BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia24_contig00008976
         (1302 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007227387.1| hypothetical protein PRUPE_ppb016975mg [Prun...    98   9e-18
ref|XP_007200265.1| hypothetical protein PRUPE_ppa015000mg [Prun...    93   3e-16
ref|XP_007227199.1| hypothetical protein PRUPE_ppa019381mg [Prun...    90   2e-15
emb|CAE04985.3| OSJNBa0057M08.11 [Oryza sativa Japonica Group]         90   2e-15
prf||1510387A retrotransposon del1-46                                  89   5e-15
ref|XP_007027904.1| Uncharacterized protein TCM_022818 [Theobrom...    87   2e-14
gb|AAM00970.1|AC021892_34 Putative retroelement [Oryza sativa Ja...    86   3e-14
gb|AAL59229.1|AF448416_9 gag-pol [Zea mays]                            86   3e-14
ref|XP_006591651.1| PREDICTED: uncharacterized protein LOC102664...    85   6e-14
emb|CAE05986.3| OSJNBa0004L19.11 [Oryza sativa Japonica Group]         84   1e-13
gb|ABA95051.1| retrotransposon protein, putative, Ty3-gypsy subc...    84   2e-13
gb|AAX96590.1| retrotransposon protein, putative, Ty3-gypsy sub-...    84   2e-13
ref|XP_003581701.1| PREDICTED: uncharacterized protein LOC100824...    84   2e-13
ref|XP_003605752.1| Pol polyprotein [Medicago truncatula] gi|355...    83   2e-13
emb|CAE04526.2| OSJNBb0076A11.10 [Oryza sativa Japonica Group]         83   2e-13
gb|ABA94236.1| retrotransposon protein, putative, unclassified [...    83   3e-13
gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexic...    83   3e-13
gb|AAD15321.1| putative reverse transcriptase [Arabidopsis thali...    83   3e-13
gb|ABA98315.1| retrotransposon protein, putative, Ty3-gypsy subc...    82   4e-13
gb|AAM74314.2|AC114474_6 Putative retroelement [Oryza sativa Jap...    82   4e-13

>ref|XP_007227387.1| hypothetical protein PRUPE_ppb016975mg [Prunus persica]
           gi|462424323|gb|EMJ28586.1| hypothetical protein
           PRUPE_ppb016975mg [Prunus persica]
          Length = 650

 Score = 97.8 bits (242), Expect = 9e-18
 Identities = 80/294 (27%), Positives = 124/294 (42%), Gaps = 24/294 (8%)
 Frame = -2

Query: 977 RQMEQSETRSGPTEAEIAEKAAERQLKLSTRMTTLCPHEFTGTEGAVAAQVWLRRIEQCV 798
           RQ+    TR+  T           ++K   R+  L   EF G+     A++W+  +E+  
Sbjct: 49  RQVLSQFTRTVATALRGRRGTESSEIK---RVKELGAKEFLGSTDPAEAELWITDVERIF 105

Query: 797 DALGCSASERIHMTVFRLSGDALSWWDACVRHYGHEQLYAYSWEDFRRLFEERFVPTYET 618
           + L C A +R+ +  F L G+A  WW A  R  G+E   A +WE+F+R+F + F P    
Sbjct: 106 EVLECPAEDRVRLATFLLKGNAYHWWKAVKR--GYENPAAINWEEFQRVFSDPFYPPSYK 163

Query: 617 VKLREQYETLVQGQMTVEEYYRRFEHLSHYAP--TETETARVHRFLRGFCPALQFKIGHM 444
              + ++  L QG M+V EY  +F  LS +AP    TE  R  RF  G    +Q  +   
Sbjct: 164 QAKKSEFLYLKQGSMSVVEYEHKFNELSRFAPELVATEEDRCRRFEEGLWWEIQAVV--- 220

Query: 443 QFDTVLSVVRCASAAEAVTSRLHPPVDLETQRDDHPSYPTV-PTAAPLFAPVTAQVGDSS 267
             +T  ++   A AA  V+ +L   V    +       P+  P+     +  +A  G S 
Sbjct: 221 TANTYPNMRALAQAAARVSRKLGGNVSRRRRDTSGIGGPSQGPSKRGGSSSSSASGGWSG 280

Query: 266 YRQRGHQERKPGSR--------------------KFRGY-CHHCGKKGHIMSQC 168
            R       + GSR                    ++ G  C HCG+ GHI   C
Sbjct: 281 GRGSSSSSGRSGSRSAWTQYSGPQSAASTARAPSRYTGLTCFHCGQVGHIAKDC 334


>ref|XP_007200265.1| hypothetical protein PRUPE_ppa015000mg [Prunus persica]
           gi|462395665|gb|EMJ01464.1| hypothetical protein
           PRUPE_ppa015000mg [Prunus persica]
          Length = 1493

 Score = 92.8 bits (229), Expect = 3e-16
 Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 2/172 (1%)
 Frame = -2

Query: 887 RMTTLCPHEFTGTEGAVAAQVWLRRIEQCVDALGCSASERIHMTVFRLSGDALSWWDACV 708
           R+  L   EF G+     A+ W+  +E+  + L C A +R+ +  F L G+A  WW A  
Sbjct: 76  RVKELGAKEFVGSTDPAEAESWITDVERIFEVLECPAEDRVRLATFLLKGNAYHWWKAVK 135

Query: 707 RHYGHEQLYAYSWEDFRRLFEERFVPTYETVKLREQYETLVQGQMTVEEYYRRFEHLSHY 528
           R  G+E   A +WE+F+R+F E+F P       + ++  L QG M+V EY  +F  LS +
Sbjct: 136 R--GYENPAAINWEEFQRVFSEQFYPPSYRHAKKSEFLYLKQGSMSVMEYEHKFNELSRF 193

Query: 527 AP--TETETARVHRFLRGFCPALQFKIGHMQFDTVLSVVRCASAAEAVTSRL 378
           AP    TE  R  RF  G    +Q  I     +T  ++   A A E V+ +L
Sbjct: 194 APELVATEEDRCRRFEEGLWWEIQAVI---TANTYPNMRALAHAVERVSRKL 242


>ref|XP_007227199.1| hypothetical protein PRUPE_ppa019381mg [Prunus persica]
           gi|462424135|gb|EMJ28398.1| hypothetical protein
           PRUPE_ppa019381mg [Prunus persica]
          Length = 505

 Score = 89.7 bits (221), Expect = 2e-15
 Identities = 73/276 (26%), Positives = 119/276 (43%), Gaps = 26/276 (9%)
 Frame = -2

Query: 887 RMTTLCPHEFTGTEGAVAAQVWLRRIEQCVDALGCSASERIHMTVFRLSGDALSWWDACV 708
           R+  L  +EF G+     A   L  +E+  + L C   +R+ +  F L G+A   W A  
Sbjct: 81  RVKELGANEFHGSADPAEADACLTDVERIFEVLQCPDRDRVRLAAFLLKGNAYHGWKAVR 140

Query: 707 RHYGHEQLYAYSWEDFRRLFEERFVPTYETVKLREQYETLVQGQMTVEEYYRRFEHLSHY 528
           R Y +    A +WE+F+R+F ++F P     + + ++  L QG M+V EY  +F  LS +
Sbjct: 141 RGYANPA--ALTWEEFQRVFFDQFYPHSYKNEKKSEFLHLRQGSMSVLEYEHKFNELSRF 198

Query: 527 AP--TETETARVHRFLRGFCPALQFKIGHMQFDTVLSVVRCASAAEAVTSRLHPPVDLET 354
           AP    TE  R  RF  G    +Q  +    + T+ ++   A AA+ V  +      +  
Sbjct: 199 APELVTTEEDRCTRFEEGLWLDIQAVVTANTYPTMRAL---AQAADRVARKYSLGAGISR 255

Query: 353 QRDDH---------PSYPTVPTAAPLFAPVTAQVGDSSYRQR-----------GHQE--- 243
           +R D          PS     +++   +  +   G SS  +R           G Q    
Sbjct: 256 RRRDSSGFGEPSQGPSKRGGSSSSSAGSEWSGGRGSSSGSRRSGSRPAWSQHSGQQSVAS 315

Query: 242 -RKPGSRKFRGYCHHCGKKGHIMSQCRMLGDTYDPA 138
             K  S+++   CH CG+ GH+   C   G T  P+
Sbjct: 316 TAKDFSQQYNATCHGCGQTGHLRRDCPQRGQTSGPS 351


>emb|CAE04985.3| OSJNBa0057M08.11 [Oryza sativa Japonica Group]
          Length = 1664

 Score = 89.7 bits (221), Expect = 2e-15
 Identities = 74/303 (24%), Positives = 118/303 (38%), Gaps = 10/303 (3%)
 Frame = -2

Query: 1046 PGTSSASATGLDYASMVAAYRAFRQMEQSETRSGPTEAEIAEKAAERQLKLSTRMTTLCP 867
            P  +    T    A  V  Y+   ++   E  + P +  +        L++        P
Sbjct: 537  PQKARVRLTARKRALFVPRYQLAPKVRVVEKEATPADPPVVNNKLAEFLRVR-------P 589

Query: 866  HEFTGTEGAVAAQVWLRRIEQCVDALGCSASERIHMTVFRLSGDALSWWDACVRHY--GH 693
              F+ T   V A  WL  IE+ +D L C+  E++     +L G A  WWD    H+    
Sbjct: 590  PVFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWD----HFRLNR 645

Query: 692  EQLYAYSWEDFRRLFEERFVPTYETVKLREQYETLVQGQMTVEEYYRRFEHLSHYAPTE- 516
                  SW +F   F +  +P+      ++++ +L QG  TV EY   F  L+ YAP E 
Sbjct: 646  TTPEPISWLEFNAAFRKTHIPSGVVSLKKKEFRSLTQGSRTVTEYLHEFNRLARYAPEEV 705

Query: 515  -TETARVHRFLRGFCPALQFKIGHMQFDTVLSVVRCASAAEAVTSRLHPP------VDLE 357
             T+  R  RFL+G    L + +    +     +V  A   E   +R+            +
Sbjct: 706  RTDEERQERFLKGLNDELSYPLMTGDYHDFQKLVDKAIRQEDKYNRMEQKKRRIAHFKAQ 765

Query: 356  TQRDDHPSYPTVPTAAPLFAPVTAQVGDSSYRQRGHQERKPGSRKFRGYCHHCGKKGHIM 177
                  P     P + P  AP       +S  Q+   +R+ GS+   G C +CG  GH  
Sbjct: 766  QGNSQRPRLTLGPQSMPQGAPRPV----ASPTQQQPAKREQGSKP--GVCFNCGDPGHYA 819

Query: 176  SQC 168
             +C
Sbjct: 820  DKC 822


>prf||1510387A retrotransposon del1-46
          Length = 1443

 Score = 88.6 bits (218), Expect = 5e-15
 Identities = 71/286 (24%), Positives = 123/286 (43%), Gaps = 3/286 (1%)
 Frame = -2

Query: 938 EAEIAEKAAERQLKLSTRMTTLCPHEFTGTEGAVAAQVWLRRIEQCVDALGCSASERIHM 759
           +AE + +  E + +L      L P  F G    + A  W+R + + +D LG +  +++ +
Sbjct: 42  QAEQSARQGESRPRLIKEFKGLNPPIFKGDPDPLEAHRWIRHVTKILDTLGVTDEQKVIL 101

Query: 758 TVFRLSGDALSWWDACVRHYGHEQLYAYSWEDFRRLFEERFVPTYETVK-LREQYETLVQ 582
             F+L G+A  WWDA VR    +      W++F  +F E+F P  +TV+   E++ TLVQ
Sbjct: 102 ASFQLQGEAEFWWDAKVRS-REDDTTQIKWDEFVEVFTEKFFP--DTVRDDLERFMTLVQ 158

Query: 581 GQMTVEEYYRRFEHLSHYAPTETE--TARVHRFLRGFCPALQFKIGHMQFDTVLSVVRCA 408
           G +TV +Y  +FE LS YAP + +    +V RF +G   ++  ++          V+  A
Sbjct: 159 GSLTVAQYEAKFEELSRYAPYQVDINIRKVKRFEQGLKLSITKQLSSHLIKDYREVITRA 218

Query: 407 SAAEAVTSRLHPPVDLETQRDDHPSYPTVPTAAPLFAPVTAQVGDSSYRQRGHQERKPGS 228
            + E    R    +   ++++   ++P                    +RQ   + + P  
Sbjct: 219 LSVEKREQREAQIMAKRSKKNRGHNHP--------------YTRKEPHRQSNDKSQCPNP 264

Query: 227 RKFRGYCHHCGKKGHIMSQCRMLGDTYDPAVQTEDIQSPQGQLEQP 90
                 C+  G+ GH  S    L     P       + PQ Q   P
Sbjct: 265 LSPGKVCYSYGQPGHFKSNYLTL--MAPPQQHPPPYRPPQNQPRPP 308


>ref|XP_007027904.1| Uncharacterized protein TCM_022818 [Theobroma cacao]
           gi|508716509|gb|EOY08406.1| Uncharacterized protein
           TCM_022818 [Theobroma cacao]
          Length = 248

 Score = 87.0 bits (214), Expect = 2e-14
 Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 5/197 (2%)
 Frame = -2

Query: 959 ETRSGPTEAEIAEKAAER-QLKLSTR-MTTLCPHEFTGTEGAVAAQVWLRRIEQCVDALG 786
           E+ S   +A+   +  ER  L++S      L P  F+G++     QV+L ++E+   ALG
Sbjct: 21  ESLSSQGQADCQYREVERGHLEISLPDFLKLKPPSFSGSDALEKPQVFLDKMEKICKALG 80

Query: 785 CSASERIHMTVFRLSGDALSWWDACVRHYGHEQLYAYSWEDFRRLFEERFVPTYETVKLR 606
           CS+   + +  FRL   A  W+ +  +    +     +W +F   F +RF+P        
Sbjct: 81  CSSVRSVELAAFRLEDVAQEWYSSLCKGRPTDAA-PLAWSEFSAAFLDRFLPLSVCNART 139

Query: 605 EQYETLVQ-GQMTVEEYYRRFEHLSHYAP--TETETARVHRFLRGFCPALQFKIGHMQFD 435
            ++ETLVQ   MTV EY  +F  LS YAP    TE  ++ RF+ G    L   +    F 
Sbjct: 140 REFETLVQTSSMTVSEYDIKFTQLSRYAPYLVSTEEMKIQRFVDGLVEPLFRVVASQDFT 199

Query: 434 TVLSVVRCASAAEAVTS 384
           T  +VV CA   E  TS
Sbjct: 200 TYSAVVDCAQHIEMRTS 216


>gb|AAM00970.1|AC021892_34 Putative retroelement [Oryza sativa Japonica Group]
           gi|78708151|gb|ABB47126.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1425

 Score = 86.3 bits (212), Expect = 3e-14
 Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 8/242 (3%)
 Frame = -2

Query: 869 PHEFTGTEGAVAAQVWLRRIEQCVDALGCSASERIHMTVFRLSGDALSWWD--ACVRHYG 696
           P  F+ T   + A  WL  IE+ ++ L C+  E++     +L G A +WWD     R  G
Sbjct: 100 PPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPG 159

Query: 695 HEQLYAYSWEDFRRLFEERFVPTYETVKLREQYETLVQGQMTVEEYYRRFEHLSHYAPTE 516
            E     +W +F R F++  VP     + + ++  L QG  TV EY   F  L+ YAP +
Sbjct: 160 TE----VTWAEFCRSFKKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAPED 215

Query: 515 --TETARVHRFLRGFCPALQFKI---GHMQFDTVL-SVVRCASAAEAVTSRLHPPVDLET 354
             T+  +  +FL G    L  ++    +  F+ ++   +R       +  + + P     
Sbjct: 216 VRTDAEKQEKFLAGLDDELTNQLISGDYADFERLVDKAIRQEDQRNKMDRKSNFPQGASG 275

Query: 353 QRDDHPSYPTVPTAAPLFAPVTAQVGDSSYRQRGHQERKPGSRKFRGYCHHCGKKGHIMS 174
            ++ H   P    AAP      AQ G S+  ++     KPGS      C +CG+ GH   
Sbjct: 276 SQNHHGGQPN-RGAAPRPPMAPAQSGPSAQAKK-ETGAKPGS------CFNCGELGHFAD 327

Query: 173 QC 168
           +C
Sbjct: 328 KC 329


>gb|AAL59229.1|AF448416_9 gag-pol [Zea mays]
          Length = 1470

 Score = 86.3 bits (212), Expect = 3e-14
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 2/204 (0%)
 Frame = -2

Query: 983 AFRQMEQSETRSGPTEAEIAEKAAERQLKLSTRMTTLCPHEFTGTEGAVAAQVWLRRIEQ 804
           A +Q++Q++    P + + A  A ++     +      P  F+     + A  WL+ I +
Sbjct: 10  AVQQLQQNQQIQQPQQQQYAPPARDKHRDFMSHH----PPTFSHAVDPLDADDWLKVIGK 65

Query: 803 CVDALGCSASERIHMTVFRLSGDALSWWDACVRHYGHEQLYAYSWEDFRRLFEERFVPTY 624
            +D   C+  E++     RL G A  WWDA      H      +W++F+  F    +P+ 
Sbjct: 66  KLDITQCNDREKVLYASGRLEGAASDWWDAFTA--AHPNADTITWQEFQENFRSHHIPS- 122

Query: 623 ETVKLREQYETLVQGQMTVEEYYRRFEHLSHYAPTETET--ARVHRFLRGFCPALQFKIG 450
             +KL++++ +L QG M+V EY  RF  LS YAP E +T   R  RFL G    L +++ 
Sbjct: 123 GIMKLKKEFLSLTQGNMSVSEYRDRFTQLSRYAPEEVDTDEKRQERFLEGLIGPLNYQLQ 182

Query: 449 HMQFDTVLSVVRCASAAEAVTSRL 378
              F    +++  A   E+    L
Sbjct: 183 SHTFPNFQTLLNKAIGLESKRKEL 206


>ref|XP_006591651.1| PREDICTED: uncharacterized protein LOC102664352 [Glycine max]
          Length = 297

 Score = 85.1 bits (209), Expect = 6e-14
 Identities = 64/255 (25%), Positives = 106/255 (41%), Gaps = 17/255 (6%)
 Frame = -2

Query: 869 PHEFTGTEGAVAAQVWLRRIEQCVDALGCSASERIHMTVFRLSGDALSWWD---ACVRHY 699
           P  F G      AQ W+R IE+    + C   +++    + L  +A  WW+    C+   
Sbjct: 45  PPSFNGGYNPNGAQNWIREIEKIFRVMACPERQKVAFGTYTLVEEAEYWWENTRQCLEAE 104

Query: 698 GHEQLYAYSWEDFRRLFEERFVPTYETVKLREQYETLVQGQMTVEEYYRRFEHL----SH 531
           G +     +W+ F+R+F E++ P     K   ++  L QG M V EY  +FE L     H
Sbjct: 105 GQD----VTWDVFKRVFLEKYFPEDVRNKKEMEFLELKQGSMIVAEYAAKFEELVRYFPH 160

Query: 530 YAPTETETARVHRFLRGFCPALQFKI---GHMQFDTVLSVVRCASAAEAVTSRLHPPVDL 360
           Y   + E+++  +FL G  P ++  +   G  QF  ++++ R         +  +     
Sbjct: 161 YQGRDGESSKCVKFLNGLRPEVKQAVNYQGVRQFPLLVNMCRIWDEDSRDRAAYYRSTGP 220

Query: 359 ETQRDDHPSYPTVPTAAPLFAPVTAQVGDSSYRQR-------GHQERKPGSRKFRGYCHH 201
              + + P +   P + P       Q G+    QR       G    KP +      C+ 
Sbjct: 221 MRNKKNGPQHRGKPYSIP-----PKQYGNRHDNQRTVARGFAGGSGSKPNTFSTHIICYK 275

Query: 200 CGKKGHIMSQCRMLG 156
           CGK GHI S C  +G
Sbjct: 276 CGKPGHISSNCPDIG 290


>emb|CAE05986.3| OSJNBa0004L19.11 [Oryza sativa Japonica Group]
          Length = 449

 Score = 84.0 bits (206), Expect = 1e-13
 Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 4/206 (1%)
 Frame = -2

Query: 983 AFRQMEQSETRSGPTEAEIAEKAAERQLKLSTRMTTLCPHEFTGTEGAVAAQVWLRRIEQ 804
           AF+ ++     +G T  ++      +Q KLS  + T  P  F      + A  WLR +E+
Sbjct: 49  AFQLLQNRNNPAGATNVQVP--TVPQQCKLSEFLKT-GPPTFAMAVDPMEASDWLRTVEK 105

Query: 803 CVDALGCSASERIHMTVFRLSGDALSWWDA--CVRHYGHEQLYAYSWEDFRRLFEERFVP 630
            +  + C+  ER+     +L G A  WWD+    R  GH      +W +F  +F+   VP
Sbjct: 106 KLGLIQCTDQERVGFATHQLVGPASEWWDSYEASRPEGH----TITWNEFSSVFKRSHVP 161

Query: 629 TYETVKLREQYETLVQGQMTVEEYYRRFEHLSHYAP--TETETARVHRFLRGFCPALQFK 456
           T      + ++  L QG +TV EY   F  L+HYAP   ET+  +  +FL+G    L  +
Sbjct: 162 TGMITLRKREFRYLKQGDLTVTEYLHEFYRLAHYAPEDVETDEDKQEKFLQGLKDELAVQ 221

Query: 455 IGHMQFDTVLSVVRCASAAEAVTSRL 378
           +    ++    +V  A   E+  +R+
Sbjct: 222 LLLEDYEDFEKLVDKAMQLESEHNRM 247


>gb|ABA95051.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 449

 Score = 83.6 bits (205), Expect = 2e-13
 Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 4/206 (1%)
 Frame = -2

Query: 983 AFRQMEQSETRSGPTEAEIAEKAAERQLKLSTRMTTLCPHEFTGTEGAVAAQVWLRRIEQ 804
           AF+ ++     +G T  ++     ++Q KLS  + T  P  F      + A  WLR +E+
Sbjct: 49  AFQLLQNRNNPAGATNVQVP--TVQQQCKLSEFLKT-GPPTFAMAVDPMEASDWLRTVER 105

Query: 803 CVDALGCSASERIHMTVFRLSGDALSWWD--ACVRHYGHEQLYAYSWEDFRRLFEERFVP 630
            +  + C+  ER+     +L G A  WWD     R  GH      +W +F  +F    VP
Sbjct: 106 KLGLIQCTDQERVGFATHQLVGPASEWWDNYEASRPEGH----TITWNEFSSVFRRSHVP 161

Query: 629 TYETVKLREQYETLVQGQMTVEEYYRRFEHLSHYAP--TETETARVHRFLRGFCPALQFK 456
           T      + ++  L QG +TV EY   F  L+HYAP   ET+  +  +FL+G    L  +
Sbjct: 162 TGMITLRKREFRYLKQGDLTVTEYLHEFYRLAHYAPEDVETDEDKQEKFLQGLKDELAVQ 221

Query: 455 IGHMQFDTVLSVVRCASAAEAVTSRL 378
           +    ++    +V  A   E+  +R+
Sbjct: 222 LLLGDYEDFEKLVDKAMQLESEHNRM 247


>gb|AAX96590.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
            Japonica Group] gi|77550403|gb|ABA93200.1|
            retrotransposon protein, putative, Ty3-gypsy subclass
            [Oryza sativa Japonica Group]
          Length = 1640

 Score = 83.6 bits (205), Expect = 2e-13
 Identities = 64/267 (23%), Positives = 104/267 (38%), Gaps = 33/267 (12%)
 Frame = -2

Query: 869  PHEFTGTEGAVAAQVWLRRIEQCVDALGCSASERIHMTVFRLSGDALSWWDACVRHYGHE 690
            P  F+ T   V A +WL  +E+ +D + C+  E++     +L G A  WWD    H+   
Sbjct: 384  PATFSSTTNPVEAGIWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWD----HFRQN 439

Query: 689  QLYA--YSWEDFRRLFEERFVPTYETVKLREQYETLVQGQMTVEEYYRRFEHLSHYAPTE 516
            +      +W++F   F++  +P       + ++  L QG  +V EY   F HL+ YAP +
Sbjct: 440  RAEGDPITWQEFTAAFKKTHIPLGVVALKKREFRALNQGSHSVTEYLHDFNHLARYAPED 499

Query: 515  --TETARVHRFLRGFCPALQFKIGHMQFDTVLSVVRCASAAEAVTSRLHPPVDLETQ--- 351
              T+  R  +FL G    L + +    +     +V  A   E   +R+        Q   
Sbjct: 500  VLTDEERQEKFLEGLNDELSYALMSTDYQDFQQLVDKAIRQEDKYNRMEQKKRRAAQFKA 559

Query: 350  ---RDDHPSYPTVPTAAPL----FAPVT---AQVGDSSYRQRGHQERKPGSRKFR----- 216
                   P     P AAP     F+ VT    Q  +++   R +  R   +R        
Sbjct: 560  QQGSSQRPRIALGPQAAPYPQGGFSSVTRPQRQFYNNNTGNRSNDNRNVVARPVAAPTQN 619

Query: 215  -----------GYCHHCGKKGHIMSQC 168
                       G C +CG  GH   +C
Sbjct: 620  QPIRKEQGSKLGVCFNCGDPGHYADKC 646


>ref|XP_003581701.1| PREDICTED: uncharacterized protein LOC100824572, partial
           [Brachypodium distachyon]
          Length = 319

 Score = 83.6 bits (205), Expect = 2e-13
 Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 2/203 (0%)
 Frame = -2

Query: 890 TRMTTLCPHEFTGTEGAVAAQVWLRRIEQCVDALGCSASERIHMTVFRLSGDALSWWDAC 711
           TR   L P  F+ +   + A  WLR I++ +  + C+  ER+     +L G A +WWD  
Sbjct: 73  TRFLRLHPPPFSSSAEPIEADDWLRTIQKKLVTIQCTDQERVLYASHQLEGAAAAWWDTF 132

Query: 710 VRHYGHEQLYAYSWEDFRRLFEERFVPTYETVKLREQYETLVQGQMTVEEYYRRFEHLSH 531
              +G +++   +W+DF   F +  VP      +R+++  L QG MTV+EY  RF  L+ 
Sbjct: 133 KFGFGGDEI---TWDDFVEGFHKAHVPAGSMGLMRKEFRALRQGSMTVQEYLERFTQLAR 189

Query: 530 YAPTET--ETARVHRFLRGFCPALQFKIGHMQFDTVLSVVRCASAAEAVTSRLHPPVDLE 357
           YAP +   +  +   FL G    L  ++    F +  ++V  A   E    ++       
Sbjct: 190 YAPDDVADDEDKQELFLDGLNDELSVQLVSSDFQSFQNLVDKAIRLEGKQKQVE-----N 244

Query: 356 TQRDDHPSYPTVPTAAPLFAPVT 288
            +R D P      T+  + A  T
Sbjct: 245 RKRKDDPMRRNATTSTRISASST 267


>ref|XP_003605752.1| Pol polyprotein [Medicago truncatula] gi|355506807|gb|AES87949.1|
           Pol polyprotein [Medicago truncatula]
          Length = 745

 Score = 83.2 bits (204), Expect = 2e-13
 Identities = 68/249 (27%), Positives = 102/249 (40%), Gaps = 15/249 (6%)
 Frame = -2

Query: 869 PHEFTGTEGAVAAQVWLRRIEQCVDALGCSASERIHMTVFRLSGDALSWWDACVRHYGHE 690
           P  F G      AQ WL+ IE+    + C+  +++     +L+ +A  WW A +   G E
Sbjct: 45  PPTFKGRCDPDGAQTWLKEIERIFRVMQCTEDQKVRFGTHQLAEEADDWWVALLPTLGQE 104

Query: 689 QLYAYSWEDFRRLFEERFVPTYETVKLREQYETLVQGQMTVEEYYRRFEHLS----HYAP 522
                +W  FRR F  R+ P     K   ++  L QG M+V EY  +F  LS    HY  
Sbjct: 105 GA-VVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAKFVELSKFYPHYTA 163

Query: 521 TETETARVHRFLRGFCPALQFKIGHMQFDTVLSVVRCASAAEAVTSRLHPPVDLETQRDD 342
              E +R  +F  G  P ++  IG+ Q      +V      E  T + H  V  E +   
Sbjct: 164 ENAEFSRCIKFENGLRPDIKRAIGYQQLRVFQDLVNSCRIYEEDT-KAHYKVVNERKGKG 222

Query: 341 HPSYPTVPTAAP----------LFAPVTAQVGDSSYRQRGHQERKPGS-RKFRGYCHHCG 195
             S P  P +AP          +  P      +  Y   G +  K  +  +    C  CG
Sbjct: 223 QQSRPK-PYSAPADKGKQKMVDVRRPKKKDAAEIVYFNCGEKGHKSNACPEEIKKCVRCG 281

Query: 194 KKGHIMSQC 168
           KKGH+++ C
Sbjct: 282 KKGHVVADC 290


>emb|CAE04526.2| OSJNBb0076A11.10 [Oryza sativa Japonica Group]
          Length = 449

 Score = 83.2 bits (204), Expect = 2e-13
 Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 4/206 (1%)
 Frame = -2

Query: 983 AFRQMEQSETRSGPTEAEIAEKAAERQLKLSTRMTTLCPHEFTGTEGAVAAQVWLRRIEQ 804
           AF+ ++     +G T  ++     ++Q KLS  + T  P  F      + A  WLR +E+
Sbjct: 49  AFQLLQNRNNPAGATNVQVP--TVQQQCKLSEFLKT-GPPTFAMAVDPMEASDWLRTVEK 105

Query: 803 CVDALGCSASERIHMTVFRLSGDALSWWDA--CVRHYGHEQLYAYSWEDFRRLFEERFVP 630
            +  + C+  ER+     +L G A  WWD+    R  GH      +W +F  +F+   VP
Sbjct: 106 KLGLIQCTDQERVGFATHQLVGPASEWWDSYEASRPEGH----TITWNEFSSVFKRSHVP 161

Query: 629 TYETVKLREQYETLVQGQMTVEEYYRRFEHLSHYAP--TETETARVHRFLRGFCPALQFK 456
                  + ++  L QG +TV EY   F  L+HYAP   ET+  +  +FL+G    L  +
Sbjct: 162 AGMITLRKREFRYLKQGDLTVAEYLHEFYRLAHYAPEDVETDEDKQEKFLQGLKDELAVQ 221

Query: 455 IGHMQFDTVLSVVRCASAAEAVTSRL 378
           +    ++    +V  A   E+  +R+
Sbjct: 222 LLLEDYEDFEKLVDKAMQLESEHNRM 247


>gb|ABA94236.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 383

 Score = 82.8 bits (203), Expect = 3e-13
 Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 4/206 (1%)
 Frame = -2

Query: 983 AFRQMEQSETRSGPTEAEIAEKAAERQLKLSTRMTTLCPHEFTGTEGAVAAQVWLRRIEQ 804
           AF+ ++     +G T  ++     ++Q KLS  + T  P  F      + A  WLR +E+
Sbjct: 49  AFQLLQNWNNPAGATNVQVP--TVQQQCKLSEFLKTE-PPTFAIAVDPMEASDWLRTVEK 105

Query: 803 CVDALGCSASERIHMTVFRLSGDALSWWDA--CVRHYGHEQLYAYSWEDFRRLFEERFVP 630
            +  + C+  ER+     +L G A  WWD+    R  GH      +W++F  +F+   VP
Sbjct: 106 KLGLIQCTDQERVGFATHQLVGPASEWWDSYEASRPEGH----TITWDEFSSVFKRSHVP 161

Query: 629 TYETVKLREQYETLVQGQMTVEEYYRRFEHLSHYAP--TETETARVHRFLRGFCPALQFK 456
                  + ++  L QG +TV EY   F  L+HYAP   ET+  +  +FL+G    L  +
Sbjct: 162 VGMITLRKREFRYLKQGDLTVTEYLHEFYRLAHYAPEDVETDEDKQEKFLQGLKDELAVQ 221

Query: 455 IGHMQFDTVLSVVRCASAAEAVTSRL 378
           +    ++    +V  A   E+  +R+
Sbjct: 222 LLLEDYEDFEKLVDKAMQLESEHNRM 247


>gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexicana]
          Length = 1604

 Score = 82.8 bits (203), Expect = 3e-13
 Identities = 57/234 (24%), Positives = 104/234 (44%), Gaps = 2/234 (0%)
 Frame = -2

Query: 1091 GLEDLPPTARHSRTAPGTSSASATGLDYASMVAAYRAFRQMEQSETRSGPTEAEIAEKAA 912
            G +D  P  +     P  S      +   ++ A  +    ++Q + +  P + ++ +   
Sbjct: 98   GQQDEAPQQQQLPPPPPMSIEQMFLMQTQAVQAIGQTLAAIQQQQQQQAPPQPQMPQMPR 157

Query: 911  ERQLKLSTRMTTLCPHEFTGTEGAVAAQVWLRRIEQCVDALGCSASERIHMTVFRLSGDA 732
            +++ +         P  F  +   + A+ WLR +E+ +    C   E++      L G A
Sbjct: 158  DKRAEFMRGH----PPTFAHSSDPMDAEDWLRTVERELHTAQCDDREKVLYGPRLLRGAA 213

Query: 731  LSWWDACVRHYGHEQLYAYSWEDFRRLFEERFVPTYETVKLREQYETLVQGQMTVEEYYR 552
             SWW++ +  + +      +WE+FR  F +  VP       +E++  L QG  +V EY  
Sbjct: 214  QSWWESYLATHANPD--TITWEEFRGSFRQYHVPAGLMTLKKEEFLALKQGSSSVSEYRD 271

Query: 551  RFEHLSHYAPTE--TETARVHRFLRGFCPALQFKIGHMQFDTVLSVVRCASAAE 396
            RF  LS YAP +  T+  R +RFLRG    LQ+++ +  F T   ++  A   E
Sbjct: 272  RFLQLSRYAPEDVNTDAKRQYRFLRGLVDPLQYQLMNHTFPTFQHLIDRAIMTE 325


>gb|AAD15321.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|7270688|emb|CAB77850.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 839

 Score = 82.8 bits (203), Expect = 3e-13
 Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 14/231 (6%)
 Frame = -2

Query: 1046 PGTSSASATGLDYASMVAAYRAFRQMEQSETRSGPTEAEIAEKAAERQ------------ 903
            PG   A+A G     +  A   FRQ+ +      P +A +A +  E Q            
Sbjct: 83   PGVMGAAAGGAQVPEVGFA-GLFRQLLERLPGVVPVQAPVAPRVVEVQQRAAVAEEVPSY 141

Query: 902  LKLSTRMTTLCPHEFTGTEGAVAAQVWLRRIEQCVDALGCSASERIHMTVFRLSGDALSW 723
            L++  ++  +    F+G      A  W  ++E+   +  C A  R+ +TV  L GDA  W
Sbjct: 142  LRMMKQLQRIGTEYFSGGTSPEEADSWRSQVERNFGSSRCPAEYRVDLTVHFLEGDAHLW 201

Query: 722  WDACVRHYGHEQLYAYSWEDFRRLFEERFVPTYETVKLREQYETLVQGQMTVEEYYRRFE 543
            W +         +   SW DF   F  ++ P     ++  ++  L QG  +V EY R+F 
Sbjct: 202  WRSVTARRRQADM---SWADFMAEFNAKYFPREALDRMEARFLELTQGVRSVREYDRKFN 258

Query: 542  HLSHYA--PTETETARVHRFLRGFCPALQFKIGHMQFDTVLSVVRCASAAE 396
             L  YA    E + A++ RFLRG  P L+ +    Q+ T  ++V  A+  E
Sbjct: 259  RLLVYAGRGMEDDQAQMRRFLRGLRPNLRVRCRVSQYATKAALVETAAEVE 309


>gb|ABA98315.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 449

 Score = 82.4 bits (202), Expect = 4e-13
 Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 4/206 (1%)
 Frame = -2

Query: 983 AFRQMEQSETRSGPTEAEIAEKAAERQLKLSTRMTTLCPHEFTGTEGAVAAQVWLRRIEQ 804
           AF+ ++     +G T  ++     ++Q KLS  + T  P  F      + A  WLR +E+
Sbjct: 49  AFQLLQNWNNPAGATNVQVP--TVQQQCKLSEFLKTE-PPTFAIAVDPMEASDWLRTVEK 105

Query: 803 CVDALGCSASERIHMTVFRLSGDALSWWDA--CVRHYGHEQLYAYSWEDFRRLFEERFVP 630
            +  + C+  ER+     +L G A  WWD+    R  GH      +W +F  +F+   VP
Sbjct: 106 KLGLIQCTDQERVGFATHQLVGPASEWWDSYEASRPEGH----TITWNEFSSVFKRSHVP 161

Query: 629 TYETVKLREQYETLVQGQMTVEEYYRRFEHLSHYAP--TETETARVHRFLRGFCPALQFK 456
                  + ++  L QG +TV EY   F  L+HYAP   ET+  +  +FL+G    L  +
Sbjct: 162 AGMITLRKREFRYLKQGDLTVTEYLHEFYRLAHYAPEDVETDEDKQEKFLQGLKDELAVQ 221

Query: 455 IGHMQFDTVLSVVRCASAAEAVTSRL 378
           +    ++    +V  A   E+  +R+
Sbjct: 222 LLLEDYENFEKLVDKAMQLESEHNRM 247


>gb|AAM74314.2|AC114474_6 Putative retroelement [Oryza sativa Japonica Group]
           gi|78708436|gb|ABB47411.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1223

 Score = 82.4 bits (202), Expect = 4e-13
 Identities = 60/238 (25%), Positives = 97/238 (40%), Gaps = 4/238 (1%)
 Frame = -2

Query: 869 PHEFTGTEGAVAAQVWLRRIEQCVDALGCSASERIHMTVFRLSGDALSWWDACVRHYGHE 690
           P  F+ T   V A  WL  IE+ +D + C+  E++     +L G A  WWD    H+   
Sbjct: 138 PPTFSSTTNPVEAGDWLHAIEKKLDLIQCTEQEKVSFASHQLHGPAAEWWD----HFRQN 193

Query: 689 QLYA--YSWEDFRRLFEERFVPTYETVKLREQYETLVQGQMTVEEYYRRFEHLSHYAPTE 516
           +      +W +F   F++  +P+      + ++  L QG  +V EY   F  L+ YAP +
Sbjct: 194 RAVGEPITWREFTAAFKKTHIPSGVVALKKREFRALNQGSCSVIEYLHDFNRLARYAPED 253

Query: 515 --TETARVHRFLRGFCPALQFKIGHMQFDTVLSVVRCASAAEAVTSRLHPPVDLETQRDD 342
             T+  R  +FL G    L + +  M++     +V  A   E   +R+    + + +R  
Sbjct: 254 VRTDEERQEKFLEGLNDELSYALMAMEYRDFQQLVDKAIRQEDKYNRM----EQKKRRAA 309

Query: 341 HPSYPTVPTAAPLFAPVTAQVGDSSYRQRGHQERKPGSRKFRGYCHHCGKKGHIMSQC 168
           H      PT               +   R  Q  KP      G C +CG  GH   +C
Sbjct: 310 HFKAQQAPT--------------QNQPVRKEQGSKP------GVCFNCGHPGHYADKC 347