BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia24_contig00008812
         (1889 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007042502.1| DNA-directed RNA polymerase family protein [...   333   1e-88
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   328   4e-87
ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [A...   320   1e-84
emb|CBI40277.3| unnamed protein product [Vitis vinifera]              320   1e-84
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   320   1e-84
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   320   1e-84
ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citr...   319   2e-84
ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II su...   315   6e-83
ref|XP_007157771.1| hypothetical protein PHAVU_002G097400g [Phas...   314   1e-82
ref|XP_007201816.1| hypothetical protein PRUPE_ppa008812mg [Prun...   313   2e-82
ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II su...   312   3e-82
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, ...   311   7e-82
ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polype...   307   9e-81
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, ...   307   1e-80
ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, ...   306   2e-80
ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II su...   306   2e-80
ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-...   306   3e-80
gb|AFK41039.1| unknown [Medicago truncatula]                          306   3e-80
ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II su...   301   5e-79
ref|XP_001765827.1| predicted protein [Physcomitrella patens] gi...   301   5e-79

>ref|XP_007042502.1| DNA-directed RNA polymerase family protein [Theobroma cacao]
            gi|508706437|gb|EOX98333.1| DNA-directed RNA polymerase
            family protein [Theobroma cacao]
          Length = 318

 Score =  333 bits (855), Expect = 1e-88
 Identities = 170/191 (89%), Positives = 180/191 (94%)
 Frame = +2

Query: 1220 DHCATKEKNSDSASYDASEQRGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPAATVTFM 1399
            DH       +DSA YD+SEQRGIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAATVTFM
Sbjct: 129  DHTVVPVDFTDSAGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 188

Query: 1400 YEPEIHINEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEVIKKAE 1579
            YEPEIHINED+METLTLEEK+++VESSPT+VFDIDPNTQQVVVVDPEAYTYDDEV+KKAE
Sbjct: 189  YEPEIHINEDMMETLTLEEKQSFVESSPTRVFDIDPNTQQVVVVDPEAYTYDDEVLKKAE 248

Query: 1580 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTVEGADDQ 1759
            AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE+LK KLDAVRLS+DTVE ADDQ
Sbjct: 249  AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVE-ADDQ 307

Query: 1760 FGELGAHMRGG 1792
            FGELGAHMRGG
Sbjct: 308  FGELGAHMRGG 318


>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 318

 Score =  328 bits (842), Expect = 4e-87
 Identities = 168/191 (87%), Positives = 178/191 (93%)
 Frame = +2

Query: 1220 DHCATKEKNSDSASYDASEQRGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPAATVTFM 1399
            DH       SDS+ YD+SEQRGIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAATVTFM
Sbjct: 129  DHTVVPVDFSDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 188

Query: 1400 YEPEIHINEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEVIKKAE 1579
            YEP+IHINEDLME+L+LEEK++WVESSPTKVFDIDPNTQQVVVVDPEAYTYD+EVIKKAE
Sbjct: 189  YEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTYDEEVIKKAE 248

Query: 1580 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTVEGADDQ 1759
            +MGKPGLV I AKEDSFIFTVESTGAIKASQLVLNAIEILK KLDAVRLS+DTVE ADDQ
Sbjct: 249  SMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSEDTVE-ADDQ 307

Query: 1760 FGELGAHMRGG 1792
            FGELGAHMRGG
Sbjct: 308  FGELGAHMRGG 318


>ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [Amborella trichopoda]
            gi|548856809|gb|ERN14637.1| hypothetical protein
            AMTR_s00038p00194050 [Amborella trichopoda]
          Length = 324

 Score =  320 bits (821), Expect = 1e-84
 Identities = 162/184 (88%), Positives = 172/184 (93%)
 Frame = +2

Query: 1241 KNSDSASYDASEQRGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPAATVTFMYEPEIHI 1420
            +  DS  +DASEQRGIIIVKLRRGQEL LRAIARKGIGKDHAKWSP ATVTFMYEPEIHI
Sbjct: 140  RGMDSNGFDASEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPGATVTFMYEPEIHI 199

Query: 1421 NEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEVIKKAEAMGKPGL 1600
            N+DLMETL+L+EKR WVESSPT+VFDIDPNT QVVVVDPEAYTYDDEVIKKAEAMGKPGL
Sbjct: 200  NDDLMETLSLDEKREWVESSPTRVFDIDPNTHQVVVVDPEAYTYDDEVIKKAEAMGKPGL 259

Query: 1601 VEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTVEGADDQFGELGAH 1780
            VEIYA+EDSFIFTVESTGAIKASQLV+NAIE+LK KLDAVRLS DT EG D+QFGELGAH
Sbjct: 260  VEIYAREDSFIFTVESTGAIKASQLVINAIEVLKQKLDAVRLSLDTEEG-DEQFGELGAH 318

Query: 1781 MRGG 1792
            MRGG
Sbjct: 319  MRGG 322


>emb|CBI40277.3| unnamed protein product [Vitis vinifera]
          Length = 206

 Score =  320 bits (821), Expect = 1e-84
 Identities = 163/196 (83%), Positives = 178/196 (90%)
 Frame = +2

Query: 1205 DDLPRDHCATKEKNSDSASYDASEQRGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPAA 1384
            D +  DH       SDS+ YD+++++GIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAA
Sbjct: 12   DLISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 71

Query: 1385 TVTFMYEPEIHINEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEV 1564
            TVTFMYEPEIHINEDLME+LTLEEK +WVESSPTKVFDID ++QQVVV D EAYTYDDEV
Sbjct: 72   TVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEV 131

Query: 1565 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTVE 1744
            +KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI++LK KLDAVRLS+DTVE
Sbjct: 132  LKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVE 191

Query: 1745 GADDQFGELGAHMRGG 1792
             ADDQFGELGAHMRGG
Sbjct: 192  -ADDQFGELGAHMRGG 206


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
            vinifera]
          Length = 318

 Score =  320 bits (821), Expect = 1e-84
 Identities = 163/196 (83%), Positives = 178/196 (90%)
 Frame = +2

Query: 1205 DDLPRDHCATKEKNSDSASYDASEQRGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPAA 1384
            D +  DH       SDS+ YD+++++GIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAA
Sbjct: 124  DLISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 183

Query: 1385 TVTFMYEPEIHINEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEV 1564
            TVTFMYEPEIHINEDLME+LTLEEK +WVESSPTKVFDID ++QQVVV D EAYTYDDEV
Sbjct: 184  TVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEV 243

Query: 1565 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTVE 1744
            +KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI++LK KLDAVRLS+DTVE
Sbjct: 244  LKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVE 303

Query: 1745 GADDQFGELGAHMRGG 1792
             ADDQFGELGAHMRGG
Sbjct: 304  -ADDQFGELGAHMRGG 318


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  320 bits (821), Expect = 1e-84
 Identities = 163/196 (83%), Positives = 178/196 (90%)
 Frame = +2

Query: 1205 DDLPRDHCATKEKNSDSASYDASEQRGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPAA 1384
            D +  DH       SDS+ YD+++++GIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAA
Sbjct: 124  DLISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 183

Query: 1385 TVTFMYEPEIHINEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEV 1564
            TVTFMYEPEIHINEDLME+LTLEEK +WVESSPTKVFDID ++QQVVV D EAYTYDDEV
Sbjct: 184  TVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEV 243

Query: 1565 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTVE 1744
            +KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI++LK KLDAVRLS+DTVE
Sbjct: 244  LKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVE 303

Query: 1745 GADDQFGELGAHMRGG 1792
             ADDQFGELGAHMRGG
Sbjct: 304  -ADDQFGELGAHMRGG 318


>ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citrus clementina]
            gi|568867393|ref|XP_006487022.1| PREDICTED: DNA-directed
            RNA polymerases II, IV and V subunit 3-like [Citrus
            sinensis] gi|557524889|gb|ESR36195.1| hypothetical
            protein CICLE_v10028849mg [Citrus clementina]
          Length = 319

 Score =  319 bits (818), Expect = 2e-84
 Identities = 166/192 (86%), Positives = 175/192 (91%), Gaps = 1/192 (0%)
 Frame = +2

Query: 1220 DHCATKEKNSDSASYDASEQ-RGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPAATVTF 1396
            DH        D A YD+++Q RGIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAATVTF
Sbjct: 129  DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188

Query: 1397 MYEPEIHINEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEVIKKA 1576
            MYEPEIHINEDLME+L+LEEK++WVESSPTKVFDIDPNT QV VVD EAYTYDDEVIKKA
Sbjct: 189  MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248

Query: 1577 EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTVEGADD 1756
            EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE+LK KLDAVRLS+DTVE ADD
Sbjct: 249  EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVE-ADD 307

Query: 1757 QFGELGAHMRGG 1792
            QFGELGAHMRGG
Sbjct: 308  QFGELGAHMRGG 319


>ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Fragaria vesca subsp. vesca]
          Length = 318

 Score =  315 bits (806), Expect = 6e-83
 Identities = 161/194 (82%), Positives = 176/194 (90%)
 Frame = +2

Query: 1211 LPRDHCATKEKNSDSASYDASEQRGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPAATV 1390
            L  DH       SD++ Y+ASEQRGIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAATV
Sbjct: 126  LSSDHTVVPVDFSDASGYEASEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 185

Query: 1391 TFMYEPEIHINEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEVIK 1570
            TFMYEP+I INE++M+TL+LE+K  WV+SSPTKVF+IDPNT +VVVVDPEAYTYDDEVIK
Sbjct: 186  TFMYEPDIRINEEMMDTLSLEDKAAWVDSSPTKVFEIDPNTGKVVVVDPEAYTYDDEVIK 245

Query: 1571 KAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTVEGA 1750
            KAEAMGKPGLV+I AKEDSFIFTVESTGAIKASQL+LNAIEILK KLDAVRLS+DTVE A
Sbjct: 246  KAEAMGKPGLVDITAKEDSFIFTVESTGAIKASQLLLNAIEILKQKLDAVRLSEDTVE-A 304

Query: 1751 DDQFGELGAHMRGG 1792
            DDQFGELGAHMRGG
Sbjct: 305  DDQFGELGAHMRGG 318


>ref|XP_007157771.1| hypothetical protein PHAVU_002G097400g [Phaseolus vulgaris]
            gi|561031186|gb|ESW29765.1| hypothetical protein
            PHAVU_002G097400g [Phaseolus vulgaris]
          Length = 318

 Score =  314 bits (804), Expect = 1e-82
 Identities = 160/182 (87%), Positives = 172/182 (94%)
 Frame = +2

Query: 1247 SDSASYDASEQRGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE 1426
            SD AS D+SE RG+IIVKLRRGQEL LRAIARKGIGKDHAKWSPAATVTFMYEPEIH+NE
Sbjct: 138  SDPASTDSSESRGVIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHLNE 197

Query: 1427 DLMETLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEVIKKAEAMGKPGLVE 1606
            DLMETLTLEEKR WV+SSPT+VF+IDP TQQV+VVD EAY+YDDEVIKKAEAMGKPGLVE
Sbjct: 198  DLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDSEAYSYDDEVIKKAEAMGKPGLVE 257

Query: 1607 IYAKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTVEGADDQFGELGAHMR 1786
            I A++DSFIFTVESTGAIK+SQLVLNAIEILK KLDAVRLS+DTVE ADDQFGELGAHMR
Sbjct: 258  IIARQDSFIFTVESTGAIKSSQLVLNAIEILKQKLDAVRLSEDTVE-ADDQFGELGAHMR 316

Query: 1787 GG 1792
            GG
Sbjct: 317  GG 318


>ref|XP_007201816.1| hypothetical protein PRUPE_ppa008812mg [Prunus persica]
            gi|462397216|gb|EMJ03015.1| hypothetical protein
            PRUPE_ppa008812mg [Prunus persica]
          Length = 318

 Score =  313 bits (801), Expect = 2e-82
 Identities = 160/196 (81%), Positives = 175/196 (89%)
 Frame = +2

Query: 1205 DDLPRDHCATKEKNSDSASYDASEQRGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPAA 1384
            D L  DH       SDSA  ++SEQ+GIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAA
Sbjct: 124  DLLSSDHTVVPVDFSDSAGMESSEQKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 183

Query: 1385 TVTFMYEPEIHINEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEV 1564
            TVTFMYEP+I INE+LM+ LTL+EK+ WVESSPTKVFD DP T++V+VVDPEAYTYDDEV
Sbjct: 184  TVTFMYEPDIRINEELMDMLTLDEKKAWVESSPTKVFDFDPKTEKVMVVDPEAYTYDDEV 243

Query: 1565 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTVE 1744
            IKKAEAMGKPGLV+I AKEDSFIFTVESTGA+KASQL+LNAIEILK KLDAVRLS+DTVE
Sbjct: 244  IKKAEAMGKPGLVDIIAKEDSFIFTVESTGAVKASQLLLNAIEILKQKLDAVRLSEDTVE 303

Query: 1745 GADDQFGELGAHMRGG 1792
             ADDQFGELGAHMRGG
Sbjct: 304  -ADDQFGELGAHMRGG 318


>ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like [Cicer
            arietinum]
          Length = 319

 Score =  312 bits (800), Expect = 3e-82
 Identities = 158/183 (86%), Positives = 174/183 (95%)
 Frame = +2

Query: 1244 NSDSASYDASEQRGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 1423
            ++D +S ++S+ RGIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAATVTFMYEP+IHIN
Sbjct: 138  SADPSSLESSDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHIN 197

Query: 1424 EDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEVIKKAEAMGKPGLV 1603
            EDLME+LTLEEKR WV+SSPT+VFDIDP TQQV+VVDPEAY+YDDEVIKKAEAMGKPGLV
Sbjct: 198  EDLMESLTLEEKREWVDSSPTRVFDIDPVTQQVMVVDPEAYSYDDEVIKKAEAMGKPGLV 257

Query: 1604 EIYAKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTVEGADDQFGELGAHM 1783
            EI AK+DSFIFTVESTGA+KASQL+LNAIEILK KLDAVRLS+DTVE ADDQFGELGAHM
Sbjct: 258  EITAKQDSFIFTVESTGAVKASQLLLNAIEILKQKLDAVRLSEDTVE-ADDQFGELGAHM 316

Query: 1784 RGG 1792
            RGG
Sbjct: 317  RGG 319


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
            [Glycine max]
          Length = 319

 Score =  311 bits (797), Expect = 7e-82
 Identities = 158/182 (86%), Positives = 170/182 (93%)
 Frame = +2

Query: 1247 SDSASYDASEQRGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE 1426
            SD ++ D+   RGIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE
Sbjct: 139  SDPSATDSDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE 198

Query: 1427 DLMETLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEVIKKAEAMGKPGLVE 1606
            DLMETLTLEEKR WV+SSPT+VF+IDP TQQV+VVD EAYTYDDEV+KKAEAMGKPGLVE
Sbjct: 199  DLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDDEVLKKAEAMGKPGLVE 258

Query: 1607 IYAKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTVEGADDQFGELGAHMR 1786
            I A++DSFIFTVESTGA+KASQLVLNAIEILK KLDAVRLS+DTVE ADDQFGELGAHMR
Sbjct: 259  IIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDTVE-ADDQFGELGAHMR 317

Query: 1787 GG 1792
            GG
Sbjct: 318  GG 319


>ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polypeptide B family protein
            [Populus trichocarpa] gi|550331423|gb|EEE87820.2|
            DNA-directed RNA polymerase II 36 kDa polypeptide B
            family protein [Populus trichocarpa]
          Length = 323

 Score =  307 bits (787), Expect = 9e-81
 Identities = 164/196 (83%), Positives = 172/196 (87%), Gaps = 5/196 (2%)
 Frame = +2

Query: 1220 DHCATKEKNSDSAS----YDASE-QRGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPAA 1384
            DH       SD +     +D +E QRGIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAA
Sbjct: 129  DHAVIPVDFSDPSDANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 188

Query: 1385 TVTFMYEPEIHINEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEV 1564
            TVTFMYEPEIHINEDLMETLTLEEK +W+ESSPTKVFDID  TQQVVVVDPEAYTYDDEV
Sbjct: 189  TVTFMYEPEIHINEDLMETLTLEEKLSWIESSPTKVFDIDKVTQQVVVVDPEAYTYDDEV 248

Query: 1565 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTVE 1744
            IKKAEAMGK GL++I AKEDSFIFTVESTGA+KASQLVLNAIEILK KLDAVRLSDDTVE
Sbjct: 249  IKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSDDTVE 308

Query: 1745 GADDQFGELGAHMRGG 1792
             ADDQFGELG HMRGG
Sbjct: 309  -ADDQFGELGVHMRGG 323


>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
            [Glycine max]
          Length = 320

 Score =  307 bits (786), Expect = 1e-80
 Identities = 157/180 (87%), Positives = 167/180 (92%)
 Frame = +2

Query: 1253 SASYDASEQRGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL 1432
            SA+      RGIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL
Sbjct: 142  SATDSPDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL 201

Query: 1433 METLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEVIKKAEAMGKPGLVEIY 1612
            METLTLEEKR WV+SSPT+VF+IDP TQQV+VVD EAYTYDDEV+KKAEAMGKPGLVEI 
Sbjct: 202  METLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDDEVLKKAEAMGKPGLVEII 261

Query: 1613 AKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTVEGADDQFGELGAHMRGG 1792
            A++DSFIFTVESTGA+KASQLVLNAIEILK KLDAVRLS+DTVE ADDQFGELGAHMRGG
Sbjct: 262  ARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDTVE-ADDQFGELGAHMRGG 320


>ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
            [Solanum tuberosum]
          Length = 319

 Score =  306 bits (784), Expect = 2e-80
 Identities = 159/197 (80%), Positives = 174/197 (88%), Gaps = 1/197 (0%)
 Frame = +2

Query: 1205 DDLPRDHCATKEKNSD-SASYDASEQRGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPA 1381
            D L  DH       SD S+S+D +  +GIIIVKLRRGQEL LRAIARKGIGKDHAKWSPA
Sbjct: 124  DLLSSDHTVVPVDYSDTSSSFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183

Query: 1382 ATVTFMYEPEIHINEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDE 1561
            ATVTFMYEPEI+INED+ME+LTLEEK   VESSPTKVF IDP  +QV+VVDPEAYTYDDE
Sbjct: 184  ATVTFMYEPEIYINEDMMESLTLEEKTELVESSPTKVFGIDPENKQVIVVDPEAYTYDDE 243

Query: 1562 VIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTV 1741
            V+KKAEAMGKPG+VEI+AKEDSFIFTVE+TGA+KASQLVLNAIE+LK KLDAVRLSDDTV
Sbjct: 244  VLKKAEAMGKPGVVEIHAKEDSFIFTVETTGAVKASQLVLNAIEVLKQKLDAVRLSDDTV 303

Query: 1742 EGADDQFGELGAHMRGG 1792
            E ADDQFGELGAHMRGG
Sbjct: 304  E-ADDQFGELGAHMRGG 319


>ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Solanum lycopersicum]
          Length = 319

 Score =  306 bits (784), Expect = 2e-80
 Identities = 159/197 (80%), Positives = 174/197 (88%), Gaps = 1/197 (0%)
 Frame = +2

Query: 1205 DDLPRDHCATKEKNSD-SASYDASEQRGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPA 1381
            D L  DH       SD S+S+D +  +GIIIVKLRRGQEL LRAIARKGIGKDHAKWSPA
Sbjct: 124  DLLSSDHTVVPVDYSDASSSFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183

Query: 1382 ATVTFMYEPEIHINEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDE 1561
            ATVTFMYEPEI+INED+ME+LTLEEK   VESSPTKVF IDP  +QV+VVDPEAYTYDDE
Sbjct: 184  ATVTFMYEPEIYINEDMMESLTLEEKTELVESSPTKVFGIDPENKQVIVVDPEAYTYDDE 243

Query: 1562 VIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTV 1741
            V+KKAEAMGKPG+VEI+AKEDSFIFTVE+TGA+KASQLVLNAIE+LK KLDAVRLSDDTV
Sbjct: 244  VLKKAEAMGKPGVVEIHAKEDSFIFTVETTGAVKASQLVLNAIEVLKQKLDAVRLSDDTV 303

Query: 1742 EGADDQFGELGAHMRGG 1792
            E ADDQFGELGAHMRGG
Sbjct: 304  E-ADDQFGELGAHMRGG 319


>ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
            gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation
            [Medicago truncatula] gi|355508950|gb|AES90092.1|
            DNA-directed RNA polymerase II subunit RPB3-A [Medicago
            truncatula]
          Length = 318

 Score =  306 bits (783), Expect = 3e-80
 Identities = 157/196 (80%), Positives = 173/196 (88%)
 Frame = +2

Query: 1205 DDLPRDHCATKEKNSDSASYDASEQRGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPAA 1384
            D +  DH  T        +   S+ RGIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAA
Sbjct: 124  DLISSDHTVTPVDVPGGDASIESDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 183

Query: 1385 TVTFMYEPEIHINEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEV 1564
            TVTFMYEP+IHINEDLME+LTLEEK+ WV+SSPT+VFDIDP TQQV+VVDPEAY+YDDEV
Sbjct: 184  TVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQVMVVDPEAYSYDDEV 243

Query: 1565 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTVE 1744
            IKKAEAMGKPGL+EI AK+DSFIFTVESTGA+KASQL+LN+IEILK KLDAVRLS+DTVE
Sbjct: 244  IKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLSEDTVE 303

Query: 1745 GADDQFGELGAHMRGG 1792
             ADDQFGELGAHMRGG
Sbjct: 304  -ADDQFGELGAHMRGG 318


>gb|AFK41039.1| unknown [Medicago truncatula]
          Length = 318

 Score =  306 bits (783), Expect = 3e-80
 Identities = 157/196 (80%), Positives = 173/196 (88%)
 Frame = +2

Query: 1205 DDLPRDHCATKEKNSDSASYDASEQRGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPAA 1384
            D +  DH  T        +   S+ RGIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAA
Sbjct: 124  DLISSDHTVTPVDVPGGDASIESDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 183

Query: 1385 TVTFMYEPEIHINEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEV 1564
            TVTFMYEP+IHINEDLME+LTLEEK+ WV+SSPT+VFDIDP TQQV+VVDPEAY+YDDEV
Sbjct: 184  TVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQVMVVDPEAYSYDDEV 243

Query: 1565 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTVE 1744
            IKKAEAMGKPGL+EI AK+DSFIFTVESTGA+KASQL+LN+IEILK KLDAVRLS+DTVE
Sbjct: 244  IKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLSEDTVE 303

Query: 1745 GADDQFGELGAHMRGG 1792
             ADDQFGELGAHMRGG
Sbjct: 304  -ADDQFGELGAHMRGG 318


>ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Cucumis sativus]
          Length = 320

 Score =  301 bits (772), Expect = 5e-79
 Identities = 158/193 (81%), Positives = 170/193 (88%), Gaps = 2/193 (1%)
 Frame = +2

Query: 1220 DHCATKEKNSDSASY--DASEQRGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPAATVT 1393
            DH       SDSA+   +A + +GIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAATVT
Sbjct: 129  DHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 188

Query: 1394 FMYEPEIHINEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEVIKK 1573
            FMYEP IHINEDLMETLTLEEKR WVES PT+VF++D  T QV+VVDPEAYTYDDEVIKK
Sbjct: 189  FMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYTYDDEVIKK 248

Query: 1574 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTVEGAD 1753
            AEAMGK GLV+I A+EDSFIFTVESTGAIKASQL+LNAI+ILK KLDAVRLSDDTVE AD
Sbjct: 249  AEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVE-AD 307

Query: 1754 DQFGELGAHMRGG 1792
            DQFGELGAHMRGG
Sbjct: 308  DQFGELGAHMRGG 320


>ref|XP_001765827.1| predicted protein [Physcomitrella patens] gi|162683004|gb|EDQ69418.1|
            predicted protein [Physcomitrella patens]
          Length = 324

 Score =  301 bits (772), Expect = 5e-79
 Identities = 150/182 (82%), Positives = 169/182 (92%)
 Frame = +2

Query: 1247 SDSASYDASEQRGIIIVKLRRGQELSLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE 1426
            +D   +++++ RGI+IVKLR+GQEL LRAIARKGIGKDHAKWSPAATVTF YEPEIHINE
Sbjct: 142  ADMGGFESNDTRGILIVKLRKGQELKLRAIARKGIGKDHAKWSPAATVTFQYEPEIHINE 201

Query: 1427 DLMETLTLEEKRNWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEVIKKAEAMGKPGLVE 1606
             LMETLTLEEK+ W++SSPTKVF++DP +QQVVVVDPEAYTYD+EV+KKAEAMGKPGLVE
Sbjct: 202  ALMETLTLEEKQEWIDSSPTKVFELDPVSQQVVVVDPEAYTYDEEVLKKAEAMGKPGLVE 261

Query: 1607 IYAKEDSFIFTVESTGAIKASQLVLNAIEILKTKLDAVRLSDDTVEGADDQFGELGAHMR 1786
            IY+KEDSFIFTVESTGAIKASQ+ LNAIEILK+KLDAVRLS DT E ADDQFGELGAHMR
Sbjct: 262  IYSKEDSFIFTVESTGAIKASQMFLNAIEILKSKLDAVRLSFDT-EEADDQFGELGAHMR 320

Query: 1787 GG 1792
            GG
Sbjct: 321  GG 322