BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00027292
         (903 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_006390091.1| RNA dependent RNA polymerase [Persimmon cryp...   375   e-101
gb|ABU55400.1| RNA-dependent RNA polymerase [Black raspberry cry...   366   8e-99
gb|AEJ07892.1| putative RNA-dependent RNA polymerase [Pepper cry...   334   2e-89
gb|AGQ49482.1| RNA-dependent RNA polymerase [Beet cryptic virus 2]    325   1e-86
gb|ADP24757.1| RNA-dependent RNA polymerase [Beet cryptic virus 2]    325   1e-86
gb|AFO65948.1| RNA-dependent RNA polymerase [Alphacryptovirus JF...   296   1e-77
ref|YP_002364401.1| putative RNA-dependent RNA polymerase [Rapha...   295   2e-77
dbj|BAA34783.1| RNA-dependent RNA polymerase [Pyrus pyrifolia]        294   3e-77
gb|AAB27624.1| putative RNA-dependent RNA polymerase [Beet crypt...   288   3e-75
gb|AGH12859.1| RNA-dependent RNA polymerase [Citrullus lanatus c...   285   2e-74
gb|AEJ07890.1| putative RNA-dependent RNA polymerase [Pepper cry...   284   3e-74
gb|ABC96789.2| RNA-dependent RNA polymerase-like protein [Pepper...   243   6e-62
gb|ADE34113.1| putative RNA-dependent RNA polymerase [Pittosporu...   186   1e-44
ref|YP_004429258.1| RNA-dependent RNA polymerase [Fig cryptic vi...   154   6e-35
ref|YP_001274391.1| RNA-dependent RNA polymerase [Fragaria chilo...   150   5e-34
gb|ABV89762.1| putative RNA-dependent RNA polymerase [Rosa multi...   149   1e-33
ref|YP_001686786.1| RNA-dependent RNA polymerase [Rose cryptic v...   149   1e-33
ref|YP_009026407.1| RNA dependent RNA polymerase [Pigeon pea lat...   148   3e-33
ref|YP_001686783.1| putative RNA dependent RNA polymerse [Raphan...   147   4e-33
gb|AFQ36917.1| putative RNA-dependent RNA polymerase, partial [R...   125   2e-26

>ref|YP_006390091.1| RNA dependent RNA polymerase [Persimmon cryptic virus]
           gi|388877111|emb|CCH50609.1| RNA dependent RNA
           polymerase [Persimmon cryptic virus]
          Length = 477

 Score =  375 bits (963), Expect = e-101
 Identities = 187/271 (69%), Positives = 217/271 (80%)
 Frame = -1

Query: 813 MALRTLREYEFKDFTNDFEDLDETHVHRVRRETGVTYHDQFAMSELQDLYPNLYDQYLSG 634
           MALR++  YEF DF +  E L++TH+H VRRE+GVTYHD+FA+ EL      LY+Q L G
Sbjct: 1   MALRSITGYEFHDFQSSLELLNQTHIHIVRRESGVTYHDEFALCELLVDNTRLYEQELEG 60

Query: 633 WSRSFYTRADHMKAIMQYSISETPINTVNETLYQQAMMAVLERLSSLQRVRAFDVLTQLD 454
           WSRS+YT   HMKAI+QYS+  TPI  ++   YQQAM  V ERLSSL  VRAFDVLTQLD
Sbjct: 61  WSRSYYTGEQHMKAILQYSLPNTPIQDIDVGCYQQAMTNVQERLSSLPIVRAFDVLTQLD 120

Query: 453 LVPFEPSSAAGYDYIGAKGELNGENHQRAIRRAKATLWSALAPDGEGMDHVVRTSVPDVG 274
            V FE SSAAGYDY GAKG  N  NH+RAIRRAKA LWSA+A DGEG++HV+R+SVPDVG
Sbjct: 121 QVSFESSSAAGYDYTGAKGPKNEGNHERAIRRAKAVLWSAIAQDGEGIEHVLRSSVPDVG 180

Query: 273 YTRTQLTLIGEKTKVRGVWGRAFHYILLEGTTAAPLLEAFKQGDTFLHIGHDPTQSVPDL 94
           YTRTQLT + EKTKVRGVWGRAFHYIL EGT+A PLL+AFK+G TF HIG DPT SVP +
Sbjct: 181 YTRTQLTDLSEKTKVRGVWGRAFHYILPEGTSADPLLQAFKEGGTFYHIGQDPTVSVPYI 240

Query: 93  LSRTASQCAWLIALDWTAFDASVSRFEIHAA 1
           LS TA +CAWL ALDW++FDA+VSRFEIHAA
Sbjct: 241 LSDTAGKCAWLYALDWSSFDATVSRFEIHAA 271


>gb|ABU55400.1| RNA-dependent RNA polymerase [Black raspberry cryptic virus]
          Length = 393

 Score =  366 bits (939), Expect = 8e-99
 Identities = 179/271 (66%), Positives = 207/271 (76%)
 Frame = -1

Query: 813 MALRTLREYEFKDFTNDFEDLDETHVHRVRRETGVTYHDQFAMSELQDLYPNLYDQYLSG 634
           MAL+ + +++F DF  D E L E H   +RRE    YHD FA+ EL+  YP LY+QYL G
Sbjct: 1   MALQLVNDHDFIDFQADLEILPENHAQTIRREPNTVYHDDFALRELKSAYPLLYEQYLEG 60

Query: 633 WSRSFYTRADHMKAIMQYSISETPINTVNETLYQQAMMAVLERLSSLQRVRAFDVLTQLD 454
           WSRSFYT+ DHMKAIMQYS    PI  VNE LY QA+ A LERL SL  VRA DVLT LD
Sbjct: 61  WSRSFYTKEDHMKAIMQYSYPNIPIEAVNENLYNQAINATLERLRSLPTVRAIDVLTDLD 120

Query: 453 LVPFEPSSAAGYDYIGAKGELNGENHQRAIRRAKATLWSALAPDGEGMDHVVRTSVPDVG 274
            V FEP+S+AGY Y G KG+  GE H++AIRRAKATLWSA+  + EG+DHV+RT VPDVG
Sbjct: 121 SVSFEPTSSAGYGYNGVKGDSLGEIHKQAIRRAKATLWSAIRTEDEGIDHVIRTFVPDVG 180

Query: 273 YTRTQLTLIGEKTKVRGVWGRAFHYILLEGTTAAPLLEAFKQGDTFLHIGHDPTQSVPDL 94
           YTRTQLT   EKTKVRGVWGR FHYILLEGT A PLL+AFK G TFLHIG DP QSVP+L
Sbjct: 181 YTRTQLTQHREKTKVRGVWGRCFHYILLEGTAAQPLLDAFKAGTTFLHIGQDPKQSVPNL 240

Query: 93  LSRTASQCAWLIALDWTAFDASVSRFEIHAA 1
           LS  ++ C WL+ALDW++FDA+VSRFEIHAA
Sbjct: 241 LSSISNHCKWLMALDWSSFDATVSRFEIHAA 271


>gb|AEJ07892.1| putative RNA-dependent RNA polymerase [Pepper cryptic virus 2]
          Length = 478

 Score =  334 bits (857), Expect = 2e-89
 Identities = 159/268 (59%), Positives = 202/268 (75%)
 Frame = -1

Query: 804 RTLREYEFKDFTNDFEDLDETHVHRVRRETGVTYHDQFAMSELQDLYPNLYDQYLSGWSR 625
           R L  Y F  F ND E LD+ H+H +RRE   TY D+FA+ EL DL P LY+Q+L GWSR
Sbjct: 5   RMLNGYVFTAFGNDLEKLDQRHIHHIRREEATTYRDEFALKELMDLSPILYEQFLEGWSR 64

Query: 624 SFYTRADHMKAIMQYSISETPINTVNETLYQQAMMAVLERLSSLQRVRAFDVLTQLDLVP 445
           S+Y  + H++AI+QY I +     ++  +Y +A   VLE L SL RVRAFDVLT+LD V 
Sbjct: 65  SYYEGSKHLQAIIQYGIPDPDPGLIDNDIYNKAGYVVLESLGSLPRVRAFDVLTELDSVH 124

Query: 444 FEPSSAAGYDYIGAKGELNGENHQRAIRRAKATLWSALAPDGEGMDHVVRTSVPDVGYTR 265
           +E SS+AGYDY G KG + GENH RAI RAKATLWSA+  +GEG++HV+R++VPDVGYTR
Sbjct: 125 YEQSSSAGYDYHGPKGPIQGENHIRAITRAKATLWSAIKDEGEGIEHVIRSAVPDVGYTR 184

Query: 264 TQLTLIGEKTKVRGVWGRAFHYILLEGTTAAPLLEAFKQGDTFLHIGHDPTQSVPDLLSR 85
           TQLT + EKTK+RGVWGRAFHYILLEGT A PLL+ FK+G TF HIG +P  SVPD+LS+
Sbjct: 185 TQLTDLYEKTKIRGVWGRAFHYILLEGTIANPLLDVFKRGGTFYHIGENPQYSVPDILSQ 244

Query: 84  TASQCAWLIALDWTAFDASVSRFEIHAA 1
            +  C +L+A+DW+ FDA+V+RFEI+ A
Sbjct: 245 VSECCKYLVAIDWSNFDATVARFEINMA 272


>gb|AGQ49482.1| RNA-dependent RNA polymerase [Beet cryptic virus 2]
          Length = 475

 Score =  325 bits (833), Expect = 1e-86
 Identities = 159/269 (59%), Positives = 194/269 (72%)
 Frame = -1

Query: 807 LRTLREYEFKDFTNDFEDLDETHVHRVRRETGVTYHDQFAMSELQDLYPNLYDQYLSGWS 628
           +RT+  YE+  FT D E+ D TH H VRR+  VTY D FA  EL   YP LY+  + GWS
Sbjct: 1   MRTINNYEYTSFTEDLEETDYTHPHVVRRDPEVTYEDTFAKKELLSRYPALYENLIRGWS 60

Query: 627 RSFYTRADHMKAIMQYSISETPINTVNETLYQQAMMAVLERLSSLQRVRAFDVLTQLDLV 448
           RS+YT  +H++AIMQY+   T  +   +  Y +A+  V E L SL  VRAF+VL +LDL+
Sbjct: 61  RSYYTGQEHLRAIMQYATPNTNFSECVQHAYTKAITKVTESLHSLPTVRAFNVLEELDLI 120

Query: 447 PFEPSSAAGYDYIGAKGELNGENHQRAIRRAKATLWSALAPDGEGMDHVVRTSVPDVGYT 268
           P+E SS+AGY Y G KG  +GENH +AI+ AKA LWS +  DGEG++HV+ T VPDVGYT
Sbjct: 121 PYESSSSAGYTYRGVKGPQHGENHMQAIKTAKAVLWSVIKDDGEGIEHVIDTYVPDVGYT 180

Query: 267 RTQLTLIGEKTKVRGVWGRAFHYILLEGTTAAPLLEAFKQGDTFLHIGHDPTQSVPDLLS 88
           RTQLT + EK KVRGVWGRAFHYILLEGT+AAPLLEAF   +TF HIG DPT SVP L+S
Sbjct: 181 RTQLTDLREKMKVRGVWGRAFHYILLEGTSAAPLLEAFANSNTFFHIGKDPTVSVPYLIS 240

Query: 87  RTASQCAWLIALDWTAFDASVSRFEIHAA 1
            T  Q  WL A+DW AFDA+VSRFEI+AA
Sbjct: 241 YTKGQAPWLTAIDWQAFDATVSRFEINAA 269


>gb|ADP24757.1| RNA-dependent RNA polymerase [Beet cryptic virus 2]
          Length = 475

 Score =  325 bits (833), Expect = 1e-86
 Identities = 159/269 (59%), Positives = 194/269 (72%)
 Frame = -1

Query: 807 LRTLREYEFKDFTNDFEDLDETHVHRVRRETGVTYHDQFAMSELQDLYPNLYDQYLSGWS 628
           +RT+  YE+  FT D E+ D TH H VRR+  VTY D FA  EL   YP LY+  + GWS
Sbjct: 1   MRTINNYEYTSFTEDLEETDYTHPHVVRRDPEVTYEDTFAKKELLSRYPALYENLIRGWS 60

Query: 627 RSFYTRADHMKAIMQYSISETPINTVNETLYQQAMMAVLERLSSLQRVRAFDVLTQLDLV 448
           RS+YT  +H++AIMQY+   T  +   +  Y +A+  V E L SL  VRAF+VL +LDL+
Sbjct: 61  RSYYTGQEHLRAIMQYATPNTNFSECVQHAYTKAITKVTESLHSLPTVRAFNVLEELDLI 120

Query: 447 PFEPSSAAGYDYIGAKGELNGENHQRAIRRAKATLWSALAPDGEGMDHVVRTSVPDVGYT 268
           P+E SS+AGY Y G KG  +GENH +AI+ AKA LWS +  DGEG++HV+ T VPDVGYT
Sbjct: 121 PYESSSSAGYTYRGVKGPQHGENHMQAIKTAKAVLWSVIKDDGEGIEHVIDTYVPDVGYT 180

Query: 267 RTQLTLIGEKTKVRGVWGRAFHYILLEGTTAAPLLEAFKQGDTFLHIGHDPTQSVPDLLS 88
           RTQLT + EK KVRGVWGRAFHYILLEGT+AAPLLEAF   +TF HIG DPT SVP L+S
Sbjct: 181 RTQLTDLREKMKVRGVWGRAFHYILLEGTSAAPLLEAFANSNTFFHIGKDPTVSVPYLIS 240

Query: 87  RTASQCAWLIALDWTAFDASVSRFEIHAA 1
            T  Q  WL A+DW AFDA+VSRFEI+AA
Sbjct: 241 YTKGQAPWLTAIDWQAFDATVSRFEINAA 269


>gb|AFO65948.1| RNA-dependent RNA polymerase [Alphacryptovirus JF-2012]
          Length = 478

 Score =  296 bits (757), Expect = 1e-77
 Identities = 141/263 (53%), Positives = 183/263 (69%)
 Frame = -1

Query: 789 YEFKDFTNDFEDLDETHVHRVRRETGVTYHDQFAMSELQDLYPNLYDQYLSGWSRSFYTR 610
           Y++ +FT D    D  H H VRRET  TY D FA  E+       Y Q L GWSRS+Y  
Sbjct: 8   YDYTNFTQDLLKSDRKHPHVVRRETATTYRDDFAFKEVVSFDRLAYIQRLEGWSRSYYLP 67

Query: 609 ADHMKAIMQYSISETPINTVNETLYQQAMMAVLERLSSLQRVRAFDVLTQLDLVPFEPSS 430
             H++A++QY+    P   +N  +Y QA+  V   L SLQ VRAFDVLT+L+ + ++ SS
Sbjct: 68  EKHLEALLQYATPNVPCTALNLNVYCQAIQVVENGLRSLQPVRAFDVLTELNQISYKQSS 127

Query: 429 AAGYDYIGAKGELNGENHQRAIRRAKATLWSALAPDGEGMDHVVRTSVPDVGYTRTQLTL 250
           AAGYDYIGAKG ++GENH+R I RAKA LWS +  DGEG+DH + TSVPDVGYTRTQL  
Sbjct: 128 AAGYDYIGAKGPIDGENHKRTISRAKAVLWSVVKEDGEGIDHAIETSVPDVGYTRTQLAD 187

Query: 249 IGEKTKVRGVWGRAFHYILLEGTTAAPLLEAFKQGDTFLHIGHDPTQSVPDLLSRTASQC 70
           + EKTKVR VWGRAFHYILLEG  A P +++  +G +F+H G DPT SVP  L++ +SQC
Sbjct: 188 LTEKTKVRQVWGRAFHYILLEGLVAQPFIQSIMEGPSFIHTGRDPTLSVPQSLAKVSSQC 247

Query: 69  AWLIALDWTAFDASVSRFEIHAA 1
            ++ +LDW +FDA+V+RFEI+ +
Sbjct: 248 KYIYSLDWKSFDATVNRFEINTS 270


>ref|YP_002364401.1| putative RNA-dependent RNA polymerase [Raphanus sativus cryptic
           virus 3] gi|217039787|gb|ACJ76981.1| putative
           RNA-dependent RNA polymerase [Raphanus sativus cryptic
           virus 3]
          Length = 481

 Score =  295 bits (754), Expect = 2e-77
 Identities = 142/266 (53%), Positives = 181/266 (68%)
 Frame = -1

Query: 798 LREYEFKDFTNDFEDLDETHVHRVRRETGVTYHDQFAMSELQDLYPNLYDQYLSGWSRSF 619
           L  Y +  F +D E+ ++ H + +RRET VTY D+FA+  + DL    Y+Q+L GWSRS+
Sbjct: 8   LAGYVYTGFISDLEETNQRHTNVIRRETAVTYRDEFALQSILDLDYRQYEQHLQGWSRSY 67

Query: 618 YTRADHMKAIMQYSISETPINTVNETLYQQAMMAVLERLSSLQRVRAFDVLTQLDLVPFE 439
           YT   H +AI+QYS  + P+  +   +Y   +  V     SL  VRA+ VLTQLDLV ++
Sbjct: 68  YTPEKHQEAILQYSYPDIPVQAIKMDVYNDCIAQVQNEFRSLPNVRAYSVLTQLDLVKYK 127

Query: 438 PSSAAGYDYIGAKGELNGENHQRAIRRAKATLWSALAPDGEGMDHVVRTSVPDVGYTRTQ 259
            SSAAGY Y G KG     NH RAI RAKA LWSA+A DGEG++HV++TS PD+GYTRTQ
Sbjct: 128 SSSAAGYGYQGTKGNPGELNHARAISRAKAVLWSAIAADGEGIEHVIKTSTPDIGYTRTQ 187

Query: 258 LTLIGEKTKVRGVWGRAFHYILLEGTTAAPLLEAFKQGDTFLHIGHDPTQSVPDLLSRTA 79
           LT + EKTKVR VWGRAFHYILLEG  A P ++A  + +TF+H G DPT SVP LLS  A
Sbjct: 188 LTDLTEKTKVRQVWGRAFHYILLEGLVADPFIQAVMENNTFIHAGRDPTLSVPQLLSHIA 247

Query: 78  SQCAWLIALDWTAFDASVSRFEIHAA 1
               W+ +LDW  FDA+VSRFEI +A
Sbjct: 248 ETSDWIYSLDWKQFDATVSRFEIESA 273


>dbj|BAA34783.1| RNA-dependent RNA polymerase [Pyrus pyrifolia]
          Length = 477

 Score =  294 bits (753), Expect = 3e-77
 Identities = 139/263 (52%), Positives = 190/263 (72%)
 Frame = -1

Query: 789 YEFKDFTNDFEDLDETHVHRVRRETGVTYHDQFAMSELQDLYPNLYDQYLSGWSRSFYTR 610
           +EF D++ + E+L++ H+H+VRRE+  TY D+FA  EL DL+P  + Q++ GWSRS+Y  
Sbjct: 9   FEFVDYSEELENLNQNHIHKVRRESNTTYVDKFAERELIDLHPEYHRQFIQGWSRSYYNT 68

Query: 609 ADHMKAIMQYSISETPINTVNETLYQQAMMAVLERLSSLQRVRAFDVLTQLDLVPFEPSS 430
             HM+A++ Y     P++ V+  LYQ  +  V   L SL RV+AFDVLT+L+LV ++ S+
Sbjct: 69  ERHMEALLNYGTRNIPVDNVDYNLYQGCIDTVKNGLRSLPRVKAFDVLTELNLVSYKSST 128

Query: 429 AAGYDYIGAKGELNGENHQRAIRRAKATLWSALAPDGEGMDHVVRTSVPDVGYTRTQLTL 250
           AAGY+Y+GAKG  +G NH++AIRRA+AT+        EG+   + T+VPDVGYTRTQLT 
Sbjct: 129 AAGYNYMGAKGPFDGYNHKQAIRRARATVGDVSDNGIEGLRRAITTAVPDVGYTRTQLTD 188

Query: 249 IGEKTKVRGVWGRAFHYILLEGTTAAPLLEAFKQGDTFLHIGHDPTQSVPDLLSRTASQC 70
           + EKTK+R VWGRAFHYIL+EGT+A PL+  F +  +F HIG DP  SVPD+LS TA + 
Sbjct: 189 LTEKTKIRNVWGRAFHYILIEGTSADPLIRMFSKTKSFYHIGRDPLDSVPDVLSETAGKA 248

Query: 69  AWLIALDWTAFDASVSRFEIHAA 1
            WL A+DW  FDA+VSRFEI+AA
Sbjct: 249 RWLYAIDWKQFDATVSRFEINAA 271


>gb|AAB27624.1| putative RNA-dependent RNA polymerase [Beet cryptic virus 3]
          Length = 478

 Score =  288 bits (736), Expect = 3e-75
 Identities = 144/272 (52%), Positives = 187/272 (68%), Gaps = 1/272 (0%)
 Frame = -1

Query: 813 MALRTLREYEFKDFTNDFEDLDETHVHRVRRETGVTYHDQFAMSELQDLYPNLYDQYLSG 634
           MA R +REYEF +F  +   ++ TH + + RE+ V  +D+FA + L D +P LY+Q   G
Sbjct: 1   MAYRNIREYEFTNFNEELYQIEGTHTNTIGRESEVILNDEFAKAILIDEFPVLYEQVCQG 60

Query: 633 WSRSFYTRADHMKAIMQYSISETPINTVNETLYQQAMMAVLERLSSLQRVRAFDVLTQLD 454
           W+RSFYT   HM+AI+ Y+  +TP  T ++T++ QA  AV   L SL + RAFDV T+LD
Sbjct: 61  WARSFYTLEGHMQAILAYAQPDTPRETFDQTIWDQAYTAVQNELRSLPKARAFDVNTELD 120

Query: 453 LVPFEPSSAAGYDYIGAKGELNGENHQRAIRRAKATLWSALAPDGEGMDHVVRTSVPDVG 274
            VP+E SS+AGY Y   KG   GE H RAI R K TL +A+ PD EG ++ +  SVPD+G
Sbjct: 121 KVPYEQSSSAGYGYRSHKGPPGGETHMRAISRVKPTLMTAIRPDEEGPEYTILESVPDIG 180

Query: 273 YTRTQLTLIGEKTKVRGVWGRAFHYILLEGTTAAPLLEAFKQGDTFLHIGHDPTQSVPDL 94
           YTRTQL  + EKTKVRGVWGRAFHYIL+EGT A PLLE F  G TF+HIG DP  SVP +
Sbjct: 181 YTRTQLADLREKTKVRGVWGRAFHYILIEGTAARPLLENFMLGTTFMHIGSDPQLSVPRI 240

Query: 93  LSRTASQ-CAWLIALDWTAFDASVSRFEIHAA 1
           L +   +   WL ALDW++FD+SV+RFEI+ A
Sbjct: 241 LHQMKREGSKWLYALDWSSFDSSVTRFEINCA 272


>gb|AGH12859.1| RNA-dependent RNA polymerase [Citrullus lanatus cryptic virus]
          Length = 415

 Score =  285 bits (728), Expect = 2e-74
 Identities = 141/224 (62%), Positives = 167/224 (74%)
 Frame = -1

Query: 672 DLYPNLYDQYLSGWSRSFYTRADHMKAIMQYSISETPINTVNETLYQQAMMAVLERLSSL 493
           ++ P LY+Q LSGWSRS+Y    HM+AI+QY   + PI+++N+ LY++ +  V  RLSSL
Sbjct: 2   NISPLLYEQCLSGWSRSYYLHDKHMQAIIQYGYKDVPISSINDRLYKECVHEVQNRLSSL 61

Query: 492 QRVRAFDVLTQLDLVPFEPSSAAGYDYIGAKGELNGENHQRAIRRAKATLWSALAPDGEG 313
            RVRA DVL++LD V F+ SSAAGYDYIGAKG   GENH RA+ RAKA +WS       G
Sbjct: 62  PRVRALDVLSELDSVTFKSSSAAGYDYIGAKGPKGGENHTRAMSRAKAIMWSIAETGETG 121

Query: 312 MDHVVRTSVPDVGYTRTQLTLIGEKTKVRGVWGRAFHYILLEGTTAAPLLEAFKQGDTFL 133
           M H + T+VPDVGYTRTQL  I EKTKVR VWGRAFHYILLEG TA PL+ A ++ DTF+
Sbjct: 122 MKHAIETAVPDVGYTRTQLADITEKTKVRHVWGRAFHYILLEGLTADPLIRAVQRADTFI 181

Query: 132 HIGHDPTQSVPDLLSRTASQCAWLIALDWTAFDASVSRFEIHAA 1
           HIG DPT SVP LLS TA QC WL ALDW  FDA+VSRFEI AA
Sbjct: 182 HIGKDPTVSVPRLLSDTAEQCKWLYALDWKQFDATVSRFEIEAA 225


>gb|AEJ07890.1| putative RNA-dependent RNA polymerase [Pepper cryptic virus 1]
          Length = 479

 Score =  284 bits (727), Expect = 3e-74
 Identities = 144/274 (52%), Positives = 181/274 (66%), Gaps = 3/274 (1%)
 Frame = -1

Query: 813 MALRTLREYEFKDFTNDFEDLDETHVHRVRRETGVTYHDQFAMSELQ---DLYPNLYDQY 643
           M   TL  Y++  F  D       H H V RE   TY DQ+A   ++    LYP L    
Sbjct: 1   MVRGTLVGYDYTQFQGDLVKSTHRHPHVVHREIATTYVDQYAYEHIETFSSLYPELI--- 57

Query: 642 LSGWSRSFYTRADHMKAIMQYSISETPINTVNETLYQQAMMAVLERLSSLQRVRAFDVLT 463
           L GWSRS+Y    H+ A++ YS+   P + ++++LY+QA+ +      SL RV+AFDVLT
Sbjct: 58  LKGWSRSYYLPEKHLAAVLNYSMPNVPASQLSQSLYRQAIESAKNGFISLPRVKAFDVLT 117

Query: 462 QLDLVPFEPSSAAGYDYIGAKGELNGENHQRAIRRAKATLWSALAPDGEGMDHVVRTSVP 283
           ++D VPF+ SS+AGY+Y G KG +  ENH RAI  AKA LWSA+  DGEG++HV+RTSVP
Sbjct: 118 EMDQVPFKSSSSAGYNYTGRKGLIGDENHSRAISIAKAVLWSAIKDDGEGIEHVIRTSVP 177

Query: 282 DVGYTRTQLTLIGEKTKVRGVWGRAFHYILLEGTTAAPLLEAFKQGDTFLHIGHDPTQSV 103
           DVGYTRTQLT + EKTKVR VWGRAFHYILLEG  A P ++      TF+H G DP  SV
Sbjct: 178 DVGYTRTQLTDLLEKTKVRQVWGRAFHYILLEGLVAYPFIQTVMSHKTFIHAGQDPLISV 237

Query: 102 PDLLSRTASQCAWLIALDWTAFDASVSRFEIHAA 1
           P LLS  A  C W+ +LDW+ FDA+VSRFEIHAA
Sbjct: 238 PRLLSDVALNCKWIYSLDWSQFDATVSRFEIHAA 271


>gb|ABC96789.2| RNA-dependent RNA polymerase-like protein [Pepper cryptic virus 1]
          Length = 311

 Score =  243 bits (621), Expect = 6e-62
 Identities = 117/201 (58%), Positives = 148/201 (73%)
 Frame = -1

Query: 603 HMKAIMQYSISETPINTVNETLYQQAMMAVLERLSSLQRVRAFDVLTQLDLVPFEPSSAA 424
           H+ A++ YS+   P + ++++LY+QA+ +      SL RV+AFDVLT++D VPF+ SS+A
Sbjct: 5   HLAAVLNYSMPNVPASQLSQSLYRQAIESAKNGFISLPRVKAFDVLTEMDQVPFKSSSSA 64

Query: 423 GYDYIGAKGELNGENHQRAIRRAKATLWSALAPDGEGMDHVVRTSVPDVGYTRTQLTLIG 244
           GY+Y G KG +  ENH RAI  AKA LWSA+  DGEG++HV+RTSVPDVGYTRTQLT + 
Sbjct: 65  GYNYTGRKGLIGDENHSRAISIAKAVLWSAIKDDGEGIEHVIRTSVPDVGYTRTQLTDLL 124

Query: 243 EKTKVRGVWGRAFHYILLEGTTAAPLLEAFKQGDTFLHIGHDPTQSVPDLLSRTASQCAW 64
           EKTKVR VWGRAFHYILLEG  A P ++      TF+H G DP  SVP LLS  A  C W
Sbjct: 125 EKTKVRQVWGRAFHYILLEGLVAYPFIQTVMSHKTFIHAGQDPLISVPRLLSDVALNCKW 184

Query: 63  LIALDWTAFDASVSRFEIHAA 1
           + +LDW+ FDA+VSRFEIHAA
Sbjct: 185 IYSLDWSQFDATVSRFEIHAA 205


>gb|ADE34113.1| putative RNA-dependent RNA polymerase [Pittosporum cryptic virus-1]
          Length = 225

 Score =  186 bits (471), Expect = 1e-44
 Identities = 88/134 (65%), Positives = 103/134 (76%)
 Frame = -1

Query: 402 KGELNGENHQRAIRRAKATLWSALAPDGEGMDHVVRTSVPDVGYTRTQLTLIGEKTKVRG 223
           KG+ +GENH+RAI RAKA LWSA+A DGEG++HV+ T VPDVGYTRTQLT + EKTKVR 
Sbjct: 1   KGQYDGENHKRAITRAKAVLWSAIADDGEGIEHVISTFVPDVGYTRTQLTDLLEKTKVRQ 60

Query: 222 VWGRAFHYILLEGTTAAPLLEAFKQGDTFLHIGHDPTQSVPDLLSRTASQCAWLIALDWT 43
           VWGR FHYILLEG  A+P +    + DTF+H G DP  SVP+LLS  A  C WL ALDW 
Sbjct: 61  VWGRCFHYILLEGLVASPFINELMKHDTFIHAGKDPIFSVPELLSNVARNCRWLYALDWK 120

Query: 42  AFDASVSRFEIHAA 1
            FDA+VSRFEI+ A
Sbjct: 121 QFDATVSRFEINTA 134


>ref|YP_004429258.1| RNA-dependent RNA polymerase [Fig cryptic virus]
           gi|332163669|emb|CBW77436.1| RNA-dependent RNA
           polymerase [Fig cryptic virus]
          Length = 472

 Score =  154 bits (388), Expect = 6e-35
 Identities = 98/246 (39%), Positives = 137/246 (55%), Gaps = 5/246 (2%)
 Frame = -1

Query: 723 RETGVTYHDQFAMSELQDLYPNLYDQYLSGWSRSFYTRADHMKAIMQYSISETPINTVNE 544
           R+  +   DQ A   ++   P    Q + GW+RSFYT    M +IMQ+S  +  I+   +
Sbjct: 17  RDEFIILVDQPAYDSVRRNAPQADMQEIDGWARSFYTVEGIMASIMQFS--KPLIHEPTD 74

Query: 543 TLYQQAMMAVLERLSSL-QRVRAFDVLTQLDLVPFEPSSAAGYDYIGAKGELNGENHQRA 367
            ++       L ++ SL  +V++       D VPFE SS+AGY Y G KGE N  +  ++
Sbjct: 75  PIWNDVKRETLMKIGSLFPQVQSLPFEGGFDHVPFESSSSAGYGYDGKKGEGNNFHRAKS 134

Query: 366 IRRAKATLWSALAPDGEGMD----HVVRTSVPDVGYTRTQLTLIGEKTKVRGVWGRAFHY 199
           I  A    +S    D +G D    H+++   PD+ +TRTQL  +    KVR V+G AFH 
Sbjct: 135 IANAAVRKFSEDI-DNQGYDYAVSHLIQQGTPDIAFTRTQLAKL-PSIKVRIVFGEAFHN 192

Query: 198 ILLEGTTAAPLLEAFKQGDTFLHIGHDPTQSVPDLLSRTASQCAWLIALDWTAFDASVSR 19
           IL+EG +AAPLLEAFK+ DTF   G DPT  VP +L + ++   W I LDW AFDASV  
Sbjct: 193 ILIEGLSAAPLLEAFKRMDTFYFTGKDPTIYVPRILHKMSTNEGWFICLDWKAFDASVQL 252

Query: 18  FEIHAA 1
           +EI  A
Sbjct: 253 WEIDHA 258


>ref|YP_001274391.1| RNA-dependent RNA polymerase [Fragaria chiloensis cryptic virus]
           gi|117912931|gb|AAZ06131.2| RNA-dependent RNA polymerase
           [Fragaria chiloensis cryptic virus]
          Length = 479

 Score =  150 bits (380), Expect = 5e-34
 Identities = 92/264 (34%), Positives = 139/264 (52%)
 Frame = -1

Query: 792 EYEFKDFTNDFEDLDETHVHRVRRETGVTYHDQFAMSELQDLYPNLYDQYLSGWSRSFYT 613
           E+ F+       +L+E    R+R E  V + D ++   +  + P      L GW+RS+YT
Sbjct: 2   EHRFRGIPRGLIELEEIPTRRLREER-VVHIDAWSSKAIDAIVPLSLRIELDGWARSYYT 60

Query: 612 RADHMKAIMQYSISETPINTVNETLYQQAMMAVLERLSSLQRVRAFDVLTQLDLVPFEPS 433
              H+ +IMQY   + P  T     +      V  + + + +V+    L QLD V +  S
Sbjct: 61  LQAHIDSIMQYDRPKLPQPT--NAAWNTTTQHVRTQFARMDKVQTLSYL-QLDQVKWVRS 117

Query: 432 SAAGYDYIGAKGELNGENHQRAIRRAKATLWSALAPDGEGMDHVVRTSVPDVGYTRTQLT 253
           SAAGY Y+G K +   +N+ RA R+   T+   L  D +     +  S PD+ +TRTQL 
Sbjct: 118 SAAGYGYVGRKSD--NDNYFRA-RKTAFTIAEKLNHDRDYGPLALEDSTPDIAFTRTQLC 174

Query: 252 LIGEKTKVRGVWGRAFHYILLEGTTAAPLLEAFKQGDTFLHIGHDPTQSVPDLLSRTASQ 73
            I  K K+R VWG AFHY+LLEG  A P+++ F +  +F  IG DP  +VP L+ +  S+
Sbjct: 175 QIKVKRKIRNVWGEAFHYVLLEGLFADPIIQHFIRNKSFYFIGEDPLLAVPRLVEKILSE 234

Query: 72  CAWLIALDWTAFDASVSRFEIHAA 1
             ++   DW+ FDASV  +EI  A
Sbjct: 235 QDYVYMFDWSGFDASVQEWEIRFA 258


>gb|ABV89762.1| putative RNA-dependent RNA polymerase [Rosa multiflora cryptic
           virus]
          Length = 479

 Score =  149 bits (377), Expect = 1e-33
 Identities = 92/264 (34%), Positives = 137/264 (51%)
 Frame = -1

Query: 792 EYEFKDFTNDFEDLDETHVHRVRRETGVTYHDQFAMSELQDLYPNLYDQYLSGWSRSFYT 613
           E+ F+       +L+E    R+R E  V + D ++   +  + P      L GW+RS+YT
Sbjct: 2   EHRFRGIPRGLIELEEIPTRRLREEC-VIHIDAWSSQAIDAIVPLSLRNELDGWARSYYT 60

Query: 612 RADHMKAIMQYSISETPINTVNETLYQQAMMAVLERLSSLQRVRAFDVLTQLDLVPFEPS 433
              H+ ++MQY      +     T +      +    + +++V A   L QLD V +  S
Sbjct: 61  LQAHVDSLMQYD--RPKLQPPTNTAWNITTQYIRTEFARMKKVTALSYL-QLDQVKWVRS 117

Query: 432 SAAGYDYIGAKGELNGENHQRAIRRAKATLWSALAPDGEGMDHVVRTSVPDVGYTRTQLT 253
           SAAGY Y G K +  G+N+ RA R+   TL   L  + +     +  S PDV +TRTQL 
Sbjct: 118 SAAGYGYTGRKSD--GDNYIRA-RKTAFTLAEKLNHNRDYGPLALEDSTPDVAFTRTQLC 174

Query: 252 LIGEKTKVRGVWGRAFHYILLEGTTAAPLLEAFKQGDTFLHIGHDPTQSVPDLLSRTASQ 73
            I  K K+R VWG AFHY+LLEG  A PL++ F +  +F  IG DP  +VP L+    S+
Sbjct: 175 QIKVKRKIRNVWGEAFHYVLLEGLFADPLIQQFMRIKSFYFIGEDPLLAVPRLIEEILSE 234

Query: 72  CAWLIALDWTAFDASVSRFEIHAA 1
             ++   DW+ FDASV  +E+  A
Sbjct: 235 QDYIYMFDWSGFDASVQEWELRFA 258


>ref|YP_001686786.1| RNA-dependent RNA polymerase [Rose cryptic virus 1]
           gi|167077473|gb|ABZ10945.1| RNA-dependent RNA polymerase
           [Rose cryptic virus 1]
          Length = 479

 Score =  149 bits (377), Expect = 1e-33
 Identities = 92/264 (34%), Positives = 137/264 (51%)
 Frame = -1

Query: 792 EYEFKDFTNDFEDLDETHVHRVRRETGVTYHDQFAMSELQDLYPNLYDQYLSGWSRSFYT 613
           E+ F+       +L+E    R+R E  V + D ++   +  + P      L GW+RS+YT
Sbjct: 2   EHRFRGIPRGLIELEEIPTRRLREEC-VIHIDAWSSQAIDAIVPLSLRNELDGWARSYYT 60

Query: 612 RADHMKAIMQYSISETPINTVNETLYQQAMMAVLERLSSLQRVRAFDVLTQLDLVPFEPS 433
              H+ ++MQY      +     T +      +    + +++V A   L QLD V +  S
Sbjct: 61  LQAHVDSLMQYD--RPKLQPPTNTAWNITTQYIRTEFARMKKVTALSYL-QLDQVKWVRS 117

Query: 432 SAAGYDYIGAKGELNGENHQRAIRRAKATLWSALAPDGEGMDHVVRTSVPDVGYTRTQLT 253
           SAAGY Y G K +  G+N+ RA R+   TL   L  + +     +  S PDV +TRTQL 
Sbjct: 118 SAAGYGYTGRKSD--GDNYIRA-RKTAFTLAEKLNHNRDYGPLALEDSTPDVAFTRTQLC 174

Query: 252 LIGEKTKVRGVWGRAFHYILLEGTTAAPLLEAFKQGDTFLHIGHDPTQSVPDLLSRTASQ 73
            I  K K+R VWG AFHY+LLEG  A PL++ F +  +F  IG DP  +VP L+    S+
Sbjct: 175 QIKVKRKIRNVWGEAFHYVLLEGLFADPLIQQFMRIKSFYFIGEDPLLAVPRLIEEILSE 234

Query: 72  CAWLIALDWTAFDASVSRFEIHAA 1
             ++   DW+ FDASV  +E+  A
Sbjct: 235 QDYIYMFDWSGFDASVQEWELRFA 258


>ref|YP_009026407.1| RNA dependent RNA polymerase [Pigeon pea latent virus]
           gi|575096426|emb|CDL67777.1| RNA dependent RNA
           polymerase [Pigeon pea latent virus]
          Length = 475

 Score =  148 bits (374), Expect = 3e-33
 Identities = 92/264 (34%), Positives = 137/264 (51%)
 Frame = -1

Query: 792 EYEFKDFTNDFEDLDETHVHRVRRETGVTYHDQFAMSELQDLYPNLYDQYLSGWSRSFYT 613
           ++ ++  T     L+E    R+R E  +   D++A   +    P      L GW+RS+YT
Sbjct: 2   DHRWRGATRGLIRLEEIPTRRIRDERRILI-DEYASEAINRYVPLHLRAELEGWARSYYT 60

Query: 612 RADHMKAIMQYSISETPINTVNETLYQQAMMAVLERLSSLQRVRAFDVLTQLDLVPFEPS 433
              H+ AIM Y      ++  ++  +   M  V E+   + +V A      LD V +  S
Sbjct: 61  LETHLNAIMNYD--RPKLSQPSDAAWVSTMHHVREQFRQMDKVTALSHY-HLDKVKWVRS 117

Query: 432 SAAGYDYIGAKGELNGENHQRAIRRAKATLWSALAPDGEGMDHVVRTSVPDVGYTRTQLT 253
           SAAGY Y+G K +    N++RA R    T+   L  + +     ++ S PDV +TRTQL 
Sbjct: 118 SAAGYGYVGLKSDPG--NYERA-RTTAFTIAERLNHERDYAPEALKNSTPDVAFTRTQLC 174

Query: 252 LIGEKTKVRGVWGRAFHYILLEGTTAAPLLEAFKQGDTFLHIGHDPTQSVPDLLSRTASQ 73
            I  K KVR VWG AFHY+LLEG  A PL++ F + D+F  IG DP  +VP L+    S+
Sbjct: 175 QIKIKRKVRNVWGEAFHYVLLEGLFADPLIQHFMKIDSFYFIGQDPLLAVPYLIEDILSE 234

Query: 72  CAWLIALDWTAFDASVSRFEIHAA 1
             ++   DW+ FD+SV  +EI  A
Sbjct: 235 SDYVYMFDWSGFDSSVHEWEIRFA 258


>ref|YP_001686783.1| putative RNA dependent RNA polymerse [Raphanus sativus cryptic
           virus 2] gi|77863174|gb|ABB04855.1| putative RNA
           dependent RNA polymerse [Raphanus sativus cryptic virus
           2]
          Length = 477

 Score =  147 bits (372), Expect = 4e-33
 Identities = 92/269 (34%), Positives = 138/269 (51%), Gaps = 5/269 (1%)
 Frame = -1

Query: 792 EYEFKDFTNDFEDLDETHVHRVRRETGVTYHDQFAMSELQDLYPNLYDQYLSGWSRSFYT 613
           ++EF+       ++    + RV+R+      D++A   +    P+     L GW+RS Y+
Sbjct: 2   DHEFRKIREGLIEIGTVSL-RVQRDEFKVIIDEYAAEAVFKFVPSTMLSQLQGWARSVYS 60

Query: 612 RADHMKAIMQYSISETPINTVNETLYQQAMMAVLERLSSLQRVRAFDVLTQLDLVPFEP- 436
              H+ AI+ Y   + P  T  + ++ Q       +  +LQ  R F  +T +    F+  
Sbjct: 61  LDQHVDAILAYRRQKLPEPT--DDVWNQT------KQHTLQLFRRFPKITPISYKSFDEV 112

Query: 435 ----SSAAGYDYIGAKGELNGENHQRAIRRAKATLWSALAPDGEGMDHVVRTSVPDVGYT 268
               SS+AGY Y+G KG+  G+N+ +A RR   T+   L  D       +  S PDV +T
Sbjct: 113 KWISSSSAGYGYVGHKGD--GDNYLKA-RRTAVTIAEKLDHDRNYAPEAINQSTPDVAFT 169

Query: 267 RTQLTLIGEKTKVRGVWGRAFHYILLEGTTAAPLLEAFKQGDTFLHIGHDPTQSVPDLLS 88
           RTQL+ +  KTKVR VWG AFHY+LLEG  A PL+  F   ++F  IG +P  SVP L+ 
Sbjct: 170 RTQLSQVKVKTKVRNVWGEAFHYVLLEGLFADPLINFFSNEESFYFIGRNPLLSVPTLIE 229

Query: 87  RTASQCAWLIALDWTAFDASVSRFEIHAA 1
                  ++ A DW+ FDASV  +EI  A
Sbjct: 230 EIFKSKDYVYAFDWSGFDASVQEWEIRFA 258


>gb|AFQ36917.1| putative RNA-dependent RNA polymerase, partial [Rose cryptic virus
           1]
          Length = 195

 Score =  125 bits (315), Expect = 2e-26
 Identities = 76/201 (37%), Positives = 109/201 (54%)
 Frame = -1

Query: 630 SRSFYTRADHMKAIMQYSISETPINTVNETLYQQAMMAVLERLSSLQRVRAFDVLTQLDL 451
           +RS+YT   H+ ++MQY      +     T +      +    + +++V A   L QLD 
Sbjct: 1   ARSYYTLQAHVDSLMQYD--RPKLQPPTNTAWNITTQYIRTEFARMKKVTALSYL-QLDQ 57

Query: 450 VPFEPSSAAGYDYIGAKGELNGENHQRAIRRAKATLWSALAPDGEGMDHVVRTSVPDVGY 271
           V +  SSAAGY Y G K +  G+N+ RA R+   TL   L  + +     +  S PDV +
Sbjct: 58  VKWVRSSAAGYGYTGRKSD--GDNYIRA-RKTAFTLAEKLNHNRDYGPLALEDSTPDVAF 114

Query: 270 TRTQLTLIGEKTKVRGVWGRAFHYILLEGTTAAPLLEAFKQGDTFLHIGHDPTQSVPDLL 91
           TRTQL  I  K K+R VWG AFHY+LLEG  A PL++ F +  +F  IG DP  +VP L+
Sbjct: 115 TRTQLCQIKVKRKIRNVWGEAFHYVLLEGLFADPLIQQFMRIKSFYFIGEDPLLAVPRLI 174

Query: 90  SRTASQCAWLIALDWTAFDAS 28
               S+  ++   DW+ FDAS
Sbjct: 175 EEILSEQDYIYMFDWSGFDAS 195