BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia24_contig00010422
         (1914 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   690   0.0  
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun...   674   0.0  
ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theob...   634   e-179
ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theob...   634   e-179
gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus...   633   e-179
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   627   e-177
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras...   627   e-177
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]   626   e-176
ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   625   e-176
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...   624   e-176
ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m...   624   e-176
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   623   e-176
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]         622   e-175
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer...   622   e-175
ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu...   619   e-174
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun...   615   e-173
ref|XP_006484275.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   601   e-169
ref|XP_006437832.1| hypothetical protein CICLE_v10030633mg [Citr...   601   e-169
ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citr...   600   e-169
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr...   600   e-169

>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score =  690 bits (1781), Expect = 0.0
 Identities = 361/550 (65%), Positives = 411/550 (74%), Gaps = 3/550 (0%)
 Frame = -2

Query: 1643 MWRSIAKQAYSKKWKFXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPGF 1464
            MWR++AK AY+++ +             + +      F  + R +    +VN   P+ G 
Sbjct: 1    MWRNLAKHAYTRRLQLSSQHSSFSPSNCTSRF----YFPDKARALESQDHVNSLRPVAGL 56

Query: 1463 NRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDGSGVDEIH 1284
             RIG LS Q+D  GR    V+  P N  G   Y KGY                SGVDE+ 
Sbjct: 57   RRIGVLSFQQDELGRPGFGVTKTPVNFFGLFGYQKGYASAAEAIASEEDM---SGVDEVQ 113

Query: 1283 ELVAEVNKEDKMKSNFKQHRKLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQELLVDM 1104
            ELV EVNK DK++    +  KL+ G+ QGK+N+LRRRQ+KMETEAWEEAAKEY+ELL DM
Sbjct: 114  ELVEEVNKGDKLE----KQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDM 169

Query: 1103 CEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMMAVITX 924
            CEQKLAPNLPY+KSLFLGW+EPLRD IA EQ+LCKQGKNR AYAPYF  LPADMMAVIT 
Sbjct: 170  CEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITM 229

Query: 923  XXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKD-PKSESDPVI 747
                         GSARVVQAA  IGEA+EHEVRI  F+EKTKKKS + + P   S+PV 
Sbjct: 230  HKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVT 289

Query: 746  KEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQLLMETAYIQPP 567
            KE+ KLRKKV+ L+KKQKLQQVR+IVK +DDSKPWGQD  VKVG RLI+LL+ETAYIQPP
Sbjct: 290  KEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPP 349

Query: 566  VDQLGDGPPDIRPAFVHTLKTVVKETH--SRRYGVIECDPLVRKGLEKSARHMVIPYMPM 393
             DQLGDGPPDIRPAFVHTLKTV+KET   +RRYGVIECDPLVRKGLEK+ARHMVIPYMPM
Sbjct: 350  ADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPM 409

Query: 392  LVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEALDTLGNAKWRI 213
            LVPPLNW GYD+GAYLFLPSYVMR HGA+QQREA+KR  RK LEP FEAL+TLGN KWRI
Sbjct: 410  LVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRI 469

Query: 212  NKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTDDEAEIRXXXXXXXXXXKENSERHS 33
            NKRVL +IDRIW+SGG+LADLVDREDVPLPEEPDT+DEAEIR          KENSERHS
Sbjct: 470  NKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHS 529

Query: 32   QRCDIELKLA 3
            QRCDIELKLA
Sbjct: 530  QRCDIELKLA 539


>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
            gi|462422319|gb|EMJ26582.1| hypothetical protein
            PRUPE_ppa000780mg [Prunus persica]
          Length = 1006

 Score =  674 bits (1740), Expect = 0.0
 Identities = 349/567 (61%), Positives = 417/567 (73%), Gaps = 20/567 (3%)
 Frame = -2

Query: 1643 MWRSIAKQAYSKKWKFXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPGF 1464
            MWR++AKQ  S+K               S+  SQ+S F  + R       +N R  + GF
Sbjct: 1    MWRNLAKQVASRKTNLSSQSHFGSPSSTSMIFSQESSFLDKARHFEARKCINNRILVMGF 60

Query: 1463 NRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDGSGVDEIH 1284
             ++G ++SQ++  GR S    + P+ ISGF +Y+KGY              D SG +EI 
Sbjct: 61   RQVGDMASQKEELGRCSSLNPSYPYGISGFCNYAKGYASVAEAIASTDGEEDSSGSEEIQ 120

Query: 1283 ELVAEVNKEDKM-KSNFKQHRKLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQELLVD 1107
            E++ ++ +E+ M +S+FKQ +++V GMG GKYN+LR+RQ+K+ETEAW+EAAKEYQELL D
Sbjct: 121  EMLEDLIRENNMVESHFKQPKRVVVGMGVGKYNLLRKRQIKLETEAWQEAAKEYQELLAD 180

Query: 1106 MCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMMAVIT 927
            MCEQKLAPNLPY+KSLFLGW+EPLRDAIA +Q+ CKQ  +R ++APYF  LPAD MAVIT
Sbjct: 181  MCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQPNSRQSHAPYFDHLPADKMAVIT 240

Query: 926  XXXXXXXXXXXXXXG-SARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKDPKSESDPV 750
                            S RVVQAA  IGEA+EHEVRIH FLEKTKKK    D K+E+D V
Sbjct: 241  MHKLMGLLMTNNGGIGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTIDKKAEADSV 300

Query: 749  ----------------IKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKV 618
                             KE+ +LRKKV  LIK+QK+QQVR IVK ++D KPWGQ+  VKV
Sbjct: 301  PVTIEQEKLADEQEKLTKEQERLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQEAHVKV 360

Query: 617  GCRLIQLLMETAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETH--SRRYGVIECDPLVR 444
            GCRLIQLLM+TAYIQPPVDQ+GDGPPDIRPAFVH LKT+ ++T   SRRYGVIECDP+VR
Sbjct: 361  GCRLIQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYGVIECDPIVR 420

Query: 443  KGLEKSARHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQL 264
            KG+EK+ARHMV+PYMPMLVPP+NW GYDRGAYLFLPSYVMRTHGAKQQRE VKRT RKQL
Sbjct: 421  KGMEKTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREVVKRTPRKQL 480

Query: 263  EPVFEALDTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTDDEAEIRX 84
            EPVFEALDTLG+ KWR+NKRVL +IDRIW+SGG+LADLVDREDVPLPEEPDT+DEAEIR 
Sbjct: 481  EPVFEALDTLGSTKWRVNKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRK 540

Query: 83   XXXXXXXXXKENSERHSQRCDIELKLA 3
                     KENSERHSQRCDIELKLA
Sbjct: 541  WKWKLKAAKKENSERHSQRCDIELKLA 567


>ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
            gi|508709658|gb|EOY01555.1| DNA-directed RNA polymerase
            isoform 3 [Theobroma cacao]
          Length = 932

 Score =  634 bits (1635), Expect = e-179
 Identities = 340/560 (60%), Positives = 402/560 (71%), Gaps = 13/560 (2%)
 Frame = -2

Query: 1643 MWRSIAKQA-YSKKWKFXXXXXXXXXXXXSIK-ISQDSVFSQRIRPVGYSTYVNYRYPLP 1470
            MWRS+ KQA Y +K+KF            S    SQDSVF+ ++R         Y    P
Sbjct: 1    MWRSLVKQAAYREKFKFVAEPYTCSLSSCSATGFSQDSVFANKVRASEARANGFYGCLFP 60

Query: 1469 GFNRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDGSGVDE 1290
            GF +IG  SSQ+D+ G+FSL    +P   SG     KGY               GS  +E
Sbjct: 61   GFRQIGVFSSQKDDLGKFSLNQPGDPLRFSGKFWNLKGYASAAEAVISTEEDMSGS--EE 118

Query: 1289 IHELVAEVNKEDKMKSNFKQHRKLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQELLV 1110
            IHEL+  + +E+K  S   Q +K+ +GMG  KYN L++RQ+K+ETEAWEEAAKEYQELL+
Sbjct: 119  IHELMEAMAREEKKMSFLVQPKKVAEGMGVAKYNTLKKRQIKIETEAWEEAAKEYQELLM 178

Query: 1109 DMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMMAVI 930
            DMCE KLAPNLPY+KSLFLGW+EPLRD+I  EQELCK+   R+++A YF  L ADMMAV+
Sbjct: 179  DMCEHKLAPNLPYIKSLFLGWFEPLRDSIVGEQELCKENC-RISHAAYFNELSADMMAVV 237

Query: 929  TXXXXXXXXXXXXXXGSA-RVVQAASQIGEALEHEVRIHSFLEKTKKKSIA-KDPKSESD 756
            T                  RVVQAA QIGEA+EHE +I SFL KTKKK    K P  ES+
Sbjct: 238  TMHKLMGLLMTNTAGTGGIRVVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKKPDGESE 297

Query: 755  PV-------IKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQL 597
            PV       +K++ KLRKKVT L+KKQK+ QVR+IVKG D SK WGQ+  VKVGCRLIQL
Sbjct: 298  PVTNKQEKLVKDQEKLRKKVTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLIQL 357

Query: 596  LMETAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETH--SRRYGVIECDPLVRKGLEKSA 423
            L+E AYIQPPVDQLGD PPDIRPAFVH+LKT+ K+ +  SRRYGVIECD LVRKGLEK+A
Sbjct: 358  LIENAYIQPPVDQLGDCPPDIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEKTA 417

Query: 422  RHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEAL 243
            RHMVIPYMPMLVPP NW GYDRGAYLFLPSYVMRTHGAKQQRE VKRT RKQLEP+FEAL
Sbjct: 418  RHMVIPYMPMLVPPQNWTGYDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPIFEAL 477

Query: 242  DTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTDDEAEIRXXXXXXXX 63
            DTLGN KWRINKRVL ++DR+W++GG++A LVDREDVPLPE+PDT+DEAEI+        
Sbjct: 478  DTLGNTKWRINKRVLGVVDRLWANGGRVASLVDREDVPLPEKPDTEDEAEIQKWKWKVKA 537

Query: 62   XXKENSERHSQRCDIELKLA 3
              K+N+ERHS RCD+ELKLA
Sbjct: 538  ANKQNNERHSLRCDVELKLA 557


>ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|590698457|ref|XP_007045722.1| DNA-directed RNA
            polymerase isoform 1 [Theobroma cacao]
            gi|508709656|gb|EOY01553.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao] gi|508709657|gb|EOY01554.1|
            DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 996

 Score =  634 bits (1635), Expect = e-179
 Identities = 340/560 (60%), Positives = 402/560 (71%), Gaps = 13/560 (2%)
 Frame = -2

Query: 1643 MWRSIAKQA-YSKKWKFXXXXXXXXXXXXSIK-ISQDSVFSQRIRPVGYSTYVNYRYPLP 1470
            MWRS+ KQA Y +K+KF            S    SQDSVF+ ++R         Y    P
Sbjct: 1    MWRSLVKQAAYREKFKFVAEPYTCSLSSCSATGFSQDSVFANKVRASEARANGFYGCLFP 60

Query: 1469 GFNRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDGSGVDE 1290
            GF +IG  SSQ+D+ G+FSL    +P   SG     KGY               GS  +E
Sbjct: 61   GFRQIGVFSSQKDDLGKFSLNQPGDPLRFSGKFWNLKGYASAAEAVISTEEDMSGS--EE 118

Query: 1289 IHELVAEVNKEDKMKSNFKQHRKLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQELLV 1110
            IHEL+  + +E+K  S   Q +K+ +GMG  KYN L++RQ+K+ETEAWEEAAKEYQELL+
Sbjct: 119  IHELMEAMAREEKKMSFLVQPKKVAEGMGVAKYNTLKKRQIKIETEAWEEAAKEYQELLM 178

Query: 1109 DMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMMAVI 930
            DMCE KLAPNLPY+KSLFLGW+EPLRD+I  EQELCK+   R+++A YF  L ADMMAV+
Sbjct: 179  DMCEHKLAPNLPYIKSLFLGWFEPLRDSIVGEQELCKENC-RISHAAYFNELSADMMAVV 237

Query: 929  TXXXXXXXXXXXXXXGSA-RVVQAASQIGEALEHEVRIHSFLEKTKKKSIA-KDPKSESD 756
            T                  RVVQAA QIGEA+EHE +I SFL KTKKK    K P  ES+
Sbjct: 238  TMHKLMGLLMTNTAGTGGIRVVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKKPDGESE 297

Query: 755  PV-------IKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQL 597
            PV       +K++ KLRKKVT L+KKQK+ QVR+IVKG D SK WGQ+  VKVGCRLIQL
Sbjct: 298  PVTNKQEKLVKDQEKLRKKVTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLIQL 357

Query: 596  LMETAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETH--SRRYGVIECDPLVRKGLEKSA 423
            L+E AYIQPPVDQLGD PPDIRPAFVH+LKT+ K+ +  SRRYGVIECD LVRKGLEK+A
Sbjct: 358  LIENAYIQPPVDQLGDCPPDIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEKTA 417

Query: 422  RHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEAL 243
            RHMVIPYMPMLVPP NW GYDRGAYLFLPSYVMRTHGAKQQRE VKRT RKQLEP+FEAL
Sbjct: 418  RHMVIPYMPMLVPPQNWTGYDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPIFEAL 477

Query: 242  DTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTDDEAEIRXXXXXXXX 63
            DTLGN KWRINKRVL ++DR+W++GG++A LVDREDVPLPE+PDT+DEAEI+        
Sbjct: 478  DTLGNTKWRINKRVLGVVDRLWANGGRVASLVDREDVPLPEKPDTEDEAEIQKWKWKVKA 537

Query: 62   XXKENSERHSQRCDIELKLA 3
              K+N+ERHS RCD+ELKLA
Sbjct: 538  ANKQNNERHSLRCDVELKLA 557


>gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus guttatus]
          Length = 983

 Score =  633 bits (1633), Expect = e-179
 Identities = 332/551 (60%), Positives = 396/551 (71%), Gaps = 4/551 (0%)
 Frame = -2

Query: 1643 MWRSIAKQAYSKKWKFXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPGF 1464
            MWR+++KQ+Y + +K             + K  +DS+F +   P    + +N      GF
Sbjct: 1    MWRNLSKQSYLRNFKVFSESHPSPNAFSAGKSPKDSIFVENAVPRQLRSCINTCGSELGF 60

Query: 1463 NRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDGSGVDEIH 1284
             R          +   + A+S++ F   G    ++GY                  VDE+ 
Sbjct: 61   RRALVFWRPPREASCPNYAISSHTFRFFGS---TRGYAAAAEALVSTSEEE----VDELQ 113

Query: 1283 ELVAEVNKEDKMKSNFKQHRK---LVDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQELL 1113
            EL+ E+NKE  +KS   + +K   LV GMG GKYN LRRRQ+K+ETEAWE AAKEYQELL
Sbjct: 114  ELIEEINKEINVKSTDNREQKQPKLVGGMGLGKYNSLRRRQIKIETEAWENAAKEYQELL 173

Query: 1112 VDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMMAV 933
             DMCEQKLAPNLPY+KSLFLGW+EPLRDAIA EQ+LCK+GKNR AYAPYF  LPA+MMAV
Sbjct: 174  EDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYFDQLPAEMMAV 233

Query: 932  ITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKDPKSES-D 756
            IT              GSARVVQAA  IGEA+EHEVRIH FL+  K+K+       E  D
Sbjct: 234  ITMHKLMGLLMTGGGNGSARVVQAACHIGEAIEHEVRIHKFLDNCKRKNALNRTSEEGPD 293

Query: 755  PVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQLLMETAYI 576
            P  KE+ +LRKKV  L+KKQK+QQVR IV+ +DD KPWGQD QVKVGCRLIQ+L +TAYI
Sbjct: 294  PEAKEQDRLRKKVKILMKKQKVQQVRNIVRHQDDLKPWGQDAQVKVGCRLIQILTQTAYI 353

Query: 575  QPPVDQLGDGPPDIRPAFVHTLKTVVKETHSRRYGVIECDPLVRKGLEKSARHMVIPYMP 396
            QPPVDQ  DG PDIRPAFVHTLK V     SRRYGVIECDPLVRKG+EK+ARHMVIPYMP
Sbjct: 354  QPPVDQRDDGAPDIRPAFVHTLKCVETLKGSRRYGVIECDPLVRKGMEKTARHMVIPYMP 413

Query: 395  MLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEALDTLGNAKWR 216
            MLVPPLNW GY+RGAYLFLPSY+MRTHGAKQQREAVKRT +++LEP+F+AL+TLGN KWR
Sbjct: 414  MLVPPLNWTGYERGAYLFLPSYMMRTHGAKQQREAVKRTPKQELEPIFQALNTLGNTKWR 473

Query: 215  INKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTDDEAEIRXXXXXXXXXXKENSERH 36
            +NKR+LS++DRIW++GG+LADLVDRED+PLPEEPDT+DEAEI+          K NSERH
Sbjct: 474  VNKRILSVVDRIWANGGRLADLVDREDLPLPEEPDTEDEAEIKKWKWKVKAVKKVNSERH 533

Query: 35   SQRCDIELKLA 3
            SQRCDIELKLA
Sbjct: 534  SQRCDIELKLA 544


>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            tuberosum]
          Length = 993

 Score =  627 bits (1616), Expect = e-177
 Identities = 343/574 (59%), Positives = 401/574 (69%), Gaps = 27/574 (4%)
 Frame = -2

Query: 1643 MWRSIAKQAYSKKWKFXXXXXXXXXXXXSIKISQDSVFSQ------RIRPVGYSTYVNYR 1482
            MWR I+KQAYS+K                ++ + DS F        + RP+       YR
Sbjct: 1    MWRYISKQAYSRK----------------LRNTHDSDFLGFAQSFGKTRPLQGLCEEIYR 44

Query: 1481 YPLPG------FNRIGGLSSQ-----EDNSGRFSLAVSTNP--------FNISGFAHYSK 1359
             P  G      F R+ G S       ED+     L  S +         F + G    S 
Sbjct: 45   NPNLGVSQSSIFTRVNGKSRCLDGMCEDSCRNHYLGFSESSIFSRVKGDFRVCG----SL 100

Query: 1358 GYXXXXXXXXXXXXXXDGSGVDEIHELVAEVNKEDK-MKSNFKQHR-KLVDGMGQGKYNM 1185
            G                   +DEI EL+ E+NKE++ +K+N +  + K V GMG GKYN+
Sbjct: 101  GILRSYGSAAEAIASTSEEDIDEIQELIEEMNKENEALKTNLQPKQPKTVGGMGIGKYNL 160

Query: 1184 LRRRQVKMETEAWEEAAKEYQELLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQEL 1005
            LRRRQ+K+ETEAWE+AAKEYQELL+DMCEQKLAPNLPY+KSLFLGW+EPLRDAIA EQ+L
Sbjct: 161  LRRRQIKVETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQKL 220

Query: 1004 CKQGKNRMAYAPYFILLPADMMAVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEV 825
            C +GKNR AYAP+F  LPA+MMAVIT              GSARVVQAAS IGEA+EHE 
Sbjct: 221  CDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEA 280

Query: 824  RIHSFLEKTKKKSIAKDPKSESDPVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKP 645
            RIH FLEKTKK ++    +  +  ++KE  +LRKKV  L+KKQKLQQVR+IVK +DD KP
Sbjct: 281  RIHRFLEKTKKNALDGSLEETAGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKP 340

Query: 644  WGQDTQVKVGCRLIQLLMETAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETHSRRYGVI 465
            WGQD  VKVGC+LIQ+L+ETAYIQPP DQL D PPDIRPAF+HTLKTV     SRRYGVI
Sbjct: 341  WGQDNLVKVGCKLIQILIETAYIQPPNDQLDDCPPDIRPAFMHTLKTVETVKGSRRYGVI 400

Query: 464  ECDPLVRKGLEKSARHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVK 285
            +CDPLVRKGL+K+ARHMVIPYMPMLVPP NW GYDRGAYLFLPSY+MRTHGAKQQREAVK
Sbjct: 401  QCDPLVRKGLDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVK 460

Query: 284  RTSRKQLEPVFEALDTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTD 105
            R  +KQLEPVF+ALDTLGN KWR+NKRVL I+DRIW+SGG+LADLVDREDVPLPEEPDT+
Sbjct: 461  RVPKKQLEPVFQALDTLGNTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPEEPDTE 520

Query: 104  DEAEIRXXXXXXXXXXKENSERHSQRCDIELKLA 3
            DE EI+          KEN ERHSQRCDIELKLA
Sbjct: 521  DEEEIKKWKWKVKAAKKENCERHSQRCDIELKLA 554


>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
            Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 1; Flags: Precursor
            gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score =  627 bits (1616), Expect = e-177
 Identities = 337/570 (59%), Positives = 404/570 (70%), Gaps = 23/570 (4%)
 Frame = -2

Query: 1643 MWRSIAKQAYSKKWKFXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPG- 1467
            MWR I+KQAYS+K++              +  SQ S    + RP+      +   P  G 
Sbjct: 1    MWRYISKQAYSRKFR-------NSHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGL 53

Query: 1466 -----FNRIG-------GLSSQEDNSGRFSLAVSTNPFNISGFAHY-------SKGYXXX 1344
                 F+RI        G+  +   +    L+ ++   ++ G           S G+   
Sbjct: 54   SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRS 113

Query: 1343 XXXXXXXXXXXDGSGVDEIHELVAEVNKEDK-MKSNFKQHR-KLVDGMGQGKYNMLRRRQ 1170
                           +DEI EL+ E+NKE++ +K+N +  + K + GMG GKYN+LRRRQ
Sbjct: 114  YGSAAEAIASTSEEDIDEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYNLLRRRQ 173

Query: 1169 VKMETEAWEEAAKEYQELLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGK 990
            +K+ETEAWEEAAKEYQELL+DMCEQKLAPNLPYMKSLFLGW+EPLRDAIA EQ+LC +GK
Sbjct: 174  IKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGK 233

Query: 989  NRMAYAPYFILLPADMMAVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSF 810
            NR AYAP+F  LPA+MMAVIT              GSARVVQAAS IGEA+EHE RIH F
Sbjct: 234  NRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRF 293

Query: 809  LEKTKKKS-IAKDPKSESDPVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQD 633
            LEKTKK + ++ D +     ++KE  ++RKKV  L+KKQKLQQVR+IVK +DD KPWGQD
Sbjct: 294  LEKTKKSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQD 353

Query: 632  TQVKVGCRLIQLLMETAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETHSRRYGVIECDP 453
              VKVGCRLIQ+LMETAYIQPP DQL D PPDIRPAFVHTLKTV     SRRYGVI+CDP
Sbjct: 354  NLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQCDP 413

Query: 452  LVRKGLEKSARHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSR 273
            LVRKGL+K+ARHMVIPYMPMLVPP +W+GYD+GAYLFLPSY+MRTHGAKQQREAVKR  +
Sbjct: 414  LVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPK 473

Query: 272  KQLEPVFEALDTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTDDEAE 93
            KQLEPVF+ALDTLGN KWR+N++VL I+DRIW+SGG+LADLVDREDVPLPEEPD +DEA+
Sbjct: 474  KQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQ 533

Query: 92   IRXXXXXXXXXXKENSERHSQRCDIELKLA 3
            IR          KEN ERHSQRCDIELKLA
Sbjct: 534  IRKWKWKVKGVKKENCERHSQRCDIELKLA 563


>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score =  626 bits (1614), Expect = e-176
 Identities = 337/570 (59%), Positives = 403/570 (70%), Gaps = 23/570 (4%)
 Frame = -2

Query: 1643 MWRSIAKQAYSKKWKFXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPG- 1467
            MWR I+K AYS+K++              +  SQ S    + RP+      +   P  G 
Sbjct: 1    MWRYISKHAYSRKFR-------NSHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGL 53

Query: 1466 -----FNRIG-------GLSSQEDNSGRFSLAVSTNPFNISGFAHY-------SKGYXXX 1344
                 F+RI        G+  +   +    L+ ++   ++ G           S G+   
Sbjct: 54   SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRS 113

Query: 1343 XXXXXXXXXXXDGSGVDEIHELVAEVNKEDK-MKSNFKQHR-KLVDGMGQGKYNMLRRRQ 1170
                           +DEI EL+ E+NKE++ +K+N +  + K + GMG GKYN+LRRRQ
Sbjct: 114  YGSAAEAIASTSEEDIDEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYNLLRRRQ 173

Query: 1169 VKMETEAWEEAAKEYQELLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGK 990
            +K+ETEAWEEAAKEYQELL+DMCEQKLAPNLPYMKSLFLGW+EPLRDAIA EQ+LC +GK
Sbjct: 174  IKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGK 233

Query: 989  NRMAYAPYFILLPADMMAVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSF 810
            NR AYAP+F  LPA+MMAVIT              GSARVVQAAS IGEA+EHE RIH F
Sbjct: 234  NRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRF 293

Query: 809  LEKTKKKS-IAKDPKSESDPVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQD 633
            LEKTKK + ++ D +     ++KE  +LRKKV  L+KKQKLQQVR+IVK +DD KPWGQD
Sbjct: 294  LEKTKKSNALSGDLEDTPGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQD 353

Query: 632  TQVKVGCRLIQLLMETAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETHSRRYGVIECDP 453
              VKVGCRLIQ+LMETAYIQPP DQL D PPDIRPAFVHTLKTV     SRRYGVI+CDP
Sbjct: 354  NLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQCDP 413

Query: 452  LVRKGLEKSARHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSR 273
            LVRKGL+K+ARHMVIPYMPMLVPP +W+GYD+GAYLFLPSY+MRTHGAKQQREAVKR  +
Sbjct: 414  LVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPK 473

Query: 272  KQLEPVFEALDTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTDDEAE 93
            KQLEPVF+ALDTLGN KWR+N++VL I+DRIW+SGG+LADLVDREDVPLPEEPD +DEA+
Sbjct: 474  KQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQ 533

Query: 92   IRXXXXXXXXXXKENSERHSQRCDIELKLA 3
            IR          KEN ERHSQRCDIELKLA
Sbjct: 534  IRKWKWKVKGVKKENCERHSQRCDIELKLA 563


>ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            lycopersicum]
          Length = 993

 Score =  625 bits (1612), Expect = e-176
 Identities = 341/574 (59%), Positives = 402/574 (70%), Gaps = 27/574 (4%)
 Frame = -2

Query: 1643 MWRSIAKQAYSKKWKFXXXXXXXXXXXXSIKISQDSVFS------QRIRPVGYSTYVNYR 1482
            MWR I+KQ YS+K                ++ + DS F       ++ RP+       YR
Sbjct: 1    MWRYISKQVYSRK----------------LRNTHDSDFLGFAQSFRKTRPLQGLCEEGYR 44

Query: 1481 YPLPG------FNRIGGLSSQ-----EDNSGRFSLAVSTNP--------FNISGFAHYSK 1359
             P  G      F+R+ G S       ED+     L  S +         F + G    S 
Sbjct: 45   NPNLGVSQSSIFSRVNGKSRCLDGMCEDSCRNHYLGFSESSIFSRVKGDFRVCG----SL 100

Query: 1358 GYXXXXXXXXXXXXXXDGSGVDEIHELVAEVNKEDK-MKSNFKQHR-KLVDGMGQGKYNM 1185
            G                   +DEI EL+ E+NKE++ +K+N +  + K V GMG GKYN+
Sbjct: 101  GVLRSYGSAAEAIASTSEEDIDEIQELIEEMNKENEALKTNLQPKQPKTVGGMGIGKYNL 160

Query: 1184 LRRRQVKMETEAWEEAAKEYQELLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQEL 1005
            LRRRQ+K+ETEAWE+AAKEYQELL+DMCEQKLAPNLPY+KSLFLGW+EPL+DAIA EQ+L
Sbjct: 161  LRRRQIKVETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLKDAIAAEQKL 220

Query: 1004 CKQGKNRMAYAPYFILLPADMMAVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEV 825
            C +GKNR AYAP+F  LPA+MMAVIT              GSARVVQAAS IGEA+EHE 
Sbjct: 221  CDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEA 280

Query: 824  RIHSFLEKTKKKSIAKDPKSESDPVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKP 645
            RIH FLEKTKK ++    +  +  ++KE  +LRKKV  L+KKQKLQQVR+IVK +DD KP
Sbjct: 281  RIHRFLEKTKKNALDGSLEETAGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKP 340

Query: 644  WGQDTQVKVGCRLIQLLMETAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETHSRRYGVI 465
            WGQD  VKVGCRLIQ+L+ETAYIQPP DQL D PPDIRPAF+HTLKTV     SRRYGVI
Sbjct: 341  WGQDNLVKVGCRLIQILIETAYIQPPNDQLEDCPPDIRPAFMHTLKTVDTVKGSRRYGVI 400

Query: 464  ECDPLVRKGLEKSARHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVK 285
            +CDPLVRKGL+K+ARHMVIPYMPMLVPP NW GYDRGAYLFLPSY+MRTHGAKQQREAVK
Sbjct: 401  QCDPLVRKGLDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVK 460

Query: 284  RTSRKQLEPVFEALDTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTD 105
            R  +KQLEPVF+ALDTLGN KWR+NKRVL I+DRIW+SGG+LADLVDREDVPLPEEPDT+
Sbjct: 461  RVPKKQLEPVFQALDTLGNTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPEEPDTE 520

Query: 104  DEAEIRXXXXXXXXXXKENSERHSQRCDIELKLA 3
            +E EI+          KEN ERHSQRCDIELKLA
Sbjct: 521  NEEEIKKWKWKVKAAKKENCERHSQRCDIELKLA 554


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
            Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 1B; Flags: Precursor
          Length = 1002

 Score =  624 bits (1610), Expect = e-176
 Identities = 336/570 (58%), Positives = 402/570 (70%), Gaps = 23/570 (4%)
 Frame = -2

Query: 1643 MWRSIAKQAYSKKWKFXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPG- 1467
            MWR I+K AYS+K++              +  SQ S    + RP+      +  +P  G 
Sbjct: 1    MWRYISKHAYSRKFR-------NSHDSALLGFSQYSSSFGKTRPLQCLCEESTTHPNLGL 53

Query: 1466 -----FNRIG-------GLSSQEDNSGRFSLAVSTNPFNISGFAHY-------SKGYXXX 1344
                 F+RI        G+  +   +    L+ ++   ++ G           S G    
Sbjct: 54   SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRS 113

Query: 1343 XXXXXXXXXXXDGSGVDEIHELVAEVNKEDK-MKSNFKQHR-KLVDGMGQGKYNMLRRRQ 1170
                           +DEI EL+ E++KE++ +K+N +  + K + GMG GKYN LRRRQ
Sbjct: 114  YGSAAEAIVSTSEEDIDEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNFLRRRQ 173

Query: 1169 VKMETEAWEEAAKEYQELLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGK 990
            +K+ETEAWEEAAKEYQELL+DMCEQKLAPNLPYMKSLFLGW+EPLRDAIA EQ+LC +GK
Sbjct: 174  IKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGK 233

Query: 989  NRMAYAPYFILLPADMMAVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSF 810
            NR AYAP+F  LPA+MMAVIT              GSARVVQAAS IGEA+EHE RIH F
Sbjct: 234  NRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRF 293

Query: 809  LEKTKKKS-IAKDPKSESDPVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQD 633
            LEKTKK + ++ D +     ++KE  +LRKKV  L+KKQKL+QVR+IVK +DD KPWGQD
Sbjct: 294  LEKTKKSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQD 353

Query: 632  TQVKVGCRLIQLLMETAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETHSRRYGVIECDP 453
              VKVGCRLIQ+LMETAYIQPP DQL DGPPDIRPAFVHTLKTV     SRRYGVI+CDP
Sbjct: 354  NLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVETMKGSRRYGVIQCDP 413

Query: 452  LVRKGLEKSARHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSR 273
            LVRKGL+K+ARHMVIPYMPMLVPP +W+GYD+G YLFLPSY+MRTHGAKQQREAVKR  +
Sbjct: 414  LVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPK 473

Query: 272  KQLEPVFEALDTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTDDEAE 93
            KQLEPVF+ALDTLGN KWR+N++VL I+DRIW+SGG+LADLVDREDVPLPE PDT+DEAE
Sbjct: 474  KQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPDTEDEAE 533

Query: 92   IRXXXXXXXXXXKENSERHSQRCDIELKLA 3
            IR          KEN ERHSQRCDIELKLA
Sbjct: 534  IRKWKWKVKGVKKENCERHSQRCDIELKLA 563


>ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
            putative [Ricinus communis] gi|223546175|gb|EEF47677.1|
            DNA-directed RNA polymerase 2, chloroplast/mitochondrial
            precursor, putative [Ricinus communis]
          Length = 997

 Score =  624 bits (1608), Expect = e-176
 Identities = 338/570 (59%), Positives = 405/570 (71%), Gaps = 23/570 (4%)
 Frame = -2

Query: 1643 MWRSIAKQAY--SKKWKFXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLP 1470
            MWR+ A++    SKK  F              +++QD    Q++R     T +   Y   
Sbjct: 1    MWRNFARRTSLSSKKLNFSSDCT---------QLNQDLDILQKVRHPEAQTLLCSPYSFL 51

Query: 1469 GFNRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYS-KGYXXXXXXXXXXXXXXDGSGVD 1293
            G  RI GLSSQ     + S    TNPF   GF+H+  KGY              D SG D
Sbjct: 52   GSRRISGLSSQNHEFIKPSFTNLTNPF---GFSHFLFKGYATAAAQVIASTDESDFSGCD 108

Query: 1292 EIHELVAEVNKEDK-MKSNFKQH------RKLVDGMGQGKYNMLRRRQVKMETEAWEEAA 1134
            E+ E + E+NK  K M ++F+Q       +K + GMG GKY +L++RQ+KMETEAWEEAA
Sbjct: 109  ELQEQIEEINKHHKKMDAHFRQQQQQQQRKKTIAGMGIGKYTILKKRQIKMETEAWEEAA 168

Query: 1133 KEYQELLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILL 954
            +EYQELL DMCEQKLAPNLPY+KSLFLGW+EPLRDAIA EQEL ++  N++++ PYF  L
Sbjct: 169  REYQELLTDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAKEQELSREKNNKLSHGPYFDAL 228

Query: 953  PADMMAVITXXXXXXXXXXXXXXG-SARVVQAASQIGEALEHEVRIHSFLEKTKKKSIA- 780
            PADMMAVIT                S RVVQAA  +GEA+EHE RIH FLEKTKKK  + 
Sbjct: 229  PADMMAVITMHKLMGLLMTTNGGNGSVRVVQAACAVGEAIEHEARIHRFLEKTKKKKKST 288

Query: 779  --KDPKSESDPVI-------KEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQ 627
              ++P+ + +PV        KE+ KLRKKVT L+KKQK+QQVR + KG DDS PWGQ+ Q
Sbjct: 289  KNEEPEGKLEPVTSDAEKLAKEQEKLRKKVTELMKKQKVQQVRGLTKGHDDSMPWGQEAQ 348

Query: 626  VKVGCRLIQLLMETAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETH--SRRYGVIECDP 453
            VKVGCRLIQLL+ETAYIQPPV+QLGDG PDIRPAF+HTLK V+K+T   SRRYGVIECDP
Sbjct: 349  VKVGCRLIQLLIETAYIQPPVNQLGDGLPDIRPAFMHTLKNVMKDTQKTSRRYGVIECDP 408

Query: 452  LVRKGLEKSARHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSR 273
            +VR GLEKSARHMVIPYMPMLVPPLNW GYD+GAYLFLPSYVMRTHGAKQQR AVKRT  
Sbjct: 409  IVRNGLEKSARHMVIPYMPMLVPPLNWEGYDQGAYLFLPSYVMRTHGAKQQRNAVKRTPW 468

Query: 272  KQLEPVFEALDTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTDDEAE 93
            KQLEPV+EAL+TLGN KWRINK++L+++DRIW++GG+LA L+DRED PLPEE +T+DE E
Sbjct: 469  KQLEPVYEALNTLGNTKWRINKKILTVVDRIWANGGRLAGLIDREDEPLPEELETEDENE 528

Query: 92   IRXXXXXXXXXXKENSERHSQRCDIELKLA 3
            I+          KENSERHSQRCDIELKLA
Sbjct: 529  IKKWKWKVKNVKKENSERHSQRCDIELKLA 558


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score =  623 bits (1607), Expect = e-176
 Identities = 337/562 (59%), Positives = 397/562 (70%), Gaps = 12/562 (2%)
 Frame = -2

Query: 1652 PLRMWRSIAKQAYSKKWK--FXXXXXXXXXXXXSIKISQDSVFSQRIRPVGY--STYVNY 1485
            P  MWR+IAK+A  +  +                +  SQD +F + ++   +  S+  + 
Sbjct: 37   PTVMWRNIAKRAIPRAPRKCVYLDSQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSSCSSS 96

Query: 1484 RYPLPGFNRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDG 1305
             +   GF RIG +SS+ED  GR S     N    SGF    K Y              D 
Sbjct: 97   GFSEMGFRRIGEISSREDAVGRPSFGCLRNQMGFSGFC--PKSYASVAEAVSSTDVEEDV 154

Query: 1304 SGVDEIHELVAEVNKEDKMKSNFKQHRKLV--DGMGQGKYNMLRRRQVKMETEAWEEAAK 1131
            S  DEI EL+ E+ KE+K + NFK+  KL    GM QG+Y  LRRRQVK+ETEAWE AAK
Sbjct: 155  SASDEIQELLGEMKKEEKRQVNFKRREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAK 214

Query: 1130 EYQELLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLP 951
            EY+ELL+DMCEQKLAPNLPYMKSLFLGW+EPLRDAI  EQELC+ GKN+ AYAPYF  LP
Sbjct: 215  EYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLP 274

Query: 950  ADMMAVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKDP 771
            ADMM+VIT              GS RVVQAA  IG+A+E EVRIH+FLEKTK+K + KD 
Sbjct: 275  ADMMSVITMHKLVGLLMTGGEHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDK 334

Query: 770  KSES---DPVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQ 600
              E    DPVI E+ KLRKKVT L+KKQKL   R+IVKG D+SKPWG + + KVG RLI+
Sbjct: 335  NVEGGGFDPVIHEQEKLRKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIE 394

Query: 599  LLMETAYIQPPVD-QLGDGPPDIRPAFVHTLKTVVKETHS--RRYGVIECDPLVRKGLEK 429
            LLM+TAYIQPPVD QL D PPDIRPAFVHT KTV++E     RR+GVIECDPLV+KGLE+
Sbjct: 395  LLMQTAYIQPPVDNQLADTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLER 454

Query: 428  SARHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFE 249
            +ARHMVIPY+PMLVPPL W GYD+GA+LFLPSYVMRTHGA+QQREAVKR  R QLEPVFE
Sbjct: 455  TARHMVIPYVPMLVPPLKWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFE 514

Query: 248  ALDTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTDDEAEIRXXXXXX 69
            AL+TLGN KWRINKR+  ++DRIW+ GG LADLVDR DVPLPE+PDT+DEA++R      
Sbjct: 515  ALNTLGNTKWRINKRLFDVVDRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKV 574

Query: 68   XXXXKENSERHSQRCDIELKLA 3
                K NSERHSQRCDIELKLA
Sbjct: 575  KSVKKANSERHSQRCDIELKLA 596


>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score =  622 bits (1605), Expect = e-175
 Identities = 335/570 (58%), Positives = 402/570 (70%), Gaps = 23/570 (4%)
 Frame = -2

Query: 1643 MWRSIAKQAYSKKWKFXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPG- 1467
            MWR I+K AYS+K++              +  SQ S    + RP+      +  +P  G 
Sbjct: 1    MWRYISKHAYSRKFR-------NSHDSALLGFSQYSSSFGKTRPLQCLCEESTTHPNLGL 53

Query: 1466 -----FNRIG-------GLSSQEDNSGRFSLAVSTNPFNISGFAHY-------SKGYXXX 1344
                 F+RI        G+  +   +    L+ ++   ++ G           S G    
Sbjct: 54   SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRS 113

Query: 1343 XXXXXXXXXXXDGSGVDEIHELVAEVNKEDK-MKSNFKQHR-KLVDGMGQGKYNMLRRRQ 1170
                           +DEI EL+ E++KE++ +K+N +  + K + GMG GKYN LRRRQ
Sbjct: 114  YGSAAEAIVSTSEEDIDEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNFLRRRQ 173

Query: 1169 VKMETEAWEEAAKEYQELLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGK 990
            +K+ETEAWEEAAKEYQELL+DMCEQKLAPNLPYMKSLFLGW+EPLRDAIA EQ+LC +GK
Sbjct: 174  IKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGK 233

Query: 989  NRMAYAPYFILLPADMMAVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSF 810
            NR AYAP+F  LPA+MMAVIT              GSARVVQAAS IGEA+EHE RIH F
Sbjct: 234  NRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRF 293

Query: 809  LEKTKKKS-IAKDPKSESDPVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQD 633
            LEKTKK + ++ D +     ++KE  +LRKKV  L+KKQKL+QVR+IVK +DD KPWGQD
Sbjct: 294  LEKTKKSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQD 353

Query: 632  TQVKVGCRLIQLLMETAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETHSRRYGVIECDP 453
              VKVGCRLIQ+LMETAYIQPP DQL DGPPDIRPAFVHTLKTV     SRRYGVI+CDP
Sbjct: 354  NLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVETMKGSRRYGVIQCDP 413

Query: 452  LVRKGLEKSARHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSR 273
            LVRKGL+K+ARHMVIPYMPMLVPP +W+GYD+G YLFLPSY+MRTHGAKQQREAVKR  +
Sbjct: 414  LVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPK 473

Query: 272  KQLEPVFEALDTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTDDEAE 93
            KQLEPVF+ALDTLGN KWR+N++VL I++RIW+SGG+LADLVDREDVPLPE PDT+DEAE
Sbjct: 474  KQLEPVFQALDTLGNTKWRVNRKVLGIVNRIWASGGRLADLVDREDVPLPEAPDTEDEAE 533

Query: 92   IRXXXXXXXXXXKENSERHSQRCDIELKLA 3
            IR          KEN ERHSQRCDIELKLA
Sbjct: 534  IRKWKWKVKGVKKENCERHSQRCDIELKLA 563


>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris]
          Length = 1002

 Score =  622 bits (1604), Expect = e-175
 Identities = 336/570 (58%), Positives = 402/570 (70%), Gaps = 23/570 (4%)
 Frame = -2

Query: 1643 MWRSIAKQAYSKKWKFXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPG- 1467
            MWR I+KQAYS+K++              +  SQ S    + RP+      +   P  G 
Sbjct: 1    MWRYISKQAYSRKFR-------NSHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGL 53

Query: 1466 -----FNRIG-------GLSSQEDNSGRFSLAVSTNPFNISGFAHY-------SKGYXXX 1344
                 F+RI        G+  +   +    L+ ++   ++ G           S G+   
Sbjct: 54   SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRS 113

Query: 1343 XXXXXXXXXXXDGSGVDEIHELVAEVNKEDK-MKSNFKQHR-KLVDGMGQGKYNMLRRRQ 1170
                            DEI EL+ E+NKE++ +K+N +  + K + GMG GKYN+LRRRQ
Sbjct: 114  YGSAAEAIASTSEEDTDEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYNLLRRRQ 173

Query: 1169 VKMETEAWEEAAKEYQELLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGK 990
            +K+ETEAWEEAAKEYQELL+DMCEQKLAPNLPYMKSLFLGW+EPLRDAIA EQ+LC +GK
Sbjct: 174  IKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGK 233

Query: 989  NRMAYAPYFILLPADMMAVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSF 810
            NR A AP+F  LPA+MMAVIT              GSARVVQAAS IGEA+EHE RIH F
Sbjct: 234  NRGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSARVVQAASHIGEAIEHEARIHRF 293

Query: 809  LEKTKKKS-IAKDPKSESDPVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQD 633
            LEKTKK + ++ D +     ++KE  ++RKKV  L+KKQKLQQVR+IVK +DD KPWGQD
Sbjct: 294  LEKTKKSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQD 353

Query: 632  TQVKVGCRLIQLLMETAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETHSRRYGVIECDP 453
              VKVGCRLIQ+LMETAYIQPP DQL D PPDIRPAFVHTLKTV     SRRYGVI+CDP
Sbjct: 354  NLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQCDP 413

Query: 452  LVRKGLEKSARHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSR 273
            LVRKGL+K+ARHMVIPYMPMLVPP +W+GYD+GAYLFLPSY+MRTHGAKQQREAVKR  +
Sbjct: 414  LVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPK 473

Query: 272  KQLEPVFEALDTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTDDEAE 93
            KQLEPVF+ALDTLGN KWR+N++VL I+DRIW+SGG+LADLVDREDVPLPEEPD +DEA+
Sbjct: 474  KQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQ 533

Query: 92   IRXXXXXXXXXXKENSERHSQRCDIELKLA 3
            IR          KEN ERHSQRCDIELKLA
Sbjct: 534  IRKWKWKVKGVKKENCERHSQRCDIELKLA 563


>ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa]
            gi|550332836|gb|EEE88785.2| hypothetical protein
            POPTR_0008s11200g [Populus trichocarpa]
          Length = 988

 Score =  619 bits (1596), Expect = e-174
 Identities = 342/562 (60%), Positives = 398/562 (70%), Gaps = 15/562 (2%)
 Frame = -2

Query: 1643 MWRSIAKQAYSKKWKFXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPGF 1464
            MWR++AK + SK+ KF                 +DS F + IR       +N  +     
Sbjct: 1    MWRTLAKCSPSKQLKFPSNSS---------NFFKDSTFIENIRSPDAKKCLNSAFSFLCS 51

Query: 1463 NRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDG-SGVDEI 1287
             +IG +  Q D     S    T PF++S F  + KGY                 SG D+ 
Sbjct: 52   RQIG-VFPQNDKLCNSSFGDLTKPFDLSPF--FFKGYATAAAADVIPSNDESDLSGSDDF 108

Query: 1286 HELVAEVNKE-DKMKSNFK-QHRKLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQELL 1113
              L+ +VNK   KM+  F+ Q +K+V GMG GKY +L+RRQ+KMETEAWE+AA+EYQE+L
Sbjct: 109  QGLMEQVNKHFQKMEPQFRPQEKKMVAGMGIGKYAILKRRQIKMETEAWEQAAQEYQEML 168

Query: 1112 VDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMMAV 933
             DMCEQKLAPNLPY+KSLFLGW+EPLRDAI  EQELCK+   R+++  +F  LPADMMAV
Sbjct: 169  EDMCEQKLAPNLPYVKSLFLGWFEPLRDAIVAEQELCKRNL-RVSHRAHFSDLPADMMAV 227

Query: 932  ITXXXXXXXXXXXXXXG-SARVVQAASQIGEALEHEVRIHSFLEKTKKKSI--AKDPKSE 762
            IT                S RVVQAAS +GEA+EHE RIH FLEKTKK+    AK  + E
Sbjct: 228  ITMHKLMGLLMTGNGGSASIRVVQAASVVGEAIEHEGRIHKFLEKTKKRKNVEAKISEGE 287

Query: 761  SDPVI-------KEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLI 603
            SD  I       KE+ KLRKKVTTLIKKQK+QQVR IVKG DDS+PWGQ+  VKVG RLI
Sbjct: 288  SDAAIEEGEKLSKEQEKLRKKVTTLIKKQKVQQVRRIVKGHDDSRPWGQEEHVKVGSRLI 347

Query: 602  QLLMETAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETH--SRRYGVIECDPLVRKGLEK 429
            QL++ETAYIQPP+DQ+GDGPPDIRPAFVHTLKT+ K+T   SRRYGVIECDPLVRKGLEK
Sbjct: 348  QLMIETAYIQPPIDQIGDGPPDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEK 407

Query: 428  SARHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFE 249
            SARHMVIPYMPMLVPPLNW GYD+GA+LFLPSYVMR HG+KQQR+AVKR SR QLEPVF+
Sbjct: 408  SARHMVIPYMPMLVPPLNWTGYDQGAHLFLPSYVMRIHGSKQQRDAVKRASRNQLEPVFK 467

Query: 248  ALDTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTDDEAEIRXXXXXX 69
            ALDTLGN KWRINKRVL ++DRIW+SGG LA LVDRED PLPEEP T+DEAEIR      
Sbjct: 468  ALDTLGNTKWRINKRVLVVVDRIWASGGHLAGLVDREDAPLPEEPQTEDEAEIRKWTWKV 527

Query: 68   XXXXKENSERHSQRCDIELKLA 3
                KENSERHSQRCDIELKLA
Sbjct: 528  RSVKKENSERHSQRCDIELKLA 549


>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
            gi|462411068|gb|EMJ16117.1| hypothetical protein
            PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score =  615 bits (1585), Expect = e-173
 Identities = 321/552 (58%), Positives = 388/552 (70%), Gaps = 5/552 (0%)
 Frame = -2

Query: 1643 MWRSIAKQAYSKKWKFXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPGF 1464
            +WR+ AKQA S+K +F             + I Q+SVF    +P   S+  + R+   GF
Sbjct: 36   VWRNFAKQAISRKQRFHINSQSFSRAYSLLGICQESVFPGNFKPFELSSCSSLRFSEVGF 95

Query: 1463 NRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDGSGVDEIH 1284
               G +SS ED   + S     NP   +GF    KGY              + S VDE+ 
Sbjct: 96   RGKGAISSPEDCMCKPSFWSVRNPIWFNGFC--PKGYASVAEAVSSTDVEEEVSVVDEVQ 153

Query: 1283 ELVAEVNKEDKMKSNFKQHRKL--VDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQELLV 1110
            EL+ +++ E+K ++ +KQ  +     GMGQGKY+ML+RRQ+K+ETEAWE AAKEY+EL++
Sbjct: 154  ELLQQMSIEEKREAQYKQRTRQNRARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMM 213

Query: 1109 DMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMMAVI 930
            DMCEQKLAPNLPYMKSLFLGW+EPLR+AI  EQ+LC++GKN+ AYAPY   LPADMM+VI
Sbjct: 214  DMCEQKLAPNLPYMKSLFLGWFEPLRNAIDKEQDLCRKGKNKTAYAPYIDQLPADMMSVI 273

Query: 929  TXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKDPKS-ESDP 753
            T              G+ RVV AA  IGEA+E EVRIH FLE T+KK + KD ++ ESD 
Sbjct: 274  TMHKLMGLLMTGGEHGTCRVVAAACTIGEAIEQEVRIHKFLEMTRKKKVDKDQENGESDA 333

Query: 752  VIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQLLMETAYIQ 573
              KE  KL KKVT L+KKQKL+ VR IV   D SK W  + + KVG RLI+LL +TA+IQ
Sbjct: 334  AKKEREKLNKKVTNLMKKQKLKAVRGIVSKHDASKSWSLEARAKVGSRLIELLTQTAFIQ 393

Query: 572  PPVDQLGDGPPDIRPAFVHTLKTVVKETH--SRRYGVIECDPLVRKGLEKSARHMVIPYM 399
            PP DQL DGPPDIRPAFVHT +TV K+    SRRYGVIECDPLV KGLEK+ARHMVIPYM
Sbjct: 394  PPADQLADGPPDIRPAFVHTFRTVAKDAKNASRRYGVIECDPLVLKGLEKTARHMVIPYM 453

Query: 398  PMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEALDTLGNAKW 219
            PMLVPPLNW GYD+G Y FLPSYVMR HGA+QQREA+KRT R+QLEPVF+ALD LGN +W
Sbjct: 454  PMLVPPLNWTGYDKGGYFFLPSYVMRIHGARQQREAIKRTPREQLEPVFKALDALGNTRW 513

Query: 218  RINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTDDEAEIRXXXXXXXXXXKENSER 39
            R+NKRVLS++DRIW+SGG LADLVDR DVPLPEEPDT+DE  ++          KEN ER
Sbjct: 514  RVNKRVLSVVDRIWASGGHLADLVDRNDVPLPEEPDTEDETLLKKWKWKVKSVKKENMER 573

Query: 38   HSQRCDIELKLA 3
            HSQRCD ELKLA
Sbjct: 574  HSQRCDTELKLA 585


>ref|XP_006484275.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like [Citrus
            sinensis]
          Length = 980

 Score =  601 bits (1550), Expect = e-169
 Identities = 321/561 (57%), Positives = 388/561 (69%), Gaps = 14/561 (2%)
 Frame = -2

Query: 1643 MWRSIAKQAYSKKWKFXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPGF 1464
            MWR++A+Q+ ++ +KF              K+SQ + F ++I  +   T ++   PL GF
Sbjct: 1    MWRNLARQSSTRNFKFSPS-----------KVSQTTNFLKKITSLETQTLLDSSCPLLGF 49

Query: 1463 NRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDGSGVDEIH 1284
             R   LSSQ+ N G+ +   S  PF +     Y+                   SG +E+ 
Sbjct: 50   RRTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESEL-------SGSEEVQ 102

Query: 1283 ELVAEVNKE-----DKMKSNFKQHRKLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQE 1119
            EL+ + N++     D      KQ +K   GMG  KY ML+RRQ+K+ETEAWE+AAKEYQ+
Sbjct: 103  ELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQD 162

Query: 1118 LLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMM 939
            LL DMCEQKLAPNLPY+KSLFLGW+EPLRDAIA +Q   +     M YAPYF  LPADMM
Sbjct: 163  LLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMM 222

Query: 938  AVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKDP-KSE 762
            AVIT                 RVVQAA QIGEA+E+E RI SF E TKKK+   +  + +
Sbjct: 223  AVITMHKLVGLLMTNAG--EVRVVQAACQIGEAIENEARIRSFFESTKKKNATDNNLEGD 280

Query: 761  SDPV-------IKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLI 603
            S+PV       IKE+ KL+K+VT+LIKKQKL+QVR IVKG  D KPWGQD  VKVGCRLI
Sbjct: 281  SEPVTNDPEKLIKEQDKLKKRVTSLIKKQKLRQVRGIVKGHVDLKPWGQDALVKVGCRLI 340

Query: 602  QLLMETAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKET-HSRRYGVIECDPLVRKGLEKS 426
            QLLMETAYIQPPVDQLGD PPDIRPAFVHTLK+  KE    RRYGVIECDPLVRKGLEK+
Sbjct: 341  QLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKT 400

Query: 425  ARHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEA 246
             RHM+IPYMPMLVPPLNW GY+RG + FLPSYVMRTHGA+QQRE +K T R QLEPVF+A
Sbjct: 401  GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQA 460

Query: 245  LDTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTDDEAEIRXXXXXXX 66
            LDTLG+ KWR+NKR+L +IDR+W+SGG LA LVD+EDVPLPE+PDTDDE EI+       
Sbjct: 461  LDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPDTDDETEIKKWKWKVK 520

Query: 65   XXXKENSERHSQRCDIELKLA 3
               K+NSE+HSQRCDIELKL+
Sbjct: 521  TAKKQNSEKHSQRCDIELKLS 541


>ref|XP_006437832.1| hypothetical protein CICLE_v10030633mg [Citrus clementina]
            gi|557540028|gb|ESR51072.1| hypothetical protein
            CICLE_v10030633mg [Citrus clementina]
          Length = 980

 Score =  601 bits (1549), Expect = e-169
 Identities = 321/561 (57%), Positives = 388/561 (69%), Gaps = 14/561 (2%)
 Frame = -2

Query: 1643 MWRSIAKQAYSKKWKFXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPGF 1464
            MWR++A+Q+ ++ +KF              K+SQ + F ++I  +   T ++   PL GF
Sbjct: 1    MWRNLARQSSTRNFKFSPS-----------KVSQTTNFLKKITSLETQTLLDSSCPLLGF 49

Query: 1463 NRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDGSGVDEIH 1284
             R   LSSQ+ N G+ +   S  PF +     Y+                   SG +E+ 
Sbjct: 50   RRTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESEL-------SGSEEVQ 102

Query: 1283 ELVAEVNKE-----DKMKSNFKQHRKLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQE 1119
            EL+ + N++     D      KQ +K   GMG  KY ML+RRQ+K+ETEAWE+AAKEYQ+
Sbjct: 103  ELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQD 162

Query: 1118 LLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMM 939
            LL DMCEQKLAPNLPY+KSLFLGW+EPLRDAIA +Q   +     M YAPYF  LPADMM
Sbjct: 163  LLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMM 222

Query: 938  AVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKDP-KSE 762
            AVIT                 RVVQAA QIGEA+E+E RI SF E TKKK+   +  + +
Sbjct: 223  AVITMHKLVGLLMTNAG--EVRVVQAACQIGEAIENEARIRSFFESTKKKNATDNNLEGD 280

Query: 761  SDPV-------IKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLI 603
            S+PV       IKE+ KL+K+VT+LIKKQKL+QVR IVKG  D KPWGQD  VKVGCRLI
Sbjct: 281  SEPVTNDPEKLIKEQEKLKKRVTSLIKKQKLRQVRGIVKGHVDLKPWGQDALVKVGCRLI 340

Query: 602  QLLMETAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKET-HSRRYGVIECDPLVRKGLEKS 426
            QLLMETAYIQPPVDQLGD PPDIRPAFVHTLK+  KE    RRYGVIECDPLVRKGLEK+
Sbjct: 341  QLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKT 400

Query: 425  ARHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEA 246
             RHM+IPYMPMLVPPLNW GY+RG + FLPSYVMRTHGA+QQRE +K T R QLEPVF+A
Sbjct: 401  GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQA 460

Query: 245  LDTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTDDEAEIRXXXXXXX 66
            LDTLG+ KWR+NKR+L +IDR+W+SGG LA LVD+EDVPLPE+PDTDDE EI+       
Sbjct: 461  LDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPDTDDETEIKKWKWKVK 520

Query: 65   XXXKENSERHSQRCDIELKLA 3
               K+NSE+HSQRCDIELKL+
Sbjct: 521  TAKKQNSEKHSQRCDIELKLS 541


>ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533046|gb|ESR44229.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 928

 Score =  600 bits (1546), Expect = e-169
 Identities = 326/556 (58%), Positives = 389/556 (69%), Gaps = 9/556 (1%)
 Frame = -2

Query: 1643 MWRSIAKQAYSKKWKFXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPGF 1464
            MWR++AKQA S   K              + ISQDS+  ++++  G    V       G 
Sbjct: 47   MWRNVAKQAISLHLK-----KPFSRAYSFLGISQDSILREKVK-FGCLDMVPRGIHEVGS 100

Query: 1463 NRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDGSGVDEIH 1284
             RIG + + ED  GR S  V  N      F    +GY              D S V+EI 
Sbjct: 101  GRIGEILNHEDYMGRTSFGVLKN----DNF-WCPRGYATVAEAVSSTDVEEDVSIVEEIQ 155

Query: 1283 ELVAEVNKEDKMKSNF---KQHRKLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQELL 1113
            EL+ E+ KE++ +      +  R++  GMG GKY ML+ RQVK+ETEAWE+AA EY+ELL
Sbjct: 156  ELLQEMKKEEQREGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELL 215

Query: 1112 VDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMMAV 933
            +DMCEQKLAPNLPYMKSLFLGW+EPLRDAIA EQE C+  K+++AYAPYF  LPADMMAV
Sbjct: 216  MDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAV 275

Query: 932  ITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKDPKSE--- 762
            IT              G ARVVQAA  IG+A+E EVRIH FLEKTKKK+  K+ + E   
Sbjct: 276  ITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGD 335

Query: 761  -SDPVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQLLMET 585
             S+ V  E+ KLRKKVT LIKKQKL  VR IVKG+DD KPWGQD + KVG R+I+LL +T
Sbjct: 336  ESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQT 395

Query: 584  AYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETH--SRRYGVIECDPLVRKGLEKSARHMV 411
            AYIQ P DQL D PPDI PAF HTL+TV KET   S++YGVIEC+PLV KGLE++ARHMV
Sbjct: 396  AYIQSPADQLVDAPPDIFPAFTHTLRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMV 455

Query: 410  IPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEALDTLG 231
            IPYMPMLVPP+ W GYD+GA+ FLPSYVMRTHGAKQQR+ VKRT +KQLEPVFEALDTLG
Sbjct: 456  IPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLG 515

Query: 230  NAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTDDEAEIRXXXXXXXXXXKE 51
            N KWR+N RVLS++DRIWS GG+LADLVDR DVPLPE+P+T+DEA++R          KE
Sbjct: 516  NTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKE 575

Query: 50   NSERHSQRCDIELKLA 3
            N ERHSQRCDIELKL+
Sbjct: 576  NRERHSQRCDIELKLS 591


>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533045|gb|ESR44228.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 1030

 Score =  600 bits (1546), Expect = e-169
 Identities = 326/556 (58%), Positives = 389/556 (69%), Gaps = 9/556 (1%)
 Frame = -2

Query: 1643 MWRSIAKQAYSKKWKFXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPGF 1464
            MWR++AKQA S   K              + ISQDS+  ++++  G    V       G 
Sbjct: 47   MWRNVAKQAISLHLK-----KPFSRAYSFLGISQDSILREKVK-FGCLDMVPRGIHEVGS 100

Query: 1463 NRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDGSGVDEIH 1284
             RIG + + ED  GR S  V  N      F    +GY              D S V+EI 
Sbjct: 101  GRIGEILNHEDYMGRTSFGVLKN----DNF-WCPRGYATVAEAVSSTDVEEDVSIVEEIQ 155

Query: 1283 ELVAEVNKEDKMKSNF---KQHRKLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQELL 1113
            EL+ E+ KE++ +      +  R++  GMG GKY ML+ RQVK+ETEAWE+AA EY+ELL
Sbjct: 156  ELLQEMKKEEQREGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELL 215

Query: 1112 VDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMMAV 933
            +DMCEQKLAPNLPYMKSLFLGW+EPLRDAIA EQE C+  K+++AYAPYF  LPADMMAV
Sbjct: 216  MDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAV 275

Query: 932  ITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKDPKSE--- 762
            IT              G ARVVQAA  IG+A+E EVRIH FLEKTKKK+  K+ + E   
Sbjct: 276  ITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGD 335

Query: 761  -SDPVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQLLMET 585
             S+ V  E+ KLRKKVT LIKKQKL  VR IVKG+DD KPWGQD + KVG R+I+LL +T
Sbjct: 336  ESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQT 395

Query: 584  AYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETH--SRRYGVIECDPLVRKGLEKSARHMV 411
            AYIQ P DQL D PPDI PAF HTL+TV KET   S++YGVIEC+PLV KGLE++ARHMV
Sbjct: 396  AYIQSPADQLVDAPPDIFPAFTHTLRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMV 455

Query: 410  IPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEALDTLG 231
            IPYMPMLVPP+ W GYD+GA+ FLPSYVMRTHGAKQQR+ VKRT +KQLEPVFEALDTLG
Sbjct: 456  IPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLG 515

Query: 230  NAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTDDEAEIRXXXXXXXXXXKE 51
            N KWR+N RVLS++DRIWS GG+LADLVDR DVPLPE+P+T+DEA++R          KE
Sbjct: 516  NTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKE 575

Query: 50   NSERHSQRCDIELKLA 3
            N ERHSQRCDIELKL+
Sbjct: 576  NRERHSQRCDIELKLS 591