunit (chloroplast) [Itea chinensis]
          Length = 1377

 Score =  962 bits (2486), Expect = 0.0
 Identities = 506/643 (78%), Positives = 547/643 (85%), Gaps = 6/643 (0%)
 Frame = -3

Query: 1912 QNNQHVESEQVIAEIRAGAYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 1733
            QN+Q+VESEQVIAEIRAG  T NFKERVRKHIYSDSEGEMHWSTDVYHA EFTYGNVHLL
Sbjct: 413  QNDQYVESEQVIAEIRAGISTFNFKERVRKHIYSDSEGEMHWSTDVYHATEFTYGNVHLL 472

Query: 1732 PKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERKSISSLSLTNDQVRHKLFRSD 1553
            PKTSHLW+LSGGSC S++VPF LHKDQDQIN HS+SVERK IS+LS+TNDQVRHKLF S 
Sbjct: 473  PKTSHLWILSGGSCRSNVVPFWLHKDQDQINLHSLSVERKYISNLSMTNDQVRHKLFSSY 532

Query: 1552 LSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYLLAKRRGNRFIIPFQSIRERE 1373
             S        IP+YSEL  II T HCNLIYPAIL EN  LL+KRR NRFIIPF+SI+ERE
Sbjct: 533  FSGKI-----IPDYSELTGIICTDHCNLIYPAILHENYDLLSKRRRNRFIIPFKSIQERE 587

Query: 1372 KEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRNSSGITKYGTVEAHSLVKKED 1193
            KEQ PHSDSG SIE  IPI GIFRRNSI AYFDDPRYRR SSGITKYGT+EAHS+VKKED
Sbjct: 588  KEQRPHSDSGISIE--IPIKGIFRRNSILAYFDDPRYRRKSSGITKYGTIEAHSIVKKED 645

Query: 1192 LVEYRGVKEFKPKYQTKVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTRIALNIRSRVG 1013
            L+EYRGVKEFKPKY   VDRFFFIPEEVHILP SSSIMVRNNSIIG+DTRI LN RSRVG
Sbjct: 646  LIEYRGVKEFKPKYH--VDRFFFIPEEVHILPVSSSIMVRNNSIIGVDTRITLNKRSRVG 703

Query: 1012 GLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPPGVGKTES---KKWKSGIYIQ 842
            GLVRVER+K+ IELKIFSGDIYFPGE DKIAR+SGILIPPG GKT S   KKWK+ IY+Q
Sbjct: 704  GLVRVERKKRGIELKIFSGDIYFPGETDKIARYSGILIPPGTGKTNSKEFKKWKNWIYVQ 763

Query: 841  RITPTKKRHFILVRPVVTYEITDGINLATPFPGDLLQERDNMKLRVVNYILRGNGKPIWG 662
            RITPTKK++F+LVRPVVTYEI  GINLAT FP DLLQERDNMKLRVVNYIL GNGKPI G
Sbjct: 764  RITPTKKKYFVLVRPVVTYEIAGGINLATLFPQDLLQERDNMKLRVVNYILYGNGKPIQG 823

Query: 661  ISDTSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVEVRINGLIRDFLRIDLVQSPIMCT 482
            I DTSIQLVRT LVLNWDQD+K           SFVEVR +GLIRDFLRIDLV+ PI  T
Sbjct: 824  IYDTSIQLVRTSLVLNWDQDKK--SSSIRETHASFVEVRTSGLIRDFLRIDLVKFPISYT 881

Query: 481  GKRNDPSGSGLISDNGSDCTTINPFYSKAKARIKQSLSQNQGTIRTLLNKNKECQSLIIL 302
             KRNDPSGSG ISDNGS+ T INPFYS  KARI+QSLSQN+GTI TLLN+NKECQSLIIL
Sbjct: 882  RKRNDPSGSGFISDNGSNRTNINPFYS--KARIQQSLSQNKGTIHTLLNRNKECQSLIIL 939

Query: 301  SSSNCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIFQVANIYF---LRTQNRI 131
            SSSNC R+GPFN+VKYHNVIKESIKR+ +IPIR  LGPLGT   +AN Y    L T N+I
Sbjct: 940  SSSNCSRIGPFNDVKYHNVIKESIKRDFIIPIRNLLGPLGTALPIANFYLFYHLITHNQI 999

Query: 130  LITKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 2
            LITKYLQL+NLKQTF+I+KY LMDE+GRIYNPDPC   NIILN
Sbjct: 1000 LITKYLQLDNLKQTFQIIKYYLMDENGRIYNPDPC--RNIILN 1040


>gb|ABV65740.1| RNA polymerase beta'' subunit (chloroplast) [Heuchera sanguinea]
          Length = 1376

 Score =  960 bits (2481), Expect = 0.0
 Identities = 502/643 (78%), Positives = 549/643 (85%), Gaps = 6/643 (0%)
 Frame = -3

Query: 1912 QNNQHVESEQVIAEIRAGAYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 1733
            +N+Q+VESEQVIAEIRAG  T NFKERVRKHIYSDS+GEMHWSTDVYHAPEFTYGNVHLL
Sbjct: 413  KNDQYVESEQVIAEIRAGTSTFNFKERVRKHIYSDSQGEMHWSTDVYHAPEFTYGNVHLL 472

Query: 1732 PKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERKSISSLSLTNDQVRHKLFRSD 1553
            PKTSHLW+LSG SC S++VPFSLHKDQDQ+N HS+SVERK IS+ S+TNDQVRHKLF SD
Sbjct: 473  PKTSHLWILSGSSCRSNVVPFSLHKDQDQLNVHSLSVERKYISNFSVTNDQVRHKLFSSD 532

Query: 1552 LSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYLLAKRRGNRFIIPFQSIRERE 1373
             S   K+   IP+YSELNRII T HCN IYPAIL EN  LL+KRR NR IIPFQSI+ERE
Sbjct: 533  RS--GKR---IPDYSELNRIICTDHCNFIYPAILHENYDLLSKRRKNRLIIPFQSIQERE 587

Query: 1372 KEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRNSSGITKYGTVEAHSLVKKED 1193
            KEQ PHSDSG SIEI  PINGIFR+NSI AYFDDPRYRRNSSGITKYGT+E HS+VKKED
Sbjct: 588  KEQMPHSDSGISIEI--PINGIFRKNSIMAYFDDPRYRRNSSGITKYGTIEVHSIVKKED 645

Query: 1192 LVEYRGVKEFKPKYQTKVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTRIALNIRSRVG 1013
            L+EYRG KEFKP+YQ +VDRFFFIPEEVHILPGSSSIMVRNNSIIG+ TRI LN RSRVG
Sbjct: 646  LIEYRGGKEFKPRYQMQVDRFFFIPEEVHILPGSSSIMVRNNSIIGVSTRITLNKRSRVG 705

Query: 1012 GLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPPGVGKT---ESKKWKSGIYIQ 842
            GLVR+ER+K+ IELKIFSGDIYF GE DKIARHSGILIPPG GKT   ESKK K+ +Y+Q
Sbjct: 706  GLVRMERKKRGIELKIFSGDIYFAGETDKIARHSGILIPPGTGKTNSKESKKLKNWLYVQ 765

Query: 841  RITPTKKRHFILVRPVVTYEITDGINLATPFPGDLLQERDNMKLRVVNYILRGNGKPIWG 662
            RITPTKK++F+LVRPVVTYEI DGINLAT FP DLLQERDNMKLRVVNYIL GNGKPI G
Sbjct: 766  RITPTKKKYFVLVRPVVTYEIADGINLATLFPEDLLQERDNMKLRVVNYILYGNGKPIRG 825

Query: 661  ISDTSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVEVRINGLIRDFLRIDLVQSPIMCT 482
            ISDTSIQLVRTCLVLNWDQD+K           SFVEV   GLIRDFLRID+V+SPI  T
Sbjct: 826  ISDTSIQLVRTCLVLNWDQDKK--SSSVGEAHASFVEVSTTGLIRDFLRIDVVKSPISYT 883

Query: 481  GKRNDPSGSGLISDNGSDCTTINPFYSKAKARIKQSLSQNQGTIRTLLNKNKECQSLIIL 302
            GKRN PS SGL+ DNGSD T INPFYSKAK  I+QSLSQNQGTIRTL N+NKE QSLIIL
Sbjct: 884  GKRNSPSSSGLVYDNGSDRTNINPFYSKAK--IQQSLSQNQGTIRTLFNRNKEFQSLIIL 941

Query: 301  SSSNCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIFQVANIYF---LRTQNRI 131
            SSSNC RMGPFN+   HNVIKESIKR+ LIPIR  LGPLGT  Q+ N Y    L T+N+I
Sbjct: 942  SSSNCSRMGPFND---HNVIKESIKRDFLIPIRNSLGPLGTALQIENFYSFYDLITRNQI 998

Query: 130  LITKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 2
            L+TKYLQLENLKQ F++LKY LMDE+GRIYNPDPCS+  IILN
Sbjct: 999  LVTKYLQLENLKQIFQVLKYFLMDENGRIYNPDPCST--IILN 1039


>gb|ABV65738.1| RNA polymerase beta'' subunit (chloroplast) [Gunnera manicata]
          Length = 1386

 Score =  959 bits (2480), Expect = 0.0
 Identities = 496/646 (76%), Positives = 547/646 (84%), Gaps = 9/646 (1%)
 Frame = -3

Query: 1912 QNNQHVESEQVIAEIRAGAYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 1733
            QN+Q+VESEQVIAEIRAG  TLNFKERVRKHIYSDSEGEMHWSTDVYH PE+TYGNVHLL
Sbjct: 413  QNDQYVESEQVIAEIRAGTSTLNFKERVRKHIYSDSEGEMHWSTDVYHVPEYTYGNVHLL 472

Query: 1732 PKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERKSISSLSLTNDQVRHKLFRSD 1553
            PKTSHLW+LSGG C SS+V FSLHKDQDQ+N HS+SVE++ IS+ S  N+QVRHKLF SD
Sbjct: 473  PKTSHLWILSGGPCRSSVVSFSLHKDQDQMNVHSLSVEQRYISNFSAINNQVRHKLFSSD 532

Query: 1552 LSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYLLAKRRGNRFIIPFQSIRERE 1373
            L    KKEG IP+YSELNRII TGHCN IYPAIL EN YLLAKRR NRFIIPFQSI+ERE
Sbjct: 533  LY--GKKEGSIPDYSELNRIICTGHCNFIYPAILHENFYLLAKRRRNRFIIPFQSIQERE 590

Query: 1372 KEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRNSSGITKYGTVEAHSLVKKED 1193
            KE  P S     I I+IPINGIFRRNSI AYFDD RYRR  SGITKYGT+E HS++KKED
Sbjct: 591  KELMPRS----GISIEIPINGIFRRNSILAYFDDFRYRRTGSGITKYGTIEMHSIIKKED 646

Query: 1192 LVEYRGVKEFKPKYQTKVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTRIALNIRSRVG 1013
            L+EYRGVKEF+PKYQ KVDRFFFIPEEVHILPGSS +MVRNNSIIG+DT+I  N RSRVG
Sbjct: 647  LIEYRGVKEFRPKYQIKVDRFFFIPEEVHILPGSSYVMVRNNSIIGVDTQITFNTRSRVG 706

Query: 1012 GLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPPGVGKT---ESKKWKSGIYIQ 842
            GLVRVE++KK IELKIFSG+I+FPGE DKI+RHSGILIPPG GKT   ESK+ K+ IY+Q
Sbjct: 707  GLVRVEKKKKSIELKIFSGNIHFPGETDKISRHSGILIPPGTGKTNSKESKELKNWIYVQ 766

Query: 841  RITPTKKRHFILVRPVVTYEITDGINLATPFPGDLLQERDNMKLRVVNYILRGNGKPIWG 662
            RITPTKK++F+LVRPV+TYEITDGINLAT FP DLLQERDN++ RVVNYIL GNG  I G
Sbjct: 767  RITPTKKKYFVLVRPVITYEITDGINLATLFPQDLLQERDNVQFRVVNYILYGNGNQIRG 826

Query: 661  ISDTSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVEVRINGLIRDFLRIDLVQSPIMCT 482
            ISDTSIQLVRTCLVLNWDQD+K           SFVEVR NGLIRDFLRIDLV+SPI  T
Sbjct: 827  ISDTSIQLVRTCLVLNWDQDKK--NSSIEEAPASFVEVRTNGLIRDFLRIDLVKSPISYT 884

Query: 481  GKRNDPSGSGLISDNGSDCTTINPFYS-KAKARIKQSLSQ--NQGTIRTLLNKNKECQSL 311
            GKRNDP+GSGLISDNGSD T INPFYS  +K RI+QSLSQ  NQGTIRTLLN+NKECQ  
Sbjct: 885  GKRNDPAGSGLISDNGSDRTNINPFYSIYSKGRIQQSLSQNKNQGTIRTLLNRNKECQFF 944

Query: 310  IILSSSNCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIFQVAN---IYFLRTQ 140
            +ILSSSNC RMGPFN VKY NVIKESIKR+PLIPIR  LGPLGT  ++AN    Y L T 
Sbjct: 945  LILSSSNCSRMGPFNGVKYKNVIKESIKRDPLIPIRDSLGPLGTALKIANFYSFYHLITH 1004

Query: 139  NRILITKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 2
            N IL+TKYLQL+NLKQTF++L Y LMDE+GRIYNPD C  SNIILN
Sbjct: 1005 NHILVTKYLQLDNLKQTFQVLTYYLMDENGRIYNPDLC--SNIILN 1048


>gb|ABQ15060.1| RNA polymerase beta' subunit [Cercidiphyllum japonicum]
          Length = 798

 Score =  959 bits (2479), Expect = 0.0
 Identities = 496/602 (82%), Positives = 531/602 (88%), Gaps = 5/602 (0%)
 Frame = -3

Query: 1792 HWSTDVYHAPEFTYGNVHLLPKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERK 1613
            HWSTDVYHAPEFTYGNVHLLPKTSHLW+LSGGSC SS+VPFSLHKDQDQ++ HS+SVER+
Sbjct: 1    HWSTDVYHAPEFTYGNVHLLPKTSHLWILSGGSCRSSVVPFSLHKDQDQMSVHSLSVERR 60

Query: 1612 SISSLSLTNDQVRHKLFRSDLSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYL 1433
             IS+LS+TNDQVRHKLF SDLS   KKEGGIPNYSELNRII TGHCNLIYPAIL ENS L
Sbjct: 61   YISNLSVTNDQVRHKLFSSDLS--GKKEGGIPNYSELNRIICTGHCNLIYPAILRENSDL 118

Query: 1432 LAKRRGNRFIIPFQSIREREKEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRN 1253
            LAKRR NRFIIPFQSI+EREKEQ  HSDSG SIEI  PINGIFRRNSI AYFDDPRYRRN
Sbjct: 119  LAKRRRNRFIIPFQSIQEREKEQMSHSDSGISIEI--PINGIFRRNSILAYFDDPRYRRN 176

Query: 1252 SSGITKYGTVEAHSLVKKEDLVEYRGVKEFKPKYQTKVDRFFFIPEEVHILPGSSSIMVR 1073
            SSGITKYGT+E HS+VKKEDL+EYRGVKEFKP+YQ KVDRFFFIPEEVHILPGSSSIMVR
Sbjct: 177  SSGITKYGTIEVHSIVKKEDLIEYRGVKEFKPRYQMKVDRFFFIPEEVHILPGSSSIMVR 236

Query: 1072 NNSIIGIDTRIALNIRSRVGGLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPP 893
            NNSIIG+DTRI LN RSRVGGLVRVER+KK+IELKIFSGDIYFPGE DKIARHSGILIPP
Sbjct: 237  NNSIIGVDTRITLNTRSRVGGLVRVERKKKRIELKIFSGDIYFPGETDKIARHSGILIPP 296

Query: 892  GVGK---TESKKWKSGIYIQRITPTKKRHFILVRPVVTYEITDGINLATPFPGDLLQERD 722
            G GK    ESKK K+ IY+QRITPTKK++F+LVRPVVTYEI DGINLAT FP DLLQERD
Sbjct: 297  GTGKKNSKESKKLKNWIYVQRITPTKKKYFVLVRPVVTYEIADGINLATXFPQDLLQERD 356

Query: 721  NMKLRVVNYILRGNGKPIWGISDTSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVEVRI 542
            NMKLRVVNYIL GNGKPI GISDTSIQLVRTCLVLNWDQD+K           SFVEVR 
Sbjct: 357  NMKLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDKK--SSSIGEAHASFVEVRT 414

Query: 541  NGLIRDFLRIDLVQSPIMCTGKRNDPSGSGLISDNGSDCTTINPFYSK-AKARIKQSLSQ 365
            NGLIRDFLRIDLV+SPI  TGKRNDPSGSGLI DNGSD T INPFYS  +KARI+QSLSQ
Sbjct: 415  NGLIRDFLRIDLVKSPISYTGKRNDPSGSGLIYDNGSDRTNINPFYSTYSKARIQQSLSQ 474

Query: 364  NQGTIRTLLNKNKECQSLIILSSSNCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPL 185
            NQGTIRTLLN+NKECQSLIILSSSNC RMG FN+VKYHNVIKESIKR+PLIPIR  LGPL
Sbjct: 475  NQGTIRTLLNRNKECQSLIILSSSNCSRMGLFNDVKYHNVIKESIKRDPLIPIRNSLGPL 534

Query: 184  GT-IFQVANIYFLRTQNRILITKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNII 8
            GT I    + Y L T N+IL+TKYLQL+NLKQTF++L Y LMDE+G IYNPDPC  SNII
Sbjct: 535  GTQIVNFYSFYHLITHNQILVTKYLQLDNLKQTFQVLNYYLMDENGIIYNPDPC--SNII 592

Query: 7    LN 2
            LN
Sbjct: 593  LN 594


>gb|AFK81289.1| RNA polymerase beta' subunit [Camellia sinensis var. assamica]
          Length = 1374

 Score =  954 bits (2467), Expect = 0.0
 Identities = 489/643 (76%), Positives = 548/643 (85%), Gaps = 6/643 (0%)
 Frame = -3

Query: 1912 QNNQHVESEQVIAEIRAGAYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 1733
            QN+Q+VESEQVIAEIRAG  T NFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGN+HLL
Sbjct: 409  QNDQYVESEQVIAEIRAGTSTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNIHLL 468

Query: 1732 PKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERKSISSLSLTNDQVRHKLFRSD 1553
            PKTSHLW+LSGG C+SS+ PFSLHKDQDQ NAHS+SV+R  IS+ SLTNDQVRHK F SD
Sbjct: 469  PKTSHLWILSGGPCKSSLAPFSLHKDQDQTNAHSLSVKRIYISNPSLTNDQVRHKFFSSD 528

Query: 1552 LSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYLLAKRRGNRFIIPFQSIRERE 1373
             S   KK+  IP+YSELNRI+ TGH NLIYP+IL +NS LLAKRR NRFIIP  SI+ERE
Sbjct: 529  FS--GKKKDRIPDYSELNRIVCTGHYNLIYPSILHDNSDLLAKRRRNRFIIPLHSIQERE 586

Query: 1372 KEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRNSSGITKYGTVEAHSLVKKED 1193
            KE  P S     I I+IPINGIFRR SI AYFDDPRYRR  SGITKYGT++ HS VKKED
Sbjct: 587  KELMPPS----GISIEIPINGIFRRKSILAYFDDPRYRRKRSGITKYGTIDVHSFVKKED 642

Query: 1192 LVEYRGVKEFKPKYQTKVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTRIALNIRSRVG 1013
            L+EYRGVKEF+PKYQ KVDRFFFIPEEVH+LPGSSSIMVRNNSIIGIDT+I LN RSRVG
Sbjct: 643  LIEYRGVKEFRPKYQMKVDRFFFIPEEVHLLPGSSSIMVRNNSIIGIDTQITLNTRSRVG 702

Query: 1012 GLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPPGVGKTESKKWKSGIYIQRIT 833
            GLVRVER+KK+IELKIFSGD+YFPGE DKI+RHSGILIPPG+GK  SK  K+ IY+QRIT
Sbjct: 703  GLVRVERKKKRIELKIFSGDLYFPGETDKISRHSGILIPPGIGKKNSKASKNWIYVQRIT 762

Query: 832  PTKKRHFILVRPVVTYEITDGINLATPFPGDLLQERDNMKLRVVNYILRGNGKPIWGISD 653
            PTKK++F+LVRPVVTYEITDGINLAT FP DLLQERDN++L+VVNYIL GNGKPI GIS+
Sbjct: 763  PTKKKYFVLVRPVVTYEITDGINLATLFPPDLLQERDNVQLQVVNYILYGNGKPIRGISN 822

Query: 652  TSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVEVRINGLIRDFLRIDLVQSPIMCTGKR 473
            TSIQLVRTCLVLNWDQ++K           SFVE+R NGLIRDFLRIDLV+S I  TGKR
Sbjct: 823  TSIQLVRTCLVLNWDQEKK--SSSIEEARASFVEIRTNGLIRDFLRIDLVKSSISYTGKR 880

Query: 472  NDPSGSGLISDNGSDCTTINPFYSK---AKARIKQSLSQNQGTIRTLLNKNKECQSLIIL 302
             DPS SGLISDNGSD T INPF S    +KA+I+QSL+QNQGTI TLLN+NKECQSLIIL
Sbjct: 881  KDPSSSGLISDNGSDRTNINPFSSTFFYSKAKIQQSLNQNQGTIHTLLNRNKECQSLIIL 940

Query: 301  SSSNCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIFQVAN---IYFLRTQNRI 131
            SSSNC RMGPFN+VK  NVIKESIK+ PL+PIR  LGPLG  F++AN    Y+L T N+I
Sbjct: 941  SSSNCSRMGPFNDVKSSNVIKESIKKNPLMPIRNSLGPLGIAFKIANFYLFYYLITYNQI 1000

Query: 130  LITKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 2
            L+T YLQL+NLKQTF+++KY LMDE+G+IYNPDPC  SNIILN
Sbjct: 1001 LVTNYLQLDNLKQTFQVIKYYLMDENGKIYNPDPC--SNIILN 1041


>gb|ABD93804.1| RNA polymerase beta chain [Hamamelis mollis]
          Length = 863

 Score =  953 bits (2464), Expect = 0.0
 Identities = 494/606 (81%), Positives = 530/606 (87%), Gaps = 6/606 (0%)
 Frame = -3

Query: 1801 GEMHWSTDVYHAPEFTYGNVHLLPKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISV 1622
            GEMHWSTDVYHAPEFTYGNVHLLPKTSHLW+LSGGSC SS VPFSLHKDQDQ++ HS+SV
Sbjct: 1    GEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILSGGSCRSSGVPFSLHKDQDQMSVHSLSV 60

Query: 1621 ERKSISSLSLTNDQVRHKLFRSDLSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLEN 1442
            ER+ IS+LS+TNDQVRHK F SDLS   KKEG IP+YSELNRII TGHCN IYPAIL EN
Sbjct: 61   ERRYISNLSVTNDQVRHKFFSSDLS--GKKEGRIPDYSELNRIICTGHCNPIYPAILREN 118

Query: 1441 SYLLAKRRGNRFIIPFQSIREREKEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRY 1262
            S LLAKRR NRFIIPFQ I+EREKEQ PHSDSG SIEI  PINGIFRRNSI AYFDDPRY
Sbjct: 119  SDLLAKRRRNRFIIPFQPIQEREKEQMPHSDSGISIEI--PINGIFRRNSILAYFDDPRY 176

Query: 1261 RRNSSGITKYGTVEAHSLVKKEDLVEYRGVKEFKPKYQTKVDRFFFIPEEVHILPGSSSI 1082
            RRNSSGITKYGT+E HS+VKKEDL+EYRGVKEFKPKYQ KVDRFFFIPEEVHILPGSSSI
Sbjct: 177  RRNSSGITKYGTIEVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFFFIPEEVHILPGSSSI 236

Query: 1081 MVRNNSIIGIDTRIALNIRSRVGGLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGIL 902
            MVRNNSIIG+DTRI LNIRSRVGGLVRVE++KK+IELKIFSGDI+FPGE DKIARHSGIL
Sbjct: 237  MVRNNSIIGVDTRITLNIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGETDKIARHSGIL 296

Query: 901  IPPGVGKT---ESKKWKSGIYIQRITPTKKRHFILVRPVVTYEITDGINLATPFPGDLLQ 731
            IPPG GKT   ESKK K+ IY+QRITPTKK++F+LVRPVVTYEI DGINLAT F  DLLQ
Sbjct: 297  IPPGTGKTNSKESKKLKNWIYVQRITPTKKKYFVLVRPVVTYEIADGINLATLFAQDLLQ 356

Query: 730  ERDNMKLRVVNYILRGNGKPIWGISDTSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVE 551
            ERDNMKLRVVNYIL GNGKPI GISDTSIQLVRTCLVLNWDQD+K           SFVE
Sbjct: 357  ERDNMKLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDKK--SSSIGEAHASFVE 414

Query: 550  VRINGLIRDFLRIDLVQSPIMCTGKRNDPSGSGLISDNGSDCTTINPFYSKAKARIKQSL 371
            VR NGLIRDFLRIDLV+SPI  TGKRNDPSGSGLISDNGSD T INPFYS  KARI+QSL
Sbjct: 415  VRTNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISDNGSDRTNINPFYS--KARIQQSL 472

Query: 370  SQNQGTIRTLLNKNKECQSLIILSSSNCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLG 191
            SQNQG IR LLN+NKECQSLIILSSSNC RMGPFN+VKYHN IKESIKR+PLIPI+  LG
Sbjct: 473  SQNQGIIRALLNRNKECQSLIILSSSNCSRMGPFNDVKYHNGIKESIKRDPLIPIKNSLG 532

Query: 190  PLGTIFQVAN---IYFLRTQNRILITKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSS 20
            PLGT  Q+AN    Y L T N+IL+TKYLQL+NLKQTF++L Y LMDE+ RIYNPD C  
Sbjct: 533  PLGTALQIANFYSFYHLLTHNQILVTKYLQLDNLKQTFQVLNYYLMDENERIYNPDSC-- 590

Query: 19   SNIILN 2
            SNIILN
Sbjct: 591  SNIILN 596


>gb|AHE41655.1| RNA polymerase beta' subunit, partial (chloroplast) [Saxifraga
            stolonifera]
          Length = 1094

 Score =  952 bits (2461), Expect = 0.0
 Identities = 496/646 (76%), Positives = 549/646 (84%), Gaps = 9/646 (1%)
 Frame = -3

Query: 1912 QNNQHVESEQVIAEIRAGAYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 1733
            QN+Q+V+SEQVIAEIRAG YT NFKERV+KHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL
Sbjct: 413  QNDQYVQSEQVIAEIRAGTYTFNFKERVQKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 472

Query: 1732 PKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERKSISSLSLTNDQVRHKLFRSD 1553
            PKTSHLW+LSGGS  SS+VPFSLHKDQDQ+N HS+SVER+ IS+LS+T+DQVRHKLF S 
Sbjct: 473  PKTSHLWILSGGSSRSSVVPFSLHKDQDQMNVHSLSVERRYISNLSVTDDQVRHKLFSS- 531

Query: 1552 LSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYLLAKRRGNRFIIPFQSIRERE 1373
              LS KKEG IP+YSELNRII T HCNLIYPAIL ENS LLAKRR NRFIIPFQSI+ERE
Sbjct: 532  -YLSGKKEGRIPDYSELNRIIGTSHCNLIYPAILPENSDLLAKRRRNRFIIPFQSIQERE 590

Query: 1372 KEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRNSSGITKYGTVEAHSLVKKED 1193
            KEQ PHSDSG SIE  IPINGIF +NSI AYFDDPRYRRNSSGITKYGT+E HS+VKK D
Sbjct: 591  KEQMPHSDSGISIE--IPINGIFHKNSILAYFDDPRYRRNSSGITKYGTIEVHSIVKKGD 648

Query: 1192 LVEYRG---VKEFKPKYQTKVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTRIALNIRS 1022
            L+EYRG    KEFK +YQ KVDRFFFIPEEVHILPGSSSIMVRNNSIIG+ TRI L  RS
Sbjct: 649  LIEYRGGQEFKEFKSRYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVSTRITLTKRS 708

Query: 1021 RVGGLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPPGVGK---TESKKWKSGI 851
            RVGGLVR+ER+K+ IELKIFSGDI+FPGE DKIARHSGILIPPG GK    ESKK K G+
Sbjct: 709  RVGGLVRMERKKRGIELKIFSGDIHFPGETDKIARHSGILIPPGTGKKNSKESKKLKKGL 768

Query: 850  YIQRITPTKKRHFILVRPVVTYEITDGINLATPFPGDLLQERDNMKLRVVNYILRGNGKP 671
            Y+QRITPTKK++F+LVRPVVTYEI DGINLAT FPGD LQERDNMKLRVVNYIL GNGK 
Sbjct: 769  YVQRITPTKKKYFVLVRPVVTYEIADGINLATLFPGDPLQERDNMKLRVVNYILYGNGKT 828

Query: 670  IWGISDTSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVEVRINGLIRDFLRIDLVQSPI 491
            I GISDTSIQLVRTCLVLNW+QD+K           SFVEVRI GLIRDFLRI +V+SPI
Sbjct: 829  IRGISDTSIQLVRTCLVLNWEQDKK--SSSIGEAHASFVEVRITGLIRDFLRIHVVKSPI 886

Query: 490  MCTGKRNDPSGSGLISDNGSDCTTINPFYSKAKARIKQSLSQNQGTIRTLLNKNKECQSL 311
              TGK N PS SGLI DNGSD T INPFYSKA   I+Q LSQNQGTIR L ++NKE QSL
Sbjct: 887  SYTGKSNGPSSSGLIYDNGSDRTNINPFYSKAS--IQQPLSQNQGTIRMLFDRNKEFQSL 944

Query: 310  IILSSSNCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIFQVAN---IYFLRTQ 140
            +ILSSSNC +MGPFN+VKYHNVIK++I+R+ LIPI+  LGPLGT  Q+AN    Y L T 
Sbjct: 945  LILSSSNCSQMGPFNDVKYHNVIKKAIQRDSLIPIQNSLGPLGTALQIANFSSFYDLITH 1004

Query: 139  NRILITKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 2
            N+ILIT YLQL+N+K +F++L Y LMDE+GRIYNP+PC  SNIILN
Sbjct: 1005 NQILITNYLQLDNMKHSFQLLNYYLMDENGRIYNPNPC--SNIILN 1048


>ref|YP_008592747.1| DNA-directed RNA polymerase beta'' subunit (chloroplast) [Camellia
            cuspidata] gi|537362405|gb|AGU44213.1| DNA-directed RNA
            polymerase beta'' subunit (chloroplast) [Camellia
            cuspidata]
          Length = 1378

 Score =  952 bits (2461), Expect = 0.0
 Identities = 487/643 (75%), Positives = 548/643 (85%), Gaps = 6/643 (0%)
 Frame = -3

Query: 1912 QNNQHVESEQVIAEIRAGAYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 1733
            QN+Q+VESEQVIAEIRAG  T NFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGN+HLL
Sbjct: 413  QNDQYVESEQVIAEIRAGTSTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNIHLL 472

Query: 1732 PKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERKSISSLSLTNDQVRHKLFRSD 1553
            PKTSHLW+LSGG C+SS+ PFSLHKDQDQ NAHS+SV+R  IS+ SLTNDQVRHK F SD
Sbjct: 473  PKTSHLWILSGGPCKSSLAPFSLHKDQDQTNAHSLSVKRIYISNPSLTNDQVRHKFFSSD 532

Query: 1552 LSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYLLAKRRGNRFIIPFQSIRERE 1373
             S   KK+  IP+YSELNRI+ TGH NLIYP+IL +NS LLAKRR NRFIIP  SI+ERE
Sbjct: 533  FS--GKKKDRIPDYSELNRIVCTGHYNLIYPSILHDNSDLLAKRRRNRFIIPLHSIQERE 590

Query: 1372 KEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRNSSGITKYGTVEAHSLVKKED 1193
            KE  P S     I I+IPINGIFRR SI AYFDDPRYRR  SGITKYGT++ HS VKKED
Sbjct: 591  KELMPPS----GISIEIPINGIFRRKSILAYFDDPRYRRKRSGITKYGTIDVHSFVKKED 646

Query: 1192 LVEYRGVKEFKPKYQTKVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTRIALNIRSRVG 1013
            L+EYRGVKEF+PKYQ KVDRFFFIPEEVH+LPGSSSIMVRNNSIIG+DT+I LN RSRVG
Sbjct: 647  LIEYRGVKEFRPKYQMKVDRFFFIPEEVHLLPGSSSIMVRNNSIIGVDTQITLNTRSRVG 706

Query: 1012 GLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPPGVGKTESKKWKSGIYIQRIT 833
            GLVRVER+KK+IELKIFSGD++FPGE DKI+RHSGILIPPG+GK  SK  K+ IY+QRIT
Sbjct: 707  GLVRVERKKKRIELKIFSGDLHFPGETDKISRHSGILIPPGIGKKNSKASKNWIYVQRIT 766

Query: 832  PTKKRHFILVRPVVTYEITDGINLATPFPGDLLQERDNMKLRVVNYILRGNGKPIWGISD 653
            PTKK++F+LVRPVVTYEITDGINLAT FP DLLQERDN++L+VVNYIL GNGKPI GIS+
Sbjct: 767  PTKKKYFVLVRPVVTYEITDGINLATLFPPDLLQERDNVQLQVVNYILYGNGKPIRGISN 826

Query: 652  TSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVEVRINGLIRDFLRIDLVQSPIMCTGKR 473
            TSIQLVRTCLVLNWDQ++K           SFVE+R NGLIRDFLRIDLV+S I  TGKR
Sbjct: 827  TSIQLVRTCLVLNWDQEKK--SSSIEEARASFVEIRTNGLIRDFLRIDLVKSSISYTGKR 884

Query: 472  NDPSGSGLISDNGSDCTTINPFYSK---AKARIKQSLSQNQGTIRTLLNKNKECQSLIIL 302
             DPS SGLISDNGSD T INPF S    +KA+I+QSL+QNQGTI TLLN+NKECQSLIIL
Sbjct: 885  KDPSSSGLISDNGSDRTNINPFSSTFFYSKAKIQQSLNQNQGTIHTLLNRNKECQSLIIL 944

Query: 301  SSSNCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIFQVAN---IYFLRTQNRI 131
            SSSNC RMGPFN+VK  NVIKESIK+ PL+PIR  LGPLG  F++AN    Y+L T N+I
Sbjct: 945  SSSNCSRMGPFNDVKSSNVIKESIKKNPLMPIRNSLGPLGIAFKIANFYLFYYLITYNQI 1004

Query: 130  LITKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 2
            L+T YLQL+NLKQTF+++KY LMDE+G+IYNPDPC  SNIILN
Sbjct: 1005 LVTNYLQLDNLKQTFQVIKYYLMDENGKIYNPDPC--SNIILN 1045


>gb|AHE41654.1| RNA polymerase beta' subunit (chloroplast) [Ribes fasciculatum var.
            chinense]
          Length = 1378

 Score =  952 bits (2460), Expect = 0.0
 Identities = 500/642 (77%), Positives = 544/642 (84%), Gaps = 5/642 (0%)
 Frame = -3

Query: 1912 QNNQHVESEQVIAEIRAGAYTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 1733
            +N+Q+VESEQVIAEIRAG  T NFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL
Sbjct: 413  KNDQYVESEQVIAEIRAGTSTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLL 472

Query: 1732 PKTSHLWVLSGGSCESSIVPFSLHKDQDQINAHSISVERKSISSLSLTNDQVRHKLFRSD 1553
            PKTSHLW+LSG SC S++VPFSLHKDQDQ+N HS+SVERKSIS+LS+TN+QVRHKL    
Sbjct: 473  PKTSHLWILSGSSCRSTVVPFSLHKDQDQLNVHSLSVERKSISNLSVTNEQVRHKL---- 528

Query: 1552 LSLSDKKEGGIPNYSELNRIIWTGHCNLIYPAILLENSYLLAKRRGNRFIIPFQSIRERE 1373
             S SD+    IPNYSELNRII   HCNLIYPAIL EN  LL+KRR NRFIIPFQSI+ERE
Sbjct: 529  -SSSDRSGKKIPNYSELNRIIGIDHCNLIYPAILHENYDLLSKRRRNRFIIPFQSIQERE 587

Query: 1372 KEQPPHSDSGSSIEIQIPINGIFRRNSIFAYFDDPRYRRNSSGITKYGTVEAHSLVKKED 1193
            KEQ  HSDSG  I I+IP NGIFR+NSI AYFDDPRYRRNSSGITKYGT+E HS+VKKED
Sbjct: 588  KEQMRHSDSG--ILIEIPRNGIFRKNSILAYFDDPRYRRNSSGITKYGTIEVHSIVKKED 645

Query: 1192 LVEYRGVKEFKPKYQTKVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTRIALNIRSRVG 1013
            L+EYRG KEFKP+YQ +VD FFFIPEEVHILPGSSSIMVRNNSIIG+ TRI LN RSRVG
Sbjct: 646  LIEYRGGKEFKPRYQMQVDPFFFIPEEVHILPGSSSIMVRNNSIIGVSTRITLNKRSRVG 705

Query: 1012 GLVRVERQKKKIELKIFSGDIYFPGEIDKIARHSGILIPPGVGKTESK--KWKSGIYIQR 839
            GLVRVER+K  IELKIFSGDIYFPGE DKIARHSGILIPPG GK  SK  K K+ +Y+QR
Sbjct: 706  GLVRVERKKNGIELKIFSGDIYFPGETDKIARHSGILIPPGKGKLNSKEFKLKNWLYVQR 765

Query: 838  ITPTKKRHFILVRPVVTYEITDGINLATPFPGDLLQERDNMKLRVVNYILRGNGKPIWGI 659
            ITPTKK++F+LVRPVVTYEI DGINL   FP D LQERDNMKLRVVNYIL GNGKPI GI
Sbjct: 766  ITPTKKKYFVLVRPVVTYEIADGINLTKLFPQDPLQERDNMKLRVVNYILYGNGKPIRGI 825

Query: 658  SDTSIQLVRTCLVLNWDQDEKXXXXXXXXXXXSFVEVRINGLIRDFLRIDLVQSPIMCTG 479
            SDTSIQLVRTCLVLNWDQD+K           SFVEVR NGLIRDFLRIDLV+SPI  TG
Sbjct: 826  SDTSIQLVRTCLVLNWDQDKK--RSSIGEAHASFVEVRTNGLIRDFLRIDLVKSPISYTG 883

Query: 478  KRNDPSGSGLISDNGSDCTTINPFYSKAKARIKQSLSQNQGTIRTLLNKNKECQSLIILS 299
            KRNDPS SGLISDNG D T INPFYS  KAR++QSLSQNQGTIRTLLN+NKE +SLIILS
Sbjct: 884  KRNDPSSSGLISDNGPDRTNINPFYS--KARLQQSLSQNQGTIRTLLNRNKEFKSLIILS 941

Query: 298  SSNCFRMGPFNNVKYHNVIKESIKREPLIPIRKFLGPLGTIFQVAN---IYFLRTQNRIL 128
            SSNC RMGP N+VKYHNV KESIKR+  IPIR  LGPLG   Q+AN   +Y L T N+IL
Sbjct: 942  SSNCSRMGPLNDVKYHNVKKESIKRDFPIPIRNSLGPLGIAPQIANFYSLYDLITHNQIL 1001

Query: 127  ITKYLQLENLKQTFRILKYSLMDESGRIYNPDPCSSSNIILN 2
            ITKYLQL+NLKQT ++LKY LMDE+G IYNPD C  SNIILN
Sbjct: 1002 ITKYLQLDNLKQTLKVLKYYLMDENGIIYNPDLC--SNIILN 1041