BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia24_contig00008389
         (4310 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III s...  1872   0.0  
ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citr...  1853   0.0  
ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III s...  1852   0.0  
ref|XP_007010799.1| DNA-directed RNA polymerase isoform 1 [Theob...  1842   0.0  
ref|XP_007010801.1| DNA-directed RNA polymerase isoform 3 [Theob...  1829   0.0  
ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put...  1801   0.0  
ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III s...  1783   0.0  
ref|XP_004308665.1| PREDICTED: DNA-directed RNA polymerase III s...  1766   0.0  
ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III s...  1764   0.0  
ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III s...  1762   0.0  
ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutr...  1756   0.0  
ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arab...  1754   0.0  
ref|XP_006494574.1| PREDICTED: DNA-directed RNA polymerase III s...  1748   0.0  
ref|XP_006279912.1| hypothetical protein CARUB_v10025768mg [Caps...  1747   0.0  
ref|NP_199327.4| DNA-directed RNA polymerase RPC2 [Arabidopsis t...  1732   0.0  
ref|XP_007010805.1| DNA-directed RNA polymerase isoform 7 [Theob...  1719   0.0  
ref|XP_006583557.1| PREDICTED: DNA-directed RNA polymerase III s...  1717   0.0  
dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis...  1706   0.0  
ref|XP_007152964.1| hypothetical protein PHAVU_004G175000g [Phas...  1702   0.0  
ref|XP_004510587.1| PREDICTED: DNA-directed RNA polymerase III s...  1699   0.0  

>ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera]
          Length = 1142

 Score = 1872 bits (4848), Expect = 0.0
 Identities = 923/1133 (81%), Positives = 1017/1133 (89%), Gaps = 9/1133 (0%)
 Frame = -3

Query: 3885 AQPFKPPPAVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSIY 3706
            A P K   AV+KF L+PEFLKVRGLVKQHLDSFNYFV   IKKIVRAN RI S VD SIY
Sbjct: 12   ADPVKQ--AVDKFPLLPEFLKVRGLVKQHLDSFNYFVKTDIKKIVRANDRIVSSVDPSIY 69

Query: 3705 LRFKDIRIGEPSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNV 3526
            LRFKD+RIGEPS+  DG+ EKLNPH CRLSD+TY APILV+IEYI GSH+QKT   KN+V
Sbjct: 70   LRFKDVRIGEPSITVDGISEKLNPHTCRLSDMTYAAPILVNIEYITGSHVQKTRVEKNDV 129

Query: 3525 VIGRLPIMLRSCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIII 3346
            VIGR+PIMLRSC CVLY+KDEA LA+LGECPLDPGGYF++KGTEKV+LIQEQLSKNRIII
Sbjct: 130  VIGRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNRIII 189

Query: 3345 DTDKKGRVNASVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQE 3166
            DTDKKG +NASV SSTE+ KSKT I +EKEKI++QLN F +K +PIM+VMKAMGME+DQE
Sbjct: 190  DTDKKGNINASVTSSTESTKSKTVIVMEKEKIWLQLNQFTSK-IPIMIVMKAMGMESDQE 248

Query: 3165 VVQMVGRDPRFSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKA 2986
            VVQMVGR+PR+S LLLPS+EEC +HGI +QQ+ALEFL+RK+ K P Y  S EK+ R M  
Sbjct: 249  VVQMVGRNPRYSALLLPSMEECASHGIYTQQQALEFLERKVKKLPFYNPSLEKEGRGMAI 308

Query: 2985 LREVFIGHVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSL 2806
            LR+ FI +V V QNN RPKCLY AVM+RRMM+AI+NKD MDDKDYVGNKRLELSGQ++SL
Sbjct: 309  LRDTFIANVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYVGNKRLELSGQLISL 368

Query: 2805 LFEDLFKTMIGEVIKTMDAILAKPSRSSRLDPSQ---LIARNNITAGLERTLSTGQFDIK 2635
            LFEDLFKTMI EV KT+DAILAKPSRSSR D SQ    I R++IT GLERTLSTG +D+K
Sbjct: 369  LFEDLFKTMISEVKKTIDAILAKPSRSSRFDFSQCLRFIVRDSITVGLERTLSTGNWDVK 428

Query: 2634 RFRLHRSGMTQPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 2455
            RFR+HR GM+Q + RLS+IGSLGHMTKI PQFEKSRKVSGPRALQPSQWGMLCPCDTPEG
Sbjct: 429  RFRMHRKGMSQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 488

Query: 2454 EACGLVKNLALMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILG 2275
            EACGLVKNLALMTHVTTDEEE PL+S+CY LGVEDLELLSGEELHTPNSFLI+FNGLILG
Sbjct: 489  EACGLVKNLALMTHVTTDEEESPLISLCYSLGVEDLELLSGEELHTPNSFLIIFNGLILG 548

Query: 2274 KHRRPQRFANALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 2095
            KHRRPQRFANALRKLRRAGKIGEFVSV+VNEKQ CVYIASDGGRVCRP+VIADKG SRIK
Sbjct: 549  KHRRPQRFANALRKLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPVVIADKGKSRIK 608

Query: 2094 EHHMRELLDGVRTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGV 1915
            EHHM+EL+DGVRTFDDFLR+GLIEYLDVNEENNALIALYE +A  +TTHIEIEP TILGV
Sbjct: 609  EHHMKELIDGVRTFDDFLRDGLIEYLDVNEENNALIALYEADAKPETTHIEIEPFTILGV 668

Query: 1914 IAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIEL 1735
             AGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIEL
Sbjct: 669  CAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIEL 728

Query: 1734 VGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTS 1555
            VGYDKLGAGQNATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIVMKK   VN++YENN S
Sbjct: 729  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKFSAVNQRYENNAS 788

Query: 1554 DRILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRGV---ECQ 1393
            DRI+RP +   D ++MQILDDDG+AAPGEII+ NDIY+NK+SP+ T+  ++  V   +  
Sbjct: 789  DRIVRPLKVGHDAERMQILDDDGLAAPGEIIKPNDIYINKESPIITKGPLISPVGLPDSA 848

Query: 1392 YKSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCG 1213
            YK + Q FKGPEGE  VVDRVALCSD+N+NLCI F+IRHTRRPEVGDKFSSRHGQKGVCG
Sbjct: 849  YKPSRQTFKGPEGEASVVDRVALCSDKNSNLCIKFLIRHTRRPEVGDKFSSRHGQKGVCG 908

Query: 1212 TIIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPS 1033
            TIIQQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS GRFHYGSAFGEPS
Sbjct: 909  TIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPS 968

Query: 1032 GHADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQAR 853
            GHADKVE ISK+LV HGFSYSGKDFIYSGITGCPLQ YIFMGPIYYQKLKHMVLDKM AR
Sbjct: 969  GHADKVETISKTLVKHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1028

Query: 852  GNGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKC 673
            G+GP V++TRQPT GRA+ GG+RVGEMERDCLIAYGASMLIFERLM+SSDPFEVQVCR C
Sbjct: 1029 GSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVC 1088

Query: 672  GLLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 514
            GLLGYYN+KLK GICS+CKNG+N+ST+KLPYACKLL QELQ+MN+VPRLKL E
Sbjct: 1089 GLLGYYNHKLKIGICSTCKNGDNISTMKLPYACKLLFQELQAMNVVPRLKLTE 1141


>ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citrus clementina]
            gi|557534507|gb|ESR45625.1| hypothetical protein
            CICLE_v10000078mg [Citrus clementina]
          Length = 1149

 Score = 1853 bits (4799), Expect = 0.0
 Identities = 910/1149 (79%), Positives = 1022/1149 (88%), Gaps = 6/1149 (0%)
 Frame = -3

Query: 3942 VKEKGKNKFPPSSLKHSDIAQPFKPPPAVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGI 3763
            V+E  K++  P   K   +A P K    V+KFQL+PEFLKVRGLVKQHLDSFNYFVN GI
Sbjct: 6    VEESPKDEQLPDKQK---LAAPVKS--VVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 60

Query: 3762 KKIVRANQRIESRVDKSIYLRFKDIRIGEPSVVADGVEEKLNPHLCRLSDITYGAPILVD 3583
            +KIVRAN RI S +D SI+LRFKD+RIG+PS+  DGV EKLNPH+CRLSD+TY APILV+
Sbjct: 61   RKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVN 120

Query: 3582 IEYIHGSHIQKTTAHKNNVVIGRLPIMLRSCFCVLYQKDEAALAKLGECPLDPGGYFIIK 3403
            IEY+ GSH +KTT  KN+VVIGR+PIMLRSC CVLY KDEA LA+LGECPLDPGGYFIIK
Sbjct: 121  IEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180

Query: 3402 GTEKVLLIQEQLSKNRIIIDTDKKGRVNASVMSSTETVKSKTNIFIEKEKIYVQLNIFGN 3223
            GTEKVLLIQEQLSKNR+IIDTDKKG +NASV SSTETVKSKT I +EK K+Y+ LN F  
Sbjct: 181  GTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVK 240

Query: 3222 KGVPIMVVMKAMGMENDQEVVQMVGRDPRFSKLLLPSIEECRAHGIDSQQKALEFLDRKI 3043
            K +PIMVVMKAMGME+DQEVVQMVGRDPR+S LLLPSIEEC    I +Q+KALE+L+ K+
Sbjct: 241  K-IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKV 299

Query: 3042 SKGPAYGGSSEKDNRVMKALREVFIGHVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMD 2863
             +       ++++ R    LR+VF+ +V V+ NN RPKC Y AVM+RRM+EA++NKD MD
Sbjct: 300  KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359

Query: 2862 DKDYVGNKRLELSGQMVSLLFEDLFKTMIGEVIKTMDAILAKPSRSSRLDPSQLIARNNI 2683
            DKDYVGNKRLELSGQ+VSLLFEDLFKTMI EV KT+D IL+KPSRSSR D SQ I R++I
Sbjct: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI 419

Query: 2682 TAGLERTLSTGQFDIKRFRLHRSGMTQPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRAL 2503
            T GLERTLSTG FD+KRF++HR GMTQ L RLSFIG+LGHMT++ PQFEKSRKVSGPRAL
Sbjct: 420  TVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479

Query: 2502 QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEEL 2323
            QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPL+S+CYCLGVEDLELLSGEEL
Sbjct: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539

Query: 2322 HTPNSFLIVFNGLILGKHRRPQRFANALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGR 2143
            H PNSFL++FNGLILGKHRRP+ FA+ +RKLRRAGKIGEFVSV+VNEKQRCVYIASDGGR
Sbjct: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGR 599

Query: 2142 VCRPLVIADKGISRIKEHHMRELLDGVRTFDDFLREGLIEYLDVNEENNALIALYEGEAT 1963
            VCRPLVIADKGISRIKEHHM+EL DGVR+FDDFLREGLIEYLDVNEENNALIALYEG+AT
Sbjct: 600  VCRPLVIADKGISRIKEHHMKELSDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDAT 659

Query: 1962 RDTTHIEIEPLTILGVIAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYL 1783
             DTTHIEIEP TILGVIAGLIP+PHHNQSPRNTYQCAMGKQAMGNIA+NQLCRMDSLLYL
Sbjct: 660  PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYL 719

Query: 1782 LVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIV 1603
            LVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIV
Sbjct: 720  LVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV 779

Query: 1602 MKKMKVVNEKYENNTSDRILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPV 1432
            +KK   +N+KY N+TSDRILRP R    +++MQILDDDG+AAPGEII+ ND+Y+NK+SP+
Sbjct: 780  VKKYTAINQKYANSTSDRILRPDRTGPGSERMQILDDDGLAAPGEIIKPNDVYINKESPL 839

Query: 1431 NTRDTVVR---GVECQYKSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPE 1261
             TR +++      + +Y+S  Q +KGP+GETCVVDRVALCSD+N +LCI F+IRHTRRPE
Sbjct: 840  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 899

Query: 1260 VGDKFSSRHGQKGVCGTIIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 1081
            +GDKFSSRHGQKGVCGTI+QQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLGGKAG
Sbjct: 900  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 959

Query: 1080 VSNGRFHYGSAFGEPSGHADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPI 901
            VS GRFHYGSAFGEPSGHAD VE IS++LV HGFSY+GKD IYSGITGCPLQ YIFMGPI
Sbjct: 960  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1019

Query: 900  YYQKLKHMVLDKMQARGNGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFER 721
            YYQKLKHMVLDKM ARG+GP V++TRQPT GRA+ GG+RVGEMERDCLIAYGASMLIFER
Sbjct: 1020 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1079

Query: 720  LMLSSDPFEVQVCRKCGLLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMN 541
            LM+SSDPFEVQVCR CGLLGYYN+KLKAGICS+CKNG N+S++KLPYACKLLIQELQSMN
Sbjct: 1080 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGNNISSMKLPYACKLLIQELQSMN 1139

Query: 540  IVPRLKLVE 514
            IVPRLKL E
Sbjct: 1140 IVPRLKLAE 1148


>ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Citrus sinensis] gi|568883651|ref|XP_006494573.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Citrus sinensis]
          Length = 1149

 Score = 1852 bits (4797), Expect = 0.0
 Identities = 905/1131 (80%), Positives = 1015/1131 (89%), Gaps = 6/1131 (0%)
 Frame = -3

Query: 3888 IAQPFKPPPAVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSI 3709
            +A P K    V+KFQL+PEFLKVRGLVKQHLDSFNYFVN GI+KIVRAN RI S +D SI
Sbjct: 21   LAAPVKS--VVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78

Query: 3708 YLRFKDIRIGEPSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNN 3529
            +LRFKD+RIG+PS+  DGV EKLNPH+CRLSD+TY APILV+IEY+ GSH +KTT  KN+
Sbjct: 79   FLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND 138

Query: 3528 VVIGRLPIMLRSCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRII 3349
            VVIGR+PIMLRSC CVLY KDEA LA+LGECPLDPGGYFIIKGTEKVLLIQEQLSKNR+I
Sbjct: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198

Query: 3348 IDTDKKGRVNASVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQ 3169
            IDTDKKG +NASV SSTETVKSKT I +EK K+Y+ LN F  K +PIMVVMKAMG+E+DQ
Sbjct: 199  IDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK-IPIMVVMKAMGIESDQ 257

Query: 3168 EVVQMVGRDPRFSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMK 2989
            EVVQMVGRDPR+S LLLPSIEEC    I +Q+KALE+L+ K+ +       ++++ R   
Sbjct: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFS 317

Query: 2988 ALREVFIGHVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVS 2809
             LR+VF+ +V V+ NN RPKC Y AVM+RRM+EA++NKD MDDKDYVGNKRLELSGQ+VS
Sbjct: 318  ILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVS 377

Query: 2808 LLFEDLFKTMIGEVIKTMDAILAKPSRSSRLDPSQLIARNNITAGLERTLSTGQFDIKRF 2629
            LLFEDLFKTMI EV KT+D IL+KPSRSSR D SQ I R++IT GLERTLSTG FD+KRF
Sbjct: 378  LLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRF 437

Query: 2628 RLHRSGMTQPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 2449
            ++HR GMTQ L RLSFIG+LGHMT++ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA
Sbjct: 438  KMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 497

Query: 2448 CGLVKNLALMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKH 2269
            CGLVKNLALMTHVTTDEEEGPL+S+CYCLGVEDLELLSGEELH PNSFL++FNGLILGKH
Sbjct: 498  CGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKH 557

Query: 2268 RRPQRFANALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH 2089
            RRP+ FA+ +RKLRRAGKIGEFVSV+VNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH
Sbjct: 558  RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH 617

Query: 2088 HMRELLDGVRTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGVIA 1909
            HM+ELLDGVR+FDDFLREGLIEYLDVNEENNALIALYEG+AT DTTHIEIEP TILGVIA
Sbjct: 618  HMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIA 677

Query: 1908 GLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 1729
            GLIP+PHHNQSPRNTYQCAMGKQAMGNIA+NQLCRMDSLLYLLVYPQRPLLTTRTIELVG
Sbjct: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737

Query: 1728 YDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTSDR 1549
            YDKLGAGQNATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIV+KK   +N+KY N+TSDR
Sbjct: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797

Query: 1548 ILRPQRDN---DKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVR---GVECQYK 1387
            ILRP R     ++MQILDDDG+AAPGEII+ ND+Y+NK+SP+ TR +++      + +Y+
Sbjct: 798  ILRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYR 857

Query: 1386 STFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGTI 1207
            S  Q +KGP+GETCVVDRVALCSD+N +LCI F+IRHTRRPE+GDKFSSRHGQKGVCGTI
Sbjct: 858  SARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTI 917

Query: 1206 IQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSGH 1027
            +QQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS GRFHYGSAFGEPSGH
Sbjct: 918  VQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGH 977

Query: 1026 ADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARGN 847
            AD VE IS++LV HGFSY+GKD IYSGITGCPLQ YIFMGPIYYQKLKHMVLDKM ARG+
Sbjct: 978  ADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS 1037

Query: 846  GPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCGL 667
            GP V++TRQPT GRA+ GG+RVGEMERDCLIAYGASMLIFERLM+SSDPFEVQVCR CGL
Sbjct: 1038 GPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGL 1097

Query: 666  LGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 514
            LGYYN+KLKAGICS+CKNG+N+S++KLPYACKLLIQELQSMNIVPRLKL E
Sbjct: 1098 LGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1148


>ref|XP_007010799.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|508727712|gb|EOY19609.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao]
          Length = 1158

 Score = 1842 bits (4772), Expect = 0.0
 Identities = 908/1132 (80%), Positives = 1007/1132 (88%), Gaps = 7/1132 (0%)
 Frame = -3

Query: 3888 IAQPFKPPPAVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSI 3709
            +A P K   AV+KFQL+PEFLKVRGLVKQHLDSFNYFVN GIKKIVRAN RI S VD SI
Sbjct: 29   LAAPIKS--AVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVDPSI 86

Query: 3708 YLRFKDIRIGEPSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNN 3529
            YLRFKD+RIGEPS+  + V EK+NPH CRLSD+TY API V+IEYI GSH QKT   KN+
Sbjct: 87   YLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKND 146

Query: 3528 VVIGRLPIMLRSCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRII 3349
            +VIGR+PIMLRSC CVLY KDEA LA+LGECPLDPGGYF+IKG EKV+LIQEQLSKNRII
Sbjct: 147  LVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNRII 206

Query: 3348 IDTDKKGRVNASVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQ 3169
            ID DKKG +NASV SS+E  KSKT I +EKEKIY+ LN F  K +PIMVVMKAMGME+DQ
Sbjct: 207  IDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKK-IPIMVVMKAMGMESDQ 265

Query: 3168 EVVQMVGRDPRFSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMK 2989
            EVVQMVGRDP ++ +LLPSIEEC   GI +Q++ALE+L+ K+ +    G +SEK+ R + 
Sbjct: 266  EVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALS 325

Query: 2988 ALREVFIGHVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVS 2809
             LR+VF+ +V V  NN RPKCLY AVM+RRM+EAI+NKD MDDKDYVGNKRLELSGQ++S
Sbjct: 326  ILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLIS 385

Query: 2808 LLFEDLFKTMIGEVIKTMDAILAKPSRSSRLDPSQLI-ARNNITAGLERTLSTGQFDIKR 2632
            LLFEDLFKT I EV K +D +L+KPSRSS LDPSQ + +R  IT GLERTLSTG FDIKR
Sbjct: 386  LLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKR 445

Query: 2631 FRLHRSGMTQPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 2452
            F++HR GMTQ L RLSFIG+LG+MTK+ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE
Sbjct: 446  FKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 505

Query: 2451 ACGLVKNLALMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGK 2272
            ACGLVKNLALMTHVTTDE+EGPL+S+CYCLGVEDLELLSGEELHTPNSFL++ NGLILGK
Sbjct: 506  ACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGK 565

Query: 2271 HRRPQRFANALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 2092
            HRRPQ FA A+RKLRRAGK+GEFVSV+VNEKQRCVYIASDGGRVCRPLVIADKG+SRIKE
Sbjct: 566  HRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKE 625

Query: 2091 HHMRELLDGVRTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGVI 1912
            HHM+ELLDGVRTFDDFLR+GLIEYLDVNEENNALIALYEGEAT +TTHIEIEP TILGV 
Sbjct: 626  HHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVC 685

Query: 1911 AGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELV 1732
            AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMD+LLYLLVYPQRPLLTTRTIELV
Sbjct: 686  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELV 745

Query: 1731 GYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTSD 1552
            GYDKLGAGQNATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIVMK+   VN+KYE   SD
Sbjct: 746  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGASD 805

Query: 1551 RILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRG---VECQY 1390
            RILRPQR    +++MQILDDDGIA PGEIIR NDIY+NK+S ++TR + V      +  Y
Sbjct: 806  RILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSESLPDSAY 865

Query: 1389 KSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGT 1210
            +   Q +KGPEGE+CVVDRVALC+DRN+NL I F+IRHTRRPEVGDKFSSRHGQKGVCGT
Sbjct: 866  RPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQKGVCGT 925

Query: 1209 IIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSG 1030
            IIQQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS GRFHYGSAFGEPSG
Sbjct: 926  IIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSG 985

Query: 1029 HADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARG 850
            HAD+VE IS++L+ HGFSY+GKDFIYSGITGCPLQ YIFMGPIYYQKLKHMVLDKM ARG
Sbjct: 986  HADRVEAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARG 1045

Query: 849  NGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCG 670
            NGP V++TRQPT GRA+ GG+RVGEMERDCLIAYGASMLIFERLM+SSDPFEVQVCRKCG
Sbjct: 1046 NGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRKCG 1105

Query: 669  LLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 514
            LLGYY++KLK GICSSCKNG+NVST+KLPYACKLLIQELQSMNIVPRLKL E
Sbjct: 1106 LLGYYSHKLKTGICSSCKNGDNVSTMKLPYACKLLIQELQSMNIVPRLKLSE 1157


>ref|XP_007010801.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
            gi|508727714|gb|EOY19611.1| DNA-directed RNA polymerase
            isoform 3 [Theobroma cacao]
          Length = 1153

 Score = 1829 bits (4737), Expect = 0.0
 Identities = 904/1132 (79%), Positives = 1002/1132 (88%), Gaps = 7/1132 (0%)
 Frame = -3

Query: 3888 IAQPFKPPPAVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSI 3709
            +A P K   AV+KFQL+PEFLKVRGLVKQHLDSFNYFVN GIKKIVRAN RI S VD SI
Sbjct: 29   LAAPIKS--AVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVDPSI 86

Query: 3708 YLRFKDIRIGEPSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNN 3529
            YLRFKD+RIGEPS+  + V EK+NPH CRLSD+TY API V+IEYI GSH QKT   KN+
Sbjct: 87   YLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKND 146

Query: 3528 VVIGRLPIMLRSCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRII 3349
            +VIGR+PIMLRSC CVLY KDEA LA+LGECPLDPGGYF+IKG EK     EQLSKNRII
Sbjct: 147  LVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEK-----EQLSKNRII 201

Query: 3348 IDTDKKGRVNASVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQ 3169
            ID DKKG +NASV SS+E  KSKT I +EKEKIY+ LN F  K +PIMVVMKAMGME+DQ
Sbjct: 202  IDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKK-IPIMVVMKAMGMESDQ 260

Query: 3168 EVVQMVGRDPRFSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMK 2989
            EVVQMVGRDP ++ +LLPSIEEC   GI +Q++ALE+L+ K+ +    G +SEK+ R + 
Sbjct: 261  EVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALS 320

Query: 2988 ALREVFIGHVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVS 2809
             LR+VF+ +V V  NN RPKCLY AVM+RRM+EAI+NKD MDDKDYVGNKRLELSGQ++S
Sbjct: 321  ILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLIS 380

Query: 2808 LLFEDLFKTMIGEVIKTMDAILAKPSRSSRLDPSQLI-ARNNITAGLERTLSTGQFDIKR 2632
            LLFEDLFKT I EV K +D +L+KPSRSS LDPSQ + +R  IT GLERTLSTG FDIKR
Sbjct: 381  LLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKR 440

Query: 2631 FRLHRSGMTQPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 2452
            F++HR GMTQ L RLSFIG+LG+MTK+ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE
Sbjct: 441  FKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 500

Query: 2451 ACGLVKNLALMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGK 2272
            ACGLVKNLALMTHVTTDE+EGPL+S+CYCLGVEDLELLSGEELHTPNSFL++ NGLILGK
Sbjct: 501  ACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGK 560

Query: 2271 HRRPQRFANALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 2092
            HRRPQ FA A+RKLRRAGK+GEFVSV+VNEKQRCVYIASDGGRVCRPLVIADKG+SRIKE
Sbjct: 561  HRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKE 620

Query: 2091 HHMRELLDGVRTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGVI 1912
            HHM+ELLDGVRTFDDFLR+GLIEYLDVNEENNALIALYEGEAT +TTHIEIEP TILGV 
Sbjct: 621  HHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVC 680

Query: 1911 AGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELV 1732
            AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMD+LLYLLVYPQRPLLTTRTIELV
Sbjct: 681  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELV 740

Query: 1731 GYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTSD 1552
            GYDKLGAGQNATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIVMK+   VN+KYE   SD
Sbjct: 741  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGASD 800

Query: 1551 RILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRG---VECQY 1390
            RILRPQR    +++MQILDDDGIA PGEIIR NDIY+NK+S ++TR + V      +  Y
Sbjct: 801  RILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSESLPDSAY 860

Query: 1389 KSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGT 1210
            +   Q +KGPEGE+CVVDRVALC+DRN+NL I F+IRHTRRPEVGDKFSSRHGQKGVCGT
Sbjct: 861  RPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQKGVCGT 920

Query: 1209 IIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSG 1030
            IIQQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS GRFHYGSAFGEPSG
Sbjct: 921  IIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSG 980

Query: 1029 HADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARG 850
            HAD+VE IS++L+ HGFSY+GKDFIYSGITGCPLQ YIFMGPIYYQKLKHMVLDKM ARG
Sbjct: 981  HADRVEAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARG 1040

Query: 849  NGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCG 670
            NGP V++TRQPT GRA+ GG+RVGEMERDCLIAYGASMLIFERLM+SSDPFEVQVCRKCG
Sbjct: 1041 NGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRKCG 1100

Query: 669  LLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 514
            LLGYY++KLK GICSSCKNG+NVST+KLPYACKLLIQELQSMNIVPRLKL E
Sbjct: 1101 LLGYYSHKLKTGICSSCKNGDNVSTMKLPYACKLLIQELQSMNIVPRLKLSE 1152


>ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
            gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase
            III subunit, putative [Ricinus communis]
          Length = 1139

 Score = 1801 bits (4664), Expect = 0.0
 Identities = 889/1119 (79%), Positives = 988/1119 (88%), Gaps = 3/1119 (0%)
 Frame = -3

Query: 3861 AVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSIYLRFKDIRI 3682
            AV+KFQL+PEFLKVRGLVKQHLDSFNYFVNIGIKKIVRAN RI S VD  IYLRFKD+RI
Sbjct: 34   AVDKFQLLPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANDRIVSTVDPGIYLRFKDVRI 93

Query: 3681 GEPSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIM 3502
            G PS + DGV E+L+PH+CRLSD TY APILV++EYI+GSH QKT   KN+VVIGR+PIM
Sbjct: 94   GTPSDIMDGVSEQLSPHMCRLSDKTYAAPILVNVEYIYGSHDQKTRVEKNDVVIGRMPIM 153

Query: 3501 LRSCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRV 3322
            LRS  CVLY KDEA LA+LGECPLDPGGYF+IKGTEKV+LIQEQLSKNRIIIDTDKKG +
Sbjct: 154  LRSRSCVLYGKDEAELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDKKGNI 213

Query: 3321 NASVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRD 3142
            NASV SSTE  KSKT I +EKEK+Y+ LN F  K +PIMVV+KAMGME+DQEVVQMVGRD
Sbjct: 214  NASVTSSTEATKSKTIIQMEKEKMYLCLNQFVKK-IPIMVVIKAMGMESDQEVVQMVGRD 272

Query: 3141 PRFSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIGH 2962
            PR+S LLLPSIEEC    I +QQKALE+LD K             +NR +  LR+VF+ +
Sbjct: 273  PRYSALLLPSIEECAGLSIYTQQKALEYLDGK-------------ENRALTILRDVFLAN 319

Query: 2961 VVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFKT 2782
            V V++NN RPKCLY AVM+RRMMEA++NKD MDDKDYVGNKRLELSGQ++SLLFEDLFKT
Sbjct: 320  VPVHKNNFRPKCLYVAVMLRRMMEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKT 379

Query: 2781 MIGEVIKTMDAILAKPSRSSRLDPSQLIARNNITAGLERTLSTGQFDIKRFRLHRSGMTQ 2602
            MI EV +T+D +L K +RSSR D +Q I R+NIT GLERTLSTG FD+KRF++HR GMTQ
Sbjct: 380  MITEVQRTIDTVLTKQNRSSRFDLAQYIVRDNITNGLERTLSTGNFDVKRFKMHRKGMTQ 439

Query: 2601 PLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLAL 2422
             LVRLS+I SLG MT++ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLAL
Sbjct: 440  VLVRLSYIASLGMMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLAL 499

Query: 2421 MTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFANA 2242
            MTHVTTD+EEGPL+S+CYCLGVEDLELLSGEELHTPNSFL++FNGLILGKHRRPQ F N+
Sbjct: 500  MTHVTTDDEEGPLISLCYCLGVEDLELLSGEELHTPNSFLVIFNGLILGKHRRPQYFVNS 559

Query: 2241 LRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDGV 2062
            +RKLRRAGKIGEFVSV+VNEKQR VY+ASDGGRVCRPLVIAD+G+SRIKEHHM+EL DGV
Sbjct: 560  MRKLRRAGKIGEFVSVFVNEKQRAVYLASDGGRVCRPLVIADRGVSRIKEHHMKELRDGV 619

Query: 2061 RTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGVIAGLIPFPHHN 1882
            RTFDDFLR+GLIEYLDVNEENNAL+ALYEGEAT +TTHIEIEP TILGV AGLIPFPHHN
Sbjct: 620  RTFDDFLRDGLIEYLDVNEENNALVALYEGEATPETTHIEIEPFTILGVCAGLIPFPHHN 679

Query: 1881 QSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN 1702
            QSPRNTYQCAMGKQAMGNIAYNQL RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN
Sbjct: 680  QSPRNTYQCAMGKQAMGNIAYNQLFRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN 739

Query: 1701 ATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTSDRILRPQRDND 1522
            ATVAVMSYSGYDIEDAIV NKA LDRGFGRCIVMKK   + +KYEN  SDRILRP R  +
Sbjct: 740  ATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYPAIRQKYENGASDRILRPDRTVE 799

Query: 1521 KMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRGV---ECQYKSTFQKFKGPEGE 1351
            + ++LD DG+AAPGEII+ +DIY+ K+ P++T   V         +Y+ +   +KGPEGE
Sbjct: 800  RERVLDYDGLAAPGEIIKPSDIYVKKECPIDTMGPVKSSAALENIKYRPSPLSYKGPEGE 859

Query: 1350 TCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSEKG 1171
            + V+DRVAL SDRNNNLCI  MIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSE+G
Sbjct: 860  SPVIDRVALSSDRNNNLCIKVMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERG 919

Query: 1170 ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSGHADKVEVISKSLV 991
            ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS GRFHYGSAFGEPSGHAD VE IS++LV
Sbjct: 920  ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVEAISETLV 979

Query: 990  DHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARGNGPHVLMTRQPTS 811
            + GFSY+GKD IYSGITGCPLQ YIFMGPIYYQKLKHMVLDKM ARGNGP V++TRQPT 
Sbjct: 980  NRGFSYNGKDIIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMLTRQPTE 1039

Query: 810  GRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCGLLGYYNYKLKAGI 631
            GRA+ GG+RVGEMERDCLIAYGASMLIFERLM+SSDPFEVQVCR CGLLGY+N KL+AGI
Sbjct: 1040 GRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRVCGLLGYFNQKLRAGI 1099

Query: 630  CSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 514
            CS+CKNG+N+ST+KLPYACKLLIQELQSMNIVPRLKL E
Sbjct: 1100 CSTCKNGDNISTMKLPYACKLLIQELQSMNIVPRLKLAE 1138


>ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cucumis
            sativus]
          Length = 1158

 Score = 1783 bits (4619), Expect = 0.0
 Identities = 886/1152 (76%), Positives = 994/1152 (86%), Gaps = 6/1152 (0%)
 Frame = -3

Query: 3951 DDSVKEK-GKNKFP-PSSLKHSDIAQPFKPPPAVNKFQLVPEFLKVRGLVKQHLDSFNYF 3778
            D S  EK G N  P  S +    I  P K   AV+KFQL+PEFLKVRGLVKQHLDSFNYF
Sbjct: 8    DASKNEKLGDNSNPIDSDIDKQFIGLPIKS--AVDKFQLLPEFLKVRGLVKQHLDSFNYF 65

Query: 3777 VNIGIKKIVRANQRIESRVDKSIYLRFKDIRIGEPSVVADGVEEKLNPHLCRLSDITYGA 3598
            VN  IKKIV+AN RIES  D SIYLRF D+RIGEPSV  + V E +NPH+CRLSD+TY A
Sbjct: 66   VNTEIKKIVKANDRIESSTDPSIYLRFLDVRIGEPSVTVNAVSETINPHMCRLSDLTYAA 125

Query: 3597 PILVDIEYIHGSHIQKTTAHKNNVVIGRLPIMLRSCFCVLYQKDEAALAKLGECPLDPGG 3418
            PILVDIEYI  SH QK    K +VVIGR+PIMLRS  CVL+ KDEA LA+LGECPLDPGG
Sbjct: 126  PILVDIEYIEESHAQKAPREKKDVVIGRMPIMLRSRCCVLHGKDEAELARLGECPLDPGG 185

Query: 3417 YFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRVNASVMSSTETVKSKTNIFIEKEKIYVQL 3238
            YFIIKGTEKV+LIQEQLSKNRIIIDTDKKG +NASV SSTE  KSKT I +E EKIY+QL
Sbjct: 186  YFIIKGTEKVVLIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTVIKMENEKIYLQL 245

Query: 3237 NIFGNKGVPIMVVMKAMGMENDQEVVQMVGRDPRFSKLLLPSIEECRAHGIDSQQKALEF 3058
            NIF    +PIMVV+KAMGME+ QEVVQMVGRDPR+  LLLPSIEEC    I +Q++ALE+
Sbjct: 246  NIFTTPKIPIMVVLKAMGMESIQEVVQMVGRDPRYGALLLPSIEECAKEKIYTQEQALEY 305

Query: 3057 LDRKISKGPAYGGSSEKDNRVMKALREVFIGHVVVNQNNLRPKCLYAAVMIRRMMEAIIN 2878
            L+ K+ K        EK+ R +  LR+VF+ +V V +NN  PKC+Y AVM+RRMM+AI++
Sbjct: 306  LETKVKKFQFASAPPEKEGRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMMDAILS 365

Query: 2877 KDTMDDKDYVGNKRLELSGQMVSLLFEDLFKTMIGEVIKTMDAILAKPSRSSRLDPSQLI 2698
            KD MDDKDYVGNKRLELSGQ++SLLFEDLFKTM+ EV KT+D +L K SRSSR D SQ +
Sbjct: 366  KDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMVSEVKKTIDKLLGKHSRSSRFDFSQHL 425

Query: 2697 ARNNITAGLERTLSTGQFDIKRFRLHRSGMTQPLVRLSFIGSLGHMTKIQPQFEKSRKVS 2518
              N I+ GLERTLSTG +D+KRFR+HR GM+Q L RLSFI ++GH+T++ PQFEKSRKVS
Sbjct: 426  NSNIISFGLERTLSTGNWDVKRFRMHRKGMSQVLARLSFISTMGHVTRVSPQFEKSRKVS 485

Query: 2517 GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLVSVCYCLGVEDLELL 2338
            GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD+EEGPL+S+CYCLGVEDLELL
Sbjct: 486  GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDQEEGPLISLCYCLGVEDLELL 545

Query: 2337 SGEELHTPNSFLIVFNGLILGKHRRPQRFANALRKLRRAGKIGEFVSVYVNEKQRCVYIA 2158
            S EELHTPNSFL++FNG ILGKHRRPQ FA  +R LRRAGKIGEFVSV+VNEKQ CVYIA
Sbjct: 546  SAEELHTPNSFLVIFNGRILGKHRRPQYFATGMRMLRRAGKIGEFVSVFVNEKQHCVYIA 605

Query: 2157 SDGGRVCRPLVIADKGISRIKEHHMRELLDGVRTFDDFLREGLIEYLDVNEENNALIALY 1978
            SDGGRVCRPLVIADKG+SRIKE+HM+EL DGVRTFDDFLR+GLIEYLDVNEENNALIALY
Sbjct: 606  SDGGRVCRPLVIADKGVSRIKEYHMKELSDGVRTFDDFLRDGLIEYLDVNEENNALIALY 665

Query: 1977 EGEATRDTTHIEIEPLTILGVIAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMD 1798
            EGEAT +TTHIEIEP TILGV+AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD
Sbjct: 666  EGEATPETTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMD 725

Query: 1797 SLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGF 1618
            +LLYLLVYPQRPLLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV NK+ LDRGF
Sbjct: 726  TLLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGF 785

Query: 1617 GRCIVMKKMKVVNEKYENNTSDRILRPQRDND---KMQILDDDGIAAPGEIIRTNDIYLN 1447
            GRCIV KK   VN+KYENNT+DRI+RP R+ D    MQILDDDG+AAPGEIIR NDIY+N
Sbjct: 786  GRCIVFKKYSSVNQKYENNTADRIVRPNRNEDFTGNMQILDDDGLAAPGEIIRPNDIYVN 845

Query: 1446 KQSPVNTRDTVVRGV-ECQYKSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTR 1270
            KQSP+  + + + G+ +  Y+   Q FKG EGE  VVDRVAL +D+N+ LCI F+IR TR
Sbjct: 846  KQSPIIMKGSPLPGIPDNAYRPCRQIFKGSEGEPTVVDRVALSTDKNDCLCIKFLIRQTR 905

Query: 1269 RPEVGDKFSSRHGQKGVCGTIIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGG 1090
            RPE+GDKFSSRHGQKGVCGTI+QQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLGG
Sbjct: 906  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 965

Query: 1089 KAGVSNGRFHYGSAFGEPSGHADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFM 910
            KAGVS GRFHYGSAFGEPSGHADKV+ IS++L+  GFSY+GKDF+YSGITGCPLQ YIFM
Sbjct: 966  KAGVSCGRFHYGSAFGEPSGHADKVDAISETLIKRGFSYNGKDFLYSGITGCPLQAYIFM 1025

Query: 909  GPIYYQKLKHMVLDKMQARGNGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLI 730
            GPIYYQKLKHMVLDKM ARG+GP V++TRQPT GRA+ GG+RVGEMERDCLIAYGASMLI
Sbjct: 1026 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1085

Query: 729  FERLMLSSDPFEVQVCRKCGLLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQ 550
            +ERLM+SSDPFEVQVCR CGLLGYYN+KLK GICSSCKNG+N+ST+KLPYACKLLIQELQ
Sbjct: 1086 YERLMISSDPFEVQVCRVCGLLGYYNHKLKTGICSSCKNGDNISTMKLPYACKLLIQELQ 1145

Query: 549  SMNIVPRLKLVE 514
            SMNIVPRLKL E
Sbjct: 1146 SMNIVPRLKLAE 1157


>ref|XP_004308665.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
            [Fragaria vesca subsp. vesca]
          Length = 1163

 Score = 1766 bits (4573), Expect = 0.0
 Identities = 873/1164 (75%), Positives = 997/1164 (85%), Gaps = 10/1164 (0%)
 Frame = -3

Query: 3975 MGIQPDNADDSVKEKGKNKF---PPSSLKHSDIAQPFKPPP---AVNKFQLVPEFLKVRG 3814
            MG+  D+  +S   + K +     P  + H DI +     P   A +KF L+PEFLKVRG
Sbjct: 1    MGVPQDSLPNSPNNRKKQQQGFRKPKQVHHMDIDKELLAAPIKSAKDKFALIPEFLKVRG 60

Query: 3813 LVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSIYLRFKDIRIGEPSVVADGVEEKLNP 3634
            LVKQHLDSFNYFVN GIKKIVRAN RI S VD SI+LRF ++ I  PS+  DGV  ++ P
Sbjct: 61   LVKQHLDSFNYFVNTGIKKIVRANDRIVSGVDPSIWLRFNNVYIDRPSLTTDGVTTEIAP 120

Query: 3633 HLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIMLRSCFCVLYQKDEAAL 3454
            H CRLSD+TY API VD+EY+ GSH QK  A +  + IGRLPIMLRSC C LY K E+ L
Sbjct: 121  HTCRLSDMTYSAPIRVDVEYVEGSHDQKMIATRKGIEIGRLPIMLRSCCCTLYGKTESEL 180

Query: 3453 AKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRVNASVMSSTETVKSKTN 3274
            A LGECPLDPGGYFIIKG EKVLLIQEQLSKNRIIID DKKG VNASV SS+ET+KSKT 
Sbjct: 181  ATLGECPLDPGGYFIIKGNEKVLLIQEQLSKNRIIIDMDKKGNVNASVTSSSETIKSKTI 240

Query: 3273 IFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRDPRFSKLLLPSIEECRA 3094
            I +EK+KIY++LN F  K +PIMVVMKAMGM +DQEVVQMVGRDPR+  LL+PSIEEC  
Sbjct: 241  IQMEKQKIYLELNQFSKK-IPIMVVMKAMGMTSDQEVVQMVGRDPRYGALLMPSIEECAK 299

Query: 3093 HGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIGHVVVNQNNLRPKCLYAA 2914
             GI ++++AL +L+ K+ +      SS+KD++VM  LR++FI +V V ++N RPKC+Y A
Sbjct: 300  EGIYTKEQALLYLEPKVKRSMFDSASSDKDSKVMAVLRDIFIANVPVRRSNFRPKCIYVA 359

Query: 2913 VMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFKTMIGEVIKTMDAILAKP 2734
            VM+RR+M+AI+NKDTMDDKDYVGNKRLELSGQ +SLLFEDLFKTMI EV KT+D IL KP
Sbjct: 360  VMLRRIMDAILNKDTMDDKDYVGNKRLELSGQSISLLFEDLFKTMISEVRKTVDNILTKP 419

Query: 2733 SRSSRLDPSQLIARNNITAGLERTLSTGQFDIKRFRLHRSGMTQPLVRLSFIGSLGHMTK 2554
            SRSSR D +Q I ++ I+ GLERTLSTG FD+KRF++HR+GMTQ L RLSFIGSLG MT+
Sbjct: 420  SRSSRFDLAQYIRKDQISLGLERTLSTGNFDLKRFKMHRTGMTQVLARLSFIGSLGQMTR 479

Query: 2553 IQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLVSV 2374
             +PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALM HVTTDEEEGPL+S+
Sbjct: 480  TKPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMAHVTTDEEEGPLISL 539

Query: 2373 CYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFANALRKLRRAGKIGEFVSV 2194
            C CLGVEDLE LS EELH+PNSFL++FNG ILGKHR+PQR A A+RKLRRAGKIGEFVSV
Sbjct: 540  CKCLGVEDLETLSAEELHSPNSFLVLFNGDILGKHRKPQRLATAMRKLRRAGKIGEFVSV 599

Query: 2193 YVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDGVRTFDDFLREGLIEYLD 2014
            +VNEKQ CVYIASDGGRVCRPLVIADKGISR+KE+HM+EL  GVRTFDDFL +GLIEYLD
Sbjct: 600  FVNEKQHCVYIASDGGRVCRPLVIADKGISRVKEYHMQELNAGVRTFDDFLSDGLIEYLD 659

Query: 2013 VNEENNALIALYEGEATRDTTHIEIEPLTILGVIAGLIPFPHHNQSPRNTYQCAMGKQAM 1834
            VNE+NNALIALYE EAT +TTHIEIEP TILGVIAGLIP+PHHNQSPRNTYQCAMGKQAM
Sbjct: 660  VNEQNNALIALYEDEATTETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 719

Query: 1833 GNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDA 1654
            GNIAYNQL R+D LLYLLVYPQRPLLTT+TIELVG+DKLGAGQNATVAVMSYSGYDIEDA
Sbjct: 720  GNIAYNQLRRID-LLYLLVYPQRPLLTTKTIELVGFDKLGAGQNATVAVMSYSGYDIEDA 778

Query: 1653 IVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTSDRILRPQR---DNDKMQILDDDGIAAP 1483
            IV NK+ LDRGFGRCI+MKK  V N+ Y NNT DRI++P +   D+ KM++LDDDGIAAP
Sbjct: 779  IVMNKSSLDRGFGRCILMKKFVVANQNYSNNTQDRIIKPNKDEVDSGKMRVLDDDGIAAP 838

Query: 1482 GEIIRTNDIYLNKQSPVNTRDTVVRGV-ECQYKSTFQKFKGPEGETCVVDRVALCSDRNN 1306
            GEII  NDIY+ KQ P+ TR  +  G+ +  Y+STFQ++KGP+GE+CVVD+VAL SD++N
Sbjct: 839  GEIITANDIYVKKQVPIVTRGAIRSGLKDSDYRSTFQRYKGPDGESCVVDKVALFSDKHN 898

Query: 1305 NLCINFMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSEKGICPDLIMNPHGFPSR 1126
            NLC+  +IRHTRRPEVGDKFSSRHGQKGVCGTI+QQEDFPFSE+GICPDLIMNPHGFPSR
Sbjct: 899  NLCVKLLIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSR 958

Query: 1125 MTVGKMIELLGGKAGVSNGRFHYGSAFGEPSGHADKVEVISKSLVDHGFSYSGKDFIYSG 946
            MTVGKMIELLGGKAGVS GRFHYGSAFGEPSGHADKVE IS++LV  GFSY GKD+I SG
Sbjct: 959  MTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADKVEAISETLVRMGFSYDGKDYICSG 1018

Query: 945  ITGCPLQTYIFMGPIYYQKLKHMVLDKMQARGNGPHVLMTRQPTSGRAKAGGMRVGEMER 766
            ITGCPLQ YIFMGPIYYQKLKHMVLDKM ARG+GP V +TRQPT G+A+ GG+RVGEMER
Sbjct: 1019 ITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVSLTRQPTEGKARNGGLRVGEMER 1078

Query: 765  DCLIAYGASMLIFERLMLSSDPFEVQVCRKCGLLGYYNYKLKAGICSSCKNGENVSTLKL 586
            DCLIAYGASML++ERLM+SSDPFEVQVCR CGLLGYYN+K+KAGICSSCKNG+N+ST+KL
Sbjct: 1079 DCLIAYGASMLLYERLMISSDPFEVQVCRVCGLLGYYNHKMKAGICSSCKNGDNISTMKL 1138

Query: 585  PYACKLLIQELQSMNIVPRLKLVE 514
            PYACKLLIQELQSMNIVPRLKL E
Sbjct: 1139 PYACKLLIQELQSMNIVPRLKLAE 1162


>ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Solanum tuberosum] gi|565393087|ref|XP_006362215.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Solanum tuberosum]
          Length = 1153

 Score = 1764 bits (4569), Expect = 0.0
 Identities = 882/1133 (77%), Positives = 983/1133 (86%), Gaps = 8/1133 (0%)
 Frame = -3

Query: 3888 IAQPFKPPPAVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSI 3709
            +A P K    V+K+QLVPEFLKVRGLVKQHLDSFNYFV   IKKIVRANQ I S +D +I
Sbjct: 23   LASPIKN--LVDKYQLVPEFLKVRGLVKQHLDSFNYFVRTEIKKIVRANQEIRSILDPNI 80

Query: 3708 YLRFKDIRIGEPSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNN 3529
            YLR++D+ IGEPS+V D V EKL P  CRLSD TY API V IEY  GSH Q + + K N
Sbjct: 81   YLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRTYAAPIYVTIEYTTGSHGQTSVSTKKN 140

Query: 3528 VVIGRLPIMLRSCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRII 3349
            V+IGR+PIMLRS  CVLY KDE  LA+LGECPLDPGGYF+IKGTEKV+LIQEQLSKNRII
Sbjct: 141  VIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRII 200

Query: 3348 IDTDKKGRVNASVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQ 3169
            IDTDKKG V ASV SSTE  KSKT I +EKEK+Y++LN+F  K VPIMVVMKAMGME+DQ
Sbjct: 201  IDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFKTK-VPIMVVMKAMGMESDQ 259

Query: 3168 EVVQMVGRDPRFSKLLLPSIEECRAHGIDSQQKALEFLDR-KISKGPAYG-GSSEKDNRV 2995
            EVVQM+GRDPRFS LLLPSIEEC    + +Q +ALEFL+  K+ K P+Y  G  EK  R 
Sbjct: 260  EVVQMIGRDPRFSALLLPSIEECADLKLYTQHQALEFLESDKMLKMPSYSTGPVEKGARA 319

Query: 2994 MKALREVFIGHVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQM 2815
            +  LR++F+ +V V+Q+N R KC+Y AVM+RRMMEAI+NKD MDDKDYVGNKRLELSGQ+
Sbjct: 320  LSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSGQL 379

Query: 2814 VSLLFEDLFKTMIGEVIKTMDAILAKPSRSSRLDPSQLIARNNITAGLERTLSTGQFDIK 2635
            +SLLFEDLFKTM  E  +T+D +LA+PSRSSRLD SQ I +++IT GLERTLSTG +D+K
Sbjct: 380  LSLLFEDLFKTMNDEARRTIDTLLARPSRSSRLDISQYIVKDSITMGLERTLSTGNWDVK 439

Query: 2634 RFRLHRSGMTQPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 2455
            RFR+HR GMTQ + RLS+IGSLGHMTKI PQFEKSRKVSGPRALQPSQ+GMLCPCDTPEG
Sbjct: 440  RFRMHRKGMTQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQFGMLCPCDTPEG 499

Query: 2454 EACGLVKNLALMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILG 2275
            EACGLVKNLALMTHVTTDE+E P++S+CYCLGVEDLE LS EELH P S+LI  NGLILG
Sbjct: 500  EACGLVKNLALMTHVTTDEDERPIMSLCYCLGVEDLEQLSPEELHMPTSYLITLNGLILG 559

Query: 2274 KHRRPQRFANALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 2095
            KH+ PQRFANA+R+LRRAGKIGEFVS++VNEKQRCVYIASDGGRVCRPLVIADKG+SRIK
Sbjct: 560  KHKSPQRFANAMRRLRRAGKIGEFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIK 619

Query: 2094 EHHMRELLDGVRTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGV 1915
            EHHMREL DGVR FD FL++GLIEYLDVNEENN LIALYE EAT +TTHIEIEP TILGV
Sbjct: 620  EHHMRELRDGVRDFDSFLKDGLIEYLDVNEENNTLIALYEKEATPETTHIEIEPFTILGV 679

Query: 1914 IAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIEL 1735
             AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD LLYLLVYPQRPLLTTRTIEL
Sbjct: 680  CAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDGLLYLLVYPQRPLLTTRTIEL 739

Query: 1734 VGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTS 1555
            VGYDKLGAGQNATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIVMKK   + +KYEN TS
Sbjct: 740  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKYSAICQKYENGTS 799

Query: 1554 DRILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRGV---ECQ 1393
            DRI++PQR   + DKMQILDDDG+AAPGE IR +DIY+NK+SP  TR  +   +   +  
Sbjct: 800  DRIIKPQRQGFEADKMQILDDDGMAAPGETIRNHDIYINKESPTVTRTPITSPMGLPDSA 859

Query: 1392 YKSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCG 1213
            YK++ Q +KGPEGET VVDRVAL SDRNNNL I FMIRHTRRPE+GDKFSSRHGQKGVCG
Sbjct: 860  YKTSRQTYKGPEGETAVVDRVALYSDRNNNLSIKFMIRHTRRPEIGDKFSSRHGQKGVCG 919

Query: 1212 TIIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPS 1033
            TI+QQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFGEPS
Sbjct: 920  TIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGEPS 979

Query: 1032 GHADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQAR 853
            GHAD V+ IS++LV HGFSY+GKDFIYSGITG PLQ YIFMGPIYYQKLKHMVLDKM AR
Sbjct: 980  GHADTVDSISETLVKHGFSYNGKDFIYSGITGMPLQAYIFMGPIYYQKLKHMVLDKMHAR 1039

Query: 852  GNGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKC 673
            G+GP V+MTRQPT GR++ GG+RVGEMERDCLIAYGASMLI+ERLM+SSDPFEVQVCRKC
Sbjct: 1040 GSGPRVMMTRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRKC 1099

Query: 672  GLLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 514
            GLLGYYNYKLK GICS CKNGEN+ST+KLPYACKLL QELQSMNIVPRLKL E
Sbjct: 1100 GLLGYYNYKLKTGICSMCKNGENISTMKLPYACKLLFQELQSMNIVPRLKLAE 1152


>ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum
            lycopersicum]
          Length = 1183

 Score = 1762 bits (4564), Expect = 0.0
 Identities = 877/1123 (78%), Positives = 980/1123 (87%), Gaps = 8/1123 (0%)
 Frame = -3

Query: 3858 VNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSIYLRFKDIRIG 3679
            V+K+QLVPEFLKVRGLVKQHLDSFNYFV   IKKIVRANQ I S +D +IYLR++D+ IG
Sbjct: 61   VDKYQLVPEFLKVRGLVKQHLDSFNYFVRTEIKKIVRANQEIRSTLDPNIYLRYRDVHIG 120

Query: 3678 EPSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIML 3499
            EPS+V D V EKL P  CRLSD TY API V I+Y  GSH Q + + K NV+IGR+PIML
Sbjct: 121  EPSMVFDAVTEKLCPQKCRLSDRTYAAPIYVTIDYTTGSHGQTSVSTKKNVIIGRMPIML 180

Query: 3498 RSCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRVN 3319
            RS  CVLY KDE  LA+LGECPLDPGGYF+IKGTEKV+LIQEQLSKNRIIIDTDKKG V 
Sbjct: 181  RSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDKKGSVQ 240

Query: 3318 ASVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRDP 3139
            ASV SSTE  KSKT I +EKEK+Y++LN+F  K VPIMVVMKAMGME+DQEVVQM+GRDP
Sbjct: 241  ASVTSSTEKTKSKTIIKMEKEKVYLELNMFKTK-VPIMVVMKAMGMESDQEVVQMIGRDP 299

Query: 3138 RFSKLLLPSIEECRAHGIDSQQKALEFLDR-KISKGPAYG-GSSEKDNRVMKALREVFIG 2965
            RFS LLLPSIEEC    + +QQ+ALEFL+  K+ K P+Y  G  EK  R +  LR++F+ 
Sbjct: 300  RFSALLLPSIEECADLKLYTQQQALEFLESDKMLKMPSYSTGPIEKGARALSILRDIFLA 359

Query: 2964 HVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFK 2785
            +V V+Q+N R KC+Y AVM+RRMMEAI+NKD MDDKDYVGNKRLELSGQ++SLLFEDLFK
Sbjct: 360  NVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSGQLLSLLFEDLFK 419

Query: 2784 TMIGEVIKTMDAILAKPSRSSRLDPSQLIARNNITAGLERTLSTGQFDIKRFRLHRSGMT 2605
            TM  E  +T+D +LA+PSRSSRLD SQ I +++IT GLERTLSTG +D+KRFR+HR GMT
Sbjct: 420  TMNDEARRTIDTLLARPSRSSRLDISQYIIKDSITMGLERTLSTGNWDVKRFRMHRKGMT 479

Query: 2604 QPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 2425
            Q + RLS+IGSLGHMTKI PQFEKSRKVSGPRALQPSQ+GMLCPCDTPEGEACGLVKNLA
Sbjct: 480  QVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQFGMLCPCDTPEGEACGLVKNLA 539

Query: 2424 LMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFAN 2245
            LMTHVTTDE+E P++S+CYCLGVEDLE LS EELH P S+LI  NGLILGKH+ PQRFAN
Sbjct: 540  LMTHVTTDEDERPIMSLCYCLGVEDLEQLSPEELHMPTSYLITLNGLILGKHKSPQRFAN 599

Query: 2244 ALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDG 2065
            A+R+LRRAGK+GEFVS++VNEKQRCVYIASDGGRVCRPLVIADKG+SRIKEHHMREL DG
Sbjct: 600  AMRRLRRAGKVGEFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMRELRDG 659

Query: 2064 VRTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGVIAGLIPFPHH 1885
            +R FD FL++GLIEYLDVNEENN LIALYE EAT +TTHIEIEP TILGV AGLIP+PHH
Sbjct: 660  LRDFDSFLKDGLIEYLDVNEENNTLIALYEKEATPETTHIEIEPFTILGVCAGLIPYPHH 719

Query: 1884 NQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 1705
            NQSPRNTYQCAMGKQAMGNIAYNQL RMD LLYLLVYPQRPLLTTRTIELVGYDKLGAGQ
Sbjct: 720  NQSPRNTYQCAMGKQAMGNIAYNQLNRMDGLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 779

Query: 1704 NATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTSDRILRPQR-- 1531
            NATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIVMKK   + +KYEN TSDRI++PQR  
Sbjct: 780  NATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKYSAICQKYENGTSDRIIKPQRQG 839

Query: 1530 -DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRGV---ECQYKSTFQKFKG 1363
             + D+MQILDDDG+AAPGE IR +DIY+NK+SP  TR  V   +   +  YKS+ Q +KG
Sbjct: 840  PEADRMQILDDDGMAAPGETIRNHDIYINKESPTVTRTPVTSPMGLPDSAYKSSKQTYKG 899

Query: 1362 PEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPF 1183
            PEGET VVDRVAL SDRNNNL I FMIRHTRRPE+GDKFSSRHGQKGVCGTI+QQEDFPF
Sbjct: 900  PEGETAVVDRVALYSDRNNNLSIKFMIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPF 959

Query: 1182 SEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSGHADKVEVIS 1003
            SE+GICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFGEPSGHAD V+ IS
Sbjct: 960  SERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGEPSGHADTVDAIS 1019

Query: 1002 KSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARGNGPHVLMTR 823
            ++LV HGFSY+GKDFIYSGITG PLQ YIFMGPIYYQKLKHMV+DKM ARG+GP V+MTR
Sbjct: 1020 ETLVKHGFSYNGKDFIYSGITGMPLQAYIFMGPIYYQKLKHMVVDKMHARGSGPRVMMTR 1079

Query: 822  QPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCGLLGYYNYKL 643
            QPT GR++ GG+RVGEMERDCLIAYGASMLI+ERLM+SSDPFEVQVCRKCGLLGYYNYKL
Sbjct: 1080 QPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRKCGLLGYYNYKL 1139

Query: 642  KAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 514
            K GICS CKNGEN+ST+KLPYACKLL QELQSMNIVPRLKL E
Sbjct: 1140 KTGICSMCKNGENISTMKLPYACKLLFQELQSMNIVPRLKLAE 1182


>ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutrema salsugineum]
            gi|557099252|gb|ESQ39616.1| hypothetical protein
            EUTSA_v10000748mg [Eutrema salsugineum]
          Length = 1164

 Score = 1756 bits (4547), Expect = 0.0
 Identities = 860/1136 (75%), Positives = 987/1136 (86%), Gaps = 20/1136 (1%)
 Frame = -3

Query: 3855 NKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSIYLRFKDIRIGE 3676
            +KFQLVPEFLKVRGLVKQHLDSFNYFVN+GIKKIVRAN  I S +D  IYLRFK++R+GE
Sbjct: 31   DKFQLVPEFLKVRGLVKQHLDSFNYFVNVGIKKIVRANSLITSSLDPEIYLRFKEVRVGE 90

Query: 3675 PSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIMLR 3496
            PS++   + E++NPH+CRL+D+TY API V+IEY HGSH +   + K+NV+IGR+PIMLR
Sbjct: 91   PSILNVNMAEEINPHMCRLADMTYAAPIYVNIEYAHGSHGKTQHSAKDNVIIGRMPIMLR 150

Query: 3495 SCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRVNA 3316
            SC CVL+ KDE  LA+LGECPLDPGGYF+IKGTEKVLLIQEQLSKNRIIID+DKKG +NA
Sbjct: 151  SCRCVLHGKDEEELARLGECPLDPGGYFVIKGTEKVLLIQEQLSKNRIIIDSDKKGNINA 210

Query: 3315 SVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRDPR 3136
            SV SSTE  KSKT I +EK KIY+ L+ F  K +PI++V+KAMGME+DQE+VQMVGRDPR
Sbjct: 211  SVTSSTEMTKSKTVIQMEKGKIYLFLHQFVKK-IPIIIVLKAMGMESDQEIVQMVGRDPR 269

Query: 3135 FSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIGHVV 2956
            FS  LLPSIEEC + G++++++AL++L+ K+ K  +YG   EKD R +  LR+VF+ HV 
Sbjct: 270  FSASLLPSIEECVSEGVNTRKQALDYLEAKVKK-TSYGPPPEKDGRALYILRDVFLAHVP 328

Query: 2955 VNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFKTMI 2776
            V  NN R KC Y  VM+RRM+EA++NKD MDDKDYVGNKRLELSGQ++SLLFEDLFKTMI
Sbjct: 329  VRDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMI 388

Query: 2775 GEVIKTMDAILAKPSRSSRLDPSQLIA---RNNITAGLERTLSTGQFDIKRFRLHRSGMT 2605
             E +K +D IL KP+R+SR D SQ +     +NI+ GLERTLSTG FDIKRFR+HR GMT
Sbjct: 389  TEAVKKVDGILQKPNRASRFDFSQCLTGEKNHNISFGLERTLSTGNFDIKRFRMHRKGMT 448

Query: 2604 QPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 2425
            Q L RLSFIGSLG +TKI PQFEKSRKVSGPR+LQPSQWGMLCPCDTPEGE+CGLVKNLA
Sbjct: 449  QVLTRLSFIGSLGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLA 508

Query: 2424 LMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFAN 2245
            LMTHVTTDEEEGPLV++CY LGV DLE+LS EELHTP+SFL++FNGLILGKHRRPQ FAN
Sbjct: 509  LMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVIFNGLILGKHRRPQYFAN 568

Query: 2244 ALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDG 2065
            +LR+LRRAGKIGEFVSV++NEKQ CVY+ASDGGRVCRPLVIADKG+SR+K+HHM+EL DG
Sbjct: 569  SLRRLRRAGKIGEFVSVFINEKQHCVYVASDGGRVCRPLVIADKGVSRVKQHHMKELQDG 628

Query: 2064 VRTFDDFLREGLIEYLDVNEENNALIALYEGEATRD-------------TTHIEIEPLTI 1924
            VRTFDDF+R+GLIEYLDVNEENNALIALYE +AT +             TTHIEIEP TI
Sbjct: 629  VRTFDDFIRDGLIEYLDVNEENNALIALYESDATSEMAETAEAAKIREGTTHIEIEPFTI 688

Query: 1923 LGVIAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRT 1744
            LGV+AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD+LLYLLVYPQRPLLTTRT
Sbjct: 689  LGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRT 748

Query: 1743 IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYEN 1564
            IELVGYDKLGAGQNATVAVMS +GYDIEDAIV NKA LDRGFGRCIVMKK+    +KY N
Sbjct: 749  IELVGYDKLGAGQNATVAVMSNTGYDIEDAIVMNKASLDRGFGRCIVMKKIVATCQKYGN 808

Query: 1563 NTSDRILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRGV-EC 1396
            +  DRILRPQR   D +KMQILDDDGIAAPGEIIR ND+Y+NKQ PV+TRD +   + + 
Sbjct: 809  DAVDRILRPQRTGPDAEKMQILDDDGIAAPGEIIRPNDVYINKQIPVDTRDNITSPLSDS 868

Query: 1395 QYKSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVC 1216
            QY+   + FKGPEGET VVDRVALCSD+N NLCI ++IRHTRRPE+GDKFSSRHGQKGVC
Sbjct: 869  QYRPAREYFKGPEGETQVVDRVALCSDKNGNLCIKYIIRHTRRPELGDKFSSRHGQKGVC 928

Query: 1215 GTIIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEP 1036
            GTI+QQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLG KAGV +GRFHYGSAFGE 
Sbjct: 929  GTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVCSGRFHYGSAFGER 988

Query: 1035 SGHADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQA 856
            SGHADKVE IS +LV HGFSYSGKD +YSG++G PLQTY+FMGPIYYQKLKHMVLDKM A
Sbjct: 989  SGHADKVETISATLVKHGFSYSGKDLLYSGLSGEPLQTYVFMGPIYYQKLKHMVLDKMHA 1048

Query: 855  RGNGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRK 676
            RG+GP V+MTRQPT G++K GG+RVGEMERDCLIAYGASMLI+ERLM+SSDPFEVQVCR 
Sbjct: 1049 RGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRT 1108

Query: 675  CGLLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVEPF 508
            CGLLGYYNYKLK   CS+CKNG+N++T+KLPYACKLL QELQSMN+VPRLKLVE +
Sbjct: 1109 CGLLGYYNYKLKKAFCSTCKNGDNIATMKLPYACKLLFQELQSMNVVPRLKLVEAY 1164


>ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
            lyrata] gi|297309357|gb|EFH39781.1| hypothetical protein
            ARALYDRAFT_917015 [Arabidopsis lyrata subsp. lyrata]
          Length = 1165

 Score = 1754 bits (4543), Expect = 0.0
 Identities = 865/1136 (76%), Positives = 989/1136 (87%), Gaps = 22/1136 (1%)
 Frame = -3

Query: 3855 NKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSIYLRFKDIRIGE 3676
            +KFQLVPEFLKVRGLVKQHLDSFNYF+N+GIKKIV AN RI S  D SIYLRFK++R+GE
Sbjct: 31   DKFQLVPEFLKVRGLVKQHLDSFNYFINVGIKKIVHANCRIASVTDPSIYLRFKNVRVGE 90

Query: 3675 PSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIMLR 3496
            PS++   + E++NPH+CRL+D+TY API V+IEY+HGSH +K T+ KN+ +IGR+PIMLR
Sbjct: 91   PSIMNINISEEINPHMCRLADMTYAAPIYVNIEYVHGSHGKKATSVKNDFIIGRMPIMLR 150

Query: 3495 SCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRVNA 3316
            SC CVL+ KDE  LA+LGECPLDPGGYF+IKGTEKVLLIQEQLSKNRIIID+DKKG +NA
Sbjct: 151  SCRCVLHGKDEEELARLGECPLDPGGYFVIKGTEKVLLIQEQLSKNRIIIDSDKKGNINA 210

Query: 3315 SVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRDPR 3136
            SV SSTE  KSKT I +EKEKIY+ L+ F  K +PI++V+KAMGME+DQE+VQMVGRDPR
Sbjct: 211  SVTSSTEMTKSKTVIQMEKEKIYLFLHQFVKK-IPIVIVLKAMGMESDQEIVQMVGRDPR 269

Query: 3135 FSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIGHVV 2956
            FS  LLPSIEEC + G+++Q++AL++L+ K+ K  +YG   EKD R +  LR++F+ HV 
Sbjct: 270  FSASLLPSIEECVSEGVNTQKQALDYLEAKVKK-TSYGPPPEKDGRALYILRDLFLAHVP 328

Query: 2955 VNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFKTMI 2776
            V  NN R KC Y  VM+RRM+EA++NKD+MDDKDYVGNKRLELSGQ++SLLFEDLFKTM+
Sbjct: 329  VRDNNFRQKCFYVGVMLRRMIEAMLNKDSMDDKDYVGNKRLELSGQLMSLLFEDLFKTML 388

Query: 2775 GEVIKTMDAILAKPSRSSRLDPSQLI----ARNNITAGLERTLSTGQFDIKRFRLHRSGM 2608
             E IK +DAIL+KPSR+SR D SQ +    ++N I+ GLERTLSTG FDIKRFR+HR GM
Sbjct: 389  SEAIKKVDAILSKPSRASRFDFSQYLTTGDSQNTISVGLERTLSTGNFDIKRFRMHRKGM 448

Query: 2607 TQPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNL 2428
            TQ L RLSFIGSLG +TKI PQFEKSRKVSGPR+LQPSQWGMLCPCDTPEGE+CGLVKNL
Sbjct: 449  TQVLTRLSFIGSLGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNL 508

Query: 2427 ALMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFA 2248
            ALMTHVTTDEEEGPLV++CY LGV DLE+LS EELHTP+SFL++ NGLILGKHRRPQ FA
Sbjct: 509  ALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILGKHRRPQYFA 568

Query: 2247 NALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLD 2068
            N+LR+LRRAGKIGEFVSV+ NEKQ CVY+ASDGGRVCRPLVIADKGISR+K+HHM+EL D
Sbjct: 569  NSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDGGRVCRPLVIADKGISRVKQHHMKELQD 628

Query: 2067 GVRTFDDFLREGLIEYLDVNEENNALIALYEGEATR-------------DTTHIEIEPLT 1927
            GVRTFDDF+R+GLIEYLDVNEENNALIALYE EAT              DTTHIEIEP T
Sbjct: 629  GVRTFDDFIRDGLIEYLDVNEENNALIALYESEATTELDEGAEAAKIKADTTHIEIEPFT 688

Query: 1926 ILGVIAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTR 1747
            ILGV+AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD+LLYLLVYPQRPLLTTR
Sbjct: 689  ILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTR 748

Query: 1746 TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYE 1567
            TIELVGYDKLGAGQNATVAVMS SGYDIEDAIV NK+ LDRGFGRCIVMKK+    +KYE
Sbjct: 749  TIELVGYDKLGAGQNATVAVMSNSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVATCQKYE 808

Query: 1566 NNTSDRILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPV-NTRDTVVRGV- 1402
            N T DRIL PQR   D +KMQILDDDGIA+PGEIIR ND+Y+ KQ PV  TRD +   + 
Sbjct: 809  NGTVDRILMPQRTGPDAEKMQILDDDGIASPGEIIRPNDVYIYKQIPVCTTRDKITSPLS 868

Query: 1401 ECQYKSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKG 1222
            + QY+   + FKGPEGET VVDRVALCSD++ +LCI ++IRHTRRPE+GDKFSSRHGQKG
Sbjct: 869  DSQYRPAREFFKGPEGETQVVDRVALCSDKSGSLCIKYIIRHTRRPELGDKFSSRHGQKG 928

Query: 1221 VCGTIIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFG 1042
            VCGTIIQQEDFPFSE GICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFG
Sbjct: 929  VCGTIIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 988

Query: 1041 EPSGHADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKM 862
            E SGHADKVE ISK+LVD GFSYSGKD +YSG++G PL+ YIFMGPIYYQKLKHMVLDKM
Sbjct: 989  ERSGHADKVETISKTLVDKGFSYSGKDLLYSGLSGEPLEAYIFMGPIYYQKLKHMVLDKM 1048

Query: 861  QARGNGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVC 682
             ARG+GP V+MTRQPT G++K GG+RVGEMERDCLIAYGASMLI+ERLM+SSDPFEVQVC
Sbjct: 1049 HARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVC 1108

Query: 681  RKCGLLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 514
            R CGLLGYYNYKLK  +CS+CKNG+N++T+KLPYACKLL QELQSMN+VPRLKLVE
Sbjct: 1109 RACGLLGYYNYKLKKAVCSTCKNGDNIATMKLPYACKLLFQELQSMNVVPRLKLVE 1164


>ref|XP_006494574.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X3 [Citrus sinensis]
          Length = 1058

 Score = 1748 bits (4528), Expect = 0.0
 Identities = 851/1058 (80%), Positives = 953/1058 (90%), Gaps = 6/1058 (0%)
 Frame = -3

Query: 3669 VVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIMLRSC 3490
            +  DGV EKLNPH+CRLSD+TY APILV+IEY+ GSH +KTT  KN+VVIGR+PIMLRSC
Sbjct: 1    MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSC 60

Query: 3489 FCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRVNASV 3310
             CVLY KDEA LA+LGECPLDPGGYFIIKGTEKVLLIQEQLSKNR+IIDTDKKG +NASV
Sbjct: 61   RCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASV 120

Query: 3309 MSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRDPRFS 3130
             SSTETVKSKT I +EK K+Y+ LN F  K +PIMVVMKAMG+E+DQEVVQMVGRDPR+S
Sbjct: 121  TSSTETVKSKTVIQMEKGKMYLLLNQFVKK-IPIMVVMKAMGIESDQEVVQMVGRDPRYS 179

Query: 3129 KLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIGHVVVN 2950
             LLLPSIEEC    I +Q+KALE+L+ K+ +       ++++ R    LR+VF+ +V V+
Sbjct: 180  ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVH 239

Query: 2949 QNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFKTMIGE 2770
             NN RPKC Y AVM+RRM+EA++NKD MDDKDYVGNKRLELSGQ+VSLLFEDLFKTMI E
Sbjct: 240  NNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISE 299

Query: 2769 VIKTMDAILAKPSRSSRLDPSQLIARNNITAGLERTLSTGQFDIKRFRLHRSGMTQPLVR 2590
            V KT+D IL+KPSRSSR D SQ I R++IT GLERTLSTG FD+KRF++HR GMTQ L R
Sbjct: 300  VQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLAR 359

Query: 2589 LSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 2410
            LSFIG+LGHMT++ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV
Sbjct: 360  LSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 419

Query: 2409 TTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFANALRKL 2230
            TTDEEEGPL+S+CYCLGVEDLELLSGEELH PNSFL++FNGLILGKHRRP+ FA+ +RKL
Sbjct: 420  TTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKL 479

Query: 2229 RRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDGVRTFD 2050
            RRAGKIGEFVSV+VNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHM+ELLDGVR+FD
Sbjct: 480  RRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFD 539

Query: 2049 DFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGVIAGLIPFPHHNQSPR 1870
            DFLREGLIEYLDVNEENNALIALYEG+AT DTTHIEIEP TILGVIAGLIP+PHHNQSPR
Sbjct: 540  DFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPR 599

Query: 1869 NTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVA 1690
            NTYQCAMGKQAMGNIA+NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVA
Sbjct: 600  NTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVA 659

Query: 1689 VMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTSDRILRPQRDN---DK 1519
            VMSYSGYDIEDAIV NK+ LDRGFGRCIV+KK   +N+KY N+TSDRILRP R     ++
Sbjct: 660  VMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER 719

Query: 1518 MQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVR---GVECQYKSTFQKFKGPEGET 1348
            MQILDDDG+AAPGEII+ ND+Y+NK+SP+ TR +++      + +Y+S  Q +KGP+GET
Sbjct: 720  MQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGET 779

Query: 1347 CVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSEKGI 1168
            CVVDRVALCSD+N +LCI F+IRHTRRPE+GDKFSSRHGQKGVCGTI+QQEDFPFSE+GI
Sbjct: 780  CVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGI 839

Query: 1167 CPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSGHADKVEVISKSLVD 988
            CPDLIMNPHGFPSRMTVGKMIELLGGKAGVS GRFHYGSAFGEPSGHAD VE IS++LV 
Sbjct: 840  CPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVK 899

Query: 987  HGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARGNGPHVLMTRQPTSG 808
            HGFSY+GKD IYSGITGCPLQ YIFMGPIYYQKLKHMVLDKM ARG+GP V++TRQPT G
Sbjct: 900  HGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEG 959

Query: 807  RAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCGLLGYYNYKLKAGIC 628
            RA+ GG+RVGEMERDCLIAYGASMLIFERLM+SSDPFEVQVCR CGLLGYYN+KLKAGIC
Sbjct: 960  RARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGIC 1019

Query: 627  SSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 514
            S+CKNG+N+S++KLPYACKLLIQELQSMNIVPRLKL E
Sbjct: 1020 STCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1057


>ref|XP_006279912.1| hypothetical protein CARUB_v10025768mg [Capsella rubella]
            gi|482548616|gb|EOA12810.1| hypothetical protein
            CARUB_v10025768mg [Capsella rubella]
          Length = 1160

 Score = 1747 bits (4525), Expect = 0.0
 Identities = 863/1171 (73%), Positives = 1001/1171 (85%), Gaps = 17/1171 (1%)
 Frame = -3

Query: 3975 MGIQPDNADDSVKEKGKNKFPPSSLKHSDIAQPFKPPPAVNKFQLVPEFLKVRGLVKQHL 3796
            MG+  ++ D +  +   NK          ++ P K     +KFQLVPEFLKVRGLVKQHL
Sbjct: 1    MGLDQEDLDSTNDDNFINK--------EKLSAPIKS--TADKFQLVPEFLKVRGLVKQHL 50

Query: 3795 DSFNYFVNIGIKKIVRANQRIESRVDKSIYLRFKDIRIGEPSVVADGVEEKLNPHLCRLS 3616
            DSFNY +N+GIKKIV+AN  I S  D SIYLRFK +R+GEPS++   + E++NPH+CRL+
Sbjct: 51   DSFNYLINVGIKKIVKANCLITSTADPSIYLRFKAVRVGEPSILNINMAEQINPHMCRLA 110

Query: 3615 DITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIMLRSCFCVLYQKDEAALAKLGEC 3436
            D+TY API V+IEY+HGSH +K T+ KNNV+IGR+PIMLRSC CVL  KDE  LA+LGEC
Sbjct: 111  DMTYAAPIHVNIEYVHGSHGEKQTSAKNNVLIGRMPIMLRSCRCVLNGKDEDELARLGEC 170

Query: 3435 PLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRVNASVMSSTETVKSKTNIFIEKE 3256
            PLDPGGYF+IKGTEKVLLIQEQLSKNRIIID+DKKG +NASV SSTE  KSKT I +EKE
Sbjct: 171  PLDPGGYFVIKGTEKVLLIQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKE 230

Query: 3255 KIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRDPRFSKLLLPSIEECRAHGIDSQ 3076
            +IY+ L+ F  K +PI++V+KAMGME+DQE+VQMVGRDPRFS  LLPSIEEC + G+++Q
Sbjct: 231  RIYLFLHQFVKK-IPIIIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQ 289

Query: 3075 QKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIGHVVVNQNNLRPKCLYAAVMIRRM 2896
            ++AL++L+ K+ K  +YG   +KD R +  LR++F+ HV V  NN R KC Y  VM+RRM
Sbjct: 290  KQALDYLEAKVKK-TSYGPPLQKDGRALYILRDLFLAHVPVRDNNFRQKCFYVGVMLRRM 348

Query: 2895 MEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFKTMIGEVIKTMDAILAKPSRSSRL 2716
            +EA++NKD MDDKDYVGNKRLELSGQ++SLLFEDLFKTMI E IK +D IL K +R+SR 
Sbjct: 349  IEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEAIKKVDVILTKQNRASRF 408

Query: 2715 DPSQLIARNNITAGLERTLSTGQFDIKRFRLHRSGMTQPLVRLSFIGSLGHMTKIQPQFE 2536
            D SQ ++ + I+ GLERTLSTG FDIKRFR+HR GMTQ L RLSFIGSLG +TKI PQFE
Sbjct: 409  DFSQCLSGDIISLGLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIGSLGFITKISPQFE 468

Query: 2535 KSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLVSVCYCLGV 2356
            KSRKVSGPR+LQPSQWGMLCPCDTPEGE+CGLVKNLALMTHVTTDEEEGPLV++CY LGV
Sbjct: 469  KSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGV 528

Query: 2355 EDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFANALRKLRRAGKIGEFVSVYVNEKQ 2176
             DLE+LS EELHTP+SFL++ NGLILGKHRRPQ FAN+LR+LRRAGKIGEFVSV+ NEKQ
Sbjct: 529  TDLEVLSAEELHTPDSFLVILNGLILGKHRRPQYFANSLRRLRRAGKIGEFVSVFTNEKQ 588

Query: 2175 RCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDGVRTFDDFLREGLIEYLDVNEENN 1996
             CVY+ASDGGRVCRPLVIADKGISR+K+HHM+EL DGVRTFDDF+R+GLIEYLDVNEENN
Sbjct: 589  HCVYVASDGGRVCRPLVIADKGISRVKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENN 648

Query: 1995 ALIALYEGEAT-------------RDTTHIEIEPLTILGVIAGLIPFPHHNQSPRNTYQC 1855
            ALIALYE +AT              DTTHIEIEP TILGV+AGLIP+PHHNQSPRNTYQC
Sbjct: 649  ALIALYESDATTELDEGGEAAKIRADTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQC 708

Query: 1854 AMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYS 1675
            AMGKQAMGNIAYNQL RMD+LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYS
Sbjct: 709  AMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYS 768

Query: 1674 GYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTSDRILRPQR---DNDKMQILD 1504
            GYDIEDAIV NK+ LDRGFGRCIVMKK+   ++KY+NNT DRILRPQR   D +KMQILD
Sbjct: 769  GYDIEDAIVMNKSSLDRGFGRCIVMKKIVATSQKYDNNTQDRILRPQRTGPDAEKMQILD 828

Query: 1503 DDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRGV-ECQYKSTFQKFKGPEGETCVVDRVA 1327
            +DGIA+PGEIIR ND+Y+NKQSPV+T++ +   + + QY+   + FKGPEGET VVDRVA
Sbjct: 829  NDGIASPGEIIRPNDVYINKQSPVDTKNKMTTQLSDSQYRPAREYFKGPEGETQVVDRVA 888

Query: 1326 LCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSEKGICPDLIMN 1147
            LCS+++++LCI ++IRHTRRPE+GDKFSSRHGQKGVCGTIIQQEDFPFSE GICPDLIMN
Sbjct: 889  LCSNKHDHLCIKYIIRHTRRPELGDKFSSRHGQKGVCGTIIQQEDFPFSELGICPDLIMN 948

Query: 1146 PHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSGHADKVEVISKSLVDHGFSYSG 967
            PHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFGE  GHADKVE IS +LV+ GFSYSG
Sbjct: 949  PHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGERGGHADKVETISATLVNKGFSYSG 1008

Query: 966  KDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARGNGPHVLMTRQPTSGRAKAGGM 787
            KD +YSGI+G PLQ YIFMGPIYYQKLKHMVLDKM ARG+GP V+MTRQPT G++K GG+
Sbjct: 1009 KDLLYSGISGEPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGL 1068

Query: 786  RVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCGLLGYYNYKLKAGICSSCKNGE 607
            RVGEMERDCLIAYGASMLI+ERLM+SSDPFEVQVCR CGLLGYY+YKLK   CS+CKNG+
Sbjct: 1069 RVGEMERDCLIAYGASMLIYERLMVSSDPFEVQVCRACGLLGYYSYKLKKAFCSTCKNGD 1128

Query: 606  NVSTLKLPYACKLLIQELQSMNIVPRLKLVE 514
            N++T+KLPYACKLL QELQSMN+VPRLKL+E
Sbjct: 1129 NIATMKLPYACKLLFQELQSMNVVPRLKLIE 1159


>ref|NP_199327.4| DNA-directed RNA polymerase RPC2 [Arabidopsis thaliana]
            gi|332007826|gb|AED95209.1| DNA-directed RNA polymerase
            RPC2 [Arabidopsis thaliana]
          Length = 1161

 Score = 1732 bits (4485), Expect = 0.0
 Identities = 852/1132 (75%), Positives = 976/1132 (86%), Gaps = 18/1132 (1%)
 Frame = -3

Query: 3855 NKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSIYLRFKDIRIGE 3676
            +KFQLVPEFLKVRGLVKQHLDSFNYF+N+GI KIV+AN RI S VD SIYLRFK +R+GE
Sbjct: 31   DKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRITSTVDPSIYLRFKKVRVGE 90

Query: 3675 PSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIMLR 3496
            PS++     E +NPH+CRL+D+TY API V+IEY+HGSH  K  + K+NV+IGR+PIMLR
Sbjct: 91   PSIINVNTVENINPHMCRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIMLR 150

Query: 3495 SCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRVNA 3316
            SC CVL+ KDE  LA+LGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIID+DKKG +NA
Sbjct: 151  SCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDSDKKGNINA 210

Query: 3315 SVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRDPR 3136
            SV SSTE  KSKT I +EKEKIY+ L+ F  K +PI++V+KAMGME+DQE+VQMVGRDPR
Sbjct: 211  SVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKK-IPIIIVLKAMGMESDQEIVQMVGRDPR 269

Query: 3135 FSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIGHVV 2956
            FS  LLPSIEEC + G+++Q++AL++L+ K+ K  +YG   EKD R +  LR++F+ HV 
Sbjct: 270  FSASLLPSIEECVSEGVNTQKQALDYLEAKVKK-ISYGTPPEKDGRALSILRDLFLAHVP 328

Query: 2955 VNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFKTMI 2776
            V  NN R KC Y  VM+RRM+EA++NKD MDDKDYVGNKRLELSGQ++SLLFEDLFKTM+
Sbjct: 329  VPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTML 388

Query: 2775 GEVIKTMDAILAKPSRSSRLDPSQLI---ARNNITAGLERTLSTGQFDIKRFRLHRSGMT 2605
             E IK +D IL KP R+SR D SQ +   +R +I+ GLERTLSTG FDIKRFR+HR GMT
Sbjct: 389  SEAIKNVDHILNKPIRASRFDFSQCLNKDSRYSISLGLERTLSTGNFDIKRFRMHRKGMT 448

Query: 2604 QPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 2425
            Q L RLSFIGS+G +TKI PQFEKSRKVSGPR+LQPSQWGMLCPCDTPEGE+CGLVKNLA
Sbjct: 449  QVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLA 508

Query: 2424 LMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFAN 2245
            LMTHVTTDEEEGPLV++CY LGV DLE+LS EELHTP+SFL++ NGLILGKH RPQ FAN
Sbjct: 509  LMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILGKHSRPQYFAN 568

Query: 2244 ALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDG 2065
            +LR+LRRAGKIGEFVSV+ NEKQ CVY+ASD GRVCRPLVIADKGISR+K+HHM+EL DG
Sbjct: 569  SLRRLRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDG 628

Query: 2064 VRTFDDFLREGLIEYLDVNEENNALIALYEGEATR-----------DTTHIEIEPLTILG 1918
            VRTFDDF+R+GLIEYLDVNEENNALIALYE + T            DTTHIEIEP TILG
Sbjct: 629  VRTFDDFIRDGLIEYLDVNEENNALIALYESDGTTELDEGAEAAKADTTHIEIEPFTILG 688

Query: 1917 VIAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIE 1738
            V+AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD+LLYLLVYPQRPLLTTRTIE
Sbjct: 689  VVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIE 748

Query: 1737 LVGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNT 1558
            LVGYDKLGAGQNATVAVMS+SGYDIEDAIV NK+ LDRGFGRCIVMKK+  +++KY+N T
Sbjct: 749  LVGYDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCT 808

Query: 1557 SDRILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRGV-ECQY 1390
            +DRIL PQR   D +KMQILDDDG+A PGEIIR NDIY+NKQ PV+T       + + QY
Sbjct: 809  ADRILIPQRTGPDAEKMQILDDDGLATPGEIIRPNDIYINKQVPVDTVTKFTSALSDSQY 868

Query: 1389 KSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGT 1210
            +   + FKGPEGET VVDRVALCSD+   LCI ++IRHTRRPE+GDKFSSRHGQKGVCG 
Sbjct: 869  RPAREYFKGPEGETQVVDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGI 928

Query: 1209 IIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSG 1030
            IIQQEDFPFSE GICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFGE SG
Sbjct: 929  IIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGERSG 988

Query: 1029 HADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARG 850
            HADKVE IS +LV+ GFSYSGKD +YSGI+G P++ YIFMGPIYYQKLKHMVLDKM ARG
Sbjct: 989  HADKVETISATLVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARG 1048

Query: 849  NGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCG 670
            +GP V+MTRQPT G++K GG+RVGEMERDCLIAYGASMLI+ERLM+SSDPFEVQVCR CG
Sbjct: 1049 SGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRACG 1108

Query: 669  LLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 514
            LLGYYNYKLK  +C++CKNG+N++T+KLPYACKLL QELQSMN+VPRLKL E
Sbjct: 1109 LLGYYNYKLKKAVCTTCKNGDNIATMKLPYACKLLFQELQSMNVVPRLKLTE 1160


>ref|XP_007010805.1| DNA-directed RNA polymerase isoform 7 [Theobroma cacao]
            gi|508727718|gb|EOY19615.1| DNA-directed RNA polymerase
            isoform 7 [Theobroma cacao]
          Length = 1082

 Score = 1719 bits (4453), Expect = 0.0
 Identities = 849/1079 (78%), Positives = 943/1079 (87%), Gaps = 30/1079 (2%)
 Frame = -3

Query: 3660 DGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIMLRSCFCV 3481
            + V EK+NPH CRLSD+TY API V+IEYI GSH QKT   KN++VIGR+PIMLRSC CV
Sbjct: 4    NAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCV 63

Query: 3480 LYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRVNASVMSS 3301
            LY KDEA LA+LGECPLDPGGYF+IKG EKV+LIQEQLSKNRIIID DKKG +NASV SS
Sbjct: 64   LYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSS 123

Query: 3300 TETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRDPRFSKLL 3121
            +E  KSKT I +EKEKIY+ LN F  K +PIMVVMKAMGME+DQEVVQMVGRDP ++ +L
Sbjct: 124  SEATKSKTVIQMEKEKIYLLLNQFVKK-IPIMVVMKAMGMESDQEVVQMVGRDPHYNAVL 182

Query: 3120 LPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIGHVVVNQNN 2941
            LPSIEEC   GI +Q++ALE+L+ K+ +    G +SEK+ R +  LR+VF+ +V V  NN
Sbjct: 183  LPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNN 242

Query: 2940 LRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFKTMIGEVIK 2761
             RPKCLY AVM+RRM+EAI+NKD MDDKDYVGNKRLELSGQ++SLLFEDLFKT I EV K
Sbjct: 243  FRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQK 302

Query: 2760 TMDAILAKPSRSSRLDPSQLI-ARNNITAGLERTLSTGQFDIKRFRLHRSGMTQPLVRLS 2584
             +D +L+KPSRSS LDPSQ + +R  IT GLERTLSTG FDIKRF++HR GMTQ L RLS
Sbjct: 303  MIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKRFKMHRKGMTQVLARLS 362

Query: 2583 FIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT 2404
            FIG+LG+MTK+ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT
Sbjct: 363  FIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT 422

Query: 2403 DEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFANALRKLRR 2224
            DE+EGPL+S+CYCLGVEDLELLSGEELHTPNSFL++ NGLILGKHRRPQ FA A+RKLRR
Sbjct: 423  DEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGKHRRPQHFAVAMRKLRR 482

Query: 2223 AGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDGVRTFDDF 2044
            AGK+GEFVSV+VNEKQRCVYIASDGGRVCRPLVIADKG+SRIKEHHM+ELLDGVRTFDDF
Sbjct: 483  AGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELLDGVRTFDDF 542

Query: 2043 LREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGVIAGLIPFPHHNQSPRNT 1864
            LR+GLIEYLDVNEENNALIALYEGEAT +TTHIEIEP TILGV AGLIP+PHHNQSPRNT
Sbjct: 543  LRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVCAGLIPYPHHNQSPRNT 602

Query: 1863 YQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIEL----------------- 1735
            YQCAMGKQAMGNIAYNQLCRMD+LLYLLVYPQRPLLTTRTIEL                 
Sbjct: 603  YQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELVSGLYVVDYSTPFCPVN 662

Query: 1734 ------VGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEK 1573
                  VGYDKLGAGQNATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIVMK+   VN+K
Sbjct: 663  CLLCFQVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQK 722

Query: 1572 YENNTSDRILRPQR---DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRG- 1405
            YE   SDRILRPQR    +++MQILDDDGIA PGEIIR NDIY+NK+S ++TR + V   
Sbjct: 723  YETGASDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSE 782

Query: 1404 --VECQYKSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHG 1231
               +  Y+   Q +KGPEGE+CVVDRVALC+DRN+NL I F+IRHTRRPEVGDKFSSRHG
Sbjct: 783  SLPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHG 842

Query: 1230 QKGVCGTIIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGS 1051
            QKGVCGTIIQQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS GRFHYGS
Sbjct: 843  QKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 902

Query: 1050 AFGEPSGHADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVL 871
            AFGEPSGHAD+VE IS++L+ HGFSY+GKDFIYSGITGCPLQ YIFMGPIYYQKLKHMVL
Sbjct: 903  AFGEPSGHADRVEAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVL 962

Query: 870  DKMQARGNGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEV 691
            DKM ARGNGP V++TRQPT GRA+ GG+RVGEMERDCLIAYGASMLIFERLM+SSDPFEV
Sbjct: 963  DKMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEV 1022

Query: 690  QVCRKCGLLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 514
            QVCRKCGLLGYY++KLK GICSSCKNG+NVST+KLPYACKLLIQELQSMNIVPRLKL E
Sbjct: 1023 QVCRKCGLLGYYSHKLKTGICSSCKNGDNVSTMKLPYACKLLIQELQSMNIVPRLKLSE 1081


>ref|XP_006583557.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like isoform
            X1 [Glycine max]
          Length = 1165

 Score = 1717 bits (4447), Expect = 0.0
 Identities = 859/1167 (73%), Positives = 977/1167 (83%), Gaps = 13/1167 (1%)
 Frame = -3

Query: 3975 MGIQPDNADDSVKE-KGKNKFPPSSLKHSDIAQPFKPPP---AVNKFQLVPEFLKVRGLV 3808
            MG++ D   +   +  G NK P      S   Q     P   AV+KFQL+PEFLKVRGLV
Sbjct: 1    MGLKHDPLQNPPNQFNGGNKLPGDHCGDSGFDQRVLTAPIKSAVDKFQLLPEFLKVRGLV 60

Query: 3807 KQHLDSFNYFVNIGIKKIVRANQRIESRVDKSIYLRFKDIRIGEPSVVADGVEEKLNPHL 3628
            KQHLDSFNYFV   IKKIVRAN  I +     IYLRF ++ IG+PS++ D V E L P  
Sbjct: 61   KQHLDSFNYFVRTDIKKIVRANDLIVASRYPHIYLRFLNVGIGKPSIMIDEVTEDLTPQT 120

Query: 3627 CRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIMLRSCFCVLYQKDEAALAK 3448
            CRLSD+TY API  D+EY  GSH +     K  V IGR+PIMLRSC CVL+ +DEA LAK
Sbjct: 121  CRLSDLTYAAPICADVEYTLGSHDKPDIKRKLKVEIGRMPIMLRSCCCVLHGRDEAELAK 180

Query: 3447 LGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRVNASVMSSTETVKSKTNIF 3268
            LGECPLDPGGYF+IKGTEKV+LIQEQLSKNRIIIDTDKKG + ASV SSTE +K+KT + 
Sbjct: 181  LGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDKKGNITASVTSSTEKIKTKTVVV 240

Query: 3267 IEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRDPRFSKLLLPSIEECRAHG 3088
            +EKEK+++QLN F  K VP+MVVMKAMGME+DQEV QMVGRDPR+S LLLPSIEEC    
Sbjct: 241  MEKEKLWLQLNKFPKK-VPLMVVMKAMGMESDQEVTQMVGRDPRYSFLLLPSIEECTKCK 299

Query: 3087 IDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIGHVVVNQNNLRPKCLYAAVM 2908
            + ++++ALE+LD+ + +      ++EK+     ALR+VF+ +V V+Q+N RPKC+Y AVM
Sbjct: 300  VYTREQALEYLDKLVKRPTYSNNAAEKEGAAFSALRDVFLANVPVDQDNFRPKCIYVAVM 359

Query: 2907 IRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFKTMIGEVIKTMDAILAKPSR 2728
            +RR+M+AI+NKD MDDKDYVGNKRLELSGQ++SLLFEDLFK+M  EV    D +L KP +
Sbjct: 360  MRRIMDAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKSMTTEVKNLTDKMLEKPDK 419

Query: 2727 SSRLDPSQLIARNN--ITAGLERTLSTGQFDIKRFRLHRSGMTQPLVRLSFIGSLGHMTK 2554
            +   D   L+ R    IT GLERTLSTG F+IKRFR+ R GMTQ L RLSFIG+LGHMT+
Sbjct: 420  AKNFDICTLLTRTRSIITLGLERTLSTGNFEIKRFRMERKGMTQVLQRLSFIGALGHMTR 479

Query: 2553 IQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLVSV 2374
            + PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE+CGLVKNLALMTHVTTDEEE PL+S+
Sbjct: 480  VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEKPLISL 539

Query: 2373 CYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFANALRKLRRAGKIGEFVSV 2194
            C  LGVED++ LS EELHTP+SFL++FNGLILGKHRRP  FA A+RKLRRAGKIGEFVSV
Sbjct: 540  CESLGVEDMKDLSAEELHTPDSFLVIFNGLILGKHRRPLHFATAIRKLRRAGKIGEFVSV 599

Query: 2193 YVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDGVRTFDDFLREGLIEYLD 2014
            YVNEKQ CVY+ASDGGRVCRPLVIADKGISRIK+HHM+EL+DGVRTFDDFLR+GL+EYLD
Sbjct: 600  YVNEKQHCVYLASDGGRVCRPLVIADKGISRIKQHHMKELMDGVRTFDDFLRDGLLEYLD 659

Query: 2013 VNEENNALIALYEGEATRDTTHIEIEPLTILGVIAGLIPFPHHNQSPRNTYQCAMGKQAM 1834
            VNEENNALIALYEG+AT +TTHIEIEP TILGVIAGLIP+PHHNQSPRNTYQCAMGKQAM
Sbjct: 660  VNEENNALIALYEGDATSETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 719

Query: 1833 GNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDA 1654
            GNIA+NQL RMDSLLYLLVYPQRPLLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDA
Sbjct: 720  GNIAFNQLRRMDSLLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDA 779

Query: 1653 IVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTSDRILRPQRDND---KMQILDDDGIAAP 1483
            IV NKA LDRGFGRCIVMKK   + +K+ N+TSDRILRP R  D   +MQILDDDGIAAP
Sbjct: 780  IVMNKASLDRGFGRCIVMKKYNAIIQKHSNDTSDRILRPNRTADTAGRMQILDDDGIAAP 839

Query: 1482 GEIIRTNDIYLNKQSPVNTR----DTVVRGVECQYKSTFQKFKGPEGETCVVDRVALCSD 1315
            GEI+R  DIY+NKQSP++TR     +     +  Y+S  Q FKG  GE  VVDRV LCSD
Sbjct: 840  GEILRPYDIYINKQSPIDTRTPKTGSAANLPDSAYRSNAQSFKGNGGE--VVDRVVLCSD 897

Query: 1314 RNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSEKGICPDLIMNPHGF 1135
            ++NN+CI F+IRHTRRPE+GDKFSSRHGQKGVCGTI+ QEDFPFSEKGICPDLIMNPHGF
Sbjct: 898  KDNNMCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVPQEDFPFSEKGICPDLIMNPHGF 957

Query: 1134 PSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSGHADKVEVISKSLVDHGFSYSGKDFI 955
            PSRMTVGKMIELLGGKAGVS GRFHYGSAFGE SGHADKVE IS++LV  GF+YSGKDFI
Sbjct: 958  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGERSGHADKVETISETLVSKGFNYSGKDFI 1017

Query: 954  YSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARGNGPHVLMTRQPTSGRAKAGGMRVGE 775
            YSGITGCPLQ YIFMGPIYYQKLKHMVLDKM ARG+GP V++TRQPT GRA+ GG+RVGE
Sbjct: 1018 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGE 1077

Query: 774  MERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCGLLGYYNYKLKAGICSSCKNGENVST 595
            MERDCLIAYGASMLI+ERLMLSSDPFEVQVC  CGLLGYYN+KLK GICSSCKNG+N+ST
Sbjct: 1078 MERDCLIAYGASMLIYERLMLSSDPFEVQVCTACGLLGYYNHKLKTGICSSCKNGDNIST 1137

Query: 594  LKLPYACKLLIQELQSMNIVPRLKLVE 514
            +KLPYACKL+IQELQSMNIVPRLKL +
Sbjct: 1138 MKLPYACKLMIQELQSMNIVPRLKLAD 1164


>dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 1194

 Score = 1706 bits (4418), Expect = 0.0
 Identities = 838/1119 (74%), Positives = 967/1119 (86%), Gaps = 7/1119 (0%)
 Frame = -3

Query: 3855 NKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSIYLRFKDIRIGE 3676
            +KFQLVPEFLKVRGLVKQHLDSFNYF+N+GI KIV+AN RI S VD SIYLRFK +R+GE
Sbjct: 52   DKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRITSTVDPSIYLRFKKVRVGE 111

Query: 3675 PSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPIMLR 3496
            PS++     E +NPH+CRL+D+TY API V+IEY+HGSH  K  + K+NV+IGR+PIMLR
Sbjct: 112  PSIINVNTVENINPHMCRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIMLR 171

Query: 3495 SCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGRVNA 3316
            SC CVL+ KDE  LA+LGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIID+DKKG +NA
Sbjct: 172  SCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDSDKKGNINA 231

Query: 3315 SVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGRDPR 3136
            SV SSTE  KSKT I +EKEKIY+ L+ F  K +PI++V+KAMGME+DQE+VQMVGRDPR
Sbjct: 232  SVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKK-IPIIIVLKAMGMESDQEIVQMVGRDPR 290

Query: 3135 FSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIGHVV 2956
            FS  LLPSIEEC + G+++Q++AL++L+ K+ K  +YG   EKD R +  LR++F+ HV 
Sbjct: 291  FSASLLPSIEECVSEGVNTQKQALDYLEAKVKK-ISYGTPPEKDGRALSILRDLFLAHVP 349

Query: 2955 VNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFKTMI 2776
            V  NN R KC Y  VM+RRM+EA++NKD MDDKDYVGNKRLELSGQ++SLLFEDLFKTM+
Sbjct: 350  VPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTML 409

Query: 2775 GEVIKTMDAILAKPSRSSRLDPSQLI---ARNNITAGLERTLSTGQFDIKRFRLHRSGMT 2605
             E IK +D IL KP R+SR D SQ +   +R +I+ GLERTLSTG FDIKRFR+HR GMT
Sbjct: 410  SEAIKNVDHILNKPIRASRFDFSQCLNKDSRYSISLGLERTLSTGNFDIKRFRMHRKGMT 469

Query: 2604 QPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 2425
            Q L RLSFIGS+G +TKI PQFEKSRKVSGPR+LQPSQWGMLCPCDTPEGE+CGLVKNLA
Sbjct: 470  QVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLA 529

Query: 2424 LMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFAN 2245
            LMTHVTTDEEEGPLV++CY LGV DLE+LS EELHTP+SFL++ NGLILGKH RPQ FAN
Sbjct: 530  LMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILGKHSRPQYFAN 589

Query: 2244 ALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDG 2065
            +LR+LRRAGKIGEFVSV+ NEKQ CVY+ASD GRVCRPLVIADKGISR+K+HHM+EL DG
Sbjct: 590  SLRRLRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDG 649

Query: 2064 VRTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGVIAGLIPFPHH 1885
            VRTFDDF+R+GLIEYLDVNEENNAL+ L    A  DTTHIEIEP TILGV+AGLIP+PHH
Sbjct: 650  VRTFDDFIRDGLIEYLDVNEENNALVCLRAEAAKADTTHIEIEPFTILGVVAGLIPYPHH 709

Query: 1884 NQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 1705
            NQSPRNTYQCAMGKQAMGNIAYNQL RMD+LLYLLVYPQRPLLTTRTIELVGYDKLGAGQ
Sbjct: 710  NQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 769

Query: 1704 NATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTSDRILRPQR-- 1531
            NATVAVMS+SGYDIEDAIV NK+ LDRGFGRCIVMKK+  +++KY+N T+DRIL PQR  
Sbjct: 770  NATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADRILIPQRTG 829

Query: 1530 -DNDKMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRGV-ECQYKSTFQKFKGPE 1357
             D +KMQILDDDG+A PGEIIR NDIY+NKQ PV+T       + + QY+   + FKGPE
Sbjct: 830  PDAEKMQILDDDGLATPGEIIRPNDIYINKQVPVDTVTKFTSALSDSQYRPAREYFKGPE 889

Query: 1356 GETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSE 1177
            GET VVDRVALCSD+   LCI ++IRHTRRPE+GDKFSSRHGQKGVCG IIQQEDFPFSE
Sbjct: 890  GETQVVDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSE 949

Query: 1176 KGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSGHADKVEVISKS 997
             GICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFGE SGHADKVE IS +
Sbjct: 950  LGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGERSGHADKVETISAT 1009

Query: 996  LVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARGNGPHVLMTRQP 817
            LV+ GFSYSGKD +YSGI+G P++ YIFMGPIYYQKLKHMVLDKM ARG+GP V+MTRQP
Sbjct: 1010 LVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQP 1069

Query: 816  TSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCGLLGYYNYKLKA 637
            T G++K GG+RVGEMERDCLIAYGASMLI+ERLM+SSDPFEVQVCR CGLLGYYNYKLK 
Sbjct: 1070 TEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRACGLLGYYNYKLKK 1129

Query: 636  GICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKL 520
             +C++CKNG+N++T+KLPYACKLL Q ++++ +  +LKL
Sbjct: 1130 AVCTTCKNGDNIATMKLPYACKLLFQ-VKTIGLFFKLKL 1167


>ref|XP_007152964.1| hypothetical protein PHAVU_004G175000g [Phaseolus vulgaris]
            gi|561026273|gb|ESW24958.1| hypothetical protein
            PHAVU_004G175000g [Phaseolus vulgaris]
          Length = 1161

 Score = 1702 bits (4407), Expect = 0.0
 Identities = 849/1154 (73%), Positives = 969/1154 (83%), Gaps = 10/1154 (0%)
 Frame = -3

Query: 3945 SVKEKGKNKFPPSS-LKHSDIAQPFKPPPAVNKFQLVPEFLKVRGLVKQHLDSFNYFVNI 3769
            + +  G NK P  S      +  P K   AV+KFQL+PEFLKVRGLVKQHLDSFNYFV  
Sbjct: 12   TTESNGGNKKPDDSGFDQRILTAPIKS--AVDKFQLLPEFLKVRGLVKQHLDSFNYFVRT 69

Query: 3768 GIKKIVRANQRIESRVDKSIYLRFKDIRIGEPSVVADGVEEKLNPHLCRLSDITYGAPIL 3589
             IKKIVRAN  I +     IYLRF +++I +P ++ + V + + P  CRLSD TY API 
Sbjct: 70   EIKKIVRANNLISATRHPHIYLRFLNVKIRKPCIMDESVTDDVTPQTCRLSDQTYAAPIC 129

Query: 3588 VDIEYIHGSHIQKTTAHKNNVVIGRLPIMLRSCFCVLYQKDEAALAKLGECPLDPGGYFI 3409
            VD+EY HGS        + NV IGR+PIMLRSC CVLY +D+A LAKLGECPLDPGGYF+
Sbjct: 130  VDVEYTHGSRDDPRLHKRLNVEIGRMPIMLRSCCCVLYGRDQAELAKLGECPLDPGGYFV 189

Query: 3408 IKGTEKVLLIQEQLSKNRIIIDTDKKGRVNASVMSSTETVKSKTNIFIEKEKIYVQLNIF 3229
            +KGTEKV+LIQEQLSKNRIIIDTDKKG + ASV SSTE +K+KT I +E EK+++ LN F
Sbjct: 190  VKGTEKVILIQEQLSKNRIIIDTDKKGNIAASVTSSTEKIKTKTIIVMENEKLWLHLNQF 249

Query: 3228 GNKGVPIMVVMKAMGMENDQEVVQMVGRDPRFSKLLLPSIEECRAHGIDSQQKALEFLDR 3049
              K VP+M VMKAMG+E+DQEV QMVGRDPR+S LLLPS EECR   + +Q++ALE+LD+
Sbjct: 250  PKK-VPLMAVMKAMGIESDQEVTQMVGRDPRYSFLLLPSFEECRKCNVYTQEQALEYLDK 308

Query: 3048 KISKGPAYGGSSEKDNRVMKALREVFIGHVVVNQNNLRPKCLYAAVMIRRMMEAIINKDT 2869
             + +      S+EK+ R    LR+VF+ +V V+ +N RPKC+Y AVM+RR+M+AI+NKD 
Sbjct: 309  MVKRSMYSSNSAEKEGRAFSVLRDVFLANVPVDGDNFRPKCIYVAVMMRRIMDAILNKDA 368

Query: 2868 MDDKDYVGNKRLELSGQMVSLLFEDLFKTMIGEVIKTMDAILAKPSRSSRLDPSQLIAR- 2692
            MDDKDYVGNKRLELSGQ++SLLFEDLFK+M  EV    D +L KP ++   D S L+ R 
Sbjct: 369  MDDKDYVGNKRLELSGQLISLLFEDLFKSMATEVKNLTDKMLDKPDKARNFDISTLLNRT 428

Query: 2691 -NNITAGLERTLSTGQFDIKRFRLHRSGMTQPLVRLSFIGSLGHMTKIQPQFEKSRKVSG 2515
             N IT GLERTLSTG F+IKRFR+ R GMTQ L RLSFIG++GHMT++ PQFEKSRKVSG
Sbjct: 429  QNIITLGLERTLSTGNFEIKRFRMERKGMTQVLQRLSFIGAMGHMTRVSPQFEKSRKVSG 488

Query: 2514 PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLVSVCYCLGVEDLELLS 2335
            PRALQPSQWGMLCPCDTPEGE+CGLVKNLALMTHVTTDEEE PL+S+CY LGVEDLELLS
Sbjct: 489  PRALQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEESPLISMCYSLGVEDLELLS 548

Query: 2334 GEELHTPNSFLIVFNGLILGKHRRPQRFANALRKLRRAGKIGEFVSVYVNEKQRCVYIAS 2155
             EELHTP+SFL++ NGLILGKH+RP RFA A+RKLRR GKIGEFVSV+V+EKQ CVY+AS
Sbjct: 549  AEELHTPDSFLVILNGLILGKHKRPLRFATAIRKLRRRGKIGEFVSVFVHEKQNCVYLAS 608

Query: 2154 DGGRVCRPLVIADKGISRIKEHHMRELLDGVRTFDDFLREGLIEYLDVNEENNALIALYE 1975
            DGGRVCRPLVIADKGISRIK+HHM+EL+DGVRTFDDFLR+GL+EYLDVNEENN LIALYE
Sbjct: 609  DGGRVCRPLVIADKGISRIKQHHMKELMDGVRTFDDFLRDGLLEYLDVNEENNTLIALYE 668

Query: 1974 GEATRDTTHIEIEPLTILGVIAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDS 1795
            G+AT +TTHIEIEP TILGVIAGLIP+PHHNQSPRNTYQCAMGKQAMGNIA+NQL RMDS
Sbjct: 669  GDATSETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRMDS 728

Query: 1794 LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVFNKAGLDRGFG 1615
            LLYLLVYPQRPLLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV NKA LDRGFG
Sbjct: 729  LLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFG 788

Query: 1614 RCIVMKKMKVVNEKYENNTSDRILRPQRDND---KMQILDDDGIAAPGEIIRTNDIYLNK 1444
            RCIVMKK   V +K+ N+TSDRILRP R  D   +M+ILDDDGIAAPGEI++  DIY+NK
Sbjct: 789  RCIVMKKYSAVIQKHSNDTSDRILRPNRAADTAGRMRILDDDGIAAPGEILKPFDIYINK 848

Query: 1443 QSPVNTRD--TVVRG--VECQYKSTFQKFKGPEGETCVVDRVALCSDRNNNLCINFMIRH 1276
            QSP++TR   T   G   +  Y+S  Q FKG  GE  VVDRV LCSD++ N+CI F+IRH
Sbjct: 849  QSPIDTRTPRTGAAGNLPDSAYRSNSQSFKGHGGE--VVDRVVLCSDKDKNMCIKFLIRH 906

Query: 1275 TRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELL 1096
            TRRPE+GDKFSSRHGQKGVCGTI+QQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELL
Sbjct: 907  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELL 966

Query: 1095 GGKAGVSNGRFHYGSAFGEPSGHADKVEVISKSLVDHGFSYSGKDFIYSGITGCPLQTYI 916
            GGKAGVS GRFHYGSAFGE SGHADKVE IS++LV  GFSYSGKDFIYSGITGCPLQ YI
Sbjct: 967  GGKAGVSCGRFHYGSAFGERSGHADKVEAISETLVSKGFSYSGKDFIYSGITGCPLQAYI 1026

Query: 915  FMGPIYYQKLKHMVLDKMQARGNGPHVLMTRQPTSGRAKAGGMRVGEMERDCLIAYGASM 736
            FMGPIYYQKLKHMVLDKM ARG+GP V++TRQPT GRA+ GG+RVGEMERDCLIAYGASM
Sbjct: 1027 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1086

Query: 735  LIFERLMLSSDPFEVQVCRKCGLLGYYNYKLKAGICSSCKNGENVSTLKLPYACKLLIQE 556
            LI+ERLMLSSDPFEVQVC  CGLLGYYN+KLK GICS CKNG+ +ST+KLPYACKL+IQE
Sbjct: 1087 LIYERLMLSSDPFEVQVCTACGLLGYYNHKLKTGICSYCKNGDKISTMKLPYACKLMIQE 1146

Query: 555  LQSMNIVPRLKLVE 514
            LQSMNIVPRLKL +
Sbjct: 1147 LQSMNIVPRLKLAD 1160


>ref|XP_004510587.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cicer
            arietinum]
          Length = 1134

 Score = 1699 bits (4400), Expect = 0.0
 Identities = 840/1124 (74%), Positives = 948/1124 (84%), Gaps = 7/1124 (0%)
 Frame = -3

Query: 3864 PAVNKFQLVPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANQRIESRVDKSIYLRFKDIR 3685
            PAV+KFQL+PEFLK RGLVKQHLDSFNYFVN  IKKIVRAN  ++S     IYLRF D+R
Sbjct: 12   PAVDKFQLLPEFLKYRGLVKQHLDSFNYFVNTDIKKIVRANNLVQSSRYPHIYLRFLDVR 71

Query: 3684 IGEPSVVADGVEEKLNPHLCRLSDITYGAPILVDIEYIHGSHIQKTTAHKNNVVIGRLPI 3505
            IG+P  + DG  E ++P  CRLSD TY APILV +EY  GS        KN VVIGR+PI
Sbjct: 72   IGKPERIFDGSSEYVSPQTCRLSDQTYAAPILVSVEYTQGSPDNVIKIPKNKVVIGRMPI 131

Query: 3504 MLRSCFCVLYQKDEAALAKLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDTDKKGR 3325
            MLRSC CVLY +DEA LAKLGECPLDPGGYF+IKGTEKV+LIQEQLSKNRIIIDTDKK  
Sbjct: 132  MLRSCCCVLYNRDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDKKKN 191

Query: 3324 VNASVMSSTETVKSKTNIFIEKEKIYVQLNIFGNKGVPIMVVMKAMGMENDQEVVQMVGR 3145
            + ASV SSTE VK+KT I +E+EK++++LN F  K VP+M+VMKAMGME+D EVVQM+GR
Sbjct: 192  ITASVTSSTEKVKTKTTILMEREKMWLELNQFQTK-VPLMIVMKAMGMESDHEVVQMIGR 250

Query: 3144 DPRFSKLLLPSIEECRAHGIDSQQKALEFLDRKISKGPAYGGSSEKDNRVMKALREVFIG 2965
            DPR+  LLLPSIEEC   G+ +Q +AL +LD K  +        EK+ R    LR+VF+ 
Sbjct: 251  DPRYGLLLLPSIEECNKSGVSTQAQALAYLDSKAKRSMFSTMQPEKEGRAFSILRDVFLA 310

Query: 2964 HVVVNQNNLRPKCLYAAVMIRRMMEAIINKDTMDDKDYVGNKRLELSGQMVSLLFEDLFK 2785
            +V V+++N RPKC+Y AVM+RR+++AI+NKD MDDKDYVGNKRLELSGQ++SLLFEDLFK
Sbjct: 311  NVPVHEDNFRPKCIYVAVMMRRILDAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFK 370

Query: 2784 TMIGEVIKTMDAILAKPSRSSRLDPSQLIARNNITAGLERTLSTGQFDIKRFRLHRSGMT 2605
            TM  E+    D  L KP R+ + D + L+ R+ I+ GLER LSTG FDIKRF++HRSGMT
Sbjct: 371  TMTTELQTLTDKYLEKPDRAKKFDFTTLLNRDYISPGLERYLSTGNFDIKRFKMHRSGMT 430

Query: 2604 QPLVRLSFIGSLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 2425
            Q L RLSFI +LG MT+++PQFEKS+KVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA
Sbjct: 431  QVLQRLSFISALGQMTRVKPQFEKSKKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 490

Query: 2424 LMTHVTTDEEEGPLVSVCYCLGVEDLELLSGEELHTPNSFLIVFNGLILGKHRRPQRFAN 2245
            LMTHVTTD++E PL+S+CY LGVED+E LSGEELHTPNS+L++FNGLILGKHRRPQRFA 
Sbjct: 491  LMTHVTTDDDEAPLISLCYILGVEDIEHLSGEELHTPNSYLVIFNGLILGKHRRPQRFAT 550

Query: 2244 ALRKLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMRELLDG 2065
            A+R LRRAG IGEFVSVY+NEKQ CVY+ASDGGRVCRPLVIADKGISR+K HHM+EL DG
Sbjct: 551  AMRNLRRAGVIGEFVSVYLNEKQCCVYLASDGGRVCRPLVIADKGISRVKAHHMKELKDG 610

Query: 2064 VRTFDDFLREGLIEYLDVNEENNALIALYEGEATRDTTHIEIEPLTILGVIAGLIPFPHH 1885
            V TF+ FLR GLIEYLDVNEENNALIALYEG+AT  TTHIEIEP TILGV AGLIP+PHH
Sbjct: 611  VTTFNHFLRNGLIEYLDVNEENNALIALYEGDATPKTTHIEIEPFTILGVCAGLIPYPHH 670

Query: 1884 NQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 1705
            NQSPRNTYQCAMGKQAMGNIAYNQL RMD+LLYLLVYPQRPLLTT++IELVGYDKLGAGQ
Sbjct: 671  NQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLVYPQRPLLTTKSIELVGYDKLGAGQ 730

Query: 1704 NATVAVMSYSGYDIEDAIVFNKAGLDRGFGRCIVMKKMKVVNEKYENNTSDRILRPQRDN 1525
            NATVAVMSYSGYDIEDAIV NK+ LDRGFGRCIVMK+   + +KY N T DRI+RP R  
Sbjct: 731  NATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYVAIRQKYSNGTEDRIIRPNRAA 790

Query: 1524 D---KMQILDDDGIAAPGEIIRTNDIYLNKQSPVNTRDTVVRGV----ECQYKSTFQKFK 1366
            D   +MQILDDDGIAAPGEIIR ND+Y+NKQSP+ TR T         +  Y+ST Q F 
Sbjct: 791  DTTGRMQILDDDGIAAPGEIIRPNDMYINKQSPIETRATTTGSTAKLPDNAYRSTPQTFN 850

Query: 1365 GPEGETCVVDRVALCSDRNNNLCINFMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFP 1186
               G   VVDRV LC+D++ NLCI F+ RHTRRPE+GDKFSSRHGQKGVCG    QEDFP
Sbjct: 851  KCHGGE-VVDRVVLCNDKDTNLCIKFLTRHTRRPELGDKFSSRHGQKGVCGXXXXQEDFP 909

Query: 1185 FSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSNGRFHYGSAFGEPSGHADKVEVI 1006
            FSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS GRFHYGSAFGE SGHADKVE I
Sbjct: 910  FSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGERSGHADKVETI 969

Query: 1005 SKSLVDHGFSYSGKDFIYSGITGCPLQTYIFMGPIYYQKLKHMVLDKMQARGNGPHVLMT 826
            S++LV HGF+Y+GKDFIYSGITGCPLQ YIFMGPIYYQKLKHMVLDKM ARGNGP  LMT
Sbjct: 970  SETLVKHGFNYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRALMT 1029

Query: 825  RQPTSGRAKAGGMRVGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRKCGLLGYYNYK 646
            RQPT GRA+ GG+RVGEMERDCLIAYGASMLIFERLM+SSDPFEVQVCRKCGLLGYYN+K
Sbjct: 1030 RQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRKCGLLGYYNHK 1089

Query: 645  LKAGICSSCKNGENVSTLKLPYACKLLIQELQSMNIVPRLKLVE 514
            LK GICSSCKNGE +ST+KLPYACKLL+QELQSMNIVPRLKL +
Sbjct: 1090 LKTGICSSCKNGEQISTVKLPYACKLLMQELQSMNIVPRLKLAD 1133