BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00017616
         (1212 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   523   e-146
ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prun...   489   e-135
ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Popu...   484   e-134
ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prun...   482   e-133
gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]           481   e-133
ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr...   473   e-131
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   467   e-129
ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   466   e-129
ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [...   455   e-125
ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit...   434   e-119
ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   431   e-118
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   421   e-115
ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   418   e-114
ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutr...   413   e-113
gb|EYU42699.1| hypothetical protein MIMGU_mgv1a006097mg [Mimulus...   408   e-111
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...   406   e-110
ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Caps...   405   e-110
ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [A...   402   e-109
ref|XP_002883182.1| pseudouridine synthase family protein [Arabi...   402   e-109
ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mit...   400   e-109

>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera]
            gi|296090438|emb|CBI40257.3| unnamed protein product
            [Vitis vinifera]
          Length = 476

 Score =  523 bits (1348), Expect = e-146
 Identities = 273/389 (70%), Positives = 311/389 (79%), Gaps = 1/389 (0%)
 Frame = -1

Query: 1164 LLRRAFLRSPICTAAAALKASRICISVVHEKRPHYTTASQSVXXXXXXXXXXXXKGKWFT 985
            L RR FL+S   T          CIS + ++R  + T++ +V             GKWFT
Sbjct: 6    LRRRFFLQSRRETTGKV--GDMFCISALDQQRSCFATSNDAVSEAHKSKK-----GKWFT 58

Query: 984  LPPFTSTVDASSLGKELSGQRMSGIDSKMANGYASISALKWVVRCCPQLPRSLVQKLFRL 805
            LP FT  VDASSLGK LSG R + +++      AS +ALKWVVRCCPQLPRSLVQKLFRL
Sbjct: 59   LPAFTPVVDASSLGKVLSGHR-TDLNTGNTTAGASTTALKWVVRCCPQLPRSLVQKLFRL 117

Query: 804  RQVRRESPNTTSESDGSCQEQKRRVTRVAAKDSMNLGDRIFLPITVQQFPSQKHECHCNE 625
            RQVRRES N  + SD   Q Q+ R+ RVAAKD MNLGD+I LPITV++FPS+KHE HCN+
Sbjct: 118  RQVRRESYNMIT-SDIGVQNQEHRLKRVAAKDLMNLGDQILLPITVEEFPSEKHEYHCND 176

Query: 624  EETGFIRNLELYKDSAIIVVNKPPGLSVQGGIGIQKSLDELAATCLRYDYSEPPRLVHRL 445
            EE  F+ NLELYKD AIIVVNKPPGL VQGGIGI++SLDELAAT LRYD SEPPRLVHRL
Sbjct: 177  EEINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSLDELAATYLRYDCSEPPRLVHRL 236

Query: 444  DRDSSGILVMGRTQTSSTVLHSIFREKTFGA-NEDIGSKKRILERRYLALVIGSPARQRG 268
            DRDSSGIL+MGRTQTS+T+LHSIFREKTFGA N DI +KKRIL+RRY ALVIGSP R RG
Sbjct: 237  DRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWALVIGSPRRPRG 296

Query: 267  IISAPLGRIVVDNGKSERITIMNNSQTMSSQHAITEYRVIESSSHGYTWVELFPLTGRKH 88
            +ISAPLG++VVD+GKSERITI++N QTMSSQHAITEYRVI+SS HGYTW+EL PLTGRKH
Sbjct: 297  LISAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWLELSPLTGRKH 356

Query: 87   QLRVHCAEVLGTPIVGDYKYGWQTHKKWK 1
            QLRVHCAEVLGTPIVGDYKYGWQ H+KWK
Sbjct: 357  QLRVHCAEVLGTPIVGDYKYGWQAHRKWK 385


>ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
            gi|462395210|gb|EMJ01009.1| hypothetical protein
            PRUPE_ppa004969mg [Prunus persica]
          Length = 483

 Score =  489 bits (1258), Expect = e-135
 Identities = 258/406 (63%), Positives = 305/406 (75%), Gaps = 13/406 (3%)
 Frame = -1

Query: 1179 MVDLYLLRRAFLRSPICTAAAALKASRICISVVHEKRPHYTTASQSVXXXXXXXXXXXXK 1000
            M+   LLRR  LR P  + A      R+CIS  H  R + TT +                
Sbjct: 1    MMGPILLRRLLLRPPPSSTA------RLCISAFHNWRSYATTET-------FHEDREKRG 47

Query: 999  GKWFTLPPFTSTVDASSLGKELSGQRMSGIDSKMANGYASIS-----ALKWVVRCCPQLP 835
             KWFTLPPFT+T++ S+LGKELS  R  G D       AS +     ALKWV RCCP+LP
Sbjct: 48   EKWFTLPPFTATINGSALGKELSRNRSYGRDVITKTATASTTSTTTTALKWVTRCCPELP 107

Query: 834  RSLVQKLFRLRQVRRESPNTTSESDGSCQEQKRRVTRVAAKDSMNLGDRIFLPITVQQFP 655
            RSLVQKLFRLRQVRRES +     +G  +  +R + RVAAKDSMN+GDRI LP++VQ+FP
Sbjct: 108  RSLVQKLFRLRQVRRESCDMECSGEG-VEALERPLKRVAAKDSMNVGDRIHLPLSVQEFP 166

Query: 654  SQKHE-------CHCNEEETGFIRNLELYKDSAIIVVNKPPGLSVQGGIGIQKSLDELAA 496
            + K E       C+C+EEE  FIR+LELYKD AIIV+NKPPG+ VQGGIGI++SLDELAA
Sbjct: 167  NDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAA 226

Query: 495  TCLRYDYSEPPRLVHRLDRDSSGILVMGRTQTSSTVLHSIFREKTFGA-NEDIGSKKRIL 319
             CL YD+SEPPRLVHRLDRDSSGILVMGRTQTS+TVLHSIFREKTFGA N++I   KRIL
Sbjct: 227  ACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFGASNDEIDDAKRIL 286

Query: 318  ERRYLALVIGSPARQRGIISAPLGRIVVDNGKSERITIMNNSQTMSSQHAITEYRVIESS 139
            +RRY ALVIGSP +++G+ISAPLG++VVDNGKS+RITI+N+SQT+ SQHAIT+Y+VI S 
Sbjct: 287  QRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPSQHAITKYKVIGSP 346

Query: 138  SHGYTWVELFPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHKKWK 1
              GYTW+EL PLTGRKHQLRVHCAEVL TPIVGDYKYGWQTH+ WK
Sbjct: 347  CPGYTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWK 392


>ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
            gi|550331407|gb|EEE87831.2| hypothetical protein
            POPTR_0009s09860g [Populus trichocarpa]
          Length = 471

 Score =  484 bits (1245), Expect = e-134
 Identities = 252/394 (63%), Positives = 309/394 (78%), Gaps = 1/394 (0%)
 Frame = -1

Query: 1179 MVDLYLLRRAFLRSPICTAAAALKASRICISVVHEKRPHYTTASQSVXXXXXXXXXXXXK 1000
            MV   LL R  L+     + ++L A++  IS V   +  YTT ++S             +
Sbjct: 3    MVYATLLGRVLLQPS--RSISSLHATKPSISTVRVLQSRYTTNTKS-----QNHYENDKR 55

Query: 999  GKWFTLPPFTSTVDASSLGKELSGQRMSGIDSKMANGYASISALKWVVRCCPQLPRSLVQ 820
            GKWFTLPP+TST++ S LG  LS +    I +K A+     +ALKWV+RCCP+LPR+LVQ
Sbjct: 56   GKWFTLPPYTSTINGSVLGIALSAR----IPAKSAS---ETTALKWVLRCCPELPRNLVQ 108

Query: 819  KLFRLRQVRRESPNTTSESDGSCQEQKRRVTRVAAKDSMNLGDRIFLPITVQQFPSQKHE 640
            KLFRLRQVRRESP   S + G  Q Q+ R+ RVAAKDSM++GDRIFLPI+V+  P++K +
Sbjct: 109  KLFRLRQVRRESPVMESCNLGD-QGQEHRLKRVAAKDSMDVGDRIFLPISVKVLPAEKQD 167

Query: 639  CHCNEEETGFIRNLELYKDSAIIVVNKPPGLSVQGGIGIQKSLDELAATCLRYDYSEPPR 460
            CHCNEEE  FIR LELYKD+AIIVVNKPPG+ VQGGIGI++SLDEL+A+C   DYSEPPR
Sbjct: 168  CHCNEEEINFIRGLELYKDAAIIVVNKPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPR 227

Query: 459  LVHRLDRDSSGILVMGRTQTSSTVLHSIFREKTFGA-NEDIGSKKRILERRYLALVIGSP 283
            LVHRLDRD SGILVMGRTQTS+TVLH+IFREKT  A N+D+G+K+RIL+R+Y ALVIGSP
Sbjct: 228  LVHRLDRDCSGILVMGRTQTSATVLHAIFREKTLAASNDDVGNKRRILQRKYWALVIGSP 287

Query: 282  ARQRGIISAPLGRIVVDNGKSERITIMNNSQTMSSQHAITEYRVIESSSHGYTWVELFPL 103
             R +G+ISAPLG++VVDNGKS+RIT++ NSQ +SSQHA+T+YRVIE SSHG+TW+EL PL
Sbjct: 288  RRPKGLISAPLGKVVVDNGKSDRITVVENSQNLSSQHAVTQYRVIE-SSHGFTWLELSPL 346

Query: 102  TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHKKWK 1
            TGRKHQLRVHCAEVLGTPIVGDYKY WQ H+ WK
Sbjct: 347  TGRKHQLRVHCAEVLGTPIVGDYKYAWQAHRNWK 380


>ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
            gi|462395209|gb|EMJ01008.1| hypothetical protein
            PRUPE_ppa004969mg [Prunus persica]
          Length = 481

 Score =  482 bits (1241), Expect = e-133
 Identities = 257/406 (63%), Positives = 304/406 (74%), Gaps = 13/406 (3%)
 Frame = -1

Query: 1179 MVDLYLLRRAFLRSPICTAAAALKASRICISVVHEKRPHYTTASQSVXXXXXXXXXXXXK 1000
            M+   LLRR  LR P  + A      R+CIS  H  R + TT +                
Sbjct: 1    MMGPILLRRLLLRPPPSSTA------RLCISAFHNWRSYATTET-------FHEDREKRG 47

Query: 999  GKWFTLPPFTSTVDASSLGKELSGQRMSGIDSKMANGYASIS-----ALKWVVRCCPQLP 835
             KWFTLPPFT+T++ S+LGKELS  R  G D       AS +     ALKWV RCCP+LP
Sbjct: 48   EKWFTLPPFTATINGSALGKELSRNRSYGRDVITKTATASTTSTTTTALKWVTRCCPELP 107

Query: 834  RSLVQKLFRLRQVRRESPNTTSESDGSCQEQKRRVTRVAAKDSMNLGDRIFLPITVQQFP 655
            RSLVQKLFRLRQVRRES +     +G  +  +R + RVAAKDSMN+GDRI LP++VQ+FP
Sbjct: 108  RSLVQKLFRLRQVRRESCDMECSGEG-VEALERPLKRVAAKDSMNVGDRIHLPLSVQEFP 166

Query: 654  SQKHE-------CHCNEEETGFIRNLELYKDSAIIVVNKPPGLSVQGGIGIQKSLDELAA 496
            + K E       C+C+EEE  FIR+LELYKD AIIV+NKPPG+ VQGGIGI++SLDELAA
Sbjct: 167  NDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAA 226

Query: 495  TCLRYDYSEPPRLVHRLDRDSSGILVMGRTQTSSTVLHSIFREKTFGA-NEDIGSKKRIL 319
             CL YD+SEPPRLVHRLDRDSSGILVMGRTQTS+TVLHSIFREKTFGA N++I   KRIL
Sbjct: 227  ACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFGASNDEIDDAKRIL 286

Query: 318  ERRYLALVIGSPARQRGIISAPLGRIVVDNGKSERITIMNNSQTMSSQHAITEYRVIESS 139
            +RRY ALVIGSP +++G+ISAPLG++VVDNGKS+RITI+N+SQT+ SQHAIT+Y+VI S 
Sbjct: 287  QRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPSQHAITKYKVIGSP 346

Query: 138  SHGYTWVELFPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHKKWK 1
               YTW+EL PLTGRKHQLRVHCAEVL TPIVGDYKYGWQTH+ WK
Sbjct: 347  C--YTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWK 390


>gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  481 bits (1238), Expect = e-133
 Identities = 248/389 (63%), Positives = 296/389 (76%), Gaps = 1/389 (0%)
 Frame = -1

Query: 1164 LLRRAFLRSPICTAAAALKASRICISVVHEKRPHYTTASQSVXXXXXXXXXXXXKGKWFT 985
            LLRR  L SP  TA   +  +++  S  H    HY+ +S+                KWFT
Sbjct: 6    LLRRLLLLSPPRTADHCV--AKLSPSTFHYHLSHYSASSEK------------NGTKWFT 51

Query: 984  LPPFTSTVDASSLGKELSGQRMSGIDSKMANGYASISALKWVVRCCPQLPRSLVQKLFRL 805
            LPP T+TVD + LGK ++G +   +    A+  A+ +ALKWVVRCCP+LPRSLVQKLFRL
Sbjct: 52   LPPHTATVDGAVLGKAIAGAKDDDVKVLQASKSAATTALKWVVRCCPELPRSLVQKLFRL 111

Query: 804  RQVRRESPNTTSESDGSCQEQKRRVTRVAAKDSMNLGDRIFLPITVQQFPSQKHECHCNE 625
            RQVRRES N    + G  Q  K R+ RV+AKDS+NLGD+IFLPI+V++ P +K EC CNE
Sbjct: 112  RQVRRESFNVEDCNAGD-QLGKPRLRRVSAKDSLNLGDKIFLPISVKELPVEKKECFCNE 170

Query: 624  EETGFIRNLELYKDSAIIVVNKPPGLSVQGGIGIQKSLDELAATCLRYDYSEPPRLVHRL 445
            EE  FIR+LELYKD AI+VVNKPPGL VQGGIGI+ SLD+LA TCL YDY+EPPRLVHRL
Sbjct: 171  EEVKFIRSLELYKDPAIVVVNKPPGLPVQGGIGIKTSLDQLAVTCLSYDYTEPPRLVHRL 230

Query: 444  DRDSSGILVMGRTQTSSTVLHSIFREKTFGANEDIGSK-KRILERRYLALVIGSPARQRG 268
            DRD SGILVMGRTQTS+TVLHSIFREKTFGA+ D   K K +L+RRY A VIGSP    G
Sbjct: 231  DRDCSGILVMGRTQTSATVLHSIFREKTFGASNDETVKGKIVLQRRYWAFVIGSPRHPNG 290

Query: 267  IISAPLGRIVVDNGKSERITIMNNSQTMSSQHAITEYRVIESSSHGYTWVELFPLTGRKH 88
            +ISAPL ++V+DNGKS+RIT++N S T+SSQHAIT+Y+VI SSSHGYTW+EL PLTGRKH
Sbjct: 291  LISAPLRKVVLDNGKSDRITVVNGSHTLSSQHAITKYKVIGSSSHGYTWLELSPLTGRKH 350

Query: 87   QLRVHCAEVLGTPIVGDYKYGWQTHKKWK 1
            QLRVHCAEVLGTP+VGDYKYGWQ H+ WK
Sbjct: 351  QLRVHCAEVLGTPMVGDYKYGWQAHRDWK 379


>ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina]
            gi|557524859|gb|ESR36165.1| hypothetical protein
            CICLE_v10028283mg [Citrus clementina]
          Length = 494

 Score =  473 bits (1218), Expect = e-131
 Identities = 231/334 (69%), Positives = 281/334 (84%), Gaps = 1/334 (0%)
 Frame = -1

Query: 999  GKWFTLPPFTSTVDASSLGKELSGQRMSGIDSKMANGYASISALKWVVRCCPQLPRSLVQ 820
            GKWFTLPPFTST+D S+LG++L+    S I        +  +ALKWV++CCP LPR+ VQ
Sbjct: 79   GKWFTLPPFTSTIDGSALGRQLACPSKSPI--------SETTALKWVLQCCPGLPRNFVQ 130

Query: 819  KLFRLRQVRRESPNTTSESDGSCQEQKRRVTRVAAKDSMNLGDRIFLPITVQQFPSQKHE 640
            KLFRL QVRRESP+  S ++    EQ+ ++ RVAAKDS+ LGDRIFLPI++Q+ PS+K +
Sbjct: 131  KLFRLSQVRRESPSLDSSANEG-HEQEIKLKRVAAKDSLKLGDRIFLPISIQESPSRKEK 189

Query: 639  CHCNEEETGFIRNLELYKDSAIIVVNKPPGLSVQGGIGIQKSLDELAATCLRYDYSEPPR 460
            C C EEE GFI++LELYKDSAIIV+NKP G+ VQGGIGI++S+DELAATCL YDYSEPPR
Sbjct: 190  CPCTEEEVGFIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYDYSEPPR 249

Query: 459  LVHRLDRDSSGILVMGRTQTSSTVLHSIFREKTFGAN-EDIGSKKRILERRYLALVIGSP 283
            LVHRLDRDSSGILVMGRTQTS+TVLHSIFREKTF A+ ED  ++KRIL+R Y ALV+G+P
Sbjct: 250  LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 309

Query: 282  ARQRGIISAPLGRIVVDNGKSERITIMNNSQTMSSQHAITEYRVIESSSHGYTWVELFPL 103
               +G+ISAPL ++VVDNGKS+RIT++NN Q MS+QHA+T Y+VI+ S HGYTW++L PL
Sbjct: 310  RCSKGVISAPLRKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 369

Query: 102  TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHKKWK 1
            TGRKHQLRVHCAEVLGTPIVGDYKYGWQTH+KWK
Sbjct: 370  TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 403


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 536

 Score =  467 bits (1202), Expect = e-129
 Identities = 231/334 (69%), Positives = 273/334 (81%), Gaps = 1/334 (0%)
 Frame = -1

Query: 999  GKWFTLPPFTSTVDASSLGKELSGQRMSGIDSKMANGYASISALKWVVRCCPQLPRSLVQ 820
            GK+FTLPP+TST+  S+LGK LS        +  A      +ALKWV+RCCP+LPR+LVQ
Sbjct: 126  GKFFTLPPYTSTISGSALGKALSA-------TATAKASTETTALKWVLRCCPELPRNLVQ 178

Query: 819  KLFRLRQVRRESPNTTSESDGSCQEQKRRVTRVAAKDSMNLGDRIFLPITVQQFPSQKHE 640
            KLFRLRQV+RE  N     DG   E + +  RVAAKD MN+GDRIFLPI+VQ  P +K +
Sbjct: 179  KLFRLRQVKRELLNV---GDG---EMEHKTKRVAAKDLMNVGDRIFLPISVQALPFEKQK 232

Query: 639  CHCNEEETGFIRNLELYKDSAIIVVNKPPGLSVQGGIGIQKSLDELAATCLRYDYSEPPR 460
            CHC E+E  FIR LELYKD AIIVVNKPPG+ VQGGIGI+ S DELAA+CL YDYSEPPR
Sbjct: 233  CHCGEKEANFIRGLELYKDEAIIVVNKPPGMPVQGGIGIKSSFDELAASCLSYDYSEPPR 292

Query: 459  LVHRLDRDSSGILVMGRTQTSSTVLHSIFREKTFGA-NEDIGSKKRILERRYLALVIGSP 283
            LVHRLDRDSSGILVMGRTQTS+ VLHS+FREKTF A N DIG ++RIL+R+Y ALVIGSP
Sbjct: 293  LVHRLDRDSSGILVMGRTQTSTMVLHSVFREKTFAASNHDIGERRRILQRKYWALVIGSP 352

Query: 282  ARQRGIISAPLGRIVVDNGKSERITIMNNSQTMSSQHAITEYRVIESSSHGYTWVELFPL 103
             RQ+GIISAPLG++VVD+GKS+RIT++ N+++ S QHA+T+YRV+E SSHGY W+EL P+
Sbjct: 353  RRQKGIISAPLGKVVVDDGKSDRITVVENAESTSFQHAVTQYRVME-SSHGYAWLELSPI 411

Query: 102  TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHKKWK 1
            TGRKHQLRVHCAEVLGTPIVGDYKYGWQ H+KWK
Sbjct: 412  TGRKHQLRVHCAEVLGTPIVGDYKYGWQVHRKWK 445


>ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Fragaria
            vesca subsp. vesca]
          Length = 476

 Score =  466 bits (1199), Expect = e-129
 Identities = 248/395 (62%), Positives = 296/395 (74%), Gaps = 2/395 (0%)
 Frame = -1

Query: 1179 MVDLYLLRRAFLRSPICTAAAALKASRICISVVHEKRPHYTTASQSVXXXXXXXXXXXXK 1000
            M +  LLRR  LR P+ +++A     RI     H  R + TT +                
Sbjct: 1    MPNRLLLRRILLRPPLSSSSAESAVDRI----FHTFRSYSTTQT-------VHEDKQKRG 49

Query: 999  GKWFTLPPFTSTVDASSLGKELSGQRMSGIDSKMANGYASISALKWVVRCCPQLPRSLVQ 820
             KWFTLPPFT TV+ ++LG+ELS      + +K  +  A+ +ALKWV RCCP++PR+LVQ
Sbjct: 50   NKWFTLPPFTDTVNGAALGRELSRSVGRDVYAK-PSAAAATTALKWVTRCCPEIPRNLVQ 108

Query: 819  KLFRLRQVRRESPNTTSESDGSCQEQKRRVTRVAAKDSMNLGDRIFLPITVQQFPSQKH- 643
            KLFRLRQVRRE+    S+ D S Q  KR    V  KDSMNLGDRI LPI+V++FP  K  
Sbjct: 109  KLFRLRQVRREA----SDMDQSVQPLKR----VGTKDSMNLGDRICLPISVKEFPDHKQK 160

Query: 642  ECHCNEEETGFIRNLELYKDSAIIVVNKPPGLSVQGGIGIQKSLDELAATCLRYDYSEPP 463
            E HC+EEE  FIR+L LYKD AIIV+NKPPGL VQGGIGI++SLDELAATCL YD S+PP
Sbjct: 161  EGHCSEEEAEFIRSLVLYKDPAIIVINKPPGLPVQGGIGIKRSLDELAATCLSYDLSQPP 220

Query: 462  RLVHRLDRDSSGILVMGRTQTSSTVLHSIFREKTFGANED-IGSKKRILERRYLALVIGS 286
            RLVHRLDRD SGILVMGRTQTS+TVLHS+FREKTFGA++D I   K IL+RRYLALVIGS
Sbjct: 221  RLVHRLDRDCSGILVMGRTQTSATVLHSVFREKTFGASDDVIKHAKSILQRRYLALVIGS 280

Query: 285  PARQRGIISAPLGRIVVDNGKSERITIMNNSQTMSSQHAITEYRVIESSSHGYTWVELFP 106
            P +Q G+IS PLG++VVDNGKS+RITI+N +Q + SQHAIT+Y+VI SS  G+TW+EL P
Sbjct: 281  PRQQEGLISVPLGKVVVDNGKSDRITILNKAQCLPSQHAITKYKVIGSSCPGFTWLELIP 340

Query: 105  LTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHKKWK 1
            LTGRKHQLRVHCAEVLGTPIVGDYKYGW+THK WK
Sbjct: 341  LTGRKHQLRVHCAEVLGTPIVGDYKYGWRTHKDWK 375


>ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
            gi|508706469|gb|EOX98365.1| Ribosomal pseudouridine
            synthase, putative [Theobroma cacao]
          Length = 477

 Score =  455 bits (1171), Expect = e-125
 Identities = 232/369 (62%), Positives = 288/369 (78%), Gaps = 3/369 (0%)
 Frame = -1

Query: 1098 ICISVVHEKRPHYTTASQ--SVXXXXXXXXXXXXKGKWFTLPPFTSTVDASSLGKELSGQ 925
            + +S  H+ R HY+T ++  +             K KWFTLPPFT TV+AS LG +LSG+
Sbjct: 26   LIVSAFHQLRYHYSTTNELSAEHLKDDGNSEKKKKNKWFTLPPFTKTVNASVLGAKLSGK 85

Query: 924  RMSGIDSKMANGYASISALKWVVRCCPQLPRSLVQKLFRLRQVRRESPNTTSESDGSCQE 745
                  SK AN     +A+KWV+RCCP+LPRSLVQKLFRLRQVRRES       DG CQ 
Sbjct: 86   P----HSKAAN---ETTAVKWVMRCCPELPRSLVQKLFRLRQVRRESHVLEVAGDG-CQV 137

Query: 744  QKRRVTRVAAKDSMNLGDRIFLPITVQQFPSQKHECHCNEEETGFIRNLELYKDSAIIVV 565
            Q  ++ RV AKD++N+GDRIFLP +V++F  +K E  C EEE  FIR LELYKD AIIV+
Sbjct: 138  QTVQLKRVGAKDALNIGDRIFLPFSVREFREEKQESGCTEEELNFIRGLELYKDPAIIVL 197

Query: 564  NKPPGLSVQGGIGIQKSLDELAATCLRYDYSEPPRLVHRLDRDSSGILVMGRTQTSSTVL 385
            NKPPG+ VQGGIGI+ SLD+LAA CL +DYSEPPRLVHRLDRDSSGILVMGRTQ S+T+L
Sbjct: 198  NKPPGMPVQGGIGIKWSLDKLAAACLCFDYSEPPRLVHRLDRDSSGILVMGRTQMSATIL 257

Query: 384  HSIFREKTFGAN-EDIGSKKRILERRYLALVIGSPARQRGIISAPLGRIVVDNGKSERIT 208
            HS+FRE+T  A+ +D+ ++KRIL++RY ALVIGSP R +G+I APL ++VVD+GKS+RIT
Sbjct: 258  HSVFREETNDASKDDVDNEKRILQKRYWALVIGSPRRPKGMIVAPLRKVVVDDGKSDRIT 317

Query: 207  IMNNSQTMSSQHAITEYRVIESSSHGYTWVELFPLTGRKHQLRVHCAEVLGTPIVGDYKY 28
            + +NSQ +SSQ A TEY+VI+++SHGYTW+EL PLTGRKHQLRVHCAEVLGTPIVGDYKY
Sbjct: 318  VFDNSQIVSSQRAKTEYQVIKTTSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKY 377

Query: 27   GWQTHKKWK 1
            GWQ H++W+
Sbjct: 378  GWQAHRRWQ 386


>ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Solanum
            tuberosum]
          Length = 467

 Score =  434 bits (1117), Expect = e-119
 Identities = 235/395 (59%), Positives = 293/395 (74%), Gaps = 2/395 (0%)
 Frame = -1

Query: 1179 MVDLYLLRRAFLRSPICTAAAALKASRICISVVHEKRPHYTTASQSVXXXXXXXXXXXXK 1000
            M   +LLRR   RS    AA+     +   S  +  + HY T   +V            K
Sbjct: 1    MAGPWLLRRVVHRSRQLFAAS--DDVQTLYSAFYRFQCHYAT---TVTAAQVCNRNENEK 55

Query: 999  GKWFTLPPFTSTVDASSLGKELSGQRMSGIDSKMANGYASISALKWVVRCCPQLPRSLVQ 820
             KW TLPPFT+TV+ ++LG+EL+G +M   D K  N   +++ALKWV RCCP+LP+SLVQ
Sbjct: 56   AKWLTLPPFTATVNGAALGRELAGVKM---DVK-ENSTNTMTALKWVQRCCPELPKSLVQ 111

Query: 819  KLFRLRQVRRESPNTTSESDGSCQEQKRRVTRVAAKDSMNLGDRIFLPITVQQFPSQKHE 640
            KLFRLRQVRR+S N           +++R  RV+AK+SMN+GDRIFLPITVQ+FPS+K  
Sbjct: 112  KLFRLRQVRRDSSNV----------EEQRPKRVSAKESMNVGDRIFLPITVQKFPSEKVV 161

Query: 639  CH-CNEEETGFIRNLELYKDSAIIVVNKPPGLSVQGGIGIQKSLDELAATCLRYDYSEPP 463
             +  +EEE  F+ +LELYKD  I+VVNKPPG+ VQGGIGI++SLDELAA  +R++YSE P
Sbjct: 162  YYPSSEEERKFVHSLELYKDPEIVVVNKPPGMPVQGGIGIKRSLDELAAKYMRHEYSEAP 221

Query: 462  RLVHRLDRDSSGILVMGRTQTSSTVLHSIFREKTFGA-NEDIGSKKRILERRYLALVIGS 286
            RLVHRLDRD SG+LVMGRTQ S++ LHSIFREKTF + NED+ SKKRIL+++Y ALVIG 
Sbjct: 222  RLVHRLDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQKKYWALVIGC 281

Query: 285  PARQRGIISAPLGRIVVDNGKSERITIMNNSQTMSSQHAITEYRVIESSSHGYTWVELFP 106
            P R  GIISAPLG++V+DNGKSERITIM++ +  S+Q+A+TEYR+I SS  GYTW+EL P
Sbjct: 282  PRRSGGIISAPLGKLVLDNGKSERITIMSDVRAPSAQYAVTEYRIIGSSEKGYTWLELSP 341

Query: 105  LTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHKKWK 1
            LTGRKHQLRVHCAE LGTPIVGDYKYGWQ H+K K
Sbjct: 342  LTGRKHQLRVHCAEALGTPIVGDYKYGWQAHRKLK 376


>ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum
            lycopersicum]
          Length = 467

 Score =  431 bits (1108), Expect = e-118
 Identities = 231/391 (59%), Positives = 289/391 (73%), Gaps = 2/391 (0%)
 Frame = -1

Query: 1167 YLLRRAFLRSPICTAAAALKASRICISVVHEKRPHYTTASQSVXXXXXXXXXXXXKGKWF 988
            +L RR F RS    AA+     +   S  +  + HY T   +V            K KW 
Sbjct: 5    WLFRRVFHRSRQLFAAS--DDVQTLYSAFYRLQCHYAT---TVTDAQVCNRNENEKAKWL 59

Query: 987  TLPPFTSTVDASSLGKELSGQRMSGIDSKMANGYASISALKWVVRCCPQLPRSLVQKLFR 808
            TLPPFT+ V+ ++LG+EL+G +M   +    N   +++ALKWV RCCP+LP+SLVQKLFR
Sbjct: 60   TLPPFTAAVNGAALGRELAGVKMDVNE----NSTNTMTALKWVQRCCPELPKSLVQKLFR 115

Query: 807  LRQVRRESPNTTSESDGSCQEQKRRVTRVAAKDSMNLGDRIFLPITVQQFPSQKHECH-C 631
            LRQVRR+S N           +++R  RV+AK+SMN+GDRIFLPITVQ+FPS+K   +  
Sbjct: 116  LRQVRRDSSNV----------EEQRPKRVSAKESMNVGDRIFLPITVQKFPSEKVVYYPS 165

Query: 630  NEEETGFIRNLELYKDSAIIVVNKPPGLSVQGGIGIQKSLDELAATCLRYDYSEPPRLVH 451
            +EEE  F+ +LELYKD+ IIVVNKPPG+ VQGGIGI++SLDELAA  + + YSE PRLVH
Sbjct: 166  SEEERKFVHSLELYKDAEIIVVNKPPGMPVQGGIGIKRSLDELAAKYMSHQYSEAPRLVH 225

Query: 450  RLDRDSSGILVMGRTQTSSTVLHSIFREKTFGA-NEDIGSKKRILERRYLALVIGSPARQ 274
            RLDRD SG+LVMGRTQ S++ LHSIFREKTF + NED+ SKKRIL+++Y ALVIG P R 
Sbjct: 226  RLDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQKKYWALVIGCPRRS 285

Query: 273  RGIISAPLGRIVVDNGKSERITIMNNSQTMSSQHAITEYRVIESSSHGYTWVELFPLTGR 94
             GIISAPLG++V+DNGKSERITIM++ +  S+Q+A+TEYR+I SS  GYTW+EL PLTGR
Sbjct: 286  GGIISAPLGKLVLDNGKSERITIMSDVREPSAQYAVTEYRIIGSSEKGYTWLELSPLTGR 345

Query: 93   KHQLRVHCAEVLGTPIVGDYKYGWQTHKKWK 1
            KHQLRVHCAE LGTPIVGDYKYGWQ H+K K
Sbjct: 346  KHQLRVHCAEALGTPIVGDYKYGWQAHRKLK 376


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
            sativus]
          Length = 471

 Score =  421 bits (1083), Expect = e-115
 Identities = 207/335 (61%), Positives = 271/335 (80%), Gaps = 3/335 (0%)
 Frame = -1

Query: 996  KWFTLPPFTSTVDASSLGKELSGQRMSGIDSKMANGYASISALKWVVRCCPQLPRSLVQK 817
            +WFTLPP+T+TV+ S LG  +      G  +++    A+I+ALKWV+RCCP+LPRSLVQK
Sbjct: 59   RWFTLPPYTATVNGSILGNRIMN---GGGQAELGASTAAITALKWVIRCCPELPRSLVQK 115

Query: 816  LFRLRQVRRESPNTTSESDGSCQEQKRRVTRVAAKDSMNLGDRIFLPITVQQFPSQKHEC 637
            LFRLR+VRR S  +  E+     E + ++ RVAAKD +N+GD+IFLP++VQ F ++K   
Sbjct: 116  LFRLRKVRRGS--SMIENSEYNLEARDQLKRVAAKDILNVGDQIFLPMSVQVFSTEKTRD 173

Query: 636  HCNEEETGFIRNLELYKDSAIIVVNKPPGLSVQGGIGIQKSLDELAATCLRYDYSEPPRL 457
            +CN+EE  F+ +L L+KD AI+V+NKPPGL VQGGIG+++SLDELAA+CL Y YSEPPRL
Sbjct: 174  YCNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPPRL 233

Query: 456  VHRLDRDSSGILVMGRTQTSSTVLHSIFREKTFGANE---DIGSKKRILERRYLALVIGS 286
            VHRLDRDSSGIL+MGRT TS+++LHS+FREKTF A++    + S+K+IL +RY ALVIGS
Sbjct: 234  VHRLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLKRYWALVIGS 293

Query: 285  PARQRGIISAPLGRIVVDNGKSERITIMNNSQTMSSQHAITEYRVIESSSHGYTWVELFP 106
            P R +G+I+APLG+IV+D+G+SE+I +++N++ M  Q AIT+Y+VI+ S HGYTW+EL P
Sbjct: 294  PRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVIK-SHHGYTWLELCP 352

Query: 105  LTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHKKWK 1
            LTGRKHQLRVHCAEVLGTPIVGDYKYGWQ HK WK
Sbjct: 353  LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWK 387


>ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
            sativus]
          Length = 466

 Score =  418 bits (1074), Expect = e-114
 Identities = 204/335 (60%), Positives = 267/335 (79%), Gaps = 3/335 (0%)
 Frame = -1

Query: 996  KWFTLPPFTSTVDASSLGKELSGQRMSGIDSKMANGYASISALKWVVRCCPQLPRSLVQK 817
            +WFTLPP+T+TV+ S LG  +      G  +++    A+I+ALKWV+RCCP+LPRSLVQK
Sbjct: 59   RWFTLPPYTATVNGSILGNRIMN---GGGQAELGASTAAITALKWVIRCCPELPRSLVQK 115

Query: 816  LFRLRQVRRESPNTTSESDGSCQEQKRRVTRVAAKDSMNLGDRIFLPITVQQFPSQKHEC 637
            LFRLR+V R+        +  C     ++ RVAAKD +N+GD+IFLP++VQ F ++K   
Sbjct: 116  LFRLRKVPRQL-------NVGCGNSHHQLKRVAAKDILNVGDQIFLPMSVQVFSTEKTRD 168

Query: 636  HCNEEETGFIRNLELYKDSAIIVVNKPPGLSVQGGIGIQKSLDELAATCLRYDYSEPPRL 457
            +CN+EE  F+ +L L+KD AI+V+NKPPGL VQGGIG+++SLDELAA+CL Y YSEPPRL
Sbjct: 169  YCNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPPRL 228

Query: 456  VHRLDRDSSGILVMGRTQTSSTVLHSIFREKTFGANE---DIGSKKRILERRYLALVIGS 286
            VHRLDRDSSGIL+MGRT TS+++LHS+FREKTF A++    + S+K+IL +RY ALVIGS
Sbjct: 229  VHRLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLKRYWALVIGS 288

Query: 285  PARQRGIISAPLGRIVVDNGKSERITIMNNSQTMSSQHAITEYRVIESSSHGYTWVELFP 106
            P R +G+I+APLG+IV+D+G+SE+I +++N++ M  Q AIT+Y+VI+ S HGYTW+EL P
Sbjct: 289  PRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVIK-SHHGYTWLELCP 347

Query: 105  LTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHKKWK 1
            LTGRKHQLRVHCAEVLGTPIVGDYKYGWQ HK WK
Sbjct: 348  LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWK 382


>ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutrema salsugineum]
            gi|557107647|gb|ESQ47954.1| hypothetical protein
            EUTSA_v10020633mg [Eutrema salsugineum]
          Length = 477

 Score =  413 bits (1062), Expect = e-113
 Identities = 224/387 (57%), Positives = 283/387 (73%), Gaps = 5/387 (1%)
 Frame = -1

Query: 1155 RAFLRSPICTAAAALKASRICISVVHEKRPHYTTASQSVXXXXXXXXXXXXKGKWFTLPP 976
            R  LRSP  T ++  +     +S  +++R + T  +               +GKW TLPP
Sbjct: 12   RRHLRSPSPTISSVFRDPSGALSAANQRRSYGTPLADD--------DDDDPRGKWLTLPP 63

Query: 975  FTSTVDASSLGKELSGQRMSGIDSKMANGYASISALKWVVRCCPQLPRSLVQKLFRLRQV 796
            F+ T+DA+++GKEL     S  DS  A+   S +AL+W++RC P LPR+LVQKLFRLRQV
Sbjct: 64   FSPTIDAAAVGKEL----FSDGDSVKASSDGSTTALRWILRCRPDLPRTLVQKLFRLRQV 119

Query: 795  RRESPNTTSESDGSCQEQKRRVTRVAAKDSMNLGDRIFLPITVQQF---PSQKHECHCNE 625
            RRE    +   DG  + Q+ ++ RVAAK+S+NLGDRI+LP++V      P++K    C+E
Sbjct: 120  RREM---SLSCDGD-ELQRSQLKRVAAKESLNLGDRIYLPLSVNNDAPPPAKKESFCCSE 175

Query: 624  EETGFIRNLELYKDSAIIVVNKPPGLSVQGGIGIQKSLDELAATCLRYDYSEPPRLVHRL 445
            EE  F+ +L LYKD AIIV+NKP GL+VQGG GI+ S+DELAATCL +  SE PRLVHRL
Sbjct: 176  EERKFVCSLVLYKDPAIIVLNKPHGLAVQGGTGIKISIDELAATCLTFGKSESPRLVHRL 235

Query: 444  DRDSSGILVMGRTQTSSTVLHSIFREKTFGANEDIGSKKRI--LERRYLALVIGSPARQR 271
            DRD SG+LV+GRTQT++TVLHSIFREKT GA+     KK I  L+R+YLALVIG P RQR
Sbjct: 236  DRDCSGLLVLGRTQTAATVLHSIFREKTSGASA-YSVKKNIKSLKRKYLALVIGCPRRQR 294

Query: 270  GIISAPLGRIVVDNGKSERITIMNNSQTMSSQHAITEYRVIESSSHGYTWVELFPLTGRK 91
            G ISAPL ++VVD+GKS+RIT+ +N + +S+QHAITEYRVIESS HGYTW+EL PLTGRK
Sbjct: 295  GQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRK 354

Query: 90   HQLRVHCAEVLGTPIVGDYKYGWQTHK 10
            HQLRVHCAEVLGTPI+GDYKYGWQ HK
Sbjct: 355  HQLRVHCAEVLGTPILGDYKYGWQAHK 381


>gb|EYU42699.1| hypothetical protein MIMGU_mgv1a006097mg [Mimulus guttatus]
          Length = 457

 Score =  408 bits (1049), Expect = e-111
 Identities = 207/338 (61%), Positives = 257/338 (76%), Gaps = 8/338 (2%)
 Frame = -1

Query: 996  KWFTLPPFTSTVDASSLGKELSGQRMSGIDSKMANGYASISALKWVVRCCPQLPRSLVQK 817
            +W TLPPF    D  S+GK LSGQ             A  +ALKW+++CCP +PR LVQK
Sbjct: 46   QWLTLPPFNPNADGCSIGKRLSGQPAD----------AKTTALKWILKCCPHIPRCLVQK 95

Query: 816  LFRLRQV-----RRESPNTTSESDGSCQEQKRRVTRVAAKDSMNLGDRIFLPITVQ-QFP 655
            LFRLRQV     R+ES N         +++++R  R+ AKD M++GDRIFLP +V    P
Sbjct: 96   LFRLRQVHFLLIRKESSNM--------EDKEQRPKRIGAKDLMDIGDRIFLPKSVDGTSP 147

Query: 654  SQKHECH--CNEEETGFIRNLELYKDSAIIVVNKPPGLSVQGGIGIQKSLDELAATCLRY 481
            S   E     +E+E  F+R+LELYKD AIIV+NKPPGL VQGGIGI++SLDELAA  L++
Sbjct: 148  STTAESRNFFDEKEMEFVRSLELYKDPAIIVINKPPGLPVQGGIGIKRSLDELAAKYLKF 207

Query: 480  DYSEPPRLVHRLDRDSSGILVMGRTQTSSTVLHSIFREKTFGANEDIGSKKRILERRYLA 301
            D++E PRLVHRLDRDSSGILVMGRTQ S+T+LHS+FREKTFGA+ ++   K+IL+++Y A
Sbjct: 208  DFTESPRLVHRLDRDSSGILVMGRTQLSTTILHSVFREKTFGASNNVCGNKKILQKKYWA 267

Query: 300  LVIGSPARQRGIISAPLGRIVVDNGKSERITIMNNSQTMSSQHAITEYRVIESSSHGYTW 121
            LVIGSP R+ G+IS PL ++V+DNGKSERIT+  N+ T+S+QHA+TEYRVI SSS GY+W
Sbjct: 268  LVIGSPRRREGLISVPLVKVVLDNGKSERITVAENNNTLSAQHAVTEYRVIASSSRGYSW 327

Query: 120  VELFPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHKK 7
            +EL PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ HKK
Sbjct: 328  LELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKK 365


>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
            gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
            pseudouridine synthase 4, mitochondrial; AltName:
            Full=RNA pseudouridylate synthase 4; AltName:
            Full=RNA-uridine isomerase 4; Flags: Precursor
            gi|11994467|dbj|BAB02469.1| unnamed protein product
            [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
            thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
            synthase 4 [Arabidopsis thaliana]
          Length = 477

 Score =  406 bits (1043), Expect = e-110
 Identities = 209/337 (62%), Positives = 264/337 (78%), Gaps = 7/337 (2%)
 Frame = -1

Query: 999  GKWFTLPPFTSTVDASSLGKELSGQRMSGIDSKMANGYASISALKWVVRCCPQLPRSLVQ 820
            GKW TLPPF+ T+D +++GK+L      G   K +   +  +AL+W++RC P LPR+LVQ
Sbjct: 53   GKWLTLPPFSPTIDGTAVGKDLLSD---GDSVKSSTDNSKTTALRWILRCRPDLPRTLVQ 109

Query: 819  KLFRLRQVRRESPNTTSESDGSCQEQKRRVTRVAAKDSMNLGDRIFLPITV-----QQFP 655
            KLFRLRQVRRE   +    DG  + Q+ ++ RVAAK+S+N+GDRI+LP++V     Q  P
Sbjct: 110  KLFRLRQVRREMSMSV---DGD-ELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPQTPP 165

Query: 654  SQKHECHCNEEETGFIRNLELYKDSAIIVVNKPPGLSVQGGIGIQKSLDELAATCLRYDY 475
            ++K    C++EE  F+ +L LYKD AIIV+NKP GL+VQGG GI+ S+DELAA+CL++D 
Sbjct: 166  AKKESFQCSDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDK 225

Query: 474  SEPPRLVHRLDRDSSGILVMGRTQTSSTVLHSIFREKTFGANEDIGSKKRI--LERRYLA 301
            SE PRLVHRLDRD SG+LV+ RTQT++TVLHSIFREKT GA+   G KK +  L+R+Y+A
Sbjct: 226  SESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGASA-YGVKKNVKSLKRKYMA 284

Query: 300  LVIGSPARQRGIISAPLGRIVVDNGKSERITIMNNSQTMSSQHAITEYRVIESSSHGYTW 121
            LVIG P RQRG ISAPL ++VVD+GKSERIT+ +N + +S+QHAITEYRVIESS HGYTW
Sbjct: 285  LVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTW 344

Query: 120  VELFPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHK 10
            +EL PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ HK
Sbjct: 345  LELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHK 381


>ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Capsella rubella]
            gi|482566291|gb|EOA30480.1| hypothetical protein
            CARUB_v10013603mg [Capsella rubella]
          Length = 476

 Score =  405 bits (1042), Expect = e-110
 Identities = 209/336 (62%), Positives = 263/336 (78%), Gaps = 6/336 (1%)
 Frame = -1

Query: 999  GKWFTLPPFTSTVDASSLGKELSGQRMSGIDSKMANGYASISALKWVVRCCPQLPRSLVQ 820
            GKW TLPPF+ TVD +++GKEL+ +   G     +   ++ +AL+W++RC P LPR+LVQ
Sbjct: 53   GKWLTLPPFSPTVDGTAVGKELASE---GDSITGSTDSSTTTALRWILRCRPDLPRTLVQ 109

Query: 819  KLFRLRQVRRESPNTTSESDGSCQEQKRRVTRVAAKDSMNLGDRIFLPITVQQF----PS 652
            KLFRLRQVRRE     S S    + Q+ ++ RVAAK+S+N+GDRI+LP++V       P+
Sbjct: 110  KLFRLRQVRREM----SVSCDGDEVQRSQLKRVAAKESLNVGDRIYLPLSVDNDAPPPPA 165

Query: 651  QKHECHCNEEETGFIRNLELYKDSAIIVVNKPPGLSVQGGIGIQKSLDELAATCLRYDYS 472
            +K    C+EEE  F+ +L LYKD +IIV+NKP G++VQGG GI+ S+DELAATCL +D S
Sbjct: 166  KKESFRCSEEERKFVCSLVLYKDPSIIVLNKPHGMAVQGGTGIKTSIDELAATCLTFDKS 225

Query: 471  EPPRLVHRLDRDSSGILVMGRTQTSSTVLHSIFREKTFGANEDIGSKKRI--LERRYLAL 298
            E PRLVHRLDRD SG+LV+ RTQT++TVLHSIFREKT GA+   G KK I  L+R+Y+AL
Sbjct: 226  ESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTSGASA-YGVKKNIKSLKRKYMAL 284

Query: 297  VIGSPARQRGIISAPLGRIVVDNGKSERITIMNNSQTMSSQHAITEYRVIESSSHGYTWV 118
            VIG P RQRG ISAPL ++VVD+GKS+RIT+ +N + +S+QHAITEYRVIESS HGYTW+
Sbjct: 285  VIGCPRRQRGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYRVIESSPHGYTWL 344

Query: 117  ELFPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHK 10
            EL PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ HK
Sbjct: 345  ELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHK 380


>ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [Amborella trichopoda]
            gi|548850328|gb|ERN08832.1| hypothetical protein
            AMTR_s00015p00025410 [Amborella trichopoda]
          Length = 457

 Score =  402 bits (1033), Expect = e-109
 Identities = 212/372 (56%), Positives = 268/372 (72%), Gaps = 2/372 (0%)
 Frame = -1

Query: 1110 KASRICISVVHEKRPHYTTASQSVXXXXXXXXXXXXKGKWFTLPPFTSTVDASSLGKELS 931
            K+ R+ +S+ H       +AS S             + KWFTLP F      +SL   +S
Sbjct: 14   KSHRLLLSLTH----FTLSASLSTTASLEEDKEVRRQCKWFTLPSFPG----ASLSPSIS 65

Query: 930  GQRMSGIDSKMANGYASISALKWVVRCCPQLPRSLVQKLFRLRQVRRESPNTTSESDGSC 751
                    +K A    S +ALKWV+RCCPQ+PRSL+QKLFRLRQVR+ES N    S    
Sbjct: 66   -------TAKTAKA-PSTTALKWVLRCCPQVPRSLIQKLFRLRQVRKESLNPAIASCLHK 117

Query: 750  QEQKRRVTRVAAKDSMNLGDRIFLPITVQQFPSQKHECHCNEEETGFIRNLELYKDSAII 571
            Q Q +++ RV AKD++N GDRIFLPITV      + +  CN+EE  +IR+LE+YKD+AI+
Sbjct: 118  QAQYQQIKRVFAKDTLNSGDRIFLPITVNPAVEVEDDYICNKEEMEYIRSLEVYKDAAIV 177

Query: 570  VVNKPPGLSVQGGIGIQKSLDELAATCLRYDYSEPPRLVHRLDRDSSGILVMGRTQTSST 391
            VVNKPPGL VQGG G++ SLD L A+ L+YDYSE PRLVHRLD+DSSGILVMGRTQ S+T
Sbjct: 178  VVNKPPGLPVQGGTGVKLSLDVLVASSLKYDYSEVPRLVHRLDQDSSGILVMGRTQESTT 237

Query: 390  VLHSIFREKTFGA--NEDIGSKKRILERRYLALVIGSPARQRGIISAPLGRIVVDNGKSE 217
            +LHSIFR+KT GA  N DI + K IL+R+Y ALVIG+P    G+ISAPL ++++D+GKSE
Sbjct: 238  LLHSIFRDKTCGASFNVDIKNSKIILKRKYWALVIGNPQPSEGLISAPLSKLLLDDGKSE 297

Query: 216  RITIMNNSQTMSSQHAITEYRVIESSSHGYTWVELFPLTGRKHQLRVHCAEVLGTPIVGD 37
            RIT+  +S+  S++HAITEYRV+ SS HG+TW+EL+P TGRKHQLRVHCAEVLGTPI+GD
Sbjct: 298  RITVSEDSKNKSARHAITEYRVLRSSGHGFTWLELYPRTGRKHQLRVHCAEVLGTPILGD 357

Query: 36   YKYGWQTHKKWK 1
            YKYGW  H+KWK
Sbjct: 358  YKYGWNAHRKWK 369


>ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297329022|gb|EFH59441.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 477

 Score =  402 bits (1032), Expect = e-109
 Identities = 215/389 (55%), Positives = 277/389 (71%), Gaps = 7/389 (1%)
 Frame = -1

Query: 1155 RAFLRSPICTAAAALKASRICISVVHEKRPHYTTASQSVXXXXXXXXXXXXKGKWFTLPP 976
            R  L+SP  T +A    ++   +  H     Y+TA                +G W TLPP
Sbjct: 12   RRHLQSPSPTISAFKDPTKSLSAAAHHCSRSYSTAQTD-----------DSRGNWLTLPP 60

Query: 975  FTSTVDASSLGKELSGQRMSGIDSKMANGYASISALKWVVRCCPQLPRSLVQKLFRLRQV 796
            F+ T+D +++GK+L      G   K +   +  +AL+W++RC P LPR+LVQKLFRLRQV
Sbjct: 61   FSPTIDGTAVGKDLLSD---GDSVKASTDNSKTTALRWILRCRPDLPRTLVQKLFRLRQV 117

Query: 795  RRESPNTTSESDGSCQEQKRRVTRVAAKDSMNLGDRIFLPITVQQF-----PSQKHECHC 631
            RR+     S S    + Q+ ++ RVAAK+S+N+GDRI+LP++V        P++K    C
Sbjct: 118  RRQM----SLSVDGHELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPPTPPAKKESFQC 173

Query: 630  NEEETGFIRNLELYKDSAIIVVNKPPGLSVQGGIGIQKSLDELAATCLRYDYSEPPRLVH 451
            +EEE  F+ +L LYKD AIIV+NKP GL+VQGG GI+ S+DELAATCL +D SE PRLVH
Sbjct: 174  SEEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAATCLTFDKSESPRLVH 233

Query: 450  RLDRDSSGILVMGRTQTSSTVLHSIFREKTFGANEDIGSKKRI--LERRYLALVIGSPAR 277
            RLDRD SG+LV+ RTQT++TVLHSIFREKT GA+   G KK I  L+R+Y+ALVIG P R
Sbjct: 234  RLDRDCSGLLVLARTQTAATVLHSIFREKTCGASA-YGVKKNIKSLKRKYMALVIGCPRR 292

Query: 276  QRGIISAPLGRIVVDNGKSERITIMNNSQTMSSQHAITEYRVIESSSHGYTWVELFPLTG 97
            Q+G ISAPL ++VVD+GKS+RIT+ +N + +S+QHAITEY+VIESS HGYTW+EL PLTG
Sbjct: 293  QKGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYKVIESSPHGYTWLELRPLTG 352

Query: 96   RKHQLRVHCAEVLGTPIVGDYKYGWQTHK 10
            RKHQLRVHCAEVLGTPI+GDYKYGWQ HK
Sbjct: 353  RKHQLRVHCAEVLGTPILGDYKYGWQAHK 381


>ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
           X1 [Citrus sinensis] gi|568867349|ref|XP_006487000.1|
           PREDICTED: RNA pseudouridine synthase 4,
           mitochondrial-like isoform X2 [Citrus sinensis]
          Length = 362

 Score =  400 bits (1027), Expect = e-109
 Identities = 193/268 (72%), Positives = 234/268 (87%), Gaps = 1/268 (0%)
 Frame = -1

Query: 801 QVRRESPNTTSESDGSCQEQKRRVTRVAAKDSMNLGDRIFLPITVQQFPSQKHECHCNEE 622
           QVRRESP+  S ++    EQ+ ++ RVAAKDS+ LGDRIFLPI++Q+ PS+K +C C EE
Sbjct: 5   QVRRESPSLDSSANEG-HEQEIKLKRVAAKDSLKLGDRIFLPISIQESPSRKEKCPCTEE 63

Query: 621 ETGFIRNLELYKDSAIIVVNKPPGLSVQGGIGIQKSLDELAATCLRYDYSEPPRLVHRLD 442
           E  FI++LELYKDSAIIV+NKP G+ VQGGIGI++S+DELAATCL YDYSEPPRLVHRLD
Sbjct: 64  EVEFIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLD 123

Query: 441 RDSSGILVMGRTQTSSTVLHSIFREKTFGAN-EDIGSKKRILERRYLALVIGSPARQRGI 265
           RDSSGILVMGRTQTS+TVLHSIFREKTF A+ ED  ++K+IL+R Y ALV+G+P   +G+
Sbjct: 124 RDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKKILQRWYWALVVGTPRCSKGV 183

Query: 264 ISAPLGRIVVDNGKSERITIMNNSQTMSSQHAITEYRVIESSSHGYTWVELFPLTGRKHQ 85
           ISAPLG++VVDNGKS+RIT++NN Q MS+QHA+T Y+VI+ S HGYTW++L PLTGRKHQ
Sbjct: 184 ISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQ 243

Query: 84  LRVHCAEVLGTPIVGDYKYGWQTHKKWK 1
           LRVHCAEVLGTPIVGDYKYGWQTH+KWK
Sbjct: 244 LRVHCAEVLGTPIVGDYKYGWQTHRKWK 271