BLASTX nr result
ID: Paeonia24_contig00011304
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia24_contig00011304
(1995 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ... 639 e-180
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera] 623 e-175
ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The... 572 e-160
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [... 546 e-152
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu... 541 e-151
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-... 541 e-151
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr... 540 e-151
ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun... 526 e-146
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-... 507 e-141
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-... 486 e-134
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-... 483 e-133
gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus... 473 e-130
emb|CAD20832.1| sigma factor [Spinacia oleracea] 472 e-130
ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC ... 463 e-127
ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-... 458 e-126
ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-... 452 e-124
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp.... 437 e-119
ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Caps... 434 e-119
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi... 431 e-118
ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha... 427 e-117
>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product
[Vitis vinifera]
Length = 561
Score = 639 bits (1647), Expect = e-180
Identities = 337/559 (60%), Positives = 391/559 (69%), Gaps = 1/559 (0%)
Frame = +3
Query: 174 MGVGFRLHLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXXMSVSVPSVISGESEILYDD 353
MG+GFRL+LKW FP+ S PSV S + E LY D
Sbjct: 1 MGMGFRLNLKWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKD 60
Query: 354 PLKAYACSS-ALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSLQ 530
P K +ACSS ALQT END S ME MK K+GK S L + S GED SA + LQ
Sbjct: 61 PFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQ 120
Query: 531 ARKAPYFKXXXXXXXXXXXXFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXXF 710
A KA F FADSN + LERDIMVQLGR+GALKLFQ C F
Sbjct: 121 ASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSF 180
Query: 711 DLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHALSLPSKTK 890
DL P + I E Q +DDH+ +VV SGKKE RK +RER LEKAD I+A LPSKT
Sbjct: 181 DLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTI 240
Query: 891 RKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISLS 1070
RK GRP+V+ VKR N+R +RL+ A NE EMSKGVK+VANLERIR TLE++ GHV SLS
Sbjct: 241 RKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLS 300
Query: 1071 SWAKAAGVDKNVLQKQLRFGWYCRDELVRSTHPLIKYLARNYSGMGVAFEDLLQAGNMGV 1250
+WA+AAGVDK VLQ+QL+FGWYCRDEL+RSTH L+ Y+ARNY GMGVAFED+LQAGN+GV
Sbjct: 301 NWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGV 360
Query: 1251 LQGAEKFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLYK 1430
LQGAE+FDHT+GYRFSTY QYW+RKS+S LV RHARG+ IPFTL+R I QIQKARK LYK
Sbjct: 361 LQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYK 420
Query: 1431 SHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESPE 1610
SHG+YP D +IAKFTGLSLAKI+SA CLR+VGS D+ D LEF PDTSI+SPE
Sbjct: 421 SHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPE 480
Query: 1611 EVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIEK 1790
E M Q RKDI+ LLKGLD RE+Q+L+LRYG G+ + KSLEEIGR F+VSKEWIRK+EK
Sbjct: 481 EGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEK 540
Query: 1791 AALTKLRDEETRTKLSHYL 1847
AL LRDEE L HY+
Sbjct: 541 TALANLRDEEICQNLRHYV 559
>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 623 bits (1606), Expect = e-175
Identities = 326/515 (63%), Positives = 377/515 (73%), Gaps = 1/515 (0%)
Frame = +3
Query: 306 SVPSVISGESEILYDDPLKAYACSS-ALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDS 482
S PSV S + E LY DP K +ACSS ALQT END S ME MK K+GK S L + S
Sbjct: 95 SFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNAS 154
Query: 483 CFLFGEDDSAFLGSLQARKAPYFKXXXXXXXXXXXXFADSNALSLERDIMVQLGRIGALK 662
GED SA + LQA KA F FADSN + LERDIMVQLGR+GALK
Sbjct: 155 QAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALK 214
Query: 663 LFQTCXXXXXXXXXXFDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTL 842
LFQ C FDL P + I E Q +DDH+ +VV SGKKE RK +RER L
Sbjct: 215 LFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERAL 274
Query: 843 EKADKIHALSLPSKTKRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLER 1022
EKAD I+A LPSKT RK GRP+V+ VKR N+R +RL+ A NE EMSKGVK+VANLER
Sbjct: 275 EKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLER 334
Query: 1023 IRLTLEKDTGHVISLSSWAKAAGVDKNVLQKQLRFGWYCRDELVRSTHPLIKYLARNYSG 1202
IR TLE++ GHV SLS+WA+AAGVDK VLQ+QL+FGWYCRDEL+RSTH L+ Y+ARNY G
Sbjct: 335 IRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRG 394
Query: 1203 MGVAFEDLLQAGNMGVLQGAEKFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTL 1382
MGVAFED+LQAGN+GVLQGAE+FDHT+GYRFSTY QYW+RKS+S LV RHARG+ IPFTL
Sbjct: 395 MGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTL 454
Query: 1383 SRRINQIQKARKVLYKSHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLN 1562
+R I QIQKARK LYKSHG+YP D +IAKFTGLSLAKI+SA CLR+VGS D+ D
Sbjct: 455 NRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWG 514
Query: 1563 VKFLEFMPDTSIESPEEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEI 1742
LEF PDTSI+SPEE M Q RKDI+ LLKGLD RE+Q+L+LRYG G+ + KSLEEI
Sbjct: 515 ATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEI 574
Query: 1743 GRLFHVSKEWIRKIEKAALTKLRDEETRTKLSHYL 1847
GR F+VSKEWIRK+EK AL LRDEE L HY+
Sbjct: 575 GRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYV 609
>ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit
C, putative [Theobroma cacao]
Length = 848
Score = 572 bits (1473), Expect = e-160
Identities = 299/514 (58%), Positives = 370/514 (71%), Gaps = 2/514 (0%)
Frame = +3
Query: 312 PSVISGESEILYDDPLKAYACSSALQTLENDNSKMEDMKFKVGKGSLNHLHNLS--GDSC 485
PS + + DPLKAYA S+A QTLE ++E+MK +GKGS H H+L+ +
Sbjct: 334 PSRLPSSGVLSLKDPLKAYASSAAPQTLEKGCLEIEEMKVNIGKGSQAHSHSLTMIDKTH 393
Query: 486 FLFGEDDSAFLGSLQARKAPYFKXXXXXXXXXXXXFADSNALSLERDIMVQLGRIGALKL 665
L G D S+ S QA KA ++ FADS+ L+LER+I++QLGR GALKL
Sbjct: 394 ELIGGDKSSSRTSPQACKASHYSLLMENLDVLEETFADSDVLTLEREILLQLGRFGALKL 453
Query: 666 FQTCXXXXXXXXXXFDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLE 845
F TC DLSD P + G+ M ++D NIVVCS KK+ RK RER LE
Sbjct: 454 FNTCLSRTLKASNILDLSDVPANS-GDCNMNLSVDGQKDNIVVCSRKKKQRKKIRERALE 512
Query: 846 KADKIHALSLPSKTKRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERI 1025
I +PS T R+ +P V+ KR S++RSRRL +A NE EMSKGVKVVANLERI
Sbjct: 513 NPTIISTQLMPSNTLHGRFQKPKVSSAKRVSDSRSRRLRIARNEAEMSKGVKVVANLERI 572
Query: 1026 RLTLEKDTGHVISLSSWAKAAGVDKNVLQKQLRFGWYCRDELVRSTHPLIKYLARNYSGM 1205
R TLE++TG SLS WA+AAGV + VLQ+ LRFGWYCRDEL+RST L+ Y ARNY G+
Sbjct: 573 RTTLEEETGRAASLSCWAEAAGVSEKVLQQHLRFGWYCRDELLRSTRSLVLYFARNYRGL 632
Query: 1206 GVAFEDLLQAGNMGVLQGAEKFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLS 1385
G+A EDL+QAG++GVLQGAE+FDHTRGYRFSTY Q+W+RKS+S +V RHARGI +P TLS
Sbjct: 633 GIAHEDLIQAGSLGVLQGAERFDHTRGYRFSTYVQFWIRKSVSRIVARHARGIQVPCTLS 692
Query: 1386 RRINQIQKARKVLYKSHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNV 1565
R I QIQKARK L KSHGKYP ++ IAKFTGLSLAKI+SA+KC+R+VGS+D+K+GD +N
Sbjct: 693 RAIVQIQKARKALSKSHGKYPDEDAIAKFTGLSLAKIRSANKCMRVVGSIDQKIGDCMNA 752
Query: 1566 KFLEFMPDTSIESPEEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIG 1745
K+LEF+PD S+ SPE+ VM QHM++DI+ LL GLD RE+QV++LRYGL KSLEEIG
Sbjct: 753 KYLEFIPDLSVRSPEKTVMRQHMKEDIHDLLNGLDARERQVMVLRYGLKGSPPKSLEEIG 812
Query: 1746 RLFHVSKEWIRKIEKAALTKLRDEETRTKLSHYL 1847
RLFHVSKEWIR+IE A+ KLRD+ET LSHYL
Sbjct: 813 RLFHVSKEWIRRIEMKAMKKLRDKETCRNLSHYL 846
>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 560
Score = 546 bits (1406), Expect = e-152
Identities = 294/560 (52%), Positives = 385/560 (68%), Gaps = 2/560 (0%)
Frame = +3
Query: 174 MGVGFRLHLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXXMS-VSVPSVISGESEILYD 350
MG GFRL+LK FP S +S SVIS E +I +
Sbjct: 1 MGFGFRLNLKLDFPFHSPNSPSRLSSSPSSSFVRGREATSYQSRLSFLSVISEEGDIAHR 60
Query: 351 DPLKAYACSSALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSLQ 530
DPLK YA S A+QT+EN++S+ E K GK S L N+ GD+ ED S +
Sbjct: 61 DPLKTYAYSYAVQTVENEHSQGEGFKVNFGKRSHFGL-NIIGDAEVSLKEDIFVSPSSTK 119
Query: 531 ARKAPYFKXXXXXXXXXXXXFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXXF 710
R + F FADS+A LE DI++QLG++GALKLF TC
Sbjct: 120 ERTSR-FSLLLENLNILEQSFADSDASKLEEDILLQLGKLGALKLFNTCLTRTLETTNVL 178
Query: 711 DLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRER-TLEKADKIHALSLPSKT 887
++SD ++IGE + ++ +VV + KKE RK RRER + K K +L LPS+
Sbjct: 179 EVSDVHTEIIGECNINGTSINNQIKVVVHTAKKEERKSRRERASARKGHKSPSLPLPSRP 238
Query: 888 KRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISL 1067
+ +P V+ K+ S ++SRRLI+A NE EM++G+KV+A+LE+IR TLE++T V+SL
Sbjct: 239 IQSGSEKPTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSL 298
Query: 1068 SSWAKAAGVDKNVLQKQLRFGWYCRDELVRSTHPLIKYLARNYSGMGVAFEDLLQAGNMG 1247
S WA+AAG+D VLQ+QL FGWYCRDEL++ST L+ Y ARNY G G+A EDLLQAGN+G
Sbjct: 299 SCWAEAAGLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLG 358
Query: 1248 VLQGAEKFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLY 1427
VL+GAE+FDHTRGYRFSTY QYW+RKS+S +V+R ARGI IP TLSR I QIQKARK L
Sbjct: 359 VLEGAERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQKARKALT 418
Query: 1428 KSHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESP 1607
S+GKYP D++IAK+TGLSLAKI+SAS+CLR+VGS+D+K+G+SLN K+LEF+PDTS++SP
Sbjct: 419 TSNGKYPDDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIGESLNAKYLEFLPDTSVQSP 478
Query: 1608 EEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIE 1787
EEVVM QHM +D++ LL+ LD RE+QVL+LR+GL D++ KSLEEIGR FHVSKEW+R++E
Sbjct: 479 EEVVMRQHMIQDMHNLLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHFHVSKEWVRRLE 538
Query: 1788 KAALTKLRDEETRTKLSHYL 1847
K +T+LR+EET L HY+
Sbjct: 539 KRVMTRLRNEETCRNLRHYI 558
>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
gi|222854562|gb|EEE92109.1| hypothetical protein
POPTR_0006s25090g [Populus trichocarpa]
Length = 559
Score = 541 bits (1395), Expect = e-151
Identities = 290/561 (51%), Positives = 372/561 (66%), Gaps = 1/561 (0%)
Frame = +3
Query: 174 MGVGFRLHLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXXMSVSVPSVISGESEILYDD 353
MGVGFRL KWG P+Q +S SV+S E +IL
Sbjct: 1 MGVGFRLTPKWGSPMQSHSATNSTSMFSSFSARGMEASVNQARLSFLSVVSEEGDILNKH 60
Query: 354 PLKAYACSSALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSLQA 533
K++ACSSA Q +END +ME +K V K S ++N+ G+ E+ S L+
Sbjct: 61 SFKSFACSSAAQNVENDCLQMERLKMNVDKTSHVSINNMMGNDKVSVEEEISTSHTRLRE 120
Query: 534 RKAPYFKXXXXXXXXXXXXFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXXFD 713
R AD +AL LERDI++QLGR+GAL+ F C D
Sbjct: 121 RMTSRISFLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNVLD 180
Query: 714 LSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTL-EKADKIHALSLPSKTK 890
LS P + GE + + + D VV +GKKE RKFRRER + K +LSLPSKT
Sbjct: 181 LSAVPTENTGESKTDGMLGDLTGKTVVRTGKKEERKFRRERAASDNGKKTTSLSLPSKTV 240
Query: 891 RKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISLS 1070
+ +P VKR S++ SRR ++A NE +M++GVKV ++LERIR TLE++TG V+SLS
Sbjct: 241 QNNLPKPTF--VKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLS 298
Query: 1071 SWAKAAGVDKNVLQKQLRFGWYCRDELVRSTHPLIKYLARNYSGMGVAFEDLLQAGNMGV 1250
WA+A G+DK VLQ+QL+FGWYCRDEL+++TH L+ Y+ARNY GMG+A EDL+QAGN+G+
Sbjct: 299 CWAEATGLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGL 358
Query: 1251 LQGAEKFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLYK 1430
LQGAE+FD TRGYRFSTY QYW+RKS+ +V RHARGI IP+ LSR IN+IQKARK L
Sbjct: 359 LQGAERFDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALSN 418
Query: 1431 SHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESPE 1610
SHG+YP D ++AKFTGLSLAKI+SA KCLR+V SLD+K+G+ K+ EF+PD SI++PE
Sbjct: 419 SHGRYPDDWEVAKFTGLSLAKIESAQKCLRVVASLDQKIGEGHYAKYSEFIPDMSIQNPE 478
Query: 1611 EVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIEK 1790
E VM QHMR++IY LL+GLD REKQV++LRYG D++ KSL EIGRLF VSKE +RKIEK
Sbjct: 479 EAVMRQHMREEIYDLLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLFRVSKERVRKIEK 538
Query: 1791 AALTKLRDEETRTKLSHYLKL 1853
+ KLRDE R LS Y+ L
Sbjct: 539 KIMIKLRDEGIRRNLSRYMIL 559
>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
Length = 534
Score = 541 bits (1393), Expect = e-151
Identities = 290/561 (51%), Positives = 379/561 (67%), Gaps = 1/561 (0%)
Frame = +3
Query: 174 MGVGFRLHLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXXMSVSVPSVISGESEILYDD 353
MG+GFRL+LKW PVQ +S S IS +S + D
Sbjct: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60
Query: 354 PLKAYACSSA-LQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSLQ 530
P+KAY CS QT+END S+ E+++ K SC G+D S+
Sbjct: 61 PVKAYTCSFVNTQTVENDYSETEEIRQK-------------STSCI--GQDASS------ 99
Query: 531 ARKAPYFKXXXXXXXXXXXXFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXXF 710
F+ FADS+AL LER+I+ QLG++GALKLF +
Sbjct: 100 ---RSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156
Query: 711 DLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHALSLPSKTK 890
DLSD + E +M+D+ D HM I+V S +K RK + R E++ + + LSLPS+
Sbjct: 157 DLSDVHTE---EQKMDDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETYLLSLPSEAL 213
Query: 891 RKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISLS 1070
++ +P + +R N+R RRL++A NE EMSKGV+VVANLERI+ TLEK++G L+
Sbjct: 214 QEGLKQPTIFSAERALNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLN 273
Query: 1071 SWAKAAGVDKNVLQKQLRFGWYCRDELVRSTHPLIKYLARNYSGMGVAFEDLLQAGNMGV 1250
WA+AAGV + VL++ L FGWYCR+EL++ST PL+ +LARNY G+G+ F DLLQAGN+GV
Sbjct: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
Query: 1251 LQGAEKFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLYK 1430
LQGAE+FDHTRGY+FSTY QYW+RKSIS +V RHARGI IP L+R I++IQKARK L
Sbjct: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393
Query: 1431 SHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESPE 1610
SHGKYP D +IAK+TGLSLA+I+SAS+CLRIVGS+D+K+GD LN K+LEF PD S++SP+
Sbjct: 394 SHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPK 453
Query: 1611 EVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIEK 1790
E+VM QHM+KD++++L+ LD RE+QVL+LRYGL DHR KSLEEIG+LFHVSKEWIRK+EK
Sbjct: 454 EIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513
Query: 1791 AALTKLRDEETRTKLSHYLKL 1853
A+TKLRD ET LSH+L L
Sbjct: 514 KAMTKLRDSETCRDLSHFLVL 534
>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
gi|557553989|gb|ESR64003.1| hypothetical protein
CICLE_v10007968mg [Citrus clementina]
Length = 534
Score = 540 bits (1391), Expect = e-151
Identities = 291/561 (51%), Positives = 378/561 (67%), Gaps = 1/561 (0%)
Frame = +3
Query: 174 MGVGFRLHLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXXMSVSVPSVISGESEILYDD 353
MG+GFRL+LKW PVQ +S S IS +S + D
Sbjct: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60
Query: 354 PLKAYACSSA-LQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSLQ 530
P+KAY CS QT+END S+ E+++ K SC G+D S+
Sbjct: 61 PVKAYTCSFVNTQTVENDYSETEEIRQK-------------STSCI--GQDASS------ 99
Query: 531 ARKAPYFKXXXXXXXXXXXXFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXXF 710
F+ FADS+AL LER+I+ QLG++GALKLF +
Sbjct: 100 ---RSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156
Query: 711 DLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHALSLPSKTK 890
DLSD + E +M D+ D HM I+V S +K RK + R E++ + LSLPS+
Sbjct: 157 DLSDVHTE---EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEAL 213
Query: 891 RKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISLS 1070
++ +P + +R N+R RRL++A NE EMSKGV+VVANLERI+ TLEK++G SL+
Sbjct: 214 QEGLKQPTIFSPERALNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN 273
Query: 1071 SWAKAAGVDKNVLQKQLRFGWYCRDELVRSTHPLIKYLARNYSGMGVAFEDLLQAGNMGV 1250
WA+AAGV + VL++ L FGWYCR+EL++ST PL+ +LARNY G+G+ F DLLQAGN+GV
Sbjct: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
Query: 1251 LQGAEKFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLYK 1430
LQGAE+FDHTRGY+FSTY QYW+RKSIS +V RHARGI IP L+R I++IQKARK L
Sbjct: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393
Query: 1431 SHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESPE 1610
SHGKYP D +IAK+TGLSLA+I+SAS+CLRIVGS+D+K+GD LN K+LEF PD S++SP+
Sbjct: 394 SHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPK 453
Query: 1611 EVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIEK 1790
E+VM QHM+KD++++L+ LD RE+QVL+LRYGL DHR KSLEEIG+LFHVSKEWIRK+EK
Sbjct: 454 EIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513
Query: 1791 AALTKLRDEETRTKLSHYLKL 1853
A+TKLRD ET LSH+L L
Sbjct: 514 KAMTKLRDSETCRDLSHFLVL 534
>ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
gi|462419859|gb|EMJ24122.1| hypothetical protein
PRUPE_ppa003696mg [Prunus persica]
Length = 555
Score = 526 bits (1355), Expect = e-146
Identities = 296/560 (52%), Positives = 374/560 (66%), Gaps = 2/560 (0%)
Frame = +3
Query: 174 MGVGFRLHLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXXMS-VSVPSVISGESEILYD 350
MG+GFRL+LK GFPV + +S SVIS E E
Sbjct: 1 MGLGFRLNLKCGFPVHSSHWQTTSPSKISSTSVRGREGSFNSARLSFLSVISEEGEASSK 60
Query: 351 DPLKAYACSSAL-QTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSL 527
DPLK Y SA Q LE+ S++E++K + + D+ E L
Sbjct: 61 DPLKVYTFPSASPQILEDGVSELEEVKT-----AFRRVPKSFSDNQMPVAEGKFISSKGL 115
Query: 528 QARKAPYFKXXXXXXXXXXXXFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXX 707
+A A +F FA S+ L LE++I++QL R+GALKLF C
Sbjct: 116 EACTASHFSLLLQNLNVLEETFATSDVLKLEKEILLQLARLGALKLFDICLSRTLKTSSF 175
Query: 708 FDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHALSLPSKT 887
DLSD P + E +ME D+++ I+V SGKKE R+ R+ RT + A + + SLP KT
Sbjct: 176 LDLSDIPTVPVEEGKMERKEDNNVGEIIVRSGKKEERRSRK-RTSDNAI-VSSNSLPPKT 233
Query: 888 KRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISL 1067
K +P ++ KR SN RSRRL ++ NE EMS GVKV+A+LERI+ TLEK+TG V +L
Sbjct: 234 IWKGLKKPTLSSGKRASNYRSRRLTISKNEAEMSIGVKVIADLERIKETLEKETGKVATL 293
Query: 1068 SSWAKAAGVDKNVLQKQLRFGWYCRDELVRSTHPLIKYLARNYSGMGVAFEDLLQAGNMG 1247
WA+AAGV + VL + LRFGWYC+DEL+RST L+ YLARNY G+GVA +DL+QAGN+G
Sbjct: 294 RCWAEAAGVHEKVLLQHLRFGWYCQDELIRSTRSLVLYLARNYRGLGVALDDLMQAGNLG 353
Query: 1248 VLQGAEKFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLY 1427
+LQGAE+FDH+RGYRFSTY QYW+RKS+S LV +HARG+ IPFTLS+ INQIQKARK Y
Sbjct: 354 LLQGAERFDHSRGYRFSTYVQYWIRKSMSRLVAQHARGVQIPFTLSKAINQIQKARKANY 413
Query: 1428 KSHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESP 1607
SH KYP DE+IAK TGLSLA+I+SAS CLR+VGS+D KM +S + ++EF PDTS++SP
Sbjct: 414 NSHMKYPDDEEIAKITGLSLARIRSASTCLRVVGSVDHKMWESSDGTYMEFTPDTSLKSP 473
Query: 1608 EEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIE 1787
EE VM QHM+KDI+ LLKGL+LRE+QVL+LRYGL ++ KSLEEIGRLFHVSKEWIRKIE
Sbjct: 474 EETVMRQHMKKDIHDLLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVSKEWIRKIE 533
Query: 1788 KAALTKLRDEETRTKLSHYL 1847
K AL KLR EE+ LSHYL
Sbjct: 534 KKALMKLRVEESHKYLSHYL 553
>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
subsp. vesca]
Length = 545
Score = 507 bits (1306), Expect = e-141
Identities = 287/561 (51%), Positives = 368/561 (65%), Gaps = 2/561 (0%)
Frame = +3
Query: 174 MGVGFRLHLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXXMS-VSVPSVISGESEILYD 350
MG+GFRL+LK GFP+ + +S SVIS E E
Sbjct: 1 MGLGFRLNLKCGFPIHNSHWQTNSPSKLPSSSVRGREGSFSSAGLSFLSVISEECETSSK 60
Query: 351 DPLKAYACSSAL-QTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSL 527
DPLK Y C SA Q L++ S+ME+ +N S + + + +F+ S
Sbjct: 61 DPLKVYTCPSASPQLLDDGLSEMEE--------KMNPRRMSKSGSANMIDDKEYSFMSSA 112
Query: 528 QARKAPYFKXXXXXXXXXXXXFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXX 707
R + Y FADS LE++I++QLGR+GALKLF+ C
Sbjct: 113 GLRTSHY-TLLLQNLNVLEETFADSGVSKLEKEILLQLGRLGALKLFEICLSRTLKTSSF 171
Query: 708 FDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHALSLPSKT 887
DLSD P + I + + E +V SGKKE +K R+ + + K + +LP K
Sbjct: 172 LDLSDIPTEPIEKHKTE-------RKNIVRSGKKEEQKSRKRTSYDS--KKFSGTLPVKQ 222
Query: 888 KRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISL 1067
R+ + +P + V+R SN+RSRRL++A NE EMS GVKV+A+LER+++TLEK+TG V +L
Sbjct: 223 MREGFKKPNPSSVRRASNSRSRRLMMAKNEAEMSVGVKVIADLERLKVTLEKETGKVPTL 282
Query: 1068 SSWAKAAGVDKNVLQKQLRFGWYCRDELVRSTHPLIKYLARNYSGMGVAFEDLLQAGNMG 1247
WA+AAGVD+ VLQ+QL FGWYC+DELVRST L+ YLARNY G+GVA +DLLQAGN+G
Sbjct: 283 RCWAEAAGVDEKVLQQQLHFGWYCQDELVRSTRSLVLYLARNYRGLGVALDDLLQAGNLG 342
Query: 1248 VLQGAEKFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLY 1427
+LQGAE+FD +RGYRFSTY QYW+RKS+S LV +HARGI IP TLS+ IN+IQKARK Y
Sbjct: 343 LLQGAERFDPSRGYRFSTYVQYWIRKSMSRLVAQHARGIKIPNTLSKAINRIQKARKANY 402
Query: 1428 KSHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESP 1607
SH KYP DE+IAK TGLSLAKI SAS+CLR+VGS+D K+ + ++EF PD ++E+P
Sbjct: 403 NSHMKYPDDEEIAKITGLSLAKISSASRCLRVVGSVDHKIWECSAGTYMEFTPDIAVETP 462
Query: 1608 EEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIE 1787
EE VM QHM+ DI+ LL+GL+ REK+VL LRYGL KSLEEIGRLFHVSKEWIRKIE
Sbjct: 463 EESVMRQHMKNDIHVLLEGLNSREKKVLALRYGLNYCNPKSLEEIGRLFHVSKEWIRKIE 522
Query: 1788 KAALTKLRDEETRTKLSHYLK 1850
K ALTKLR+EE+ LSHYLK
Sbjct: 523 KNALTKLRNEESNKNLSHYLK 543
>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum]
Length = 555
Score = 486 bits (1251), Expect = e-134
Identities = 262/555 (47%), Positives = 354/555 (63%)
Frame = +3
Query: 180 VGFRLHLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXXMSVSVPSVISGESEILYDDPL 359
+GFRLHLKWGF VQ + S+ I+G+ E + DP
Sbjct: 1 MGFRLHLKWGFSVQPPFSSNSSSWPSSHSFKGREALYDP-ARSLKPFITGDCEPSHSDPF 59
Query: 360 KAYACSSALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSLQARK 539
+ C S Q +D S ++K + G+GS ++++ G D L K
Sbjct: 60 RVQTCLSDPQLWTSDTSVTTEIKTRNGRGSPSNVYGDIGSHKIGISPDGEK-PTYLNTTK 118
Query: 540 APYFKXXXXXXXXXXXXFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXXFDLS 719
+ +F FADS LERDI+VQL ++GAL+ F TC +
Sbjct: 119 SLHFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSTFPKVL 178
Query: 720 DEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHALSLPSKTKRKR 899
D P +LI EV+ +D + + + +VV S KK+ RK RR R A+ I + +K ++
Sbjct: 179 DVPRELIKEVEKDDLVGNAIDKVVVRSRKKQERKSRRNRASRNANDIITVQPHTKNIQED 238
Query: 900 YGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISLSSWA 1079
+P KR +R++R +A NE EMS+GVK+VA LERIR LE++TG V + SSWA
Sbjct: 239 LQQPKFYSGKRTQASRNKRQKIAKNEAEMSRGVKLVAQLERIRSILEEETGRVATFSSWA 298
Query: 1080 KAAGVDKNVLQKQLRFGWYCRDELVRSTHPLIKYLARNYSGMGVAFEDLLQAGNMGVLQG 1259
+AAG+++ LQ++L FGWYCRDEL++ST L+ YLARNY G+GVAFEDL+QAGNMGVLQG
Sbjct: 299 EAAGIEQKELQQRLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQG 358
Query: 1260 AEKFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLYKSHG 1439
A +FDHTRGY+FSTY QYW+RKS+S LV +HARG+ IPFT+ + INQI KARK L +SHG
Sbjct: 359 AVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSRSHG 418
Query: 1440 KYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESPEEVV 1619
K+PAD++IAKFTGLS A+I ASKCLR+VGS+D+K+GD ++ K LE PD SI SPEE V
Sbjct: 419 KFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCISAKVLELTPDKSITSPEETV 478
Query: 1620 MHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIEKAAL 1799
M Q + ++Y LL+ LD +E+QV+ R+GL H+ KSLEEIGRL+ VSKEWIR+IE+ AL
Sbjct: 479 MRQDIVDNMYSLLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERRAL 538
Query: 1800 TKLRDEETRTKLSHY 1844
TKLR+ + ++HY
Sbjct: 539 TKLRNADYFQHITHY 553
>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
lycopersicum]
Length = 551
Score = 483 bits (1242), Expect = e-133
Identities = 264/555 (47%), Positives = 354/555 (63%)
Frame = +3
Query: 180 VGFRLHLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXXMSVSVPSVISGESEILYDDPL 359
+GFRLHLKWGF +Q + S+ I+G+ E + DP
Sbjct: 1 MGFRLHLKWGFSLQPPFSSNSSSWPSSHSFKGRETLYDP-ARSLKPFINGDCEPSHSDPF 59
Query: 360 KAYACSSALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSLQARK 539
+ C S Q +D S + K + G+GS ++++ G S + GE + L K
Sbjct: 60 RVQTCLSDPQLWTSDASVTTETKTRNGRGSPSNVYGDIG-SYKIDGEKPT----YLNTTK 114
Query: 540 APYFKXXXXXXXXXXXXFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXXFDLS 719
+ +F FADS LERDI+VQL ++GAL+ F TC +
Sbjct: 115 SLHFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSSFPKVL 174
Query: 720 DEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHALSLPSKTKRKR 899
D P +LI EV+ +D + + M +VV S KK+ R RR+R A+ I + +K ++
Sbjct: 175 DVPRELIKEVEKDDLVGNAMDKVVVRSRKKQERMSRRKRASRNANDIITVQPHTKNIQED 234
Query: 900 YGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISLSSWA 1079
+ KR +R++R +A NE EMSKGVK+VA LERIR LE++TG V + SSWA
Sbjct: 235 LQQLKFYSGKRTHASRTKRQKIAKNEAEMSKGVKLVAQLERIRSILEEETGQVATFSSWA 294
Query: 1080 KAAGVDKNVLQKQLRFGWYCRDELVRSTHPLIKYLARNYSGMGVAFEDLLQAGNMGVLQG 1259
KAAG+++ LQ+ L FGWYCRDEL++ST L+ YLARNY G+GVAFEDL+QAGNMGVLQG
Sbjct: 295 KAAGIEQKELQQHLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQG 354
Query: 1260 AEKFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLYKSHG 1439
A +FDHTRGY+FSTY QYW+RKS+S LV +HARG+ IPFT+ + INQI KARK L +SHG
Sbjct: 355 AVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSRSHG 414
Query: 1440 KYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESPEEVV 1619
K+PAD++IAKFTGLS A+I ASKCLR+VGS+D+K+GD +N K LE PD S+ SPEE V
Sbjct: 415 KFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCINAKVLELTPDKSVTSPEEFV 474
Query: 1620 MHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIEKAAL 1799
M Q + ++Y LL+ LD +E+QV+ R+GL H+ KSLEEIGRL+ VSKEWIR+IE+ AL
Sbjct: 475 MRQDIVDNMYALLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERRAL 534
Query: 1800 TKLRDEETRTKLSHY 1844
TKLR + ++HY
Sbjct: 535 TKLRSADYFQHITHY 549
>gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus guttatus]
Length = 478
Score = 473 bits (1218), Expect = e-130
Identities = 250/474 (52%), Positives = 331/474 (69%), Gaps = 1/474 (0%)
Frame = +3
Query: 435 VGKGSLNHLHNL-SGDSCFLFGEDDSAFLGSLQARKAPYFKXXXXXXXXXXXXFADSNAL 611
+GKGS + L++L D ED L S+QA +A + FADSNA+
Sbjct: 16 LGKGSSDSLYSLLDSDIQIPKNEDKLENLTSVQATQASKLRLLMKNLDVLEDMFADSNAV 75
Query: 612 SLERDIMVQLGRIGALKLFQTCXXXXXXXXXXFDLSDEPGDLIGEVQMEDNIDDHMSNIV 791
LE DI+ QL R+GAL+LF +C FDLSD P +++ E + +
Sbjct: 76 RLEGDILEQLERLGALRLFHSCLSRTIKSYTSFDLSDGPTEIVEECK-----------VF 124
Query: 792 VCSGKKEVRKFRRERTLEKADKIHALSLPSKTKRKRYGRPAVAPVKRPSNARSRRLILAI 971
V SGKKE+RK RR+RT + S PSKT K + A R +R++R A
Sbjct: 125 VHSGKKELRKLRRKRTSDNESPTIQES-PSKTISKDLQQLKFAIAGRTPRSRNKRQKTAR 183
Query: 972 NEVEMSKGVKVVANLERIRLTLEKDTGHVISLSSWAKAAGVDKNVLQKQLRFGWYCRDEL 1151
NE +MS GVK VA LE+IR LE++TG + SLS+WA+AAG+ K LQ+ L +GW+CRDEL
Sbjct: 184 NEADMSSGVKRVAELEKIRTKLEQETGQIASLSNWAEAAGIKKKELQQHLHYGWHCRDEL 243
Query: 1152 VRSTHPLIKYLARNYSGMGVAFEDLLQAGNMGVLQGAEKFDHTRGYRFSTYAQYWVRKSI 1331
+RSTH L+ ++ARNYSG+GVAFEDL+QAGN+GVLQGAE+FD +RGY+FSTY QYW+RKS+
Sbjct: 244 LRSTHSLVLFIARNYSGLGVAFEDLIQAGNIGVLQGAERFDQSRGYKFSTYVQYWIRKSM 303
Query: 1332 SMLVTRHARGIHIPFTLSRRINQIQKARKVLYKSHGKYPADEDIAKFTGLSLAKIQSASK 1511
S LV +HARG+ IP TLS+ INQ+ KARK L S+GKYP D +IAKFTGLS+AK+ SASK
Sbjct: 304 STLVAKHARGVRIPCTLSKVINQVHKARKALTTSNGKYPDDYEIAKFTGLSVAKVMSASK 363
Query: 1512 CLRIVGSLDEKMGDSLNVKFLEFMPDTSIESPEEVVMHQHMRKDIYKLLKGLDLREKQVL 1691
CLR+VGS+D+K+G+ + K++E + DTS+ SPEE V+ QHM D+ LL GL+ REKQV+
Sbjct: 364 CLRVVGSIDQKIGEYMTTKYMEILSDTSMPSPEEAVIRQHMLNDVSTLLNGLEPREKQVI 423
Query: 1692 LLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIEKAALTKLRDEETRTKLSHYLKL 1853
+LR+GLG+ +CKSLEEIGRLF VSKEWIRKIE++AL KLR+E++ L+HY+ +
Sbjct: 424 ILRFGLGNCQCKSLEEIGRLFRVSKEWIRKIERSALIKLRNEDSLKILNHYVHM 477
>emb|CAD20832.1| sigma factor [Spinacia oleracea]
Length = 548
Score = 472 bits (1214), Expect = e-130
Identities = 253/509 (49%), Positives = 346/509 (67%), Gaps = 1/509 (0%)
Frame = +3
Query: 330 ESEILYDDPLKAYACSSALQ-TLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDD 506
ESE L D L+ +A SS++ T+END S +E + K S +L D+ L D
Sbjct: 54 ESETLRKDTLRPHAGSSSVPLTVENDYSNLETT---ISKRSCK---DLISDTEVLSDRDV 107
Query: 507 SAFLGSLQARKAPYFKXXXXXXXXXXXXFADSNALSLERDIMVQLGRIGALKLFQTCXXX 686
S ++ S+Q+ A +F +DS L LE+DI+VQLGR+GAL+LF C
Sbjct: 108 SVYVRSVQSCSASHFHTLMANINLLENKVSDSELLKLEKDILVQLGRLGALQLFHACLSR 167
Query: 687 XXXXXXXFDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHA 866
D+SD PG + + + D+ + +V S +KE RK R+ER L+ A
Sbjct: 168 I------IDMSDLPGLITEDGKANVRKDNELKKKLVFSKRKEERKLRQERRLQ-ASTSKR 220
Query: 867 LSLPSKTKRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKD 1046
+ S++ + V+ + + AR RR I+A NE EMS+G+KVVA LE+++LTLEK+
Sbjct: 221 CACKSESSIESSIHHVVSTAAKKTKARGRRAIIAKNEAEMSRGIKVVAQLEKVKLTLEKE 280
Query: 1047 TGHVISLSSWAKAAGVDKNVLQKQLRFGWYCRDELVRSTHPLIKYLARNYSGMGVAFEDL 1226
TG +SL+ WA+AAG+D+ VLQ L FGWYCRDEL++S L+ YL+R Y G+GVA EDL
Sbjct: 281 TGKAVSLNCWAEAAGIDEKVLQHDLHFGWYCRDELLKSGRSLVLYLSRYYRGLGVAHEDL 340
Query: 1227 LQAGNMGVLQGAEKFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQ 1406
+QAGN+G+LQGAE+FDHTRGY+FSTY QYW+RK++S LV+RH RGI +P TLS IN++Q
Sbjct: 341 MQAGNIGILQGAERFDHTRGYQFSTYVQYWIRKAMSQLVSRHGRGIKVPTTLSTTINRVQ 400
Query: 1407 KARKVLYKSHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMP 1586
KARK+L +S GK+P D +++K TGLSL KI+SA CLRIVGSLD+K+G +N+K+LE P
Sbjct: 401 KARKILKRSQGKHPDDVEVSKSTGLSLDKIKSADNCLRIVGSLDQKVGHFINMKYLECTP 460
Query: 1587 DTSIESPEEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSK 1766
DT++E PE+ VM QHMR D++KLL+ LD +E++VL+ RYGL H C SL E+G++F VSK
Sbjct: 461 DTALEMPEKTVMKQHMRNDVHKLLQELDPKERRVLIHRYGLEGH-CMSLHEVGKVFDVSK 519
Query: 1767 EWIRKIEKAALTKLRDEETRTKLSHYLKL 1853
EWIRK+EK ALTKLR E+ +T L HYL L
Sbjct: 520 EWIRKMEKRALTKLRTEQNQTNLKHYLNL 548
>ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Glycine max]
Length = 551
Score = 463 bits (1192), Expect = e-127
Identities = 257/518 (49%), Positives = 350/518 (67%), Gaps = 1/518 (0%)
Frame = +3
Query: 303 VSVPSVISGESEILYDDPLKAYA-CSSALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGD 479
+S PS E E L D + +A SSAL+TLEND+ E+ + GK SL+ +H + +
Sbjct: 49 LSFPSTFYEEGEALQKDFGRVFAFSSSALETLENDSLGREETQVNKGKRSLSSVHKMIDN 108
Query: 480 SCFLFGEDDSAFLGSLQARKAPYFKXXXXXXXXXXXXFADSNALSLERDIMVQLGRIGAL 659
+ FGE S ++ +A +F+ F DS AL LE+ I++QLG++GAL
Sbjct: 109 TQMPFGEV-STVSKKFESFRAQHFRLLMENLCVLEETFVDSEALRLEKAIILQLGKLGAL 167
Query: 660 KLFQTCXXXXXXXXXXFDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERT 839
+LF C LS G + D +DD+ +VV S KK+ K RR+R
Sbjct: 168 ELFNVC------------LSRSLGTSLVS-NYADKVDDYKDKVVVQSSKKKENKTRRKRE 214
Query: 840 LEKADKIHALSLPSKTKRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLE 1019
+ + SL K ++ + + VKR N +++R+++A E EMSKGVKV+A LE
Sbjct: 215 FVST-AVSSQSLTLKANQEDLLGFSASLVKRAPNTKNKRILVAKREAEMSKGVKVLAELE 273
Query: 1020 RIRLTLEKDTGHVISLSSWAKAAGVDKNVLQKQLRFGWYCRDELVRSTHPLIKYLARNYS 1199
+IR +E+DT V SLS+WA+A+GVD+ VLQK L G+YC+DEL+RST L+ YLAR Y
Sbjct: 274 KIRTAIEEDTKRVASLSTWAEASGVDEKVLQKLLHRGYYCQDELIRSTRSLVLYLARKYR 333
Query: 1200 GMGVAFEDLLQAGNMGVLQGAEKFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFT 1379
GMG+A +DLLQAG +GVLQGAE+FD TRGY+FSTY QYW+RKSI +V R+ARGI IP++
Sbjct: 334 GMGIALDDLLQAGYVGVLQGAERFDSTRGYKFSTYVQYWIRKSILRVVARYARGIVIPWS 393
Query: 1380 LSRRINQIQKARKVLYKSHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSL 1559
L+R INQIQKARK + +H K P D +IAK TGLSL KI+SAS CLRIV S+D+K+GD L
Sbjct: 394 LNRAINQIQKARKAMKSTHKKCPDDYEIAKMTGLSLDKIKSASNCLRIVASIDQKVGDYL 453
Query: 1560 NVKFLEFMPDTSIESPEEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEE 1739
V+++E +PD +IESPE+ VM QHMRKD++ LLKGL+LRE+++L LR+GL D++ +SL++
Sbjct: 454 GVEYMELLPDATIESPEDAVMKQHMRKDVHDLLKGLNLRERKILTLRFGLNDNQPRSLQD 513
Query: 1740 IGRLFHVSKEWIRKIEKAALTKLRDEETRTKLSHYLKL 1853
IG LF VSKE IRKIEK ALTKL++E T +KL +YL L
Sbjct: 514 IGTLFKVSKERIRKIEKKALTKLKNEATISKLHYYLDL 551
>ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
gi|449507267|ref|XP_004162982.1| PREDICTED: RNA
polymerase sigma factor sigC-like [Cucumis sativus]
Length = 559
Score = 458 bits (1179), Expect = e-126
Identities = 259/559 (46%), Positives = 351/559 (62%), Gaps = 1/559 (0%)
Frame = +3
Query: 174 MGVGFRLHLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXXMSVSVPSVISGESEILYDD 353
MG FR +L+WGF +Q +S S I E E + +
Sbjct: 1 MGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRE 60
Query: 354 PLKAYAC-SSALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSLQ 530
LK Y C S A QT ND +E+++ G SL +H + ED+ + SL
Sbjct: 61 TLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSLP 120
Query: 531 ARKAPYFKXXXXXXXXXXXXFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXXF 710
KA F F +S LSLERDI++QL ++GAL+ F TC
Sbjct: 121 TGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFH 180
Query: 711 DLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHALSLPSKTK 890
D S P + + + +D N+ V S KK R+ ++R ++ ADKI + L ++
Sbjct: 181 DSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAV 240
Query: 891 RKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISLS 1070
+++ R V K+ SN+ RRLI+AINE EMS GVKVVANLERIR TLEK++G + S+S
Sbjct: 241 KEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMS 300
Query: 1071 SWAKAAGVDKNVLQKQLRFGWYCRDELVRSTHPLIKYLARNYSGMGVAFEDLLQAGNMGV 1250
WA+AA VD LQKQL+FG +CRDEL+RST+ L+ +LA+ Y G+ EDL+QAG +GV
Sbjct: 301 CWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGV 360
Query: 1251 LQGAEKFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLYK 1430
LQG E+FD RG+R STY QYW+RKS+S +V R++RGI IP +L++ INQIQKARKVL
Sbjct: 361 LQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNH 420
Query: 1431 SHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESPE 1610
S +Y +D+DIA+ TGL LAK++ AS CL++VGS D+KMGD +N+K++EF D SI+SPE
Sbjct: 421 SGRRY-SDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPE 479
Query: 1611 EVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIEK 1790
E V + M+KDI+ +L+ L+ RE+QVL+LRYGL D KSLEEIG+L H+SKEW+RKIEK
Sbjct: 480 ETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEK 539
Query: 1791 AALTKLRDEETRTKLSHYL 1847
A+TKL++EET LSHYL
Sbjct: 540 KAMTKLKNEETVKHLSHYL 558
>ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cicer arietinum]
Length = 545
Score = 452 bits (1162), Expect = e-124
Identities = 247/518 (47%), Positives = 344/518 (66%), Gaps = 1/518 (0%)
Frame = +3
Query: 303 VSVPSVISGESEILYDDPLKAYA-CSSALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGD 479
+S+ S + E E L D K +A SSAL+ E D + E K GK SL+ +H + +
Sbjct: 44 LSLLSTVYEEGETLQKDFGKTFAFSSSALEVPEMDLLQGEVTKVNKGKRSLSSVHEIIDN 103
Query: 480 SCFLFGEDDSAFLGSLQARKAPYFKXXXXXXXXXXXXFADSNALSLERDIMVQLGRIGAL 659
+ FGE P+F FADS A+ LE+DI+++L ++GAL
Sbjct: 104 TQLPFGE--------------PHFGLLMENLGILEETFADSEAMRLEKDIVLKLEKLGAL 149
Query: 660 KLFQTCXXXXXXXXXXFDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERT 839
+LF C + +D + + E + +D++ +VV S +KE R R++ +
Sbjct: 150 ELFNVCLTRSFGTSTESNCTDVVLEHVKEKKRNFKVDNYTGKVVVQSKRKENRTRRKQAS 209
Query: 840 LEKADKIHALSLPSKTKRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLE 1019
+ +L L + PA + VKR SN +RR ++A EVEMSKGVKV+A LE
Sbjct: 210 VAITTSFQSLPLEDNNQEGPLRLPA-SLVKRVSNTNNRRAVIAQREVEMSKGVKVLAELE 268
Query: 1020 RIRLTLEKDTGHVISLSSWAKAAGVDKNVLQKQLRFGWYCRDELVRSTHPLIKYLARNYS 1199
+++ +E+DT +SLSSWA+A+GVD+NVLQ+QL G+YCRDEL+RST L+ Y AR Y
Sbjct: 269 KMKTAIEEDTKQAVSLSSWAEASGVDENVLQRQLYHGYYCRDELIRSTRSLVLYFARKYR 328
Query: 1200 GMGVAFEDLLQAGNMGVLQGAEKFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFT 1379
GMG+A EDLLQ G +GVLQGAE+FD TRGYRFSTY QYW+RKS+S +V R+ARGI IP++
Sbjct: 329 GMGIALEDLLQVGYIGVLQGAERFDSTRGYRFSTYVQYWIRKSMSRMVARYARGITIPWS 388
Query: 1380 LSRRINQIQKARKVLYKSHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSL 1559
+++ I+QIQKARK+L + KYP D +IAK TGLSL +I+SAS C+RIV S+++KMGD
Sbjct: 389 MNKAISQIQKARKLLKSTSMKYPDDHEIAKMTGLSLDRIRSASHCMRIVSSMNQKMGDR- 447
Query: 1560 NVKFLEFMPDTSIESPEEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEE 1739
++++ +M D SIESPEE VM QH+RKDI+ +L+ LD RE+Q+L+LR+GL DH+ KSLE
Sbjct: 448 GIEYMGYMADMSIESPEETVMKQHIRKDIHDILQSLDSRERQILILRFGLNDHQPKSLEY 507
Query: 1740 IGRLFHVSKEWIRKIEKAALTKLRDEETRTKLSHYLKL 1853
IG+++ VSKEWIRKIEK ALTKLR+E +KL++YL L
Sbjct: 508 IGKIYKVSKEWIRKIEKKALTKLRNEANTSKLNYYLDL 545
>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323785|gb|EFH54206.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 568
Score = 437 bits (1123), Expect = e-119
Identities = 246/513 (47%), Positives = 331/513 (64%), Gaps = 2/513 (0%)
Frame = +3
Query: 315 SVISGESEILYDDPLKAYACSSALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLF 494
S + ES I DPLKA A SSA T EN +++D K +G GS
Sbjct: 89 SSVKEESRIYQKDPLKACA-SSAPYTAENVFLELKDPKENIGVGSAEK------------ 135
Query: 495 GEDDSAFLGSLQARKAPYFKXXXXXXXXXXXXFADSNALSLERDIMVQLGRIGALKLFQT 674
S +R + F ++ +ERDIM+Q+G++GA LF+T
Sbjct: 136 ---------SCSSRSMLQYNLLAKNLLALEETFVALDSARMERDIMLQMGKLGAADLFKT 186
Query: 675 CXXXXXXXXXXFDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRER-TLEKA 851
C LSD +L+G + + V S +K +K RR T E
Sbjct: 187 CLSRSRGSSVASCLSDTT-ELVGTTPNQQ--------VFVSSRRKLKKKARRSTVTAENG 237
Query: 852 DKIHALSLPSKTKRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRL 1031
D+ SLP R + V V+RP R +R ++ NE EMS GVK+VA++ERIR
Sbjct: 238 DQG---SLPMGL-RTTWNNIDVPRVRRPPKYRKKRERISKNEAEMSTGVKIVADMERIRT 293
Query: 1032 TLEKDTGHVISLSSWAKAAGVDKNVLQKQLRFGWYCRDELVRSTHPLIKYLARNYSGMGV 1211
LE+++G V SLS WA+AAG+++ +L + L +GWYCRDEL++ST L+ +LARNY G+G+
Sbjct: 294 QLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCRDELLKSTRSLVLFLARNYRGLGI 353
Query: 1212 AFEDLLQAGNMGVLQGAEKFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRR 1391
A EDL+QAG +GVLQGAE+FDHTRGY+FSTY QYW+RKS+SM+V+RHARG+HIP ++ R
Sbjct: 354 AHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSMMVSRHARGVHIPSSIIRT 413
Query: 1392 INQIQKARKVLYKSHG-KYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVK 1568
INQIQKARK L SHG KYPADEDI+K T LS+ KI++A++CL++VGS+++K+GD + K
Sbjct: 414 INQIQKARKTLKTSHGIKYPADEDISKLTSLSVKKIRAANQCLKVVGSIEKKVGDCFSTK 473
Query: 1569 FLEFMPDTSIESPEEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGR 1748
FLEF PDT++ESPEE VM Q R+DI+ LL+GL+ REKQV++LRYGL ++R KSLEEIG+
Sbjct: 474 FLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQNYRPKSLEEIGK 533
Query: 1749 LFHVSKEWIRKIEKAALTKLRDEETRTKLSHYL 1847
L VSKEWIRKIE+ A+ KLRD+ L +YL
Sbjct: 534 LLRVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 566
>ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Capsella rubella]
gi|482559522|gb|EOA23713.1| hypothetical protein
CARUB_v10016920mg [Capsella rubella]
Length = 581
Score = 434 bits (1115), Expect = e-119
Identities = 237/506 (46%), Positives = 331/506 (65%), Gaps = 3/506 (0%)
Frame = +3
Query: 345 YDDPLKAYACSSALQ--TLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFL 518
++DP KA AC+SA T N +++D K +G G + GE S+
Sbjct: 102 HNDPFKACACASATPYTTPNNVYVELKDPKENIGVGFV--------------GEQMSSAE 147
Query: 519 GSLQARKAPYFKXXXXXXXXXXXXFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXX 698
S +R + F+ ++L +ERDIM Q+G++GA + F+TC
Sbjct: 148 KSYSSRSMLQYNLLAKNLIALEETFSALDSLGMERDIMFQMGKLGATEFFKTCLSRSRGS 207
Query: 699 XXXFDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHALSLP 878
LS E DL+G + V S +++++K + R+ + SLP
Sbjct: 208 SITSCLS-ETTDLVGTTPKQQ---------VFVSSRRKLKK-KASRSSVTGENGDQGSLP 256
Query: 879 SKTKRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHV 1058
+ R + V V+RP R +R ++ NE EMS GVK+VA++ERIR LE+++G V
Sbjct: 257 IEL-RTTWNNIDVPRVRRPPKYRKKRERISRNEAEMSTGVKIVADMERIRTQLEEESGKV 315
Query: 1059 ISLSSWAKAAGVDKNVLQKQLRFGWYCRDELVRSTHPLIKYLARNYSGMGVAFEDLLQAG 1238
SLS WA+AAG+++ +L + L +GWYCRDEL++ST L+ +LARNY G+G+A EDL+QAG
Sbjct: 316 ASLSCWAEAAGMNEKLLMRNLHYGWYCRDELLKSTRSLVLFLARNYRGLGIAHEDLIQAG 375
Query: 1239 NMGVLQGAEKFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARK 1418
+GVLQGAE+FDH RGY+FSTY QYW+RKS+SM+V+RHARG+HIP ++ R INQIQKARK
Sbjct: 376 FVGVLQGAERFDHARGYKFSTYVQYWIRKSMSMMVSRHARGVHIPSSIIRTINQIQKARK 435
Query: 1419 VLYKSHG-KYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTS 1595
L SHG KYPADE+I+K T LS+ KI++A++CL++VGS++ K+GD + KFLEF PDT
Sbjct: 436 TLKTSHGIKYPADEEISKLTSLSVKKIRAANQCLKVVGSIENKVGDCFSTKFLEFTPDTM 495
Query: 1596 IESPEEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWI 1775
+ESPEE VM Q R+D++ LL+GL+ REKQV++LRYGL D+R KSLEEIG+L VSKEWI
Sbjct: 496 MESPEEAVMRQSARRDLHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLRVSKEWI 555
Query: 1776 RKIEKAALTKLRDEETRTKLSHYLKL 1853
R+IE+ A+ KLRD+ L +YLKL
Sbjct: 556 RRIERRAMAKLRDQPNAEDLRYYLKL 581
>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 571
Score = 431 bits (1108), Expect = e-118
Identities = 241/514 (46%), Positives = 325/514 (63%), Gaps = 3/514 (0%)
Frame = +3
Query: 315 SVISGESEILYDDPLKAYACSSALQTLENDNSKME--DMKFKVGKGSLNHLHNLSGDSCF 488
S + ES I +D LKA C+S +N +E D K +G GS
Sbjct: 89 SSVKEESRIYQNDSLKACGCASVSPYTAQNNVYVELKDPKENIGVGSAER---------- 138
Query: 489 LFGEDDSAFLGSLQARKAPYFKXXXXXXXXXXXXFADSNALSLERDIMVQLGRIGALKLF 668
S +R + F +++ +ERDIM+Q+G++GA +LF
Sbjct: 139 -----------SYSSRSMLQYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELF 187
Query: 669 QTCXXXXXXXXXXFDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEK 848
+TC LSD + +D + V S +++V+K R R+
Sbjct: 188 KTCLSRYRGSSITSCLSDTT----------ELVDTTPNQQVFVSSRRKVKKKAR-RSSVT 236
Query: 849 ADKIHALSLPSKTKRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIR 1028
A+ SLP R + V V+RP R +R ++ NE EMS GVK+VA++ERIR
Sbjct: 237 AENGDQSSLPIGL-RTTWNNIDVPRVRRPPKYRKKRERISRNETEMSTGVKIVADMERIR 295
Query: 1029 LTLEKDTGHVISLSSWAKAAGVDKNVLQKQLRFGWYCRDELVRSTHPLIKYLARNYSGMG 1208
LE+++G V SLS WA AAG+++ +L + L +GWYCRDELV+ST L+ +LARNY GMG
Sbjct: 296 TQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGMG 355
Query: 1209 VAFEDLLQAGNMGVLQGAEKFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSR 1388
+A EDL+QAG +GVLQGAE+FDHTRGY+FSTY QYW+RKS+S +V+RHARG+HIP ++ R
Sbjct: 356 IAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIR 415
Query: 1389 RINQIQKARKVLYKSHG-KYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNV 1565
IN IQKARK L SHG KY ADE+IAK TG S+ KI++A++CL++VGS+D+K+GD
Sbjct: 416 TINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTT 475
Query: 1566 KFLEFMPDTSIESPEEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIG 1745
KFLEF PDT++ESPEE VM Q R+DI+ LL+GL+ REKQV++LRYGL D+R KSLEEIG
Sbjct: 476 KFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIG 535
Query: 1746 RLFHVSKEWIRKIEKAALTKLRDEETRTKLSHYL 1847
+LF VSKEWIRKIE+ A+ KLRD+ L +YL
Sbjct: 536 KLFKVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569
>ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana]
gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA
polymerase sigma factor sigC; Short=Sigma factor C;
Short=Sigma-C; AltName: Full=RNA polymerase sigma factor
sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
Precursor gi|2353175|gb|AAB69386.1| sigma factor 3
[Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC
[Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma
factor SigC [Arabidopsis thaliana]
gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis
thaliana] gi|133778870|gb|ABO38775.1| At3g53920
[Arabidopsis thaliana] gi|332645638|gb|AEE79159.1|
RNApolymerase sigma-subunit C [Arabidopsis thaliana]
Length = 571
Score = 427 bits (1099), Expect = e-117
Identities = 239/514 (46%), Positives = 324/514 (63%), Gaps = 3/514 (0%)
Frame = +3
Query: 315 SVISGESEILYDDPLKAYACSSALQTLENDNSKME--DMKFKVGKGSLNHLHNLSGDSCF 488
S + ES I +D LKA C+S +N +E D K +G GS
Sbjct: 89 SSVKEESRIYQNDSLKACGCASVSPYTAQNNVYVELKDPKENIGVGSAER---------- 138
Query: 489 LFGEDDSAFLGSLQARKAPYFKXXXXXXXXXXXXFADSNALSLERDIMVQLGRIGALKLF 668
S +R + F +++ +ERDIM+Q+G++GA +LF
Sbjct: 139 -----------SYSSRSMLQYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELF 187
Query: 669 QTCXXXXXXXXXXFDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEK 848
+TC LSD + +D + V S +++V+K R R+
Sbjct: 188 KTCLSRYRGSSITSCLSDTT----------ELVDTTPNQQVFVSSRRKVKKKAR-RSSVT 236
Query: 849 ADKIHALSLPSKTKRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIR 1028
A+ SLP R + V V+RP R +R ++ NE EMS GVK+VA++ERIR
Sbjct: 237 AENGDQSSLPIGL-RTTWNNIDVPRVRRPPKYRKKRERISRNETEMSTGVKIVADMERIR 295
Query: 1029 LTLEKDTGHVISLSSWAKAAGVDKNVLQKQLRFGWYCRDELVRSTHPLIKYLARNYSGMG 1208
LE+++G V SLS WA AAG+++ +L + L +GWYCRDELV+ST L+ +LARNY G+G
Sbjct: 296 TQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLG 355
Query: 1209 VAFEDLLQAGNMGVLQGAEKFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSR 1388
+A EDL+QAG +GVLQGAE+FDHTRGY+FSTY QYW+RKS+S +V+RHARG+HIP ++ R
Sbjct: 356 IAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIR 415
Query: 1389 RINQIQKARKVLYKSHG-KYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNV 1565
IN IQKARK L SHG KY ADE+IAK TG S+ KI++A++CL++VGS+D+K+GD
Sbjct: 416 TINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTT 475
Query: 1566 KFLEFMPDTSIESPEEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIG 1745
KFLEF PDT++ESPEE VM Q R+DI+ LL+GL+ REKQV++LRYGL D+R KSLEEIG
Sbjct: 476 KFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIG 535
Query: 1746 RLFHVSKEWIRKIEKAALTKLRDEETRTKLSHYL 1847
+L VSKEWIRKIE+ A+ KLRD+ L +YL
Sbjct: 536 KLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569