BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00017334
         (2527 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]             1154   0.0  
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...  1154   0.0  
ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, put...  1079   0.0  
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put...  1079   0.0  
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr...  1071   0.0  
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun...  1067   0.0  
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...  1059   0.0  
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub...  1046   0.0  
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...  1039   0.0  
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...  1028   0.0  
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1019   0.0  
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no...  1014   0.0  
ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1000   0.0  
gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus...   982   0.0  
gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycope...   981   0.0  
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...   974   0.0  
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub...   971   0.0  
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub...   964   0.0  
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub...   961   0.0  
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag...   939   0.0  

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score = 1154 bits (2986), Expect = 0.0
 Identities = 594/843 (70%), Positives = 678/843 (80%), Gaps = 10/843 (1%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTALQI 182
            G+LNLQ             + YFL+KAA QQL MF S ++P+P LLK   SG  WTALQI
Sbjct: 545  GNLNLQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPCWTALQI 604

Query: 183  LQTALPVLFDSSGGRHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSL 359
            LQTALP  FD  G RH I +S I++VD+N++ L SLVNEIVTSIF EKGP EVLKFF+SL
Sbjct: 605  LQTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLKFFDSL 664

Query: 360  QPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRL 539
            QPLLMENLF+ GFSV LEDFS+P+ V QNIQ++++D+S LLY+LRS YNEL++LQ EN L
Sbjct: 665  QPLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQAENHL 724

Query: 540  RLEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFYSRTLVEDMAV 719
            RL KVPVANFIL  S +GNLIDSKSDSAINKVVQQI FLG QLS+KGKFYSRTLVE MA 
Sbjct: 725  RLTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLVEGMAY 784

Query: 720  LFQTKHP-SGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFK 896
            LF++K+P  G DYPSG++GLI+SCFFHGLDPYEEMVHSIS+RE++VRSSRGL+EPGTLFK
Sbjct: 785  LFKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPGTLFK 844

Query: 897  NLMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPA 1076
            NLMAILRDVVICYDGTVRNVCSNSIIQFEY  K+    Q FFPAGEPVGVLAATAMSNPA
Sbjct: 845  NLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMSNPA 904

Query: 1077 YKAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYCQENAAYLVK 1256
            YKAVLDSSPSSN+SWE+MKEILLC+V F ND I RRVILYLNDC CGR+YC+ENAAYLVK
Sbjct: 905  YKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVK 964

Query: 1257 NQLKKVSLKDAAVEFMIEY-------RSSENDAGLVGHIHLNKELLKKFNITVHEVLDKC 1415
            NQLKK SLKD AVEFMIEY        SSE   GLVGHIHLNK LL+  N+++ EV  KC
Sbjct: 965  NQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSMQEVCQKC 1024

Query: 1416 QENIFSFKKKKNTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETSDVQLEGVS 1595
            +E I SF+KKKN   +FK+                 K  DMPCL+F WQ   D  LE + 
Sbjct: 1025 EETINSFRKKKNVGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGNRDDNLEQIL 1084

Query: 1596 HILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAV 1775
            HILA KICPVLL+TIIKGD R+CTVNIIW SPDTTTW RNP K+RKGELA+DIVLEKAAV
Sbjct: 1085 HILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLEKAAV 1144

Query: 1776 KQKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTK 1955
            KQ+GDAWRIV+D+CLP++HLIDT+RS+PYAI QVQELLG+SCAFDQAVQRL  SVTMV K
Sbjct: 1145 KQRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVTMVAK 1204

Query: 1956 GVLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLFTPRKCFEKAAEKR 2135
            GVLKEHLILL NSMTCAG LIGF  GGYK LSR+L ++VPFT+ATLFTPRKCFEKA+EK 
Sbjct: 1205 GVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKASEKC 1264

Query: 2136 HIDSLSSIVASCSWGKHVSVGTGSRFEVLWDTNKIGSKKEAGIDIYNFLQMV-SVPDKEV 2312
            H DSLSSIVASCSWGKHV+VGTGSRF+VLWDT +IG  ++ GIDIY+FL +V S    + 
Sbjct: 1265 HTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRSGSYGKE 1324

Query: 2313 ADTDCLGADIDYLALEDEIVGEFGMSPEHDSGFGKPVFEDSADFQQGFENQMVPGGDTNG 2492
             DT CLGA+++ L LEDE + E GMSPEH S F KPVFEDSA+FQ  +EN  VPG   +G
Sbjct: 1325 PDTACLGAEVEDLILEDENL-ELGMSPEHSSNFEKPVFEDSAEFQNTWENH-VPG---SG 1379

Query: 2493 SPW 2501
              W
Sbjct: 1380 GDW 1382


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score = 1154 bits (2986), Expect = 0.0
 Identities = 594/843 (70%), Positives = 678/843 (80%), Gaps = 10/843 (1%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTALQI 182
            G+LNLQ             + YFL+KAA QQL MF S ++P+P LLK   SG  WTALQI
Sbjct: 485  GNLNLQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPCWTALQI 544

Query: 183  LQTALPVLFDSSGGRHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSL 359
            LQTALP  FD  G RH I +S I++VD+N++ L SLVNEIVTSIF EKGP EVLKFF+SL
Sbjct: 545  LQTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLKFFDSL 604

Query: 360  QPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRL 539
            QPLLMENLF+ GFSV LEDFS+P+ V QNIQ++++D+S LLY+LRS YNEL++LQ EN L
Sbjct: 605  QPLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQAENHL 664

Query: 540  RLEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFYSRTLVEDMAV 719
            RL KVPVANFIL  S +GNLIDSKSDSAINKVVQQI FLG QLS+KGKFYSRTLVE MA 
Sbjct: 665  RLTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLVEGMAY 724

Query: 720  LFQTKHP-SGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFK 896
            LF++K+P  G DYPSG++GLI+SCFFHGLDPYEEMVHSIS+RE++VRSSRGL+EPGTLFK
Sbjct: 725  LFKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPGTLFK 784

Query: 897  NLMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPA 1076
            NLMAILRDVVICYDGTVRNVCSNSIIQFEY  K+    Q FFPAGEPVGVLAATAMSNPA
Sbjct: 785  NLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMSNPA 844

Query: 1077 YKAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYCQENAAYLVK 1256
            YKAVLDSSPSSN+SWE+MKEILLC+V F ND I RRVILYLNDC CGR+YC+ENAAYLVK
Sbjct: 845  YKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVK 904

Query: 1257 NQLKKVSLKDAAVEFMIEY-------RSSENDAGLVGHIHLNKELLKKFNITVHEVLDKC 1415
            NQLKK SLKD AVEFMIEY        SSE   GLVGHIHLNK LL+  N+++ EV  KC
Sbjct: 905  NQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSMQEVCQKC 964

Query: 1416 QENIFSFKKKKNTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETSDVQLEGVS 1595
            +E I SF+KKKN   +FK+                 K  DMPCL+F WQ   D  LE + 
Sbjct: 965  EETINSFRKKKNVGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGNRDDNLEQIL 1024

Query: 1596 HILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAV 1775
            HILA KICPVLL+TIIKGD R+CTVNIIW SPDTTTW RNP K+RKGELA+DIVLEKAAV
Sbjct: 1025 HILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLEKAAV 1084

Query: 1776 KQKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTK 1955
            KQ+GDAWRIV+D+CLP++HLIDT+RS+PYAI QVQELLG+SCAFDQAVQRL  SVTMV K
Sbjct: 1085 KQRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVTMVAK 1144

Query: 1956 GVLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLFTPRKCFEKAAEKR 2135
            GVLKEHLILL NSMTCAG LIGF  GGYK LSR+L ++VPFT+ATLFTPRKCFEKA+EK 
Sbjct: 1145 GVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKASEKC 1204

Query: 2136 HIDSLSSIVASCSWGKHVSVGTGSRFEVLWDTNKIGSKKEAGIDIYNFLQMV-SVPDKEV 2312
            H DSLSSIVASCSWGKHV+VGTGSRF+VLWDT +IG  ++ GIDIY+FL +V S    + 
Sbjct: 1205 HTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRSGSYGKE 1264

Query: 2313 ADTDCLGADIDYLALEDEIVGEFGMSPEHDSGFGKPVFEDSADFQQGFENQMVPGGDTNG 2492
             DT CLGA+++ L LEDE + E GMSPEH S F KPVFEDSA+FQ  +EN  VPG   +G
Sbjct: 1265 PDTACLGAEVEDLILEDENL-ELGMSPEHSSNFEKPVFEDSAEFQNTWENH-VPG---SG 1319

Query: 2493 SPW 2501
              W
Sbjct: 1320 GDW 1322


>ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
            [Theobroma cacao] gi|508727914|gb|EOY19811.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            3 [Theobroma cacao]
          Length = 1675

 Score = 1079 bits (2791), Expect = 0.0
 Identities = 548/827 (66%), Positives = 650/827 (78%), Gaps = 6/827 (0%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTALQI 182
            G+LNLQ             K     KA  QQL+MF SS +PQP  LKG+S G  WTALQI
Sbjct: 486  GNLNLQLATDSLLSLRVMLKTLLFKKADAQQLSMFLSSALPQPAFLKGNSFGPCWTALQI 545

Query: 183  LQTALPVLFDSSGGRHRIVRSEIMEVDFNKEL-PSLVNEIVTSIFFEKGPEEVLKFFNSL 359
            LQTA P   D SG R+ I +S+I+ VDF+++L  S++NE+VTSIFFEKGP+EVL FF+SL
Sbjct: 546  LQTAFPACLDCSGDRYLISKSDILTVDFSRDLMQSVINEVVTSIFFEKGPKEVLNFFDSL 605

Query: 360  QPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRL 539
            QPLLMEN+FA GFSV LEDFS+   VIQNIQ+ +QD+SPLLY LRS+YNELV LQ+EN +
Sbjct: 606  QPLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLLYQLRSTYNELVGLQMENHI 665

Query: 540  RLEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFYSRTLVEDMAV 719
            R+ K PVANFIL  S +G+LIDSKSDS +NKVVQQI FLGLQLS+KGKFYS+TLVED+A 
Sbjct: 666  RVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKTLVEDVAY 725

Query: 720  LFQTKHPS-GVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFK 896
             FQ+ +PS GVDYPS ++GLIKSCFFHGLDPYE MVHSIS+REV+VRSSRGL+EPGTLFK
Sbjct: 726  QFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLSEPGTLFK 785

Query: 897  NLMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPA 1076
            NLMAILRDVVICYDGTVRN+ SNSIIQF+Y   +    Q  FPAGEPVGVLAATAMSNPA
Sbjct: 786  NLMAILRDVVICYDGTVRNISSNSIIQFQYGLNARTKPQ--FPAGEPVGVLAATAMSNPA 843

Query: 1077 YKAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYCQENAAYLVK 1256
            YKAVLDS+PSSN+SWE+MKEILLCKV   ND + RRVILYL DC CGR+YCQENAAYLVK
Sbjct: 844  YKAVLDSTPSSNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYCQENAAYLVK 903

Query: 1257 NQLKKVSLKDAAVEFMIEYRS----SENDAGLVGHIHLNKELLKKFNITVHEVLDKCQEN 1424
            N L+KV LKD AVE + EY+     SE++AGLVGHI LNK +LK+ NI++ EV  KCQE 
Sbjct: 904  NHLRKVKLKDTAVELIFEYKQQQTVSESEAGLVGHILLNKAVLKELNISMQEVHMKCQET 963

Query: 1425 IFSFKKKKNTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETSDVQLEGVSHIL 1604
            I SF+KKK TA  FKR                 KW DM CLMF  + T D  L+     L
Sbjct: 964  IISFRKKKKTADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCRNTKDDHLDCTLQDL 1023

Query: 1605 AAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVKQK 1784
               I PVLLET+IKGDPRIC+ NIIW SPDTTTW R+PSKT+KGELA+D+VLEK+AVKQ 
Sbjct: 1024 VDIIYPVLLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELALDVVLEKSAVKQN 1083

Query: 1785 GDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKGVL 1964
            GDAWR V+D CLP+I+LIDT+RS+PYAI QVQELLG+SCAF+QAVQRL  SV+MV +GVL
Sbjct: 1084 GDAWRTVIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQRLSTSVSMVARGVL 1143

Query: 1965 KEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLFTPRKCFEKAAEKRHID 2144
            KEHLILL NSMTCAG LIGF  GGYK LSRSL ++VPF++ATLFTPRKCFE+AAEK H+D
Sbjct: 1144 KEHLILLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPRKCFERAAEKCHVD 1203

Query: 2145 SLSSIVASCSWGKHVSVGTGSRFEVLWDTNKIGSKKEAGIDIYNFLQMVSVPDKEVADTD 2324
            SLSSIVASCSWGKHV+VGTGSRF+VLWD  ++G  +++GID+YNFL M+S      + T 
Sbjct: 1204 SLSSIVASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFLHMLSSASGPSSTTT 1263

Query: 2325 CLGADIDYLALEDEIVGEFGMSPEHDSGFGKPVFEDSADFQQGFENQ 2465
            CLG ++D L ++ + + E+ +SPEH +G  KPVFED+ADF+   + Q
Sbjct: 1264 CLGEEVDDL-MDVDNMAEWSLSPEHSNGLDKPVFEDAADFENDLDFQ 1309


>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
            [Theobroma cacao] gi|590569189|ref|XP_007011000.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao]
          Length = 1788

 Score = 1079 bits (2791), Expect = 0.0
 Identities = 548/827 (66%), Positives = 650/827 (78%), Gaps = 6/827 (0%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTALQI 182
            G+LNLQ             K     KA  QQL+MF SS +PQP  LKG+S G  WTALQI
Sbjct: 486  GNLNLQLATDSLLSLRVMLKTLLFKKADAQQLSMFLSSALPQPAFLKGNSFGPCWTALQI 545

Query: 183  LQTALPVLFDSSGGRHRIVRSEIMEVDFNKEL-PSLVNEIVTSIFFEKGPEEVLKFFNSL 359
            LQTA P   D SG R+ I +S+I+ VDF+++L  S++NE+VTSIFFEKGP+EVL FF+SL
Sbjct: 546  LQTAFPACLDCSGDRYLISKSDILTVDFSRDLMQSVINEVVTSIFFEKGPKEVLNFFDSL 605

Query: 360  QPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRL 539
            QPLLMEN+FA GFSV LEDFS+   VIQNIQ+ +QD+SPLLY LRS+YNELV LQ+EN +
Sbjct: 606  QPLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLLYQLRSTYNELVGLQMENHI 665

Query: 540  RLEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFYSRTLVEDMAV 719
            R+ K PVANFIL  S +G+LIDSKSDS +NKVVQQI FLGLQLS+KGKFYS+TLVED+A 
Sbjct: 666  RVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKTLVEDVAY 725

Query: 720  LFQTKHPS-GVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFK 896
             FQ+ +PS GVDYPS ++GLIKSCFFHGLDPYE MVHSIS+REV+VRSSRGL+EPGTLFK
Sbjct: 726  QFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLSEPGTLFK 785

Query: 897  NLMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPA 1076
            NLMAILRDVVICYDGTVRN+ SNSIIQF+Y   +    Q  FPAGEPVGVLAATAMSNPA
Sbjct: 786  NLMAILRDVVICYDGTVRNISSNSIIQFQYGLNARTKPQ--FPAGEPVGVLAATAMSNPA 843

Query: 1077 YKAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYCQENAAYLVK 1256
            YKAVLDS+PSSN+SWE+MKEILLCKV   ND + RRVILYL DC CGR+YCQENAAYLVK
Sbjct: 844  YKAVLDSTPSSNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYCQENAAYLVK 903

Query: 1257 NQLKKVSLKDAAVEFMIEYRS----SENDAGLVGHIHLNKELLKKFNITVHEVLDKCQEN 1424
            N L+KV LKD AVE + EY+     SE++AGLVGHI LNK +LK+ NI++ EV  KCQE 
Sbjct: 904  NHLRKVKLKDTAVELIFEYKQQQTVSESEAGLVGHILLNKAVLKELNISMQEVHMKCQET 963

Query: 1425 IFSFKKKKNTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETSDVQLEGVSHIL 1604
            I SF+KKK TA  FKR                 KW DM CLMF  + T D  L+     L
Sbjct: 964  IISFRKKKKTADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCRNTKDDHLDCTLQDL 1023

Query: 1605 AAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVKQK 1784
               I PVLLET+IKGDPRIC+ NIIW SPDTTTW R+PSKT+KGELA+D+VLEK+AVKQ 
Sbjct: 1024 VDIIYPVLLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELALDVVLEKSAVKQN 1083

Query: 1785 GDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKGVL 1964
            GDAWR V+D CLP+I+LIDT+RS+PYAI QVQELLG+SCAF+QAVQRL  SV+MV +GVL
Sbjct: 1084 GDAWRTVIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQRLSTSVSMVARGVL 1143

Query: 1965 KEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLFTPRKCFEKAAEKRHID 2144
            KEHLILL NSMTCAG LIGF  GGYK LSRSL ++VPF++ATLFTPRKCFE+AAEK H+D
Sbjct: 1144 KEHLILLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPRKCFERAAEKCHVD 1203

Query: 2145 SLSSIVASCSWGKHVSVGTGSRFEVLWDTNKIGSKKEAGIDIYNFLQMVSVPDKEVADTD 2324
            SLSSIVASCSWGKHV+VGTGSRF+VLWD  ++G  +++GID+YNFL M+S      + T 
Sbjct: 1204 SLSSIVASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFLHMLSSASGPSSTTT 1263

Query: 2325 CLGADIDYLALEDEIVGEFGMSPEHDSGFGKPVFEDSADFQQGFENQ 2465
            CLG ++D L ++ + + E+ +SPEH +G  KPVFED+ADF+   + Q
Sbjct: 1264 CLGEEVDDL-MDVDNMAEWSLSPEHSNGLDKPVFEDAADFENDLDFQ 1309


>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
            gi|557522591|gb|ESR33958.1| hypothetical protein
            CICLE_v10004129mg [Citrus clementina]
          Length = 1867

 Score = 1071 bits (2770), Expect = 0.0
 Identities = 552/829 (66%), Positives = 647/829 (78%), Gaps = 8/829 (0%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTALQI 182
            G+LNLQ             K YFLDKA  QQLAMFA S +P+P L K H SG  WTALQI
Sbjct: 487  GNLNLQLATDALLSLKVMFKKYFLDKAFAQQLAMFALSPLPRPALSKAHCSGPRWTALQI 546

Query: 183  LQTALPVLFDSSGGRHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSL 359
            LQ+ LP  FDS G R+ I +SE++  DF+++ +PS++NEIVTSIFFEKGPEEVL+FF+SL
Sbjct: 547  LQSVLPPGFDSCGDRYLIKKSEVLNGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSL 606

Query: 360  QPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRL 539
            QPLLMENLFA GFSV LEDFSL  + + NIQ+ +Q +  LLYH  S+ NELV+LQ+EN +
Sbjct: 607  QPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHI 666

Query: 540  RLEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFYSRTLVEDMAV 719
            R  K+ VA FILK ST+G LIDSKSDSA++KVVQQ  FLGLQLSD+GKFYS+TLVED+A 
Sbjct: 667  RHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIAS 726

Query: 720  LFQTKHPSGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKN 899
             F+  +P  ++YP+ KYGLIK CFFHGLDPYEEM HSIS+REV+VRSSRGL+EPGTLFKN
Sbjct: 727  HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 786

Query: 900  LMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAY 1079
            LMA+LRDVVICYDGTVRNVCSNSIIQF+YA  +   S S FPAGEPVGVLAATAMSNPAY
Sbjct: 787  LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNAR-KSHSLFPAGEPVGVLAATAMSNPAY 845

Query: 1080 KAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYCQENAAYLVKN 1259
            KAVLDSSPSSNNSWE+MKEILLC+V F+NDPI RRVILYLNDC CGR+YCQE AAY+VKN
Sbjct: 846  KAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKN 905

Query: 1260 QLKKVSLKDAAVEFMIEYRSSE---NDAGLVGHIHLNKELLKKFNITVHEVLDKCQENIF 1430
            QLK+VSLKDAAVEF+IEY+  E   +D GLVGHIHLNK LL+   I++H++L KCQE + 
Sbjct: 906  QLKRVSLKDAAVEFLIEYKKPEIISDDEGLVGHIHLNKILLEDLRISMHDILPKCQETLK 965

Query: 1431 SF---KKKKNTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETSDVQLEGVSHI 1601
            SF   KK K   Q+FK                  K  +MPCLMF  +  SD  L+ +S +
Sbjct: 966  SFCKKKKMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGV 1025

Query: 1602 LAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVKQ 1781
            LA  I PVLLETIIKGDPRIC+ NIIW SPDTT W RNPSK RKGELA+D+VLEK+ VKQ
Sbjct: 1026 LANMIYPVLLETIIKGDPRICSANIIWISPDTTAWIRNPSKNRKGELALDVVLEKSVVKQ 1085

Query: 1782 KGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKGV 1961
             GDAWR V+DSCLP+ HLIDT+RSVPYAI QVQELLGVSCAF+QAVQRL ASVTMV KGV
Sbjct: 1086 SGDAWRTVLDSCLPVFHLIDTRRSVPYAIKQVQELLGVSCAFEQAVQRLSASVTMVAKGV 1145

Query: 1962 LKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLFTPRKCFEKAAEKRHI 2141
            LKEHLILL NSMTCAG L+GF  GGYK LSRSL V+VPFT+ATLF PRKCFEKAAEKRH 
Sbjct: 1146 LKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHT 1205

Query: 2142 DSLSSIVASCSWGKHVSVGTGSRFEVLWDTNKIGSKKEAGIDIYNFLQMV-SVPDKEVAD 2318
            D+LSS+VA+CSWGKHV+VGTGSRF++LW T      ++ G+D+Y+FL MV S    E  D
Sbjct: 1206 DNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVRSSTGIEELD 1265

Query: 2319 TDCLGADIDYLALEDEIVGEFGMSPEHDSGFGKPVFEDSADFQQGFENQ 2465
            T CLG ++D   LEDE   ++ +SPEH+    KP+FED  + Q   EN+
Sbjct: 1266 TGCLGEEVD--GLEDEF--DWSLSPEHNLCSDKPIFEDLVEDQSWLENK 1310


>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
            gi|462415343|gb|EMJ20080.1| hypothetical protein
            PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score = 1067 bits (2760), Expect = 0.0
 Identities = 539/828 (65%), Positives = 646/828 (78%), Gaps = 14/828 (1%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTALQI 182
            G  NLQ             K YFLDKAA QQLAMFASS++P+P LLK +S+   WTA QI
Sbjct: 488  GKPNLQLAADALLSLKMMFKKYFLDKAAAQQLAMFASSSLPRPALLKANSAHSYWTAFQI 547

Query: 183  LQTALPVLFDSSGGRHRIVRSEIMEVDFN-KELPSLVNEIVTSIFFEKGPEEVLKFFNSL 359
            LQTALP  FD SG  + + +SEI+ +DF+   + +++N+I TS+FFEKG E+VLKFF+SL
Sbjct: 548  LQTALPAHFDCSGDNYLVNKSEILNIDFSTSSVAAVMNDIATSVFFEKGGEDVLKFFDSL 607

Query: 360  QPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRL 539
            QPLLMENLF+ GFSVGLEDF +  + IQ+IQ+++QD S LLYHLRS+YNE VE QL+NR+
Sbjct: 608  QPLLMENLFSEGFSVGLEDFYMSRTSIQDIQKNIQDSSDLLYHLRSTYNEFVEFQLQNRI 667

Query: 540  RLEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFYSRTLVEDMAV 719
            R  KVPV++FIL+ S +G+LIDSKSDSAINK+VQQI FLGLQLSDKG+FYS+TLVED+A 
Sbjct: 668  RSVKVPVSHFILESSALGDLIDSKSDSAINKIVQQIGFLGLQLSDKGRFYSKTLVEDVAS 727

Query: 720  LFQTKHPSGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKN 899
            L  +K+PS +DYPS +YGL++SCFFHGLDPYE +VHSI++REV+VRSSRGL+EPGTLFKN
Sbjct: 728  LCHSKYPSDIDYPSAEYGLVQSCFFHGLDPYEAIVHSIATREVIVRSSRGLSEPGTLFKN 787

Query: 900  LMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAY 1079
            LMAILRDVVICYDGTVRNVCSNSIIQFEY    G   Q  FPAGEPVGVLAATAMSNPAY
Sbjct: 788  LMAILRDVVICYDGTVRNVCSNSIIQFEYGVNIGSRPQHLFPAGEPVGVLAATAMSNPAY 847

Query: 1080 KAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYCQENAAYLVKN 1259
            KAVLDS+PSSN+SWE+MKEILLCKV F N+ I RRVILYLN+C CGR+YC+E AA LVKN
Sbjct: 848  KAVLDSTPSSNSSWELMKEILLCKVNFKNELIDRRVILYLNNCGCGRKYCRERAACLVKN 907

Query: 1260 QLKKVSLKDAAVEFMIEYR-------SSENDAGLVGHIHLNKELLKKFNITVHEVLDKCQ 1418
            QLKKVSLKD AVEFMIEY        S  NDAGLVGHIHLN+++L++ NI VH++L KCQ
Sbjct: 908  QLKKVSLKDTAVEFMIEYNNQLSGLGSLINDAGLVGHIHLNEDMLRELNIGVHDILQKCQ 967

Query: 1419 ENIFSFKKKK------NTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETSDVQ 1580
            E I SF++KK      N   +FK                  K  D PCLMF  Q T D++
Sbjct: 968  ETINSFRRKKVGKKKFNIGYHFKNTVLFASEHCSFHHSCAEKRSDSPCLMFFLQATDDLE 1027

Query: 1581 LEGVSHILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVL 1760
                    A  ICPVLLETIIKGDPRI + NIIW  PDTTTW R+P+K++KGE A+DIVL
Sbjct: 1028 TTTTLQYYADLICPVLLETIIKGDPRIGSANIIWIDPDTTTWIRSPNKSQKGEWALDIVL 1087

Query: 1761 EKAAVKQKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASV 1940
            EK+ +KQ GDAWR V+DSCLP++HLIDT+RS+PYAI Q+QELLGVSCAFDQAVQRL  +V
Sbjct: 1088 EKSVIKQSGDAWRTVLDSCLPVLHLIDTRRSIPYAIKQIQELLGVSCAFDQAVQRLSTAV 1147

Query: 1941 TMVTKGVLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLFTPRKCFEK 2120
            TMV KGVLKEHLILL NSMTCAG  +GF   GYK LSR+L ++VPFT+ATLFTPRKCFE+
Sbjct: 1148 TMVAKGVLKEHLILLANSMTCAGNFVGFNSSGYKALSRALNIQVPFTEATLFTPRKCFER 1207

Query: 2121 AAEKRHIDSLSSIVASCSWGKHVSVGTGSRFEVLWDTNKIGSKKEAGIDIYNFLQMVSVP 2300
            AAEK H+DSL+SIVASCSWGKHV+VGTG RF+VLWDT ++   +E G+D++NFL MVS  
Sbjct: 1208 AAEKCHMDSLASIVASCSWGKHVAVGTGVRFDVLWDTREVELTQEGGLDVFNFLHMVSTA 1267

Query: 2301 DKEVADTDCLGADIDYLALEDEIVGEFGMSPEHDSGFGKPVFEDSADF 2444
            + E A T  LGA++D L L DE + +   SPE +S F +PVFED  +F
Sbjct: 1268 NVEEATTGALGAEVDDLMLVDE-MADSSFSPELNSSFDRPVFEDLVEF 1314


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score = 1059 bits (2738), Expect = 0.0
 Identities = 550/829 (66%), Positives = 646/829 (77%), Gaps = 8/829 (0%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTALQI 182
            G+LNLQ             K YFLDKA  QQLAMFA S +P+P L K   S   WTALQI
Sbjct: 487  GNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSAR-WTALQI 545

Query: 183  LQTALPVLFDSSGGRHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSL 359
            LQ+ LP  FDS G R+ I +SE+++ DF+++ +PS++NEIVTSIFFEKGPEEVL+FF+SL
Sbjct: 546  LQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSL 605

Query: 360  QPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRL 539
            QPLLMENLFA GFSV LEDFSL  + + NIQ+ +Q +  LLYH  S+ NELV+LQ+EN +
Sbjct: 606  QPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHI 665

Query: 540  RLEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFYSRTLVEDMAV 719
            R  K+ VA FILK ST+G LIDSKSDSA++KVVQQ  FLGLQLSD+GKFYS+TLVED+A 
Sbjct: 666  RHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIAS 725

Query: 720  LFQTKHPSGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKN 899
             F+  +P  ++YP+ KYGLIK CFFHGLDPYEEM HSIS+REV+VRSSRGL+EPGTLFKN
Sbjct: 726  HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 785

Query: 900  LMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAY 1079
            LMA+LRDVVICYDGTVRNVCSNSIIQF+YA  +   S S FPAGEPVGVLAATAMSNPAY
Sbjct: 786  LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNAR-KSHSLFPAGEPVGVLAATAMSNPAY 844

Query: 1080 KAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYCQENAAYLVKN 1259
            KAVLDSSPSSNNSWE+MKEILLC+V F+NDPI RRVILYLNDC CGR+YCQE AAY+VKN
Sbjct: 845  KAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKN 904

Query: 1260 QLKKVSLKDAAVEFMIEYRSSE---NDAGLVGHIHLNKELLKKFNITVHEVLDKCQENIF 1430
            QLK+VSLKDAAVEF+IEY+  E   +D GLVGHIHLNK LL+   I++H++L KCQE + 
Sbjct: 905  QLKRVSLKDAAVEFLIEYKKPEIISDDEGLVGHIHLNKILLEDLRISMHDILPKCQETLK 964

Query: 1431 SF---KKKKNTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETSDVQLEGVSHI 1601
            SF   KK K   Q+FK                  K  +MPCLMF  +  SD  L+ +S +
Sbjct: 965  SFCKKKKMKKVVQFFKNTSLSVSECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGV 1024

Query: 1602 LAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVKQ 1781
            LA  I PVLLETIIKGDPRI + NIIW SPDTT W RNPSK RKGELA+D+VLEK+ VKQ
Sbjct: 1025 LANMIYPVLLETIIKGDPRIYSANIIWISPDTTAWIRNPSKNRKGELALDVVLEKSVVKQ 1084

Query: 1782 KGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKGV 1961
             GDAWR V+DSCLP+ HLIDT+RSVPYAI QVQELLGVSCAF+QAVQRL ASVTMV KGV
Sbjct: 1085 SGDAWRTVLDSCLPVFHLIDTRRSVPYAIKQVQELLGVSCAFEQAVQRLSASVTMVAKGV 1144

Query: 1962 LKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLFTPRKCFEKAAEKRHI 2141
            LKEHLILL NSMTCAG L+GF  GGYK LSRSL V+VPFT+ATLFTPRKCFEKAAEK H 
Sbjct: 1145 LKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFTPRKCFEKAAEKCHT 1204

Query: 2142 DSLSSIVASCSWGKHVSVGTGSRFEVLWDTNKIGSKKEAGIDIYNFLQMV-SVPDKEVAD 2318
            D+LSS+VA+CSWGKHV+VGTGSRF++LW T      ++ G+D+Y+FL MV S    E +D
Sbjct: 1205 DNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVRSSTGIEESD 1264

Query: 2319 TDCLGADIDYLALEDEIVGEFGMSPEHDSGFGKPVFEDSADFQQGFENQ 2465
            T CLG ++D   LEDE   ++ +SPEH+    KPVFED  + Q   EN+
Sbjct: 1265 TGCLGEEVD--GLEDEF--DWSLSPEHNLCSDKPVFEDLVEDQSWLENK 1309


>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1991

 Score = 1046 bits (2706), Expect = 0.0
 Identities = 533/848 (62%), Positives = 654/848 (77%), Gaps = 13/848 (1%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTALQI 182
            G  NLQ             K YF +KAA+QQLAMF SS++PQP LLK +S+   WTALQI
Sbjct: 484  GKPNLQLATDSLLSLKLMFKKYFFNKAAMQQLAMFVSSSLPQPALLKANSTVPCWTALQI 543

Query: 183  LQTALPVLFDSSGGRHRIVRSEIMEVDFNKEL-PSLVNEIVTSIFFEKGPEEVLKFFNSL 359
            LQTALP  F SSG RH +  SE++ +D +  L PSL+N+I TSIFFEK  E+VL FFNS+
Sbjct: 544  LQTALPAQFQSSGDRHLVKDSEVLLLDCSTSLVPSLINDIGTSIFFEKSAEDVLSFFNSM 603

Query: 360  QPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRL 539
            QPLLMENLF+ GFSVGLEDF+LP + IQ+IQ+ L+++SPLL+H+R+ YNELVE+QLEN +
Sbjct: 604  QPLLMENLFSEGFSVGLEDFALPRASIQDIQKGLKEISPLLFHMRTVYNELVEMQLENHI 663

Query: 540  RLEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFYSRTLVEDMAV 719
            R  K PV+NFIL  S +G+LIDSKSDSA+NKVVQQ+ FLG QL D+GK YS+TLVED++ 
Sbjct: 664  RKVKEPVSNFILNSSALGDLIDSKSDSAMNKVVQQVGFLGRQLYDQGKLYSKTLVEDVSS 723

Query: 720  LFQTKHPSG-VDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFK 896
            L+Q K+PS  VDYPS ++GL+   F HGLDP E M+HSI++REV+VRSSRGL+EPGTLFK
Sbjct: 724  LYQNKYPSDIVDYPSAEFGLVHRGFVHGLDPVEGMIHSIATREVIVRSSRGLSEPGTLFK 783

Query: 897  NLMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPA 1076
            NLMA LRDVVICYDGTVRNVCSNSIIQFEY  KSG   ++ FPAGEPVGVLAATAMSNPA
Sbjct: 784  NLMATLRDVVICYDGTVRNVCSNSIIQFEYGVKSGSGPENLFPAGEPVGVLAATAMSNPA 843

Query: 1077 YKAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYCQENAAYLVK 1256
            YKAVLDS+PSSN+SW++MKEILLCKV F N+ I RRV+LYLNDC CGR+YC+E+AAYLVK
Sbjct: 844  YKAVLDSTPSSNSSWDLMKEILLCKVNFKNELIDRRVVLYLNDCGCGRKYCREHAAYLVK 903

Query: 1257 NQLKKVSLKDAAVEFMIEYR------SSENDAGLVGHIHLNKELLKKFNITVHEVLDKCQ 1418
            N+LKKVSLKD AVEFMIEY+      S E D+GLVGH+HLN+ LL++ N+ + E+L KC+
Sbjct: 904  NRLKKVSLKDTAVEFMIEYQKERAAGSMEIDSGLVGHVHLNEMLLRELNLGMSEILQKCE 963

Query: 1419 ENIFSFKKKK-----NTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETSDVQL 1583
            E I SF++KK     N  + FKR                      PCLMF +Q+ ++ +L
Sbjct: 964  ETINSFRRKKVGKKMNIGEIFKRTILSYSECCSFHQSSADNRSGSPCLMFFYQDFNNSEL 1023

Query: 1584 EGVSHILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLE 1763
            E +S +LA  ICPVLL+T+IKGDPRI + NIIW + ++TTW R+P+K+ KGELA+D+VLE
Sbjct: 1024 EAISQMLADFICPVLLKTVIKGDPRISSANIIWINSESTTWIRSPNKSLKGELALDVVLE 1083

Query: 1764 KAAVKQKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVT 1943
            K+ VKQ GDAWRI +D CLP++HLIDT+RS+PYAI QVQELLGVSCAFDQAVQRL  +V 
Sbjct: 1084 KSVVKQSGDAWRIALDCCLPVLHLIDTRRSIPYAIKQVQELLGVSCAFDQAVQRLAKAVA 1143

Query: 1944 MVTKGVLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLFTPRKCFEKA 2123
            MV KGVLKEHLILL NSMTCAG  +GF  GGYK LSR+L ++VPFT+ATLFTP+KCFE+A
Sbjct: 1144 MVAKGVLKEHLILLANSMTCAGNFVGFNPGGYKALSRALNIQVPFTEATLFTPKKCFERA 1203

Query: 2124 AEKRHIDSLSSIVASCSWGKHVSVGTGSRFEVLWDTNKIGSKKEAGIDIYNFLQMVSVPD 2303
            AEK H+DSLSSIVASCSWGKHV+VGTGSRFE+LWDT + G  +  G+D++NFL MV+  +
Sbjct: 1204 AEKCHMDSLSSIVASCSWGKHVAVGTGSRFEILWDTKEGGLNEVGGVDVFNFLHMVNAAN 1263

Query: 2304 KEVADTDCLGADIDYLALEDEIVGEFGMSPEHDSGFGKPVFEDSADFQQGFENQMVPGGD 2483
             E   T  LG +ID L + D   G+  +SPEH+S   KPVFED  +F   FEN  VPG  
Sbjct: 1264 GEELTTAALGTEIDDL-VPDYENGDVSLSPEHNSSSDKPVFEDIVEFPDNFEN--VPG-- 1318

Query: 2484 TNGSPWDN 2507
               S WD+
Sbjct: 1319 --KSSWDS 1324


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score = 1039 bits (2687), Expect = 0.0
 Identities = 528/827 (63%), Positives = 642/827 (77%), Gaps = 7/827 (0%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTALQI 182
            G+LNLQ             + YFL KAA QQLAMF SS +P P LL   S    WTALQI
Sbjct: 485  GNLNLQLANDSLLSLKMMFRKYFLGKAAAQQLAMFVSSYLPPPALLGVRSGSLHWTALQI 544

Query: 183  LQTALPVLFDSSGGRHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSL 359
            LQT LP  FD  G  + I  S  ++ DF+++ +PSL+NEI+TSIFF+KGPEEVLKFF+SL
Sbjct: 545  LQTVLPASFDCHGDSYLIKNSNFLKFDFDRDAMPSLINEILTSIFFQKGPEEVLKFFDSL 604

Query: 360  QPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRL 539
            QPLLME++F+ GFSVGL+D+S+P + +Q +Q+++Q +SPLLY LRS++NELVELQLEN L
Sbjct: 605  QPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQLENHL 664

Query: 540  RLEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFYSRTLVEDMAV 719
            R  KVP  NFILKLS++G L DSKS+SAINKVVQQI FLGLQLSDKG+FYS++L+ED+A 
Sbjct: 665  RSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVAS 724

Query: 720  LFQTKHPSG-VDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFK 896
            LF  ++ S  +DYPS ++GL+K CFFHGLDPYEEMVHSIS+REVMVRSSRGLTEPGTLFK
Sbjct: 725  LFHNRYSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPGTLFK 784

Query: 897  NLMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGI-DSQSFFPAGEPVGVLAATAMSNP 1073
            NLMAILRDVVICYDGTVRNVCSNSIIQ EY  K+G+    S FP GEPVGVLAATAMS P
Sbjct: 785  NLMAILRDVVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPGEPVGVLAATAMSTP 844

Query: 1074 AYKAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYCQENAAYLV 1253
            AYKAVLDS+PSSN+SW+MMKEILLCKV F N+PI RRVILYLN+C+CGR+YC ENAAY+V
Sbjct: 845  AYKAVLDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKYCNENAAYVV 904

Query: 1254 KNQLKKVSLKDAAVEFMIEYRSSENDAGL----VGHIHLNKELLKKFNITVHEVLDKCQE 1421
            K+ LKKV+LKDAA++FMIEY      +GL    VGH+HLN+ LLK+ NI + EVL +CQE
Sbjct: 905  KSHLKKVTLKDAAMDFMIEYNRQPTPSGLGPGLVGHVHLNRMLLKELNIDMTEVLRRCQE 964

Query: 1422 NIFSFKKKKNTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETSDVQLEGVSHI 1601
             + SFKKKK    +  R                    DMPCL+F W +T DV LE  +HI
Sbjct: 965  TMSSFKKKKKKIAHALRFSISEHCAFHQWNGEES--IDMPCLIF-WHQTRDVHLERTAHI 1021

Query: 1602 LAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVKQ 1781
            LA  + P+L ETIIKGDPRI + ++IW SPD+T+W +NPS+ + GELA+D+ LEK+AVKQ
Sbjct: 1022 LADIVFPLLSETIIKGDPRIKSASVIWISPDSTSWQKNPSRWQDGELALDVCLEKSAVKQ 1081

Query: 1782 KGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKGV 1961
             GDAWR V+D CLP++HLIDT+RSVPYAI QVQELLG+SCAFDQ +QRL  SV+MV+KGV
Sbjct: 1082 NGDAWRNVLDCCLPVLHLIDTRRSVPYAIKQVQELLGISCAFDQMIQRLSKSVSMVSKGV 1141

Query: 1962 LKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLFTPRKCFEKAAEKRHI 2141
            L +HLILL NSMTC G +IGF  GGYK LSR+L ++VPFT+ATLFTPRKCFEKAAEK H 
Sbjct: 1142 LGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATLFTPRKCFEKAAEKCHK 1201

Query: 2142 DSLSSIVASCSWGKHVSVGTGSRFEVLWDTNKIGSKKEAGIDIYNFLQMVSVPDKEVADT 2321
            DSLSSIVASCSWGKHV+VGTGSRF++LWD  ++G K++  +D+YNFL MV     E   +
Sbjct: 1202 DSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVVDVYNFLHMVRSGKSEEPTS 1261

Query: 2322 DCLGADIDYLALEDEIVGEFGMSPEHDSGFGKPVFEDSADFQQGFEN 2462
             CLG +I+ + +EDE  GE  +SPE  S   KPVFEDSA+F+   +N
Sbjct: 1262 ACLGEEIEDIMVEDE-YGELTLSPEPFSTSEKPVFEDSAEFEHCLDN 1307


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score = 1028 bits (2658), Expect = 0.0
 Identities = 538/830 (64%), Positives = 630/830 (75%), Gaps = 9/830 (1%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTALQI 182
            G+LNLQ             K  FL K+A QQLAMF S  +PQP LLK +     WTA QI
Sbjct: 491  GNLNLQLTTDSLLSLKMMFKACFLGKSAAQQLAMFISPYLPQPALLKVNCFFPHWTAHQI 550

Query: 183  LQTALPVLFDSSGGRHRIVRSEIMEVDFNKEL-PSLVNEIVTSIFFEKGPEEVLKFFNSL 359
            LQ ALP  F+ SG R  I+ S  ++VDFN+++  S++NEI+ S+FFEKG   VLKFFNSL
Sbjct: 551  LQMALPACFNCSGERFLIINSNFLKVDFNRDVVASVINEILISMFFEKGSGAVLKFFNSL 610

Query: 360  QPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRL 539
            QP+LMENLF+ GFSV LEDFS+  +V Q I E  + +SPLL +LRS++NELVELQ+EN +
Sbjct: 611  QPMLMENLFSEGFSVSLEDFSISRAVKQRIPESFKAISPLLCNLRSTFNELVELQVENHI 670

Query: 540  RLEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFYSRTLVEDMAV 719
            R  K PV  FIL  S +G LIDSKSD+A+ KVVQQI FLGLQ+SD+GK YS+TLVED+A 
Sbjct: 671  RDVKQPVREFILTSSALGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKLYSKTLVEDLAS 730

Query: 720  LFQTKHPSGV-DYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFK 896
             F +K+P+ + DYPS +YGLI++ FFHGLD YEEM HSIS+REV+VRSSRGL+EPGTLFK
Sbjct: 731  HFLSKYPANLFDYPSAQYGLIQNSFFHGLDAYEEMAHSISTREVIVRSSRGLSEPGTLFK 790

Query: 897  NLMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPA 1076
            NLMAILRDVVICYDGTVRNV SNSIIQFEY  K G +SQS FPAGEPVGVLAATAMSNPA
Sbjct: 791  NLMAILRDVVICYDGTVRNVSSNSIIQFEYGVKVGTESQSLFPAGEPVGVLAATAMSNPA 850

Query: 1077 YKAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYCQENAAYLVK 1256
            YKAVLDS+PSSN SW+MMKEILLCKV F ND   RRVILYLNDC CGR YCQE AAYLVK
Sbjct: 851  YKAVLDSTPSSNCSWDMMKEILLCKVGFKNDLADRRVILYLNDCGCGRNYCQERAAYLVK 910

Query: 1257 NQLKKVSLKDAAVEFMIEYRSSE------NDAGLVGHIHLNKELLKKFNITVHEVLDKCQ 1418
            N L+KVSLKD A  FMIEY+S +      +DAGLVGH+HL+K  L+  NIT   +L+KCQ
Sbjct: 911  NHLEKVSLKDIAKCFMIEYKSQQIPESFGSDAGLVGHVHLDKRKLQDLNITAQVILEKCQ 970

Query: 1419 ENIFSFKKKKNTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETSDVQLEGVSH 1598
            E + +F+KKK     FK+                    + PCLMF WQ   DV LE  S+
Sbjct: 971  ETVNTFRKKKKVGNLFKKTILLVSESCSFQQCID----ESPCLMFFWQGADDVHLERTSN 1026

Query: 1599 ILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVK 1778
            ILA  ICPVLLETIIKGD RI   NIIW +P+T TW RNPS+T+KGELA+DIVLEK+ VK
Sbjct: 1027 ILADMICPVLLETIIKGDHRISCANIIWATPETNTWIRNPSRTQKGELALDIVLEKSVVK 1086

Query: 1779 QKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKG 1958
            + GDAWRIV+DSCLP++HLI+T RS+PYAI QVQELLGVSCAFD AVQRL  SVTMV KG
Sbjct: 1087 KSGDAWRIVLDSCLPVLHLINTTRSIPYAIKQVQELLGVSCAFDTAVQRLSKSVTMVAKG 1146

Query: 1959 VLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLFTPRKCFEKAAEKRH 2138
            VLKEHLILLGNSMTCAG+LIGF  GGYK LSRSL ++VPFT+ATLFTPRKCFEKAAEK H
Sbjct: 1147 VLKEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTPRKCFEKAAEKCH 1206

Query: 2139 IDSLSSIVASCSWGKHVSVGTGSRFEVLWDTNKIGSKKEAGIDIYNFLQMV-SVPDKEVA 2315
             DSLSSIVASC+WGKHV+VGTGS F+VLWDT +     E  +D+Y+FL MV S    E +
Sbjct: 1207 TDSLSSIVASCAWGKHVTVGTGSHFDVLWDTKEACLNPEGSMDVYSFLNMVRSTAGGEES 1266

Query: 2316 DTDCLGADIDYLALEDEIVGEFGMSPEHDSGFGKPVFEDSADFQQGFENQ 2465
             T CLGA++D L LEDE   ++ +SPEH+S   KP FEDSA+FQ    NQ
Sbjct: 1267 VTACLGAEVDDLMLEDE---DWNLSPEHNSSSDKPTFEDSAEFQDFLGNQ 1313


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score = 1019 bits (2635), Expect = 0.0
 Identities = 528/857 (61%), Positives = 642/857 (74%), Gaps = 37/857 (4%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTALQI 182
            G+LNLQ             + YFL KAA QQLAMF SS +P P LL   S    WTALQI
Sbjct: 515  GNLNLQLANDSLLSLKMMFRKYFLGKAAAQQLAMFVSSYLPPPALLGVRSGSLHWTALQI 574

Query: 183  LQTALPVLFDSSGGRHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSL 359
            LQT LP  FD  G  + I  S  ++ DF+++ +PSL+NEI+TSIFF+KGPEEVLKFF+SL
Sbjct: 575  LQTVLPASFDCHGDSYLIKNSNFLKFDFDRDAMPSLINEILTSIFFQKGPEEVLKFFDSL 634

Query: 360  QPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRL 539
            QPLLME++F+ GFSVGL+D+S+P + +Q +Q+++Q +SPLLY LRS++NELVELQLEN L
Sbjct: 635  QPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQLENHL 694

Query: 540  RLEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFYSRTLVEDMAV 719
            R  KVP  NFILKLS++G L DSKS+SAINKVVQQI FLGLQLSDKG+FYS++L+ED+A 
Sbjct: 695  RSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVAS 754

Query: 720  LFQTKHPSG-VDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFK 896
            LF  ++ S  +DYPS ++GL+K CFFHGLDPYEEMVHSIS+REVMVRSSRGLTEPGTLFK
Sbjct: 755  LFHNRYSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPGTLFK 814

Query: 897  NLMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGI-DSQSFFPAGEPVGVLAATAMSNP 1073
            NLMAILRDVVICYDGTVRNVCSNSIIQ EY  K+G+    S FP GEPVGVLAATAMS P
Sbjct: 815  NLMAILRDVVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPGEPVGVLAATAMSTP 874

Query: 1074 AYKAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYCQENAAYLV 1253
            AYKAVLDS+PSSN+SW+MMKEILLCKV F N+PI RRVILYLN+C+CGR+YC ENAAY+V
Sbjct: 875  AYKAVLDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKYCNENAAYVV 934

Query: 1254 KNQLKKVSLKDAAVEFMIEYRSSENDAGL----VGHIHLNKE--LLKKFNITVHEVLDKC 1415
            K+ LKKV+LKDAA++FMIEY      +GL    VGH+HLN+   LLK+ NI + EVL +C
Sbjct: 935  KSHLKKVTLKDAAMDFMIEYNRQPTPSGLGPGLVGHVHLNRVRMLLKELNIDMTEVLRRC 994

Query: 1416 QENIFSFKKKKNTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETSDVQLEGVS 1595
            QE + SFKKKK    +  R                    DMPCL+F W +T DV LE  +
Sbjct: 995  QETMSSFKKKKKKIAHALRFSISEHCAFHQWNGEES--IDMPCLIF-WHQTRDVHLERTA 1051

Query: 1596 HILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAV 1775
            HILA  + P+L ETIIKGDPRI + ++IW SPD+T+W +NPS+ + GELA+D+ LEK+AV
Sbjct: 1052 HILADIVFPLLSETIIKGDPRIKSASVIWISPDSTSWQKNPSRWQDGELALDVCLEKSAV 1111

Query: 1776 KQKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTK 1955
            KQ GDAWR V+D CLP++HLIDT+RSVPYAI QVQELLG+SCAFDQ +QRL  SV+MV+K
Sbjct: 1112 KQNGDAWRNVLDCCLPVLHLIDTRRSVPYAIKQVQELLGISCAFDQMIQRLSKSVSMVSK 1171

Query: 1956 GVLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLF------------- 2096
            GVL +HLILL NSMTC G +IGF  GGYK LSR+L ++VPFT+ATLF             
Sbjct: 1172 GVLGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATLFVSPFHSLVLSLYM 1231

Query: 2097 ---------------TPRKCFEKAAEKRHIDSLSSIVASCSWGKHVSVGTGSRFEVLWDT 2231
                           TPRKCFEKAAEK H DSLSSIVASCSWGKHV+VGTGSRF++LWD 
Sbjct: 1232 KFNFFFLFFLNGXYTTPRKCFEKAAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQ 1291

Query: 2232 NKIGSKKEAGIDIYNFLQMVSVPDKEVADTDCLGADIDYLALEDEIVGEFGMSPEHDSGF 2411
             ++G K++  +D+YNFL MV     E   + CLG +I+ + +EDE  GE  +SPE  S  
Sbjct: 1292 KELGCKQDDVVDVYNFLHMVRSGKSEEPTSACLGEEIEDIMVEDE-YGELTLSPEPFSTS 1350

Query: 2412 GKPVFEDSADFQQGFEN 2462
             KPVFEDSA+F+   +N
Sbjct: 1351 EKPVFEDSAEFEHCLDN 1367


>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
          Length = 2054

 Score = 1014 bits (2622), Expect = 0.0
 Identities = 530/841 (63%), Positives = 639/841 (75%), Gaps = 6/841 (0%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTALQI 182
            G + LQ             K YF+DK A QQL MFASS++PQP     HS    WTALQ+
Sbjct: 491  GGMILQLACDSLLSLKIMFKTYFMDKIAAQQLVMFASSSLPQPAFWLTHSGDPFWTALQV 550

Query: 183  LQTALPVLFDSSGGRHRIVRSEIMEVDFNKELPSLVNEIVTSIFFEKGPEEVLKFFNSLQ 362
            LQTALP   D  G R  I  S+I+ +DFN+++ S++N+I  SI  EKG EEVLKFFN+LQ
Sbjct: 551  LQTALPTSLDCYGDRFLIKGSDILVLDFNRDV-SVINDIGASICSEKGSEEVLKFFNALQ 609

Query: 363  PLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRLR 542
            PLLMEN+FA GFSVGLEDFS+   VI+NI + +Q +SPLLYHLRS+YNELVELQLEN++R
Sbjct: 610  PLLMENIFAQGFSVGLEDFSISQEVIKNITKDIQLISPLLYHLRSTYNELVELQLENQIR 669

Query: 543  LEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFYSRTLVEDMAVL 722
              K PV NFILK S+MGNLID KSDSAINKVVQQI FLGLQ+SD+GKFYS+TLVED++ L
Sbjct: 670  FAKAPVTNFILKSSSMGNLIDPKSDSAINKVVQQIGFLGLQISDRGKFYSKTLVEDVSCL 729

Query: 723  FQTKHPSGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKNL 902
            +  K+P  VDYPS ++GLI+SCFFHGLDPYEE+VHSIS+REV+VRSSRGLTEPGTLFKNL
Sbjct: 730  YTRKYPENVDYPSAEHGLIRSCFFHGLDPYEEIVHSISTREVIVRSSRGLTEPGTLFKNL 789

Query: 903  MAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAYK 1082
            MAILRDVVICYDGTVRNVCSNSIIQFEY + S   +++ +PAGEPVGVLAATAMSNPAYK
Sbjct: 790  MAILRDVVICYDGTVRNVCSNSIIQFEYGRGS---ARNLYPAGEPVGVLAATAMSNPAYK 846

Query: 1083 AVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYCQENAAYLVKNQ 1262
            AVLDSSPSSN+SWE+MKEILLCK  F N+ I RRVILYLN C CGR+YC+E A YLV+NQ
Sbjct: 847  AVLDSSPSSNSSWELMKEILLCKAIFRNELIDRRVILYLNHCGCGRKYCREQATYLVQNQ 906

Query: 1263 LKKVSLKDAAVEFMIEYRSSEN------DAGLVGHIHLNKELLKKFNITVHEVLDKCQEN 1424
            LKKVSLKD AVEFMIEY++  +      +AGLVGHIHLN+ LLK+ +I ++E+L KC+E 
Sbjct: 907  LKKVSLKDTAVEFMIEYKNQSSFSAVDMNAGLVGHIHLNEVLLKEMDIGMNEILQKCEEA 966

Query: 1425 IFSFKKKKNTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETSDVQLEGVSHIL 1604
            I S +KKK   ++ K+                    + PCL+ S +E  +  LE  S IL
Sbjct: 967  INSVRKKK-LGKHLKKAVLSVSECCTFHKSGLDGTSEFPCLLISIRENMNDTLEESSKIL 1025

Query: 1605 AAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVKQK 1784
            A  ICP LLETIIKGD RI +  I W S DTT+  R+P  +  GELAVD+VL+K+A+K+ 
Sbjct: 1026 ADSICPFLLETIIKGDSRISSAKITWLSSDTTS-IRSPQNSDMGELAVDVVLDKSAIKRS 1084

Query: 1785 GDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKGVL 1964
            GDAWRIV+DSCLP++HLIDT+RS+PY I Q+QELLG+SCAFDQAVQRL  SV+MV+KGVL
Sbjct: 1085 GDAWRIVIDSCLPVLHLIDTRRSIPYGIKQIQELLGISCAFDQAVQRLSTSVSMVSKGVL 1144

Query: 1965 KEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLFTPRKCFEKAAEKRHID 2144
            KEHLILL NSMT AG LIGF  GGYK L+RSL V+VPFT+ATL TP++CFE+AAEK H+D
Sbjct: 1145 KEHLILLANSMTYAGNLIGFNSGGYKALTRSLNVQVPFTEATLITPKRCFERAAEKCHVD 1204

Query: 2145 SLSSIVASCSWGKHVSVGTGSRFEVLWDTNKIGSKKEAGIDIYNFLQMVSVPDKEVADTD 2324
            SL+SIVASCSWGKHV+VGTGSRF++LWDT K+   +  G+D+ NFL MVS    E A T 
Sbjct: 1205 SLTSIVASCSWGKHVAVGTGSRFDILWDTRKVEFNQAGGVDVNNFLHMVSTAYGEEASTA 1264

Query: 2325 CLGADIDYLALEDEIVGEFGMSPEHDSGFGKPVFEDSADFQQGFENQMVPGGDTNGSPWD 2504
            CLG +ID L   D+I  E  +SPE+ +   +PVFED  +FQ   E  + PG     S WD
Sbjct: 1265 CLGEEIDDLMPGDDI-AELCLSPENFNS-DRPVFEDIDEFQDISEKDL-PG----KSSWD 1317

Query: 2505 N 2507
            N
Sbjct: 1318 N 1318


>ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1 [Solanum lycopersicum]
          Length = 1632

 Score = 1000 bits (2586), Expect = 0.0
 Identities = 519/843 (61%), Positives = 625/843 (74%), Gaps = 9/843 (1%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTALQI 182
            G+ NLQ               YF DKAA QQLAMF    +P   ++    SG +WT LQI
Sbjct: 486  GNFNLQLATDSLLSLKLMFSHYFFDKAAAQQLAMFLPMALPDSAVVDVRKSGAMWTTLQI 545

Query: 183  LQTALPVLFDSSGGRHRIVRSEIMEVDFNKEL-PSLVNEIVTSIFFEKGPEEVLKFFNSL 359
            L  ALP  FDS G  H I +S+ + +D++++L  S++N+++TSI+F KGP +VLKFFNSL
Sbjct: 546  LGAALPDGFDSCGETHTIGKSQFLGIDYHRDLISSILNDVITSIYFMKGPNDVLKFFNSL 605

Query: 360  QPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRL 539
            QPLLMENL   GFS+ L DF +  +V   IQE +Q MS LL+HLRSSYNE VE+QLE+ L
Sbjct: 606  QPLLMENLCTEGFSISLRDFYMTKAVRDGIQERIQCMSKLLHHLRSSYNESVEVQLEHHL 665

Query: 540  RLEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFYSRTLVEDMAV 719
            R EK+PV +F+LK S MG LIDSKS+SA NKVVQQI FLGLQ+SD+GKFY++TLV DMA 
Sbjct: 666  RNEKLPVIDFVLKSSGMGVLIDSKSESAFNKVVQQIGFLGLQISDRGKFYTKTLVHDMAQ 725

Query: 720  LFQTKHPSGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKN 899
            LFQ K+PS    PS ++GL++SC F+GLDPY+ M+HSISSREV+VRS+RGLTEPGTLFKN
Sbjct: 726  LFQKKYPSVGTNPSEEFGLVRSCLFYGLDPYQGMIHSISSREVIVRSTRGLTEPGTLFKN 785

Query: 900  LMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAY 1079
            LMAILRDVVICYDGTVRNV SNSIIQFEY    G +  S F AG+PVGVLAATAMSNPAY
Sbjct: 786  LMAILRDVVICYDGTVRNVSSNSIIQFEYGSSGGSNLPSEFCAGDPVGVLAATAMSNPAY 845

Query: 1080 KAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYCQENAAYLVKN 1259
            KAVLDSSPSSN+SWEMMKEILLC V F ND   RRVILYLNDC C R YC+E AAY+VKN
Sbjct: 846  KAVLDSSPSSNSSWEMMKEILLCGVSFKNDVSDRRVILYLNDCGCRRGYCREKAAYVVKN 905

Query: 1260 QLKKVSLKDAAVEFMIE-------YRSSENDAGLVGHIHLNKELLKKFNITVHEVLDKCQ 1418
             L KV LKDAA EF+IE       Y +SE   GL+GHI LN+  L+   I+V EV ++CQ
Sbjct: 906  HLSKVCLKDAADEFLIEYAGRQAGYENSETGTGLIGHIRLNQGQLENLGISVLEVHERCQ 965

Query: 1419 ENIFSFKKKKNTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETSDVQLEGVSH 1598
            ENI SF+KKK     FKR                 K  + PCL FSW + SD  LE VSH
Sbjct: 966  ENISSFQKKKKIGNLFKRIVLSVSEFCSFCHNSGSKCLNAPCLRFSWPDASDDHLERVSH 1025

Query: 1599 ILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVK 1778
            ILA  ICP+LL+T+IKGDPR+ + NI W SPDT +W R+PSK+++GELA+DIVLEK AVK
Sbjct: 1026 ILADMICPILLDTVIKGDPRVSSANIAWISPDTMSWIRSPSKSQRGELALDIVLEKEAVK 1085

Query: 1779 QKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKG 1958
            Q+GDAWRI++DSCLP+IHLIDT RS+PYAI QVQEL+G+SCAF+QAV+RL  SVTMVTKG
Sbjct: 1086 QRGDAWRILMDSCLPVIHLIDTTRSIPYAIKQVQELIGISCAFEQAVKRLSTSVTMVTKG 1145

Query: 1959 VLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLFTPRKCFEKAAEKRH 2138
            VLK+HL+LL NSMTCAG L+GF  GG K LSRSL V++PFT+ATLFTPRKCFE+AAEK H
Sbjct: 1146 VLKDHLVLLANSMTCAGNLVGFNAGGIKALSRSLNVQIPFTEATLFTPRKCFERAAEKCH 1205

Query: 2139 IDSLSSIVASCSWGKHVSVGTGSRFEVLWDTNKIGSKKEAGIDIYNFLQMV-SVPDKEVA 2315
            +DSLSSIVASCSWGKHV+VGTGSRFEVL +T  +        D+Y+FL +V +   +EV 
Sbjct: 1206 VDSLSSIVASCSWGKHVAVGTGSRFEVLLNTRNVEWNIPDTRDVYSFLHLVRNTSAQEVE 1265

Query: 2316 DTDCLGADIDYLALEDEIVGEFGMSPEHDSGFGKPVFEDSADFQQGFENQMVPGGDTNGS 2495
             T CLGA+ID L  EDE +G + +SP  DSG   P FED A+F     N+ +  G  +GS
Sbjct: 1266 GTSCLGAEIDELE-EDEDMGLY-LSPNRDSGSEMPTFEDRAEFDY---NENLDEGKPSGS 1320

Query: 2496 PWD 2504
             W+
Sbjct: 1321 AWE 1323


>gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus guttatus]
          Length = 2113

 Score =  982 bits (2538), Expect = 0.0
 Identities = 509/842 (60%), Positives = 624/842 (74%), Gaps = 7/842 (0%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTALQI 182
            G+ NLQ             + YFL +AA QQLAMFA + + +P + K  +SG LWTA QI
Sbjct: 486  GAFNLQLANDSLLSLKVLFRKYFLSRAAAQQLAMFAPNVLSRPSVSKS-ASGPLWTAPQI 544

Query: 183  LQTALPVLFDSSGGRHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSL 359
            L+  LP  FDSSG RH I +SE++ VDF+ + +  +VN+IVTS+FF KGPEEV++FFNS+
Sbjct: 545  LELTLPPSFDSSGERHVISKSEVLSVDFSWDGMTPIVNDIVTSLFFLKGPEEVIRFFNSI 604

Query: 360  QPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRL 539
            QPLLMENL+  GFSV L +F LP  V+++IQE+LQ +SPLL+HLR+SY+E + LQ++N L
Sbjct: 605  QPLLMENLYTEGFSVSLREFFLPLDVLESIQENLQKISPLLFHLRASYSESIALQIDNYL 664

Query: 540  RLEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFYSRTLVEDMAV 719
            R  K+PV NF+ K S +G LIDSKS+SA++KVVQQI FLG+QLSDKGKFY+ TLV+DM+ 
Sbjct: 665  RNVKIPVTNFV-KSSAVGRLIDSKSESALSKVVQQIGFLGIQLSDKGKFYTETLVQDMSS 723

Query: 720  LFQTKHPSGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKN 899
            LFQ K+PS   YP+ ++ L+    F GL+PY+EMVHSI+SREV+VRS+RGLTEPGTLFKN
Sbjct: 724  LFQKKYPSCDGYPAEEFSLVSRPLFRGLNPYQEMVHSIASREVIVRSTRGLTEPGTLFKN 783

Query: 900  LMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAY 1079
            LMAILRDVVIC+DGTVRN+CSNSIIQFEY   +  +  S F AG+PVGVLAATAMSNPAY
Sbjct: 784  LMAILRDVVICHDGTVRNMCSNSIIQFEYGVNTA-NIASEFCAGDPVGVLAATAMSNPAY 842

Query: 1080 KAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYCQENAAYLVKN 1259
            KAVLDSS SSN+SWEMMKEILLC V F ND   RRVILYL+ C CGR++CQE+AA +VKN
Sbjct: 843  KAVLDSSSSSNSSWEMMKEILLCGVSFKNDITDRRVILYLSHCDCGRKHCQESAALVVKN 902

Query: 1260 QLKKVSLKDAAVEFMIEYRSS------ENDAGLVGHIHLNKELLKKFNITVHEVLDKCQE 1421
            QLKKVSLKD A+EF+IEYRS       E   GLVGHIHLNK  L + NI++ +VL+KC+E
Sbjct: 903  QLKKVSLKDTAMEFLIEYRSQSVHESHETSHGLVGHIHLNKTQLVQSNISMDDVLEKCRE 962

Query: 1422 NIFSFKKKKNTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETSDVQLEGVSHI 1601
             I    KKK     FK+                 K  D+PC+ F WQ   D  LE  S+ 
Sbjct: 963  TIILQHKKKKVGNLFKKVELSVSDCCSFCQSSKSKLTDVPCIQFFWQGAPDNLLERASYF 1022

Query: 1602 LAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVKQ 1781
            LA  +CPVLL+TIIKGDPRI T N++W SPDT TW R+PSK+  GELA+DIVLEK AV++
Sbjct: 1023 LADTVCPVLLQTIIKGDPRISTANVVWLSPDTPTWIRSPSKSPIGELALDIVLEKEAVRK 1082

Query: 1782 KGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKGV 1961
             GDAWR+V+DSCLP++HLIDT+RS+PY I QVQELLG+SCAF+QAVQRL  SVTMVTKGV
Sbjct: 1083 SGDAWRVVMDSCLPVMHLIDTQRSIPYGIKQVQELLGISCAFEQAVQRLSTSVTMVTKGV 1142

Query: 1962 LKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLFTPRKCFEKAAEKRHI 2141
            LK+HL+LLGNSMTCAGTLIGF  GG K LSR L V+VPF  ATLFTPRKCFEKAAEK ++
Sbjct: 1143 LKDHLLLLGNSMTCAGTLIGFNSGGIKALSRLLGVQVPFMNATLFTPRKCFEKAAEKCYV 1202

Query: 2142 DSLSSIVASCSWGKHVSVGTGSRFEVLWDTNKIGSKKEAGIDIYNFLQMVSVPDKEVADT 2321
            D+LSSIVASC+WGKHVSVGTGS FE+LWDT K     +  ID+Y+FL MV+    E A T
Sbjct: 1203 DNLSSIVASCAWGKHVSVGTGSPFEILWDTRKAELSPDKEIDVYDFLHMVNSSKLEDAGT 1262

Query: 2322 DCLGADIDYLALEDEIVGEFGMSPEHDSGFGKPVFEDSADFQQGFENQMVPGGDTNGSPW 2501
             CLGADI+ L  ED +  +  +SP  + G  KP FE   +F    +     GG  +   W
Sbjct: 1263 SCLGADIEDLGQEDYM--DLDLSPVREPGSEKPTFECEVEFGLNGDGFSKEGGKESEDSW 1320

Query: 2502 DN 2507
             +
Sbjct: 1321 SS 1322


>gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1127

 Score =  981 bits (2536), Expect = 0.0
 Identities = 512/843 (60%), Positives = 615/843 (72%), Gaps = 9/843 (1%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTALQI 182
            G+ N Q               YF DKAA QQLAMF    +P   ++    SG +WT LQI
Sbjct: 37   GNFNSQLATDSLLSLKLMFSHYFFDKAAAQQLAMFLPMALPDSAVVDVRKSGAMWTTLQI 96

Query: 183  LQTALPVLFDSSGGRHRIVRSEIMEVDFNKEL-PSLVNEIVTSIFFEKGPEEVLKFFNSL 359
            L  ALP  FDS G  H I +S+ + +D++++L  S++N+++TSI+F KGP +VLKFFNSL
Sbjct: 97   LGAALPDGFDSCGETHTIGKSQFLGIDYHRDLISSILNDVITSIYFMKGPNDVLKFFNSL 156

Query: 360  QPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRL 539
            QPLLMENL   GFS+ L DF +  +V   IQE +Q MS LL+HLRSSYNE VE+QLE+ L
Sbjct: 157  QPLLMENLCTEGFSISLRDFYMTKAVRDGIQERIQCMSKLLHHLRSSYNESVEVQLEHHL 216

Query: 540  RLEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFYSRTLVEDMAV 719
            R EK+PV +F+LK S MG LIDSKS+SA NKVVQQI FLGLQ+SD+GKFY  TLV DMA 
Sbjct: 217  RNEKLPVIDFVLKSSGMGVLIDSKSESAFNKVVQQIGFLGLQISDRGKFYXXTLVHDMAQ 276

Query: 720  LFQTKHPSGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFKN 899
            LFQ K+PS    PS ++GL++SC F+GLDPY+ M+HSISSREV+VRS+RGLTEPGTLF N
Sbjct: 277  LFQKKYPSVGTNPSEEFGLVRSCLFYGLDPYQGMIHSISSREVIVRSTRGLTEPGTLFXN 336

Query: 900  LMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPAY 1079
            LMAILRDVVICYDGTVRNV SNSIIQFEY    G +  S F AG+PVGVLAATAMSNPAY
Sbjct: 337  LMAILRDVVICYDGTVRNVSSNSIIQFEYGSSGGSNLPSEFCAGDPVGVLAATAMSNPAY 396

Query: 1080 KAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYCQENAAYLVKN 1259
            KA LDSSPSSN+SWEMMKEILLC V F ND   RRVILYLNDC C R YC+E AAY+VKN
Sbjct: 397  KAXLDSSPSSNSSWEMMKEILLCGVSFKNDVSDRRVILYLNDCGCRRGYCREKAAYVVKN 456

Query: 1260 QLKKVSLKDAAVEFMIE-------YRSSENDAGLVGHIHLNKELLKKFNITVHEVLDKCQ 1418
             L KV LKDAA EF+IE       Y +SE   GL+GHI LN+  L+   I+V EV ++CQ
Sbjct: 457  HLSKVCLKDAADEFLIEYAGRQAGYENSETGTGLIGHIRLNQGQLENLGISVLEVHERCQ 516

Query: 1419 ENIFSFKKKKNTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETSDVQLEGVSH 1598
            ENI SF+ KK     FKR                 K  + PCL FSW + SD  LE VSH
Sbjct: 517  ENISSFRXKKKIGNLFKRIVLSVSEFCSFCHNSGSKCLNAPCLRFSWPDASDDHLERVSH 576

Query: 1599 ILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVK 1778
            ILA  I P+LL+T+IKGDPR+ + NI W SPDT +W R+PSK+++GELA+DIVLEK AVK
Sbjct: 577  ILADMIXPILLDTVIKGDPRVSSANIAWISPDTMSWIRSPSKSQRGELALDIVLEKEAVK 636

Query: 1779 QKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKG 1958
             +GDAWR ++DSCLP+IHLIDT RS+PYAI QVQEL+G+SCAF+QAV RL  SVTMVTKG
Sbjct: 637  XRGDAWRXLMDSCLPVIHLIDTTRSIPYAIKQVQELIGISCAFEQAVXRLSTSVTMVTKG 696

Query: 1959 VLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLFTPRKCFEKAAEKRH 2138
            VLK+HL+LL NSMTCAG L+GF  GG K LSRSL V++PFT+ATLFTPRKCFE+AAEK H
Sbjct: 697  VLKDHLVLLANSMTCAGNLVGFNAGGIKALSRSLNVQIPFTEATLFTPRKCFERAAEKCH 756

Query: 2139 IDSLSSIVASCSWGKHVSVGTGSRFEVLWDTNKIGSKKEAGIDIYNFLQMV-SVPDKEVA 2315
            +DSLSSIVASCSWGKHV+VGTGSRFEVL +T  +        D+Y+FL +V +   +EV 
Sbjct: 757  VDSLSSIVASCSWGKHVAVGTGSRFEVLLNTRNVEWNIPDTRDVYSFLHLVRNTSAQEVE 816

Query: 2316 DTDCLGADIDYLALEDEIVGEFGMSPEHDSGFGKPVFEDSADFQQGFENQMVPGGDTNGS 2495
             T CLGA+ID L  EDE +G + +SP  DSG   P FED A+F     N+ +  G  +GS
Sbjct: 817  GTSCLGAEIDELE-EDEDMGLY-LSPNRDSGSEMPTFEDRAEFDY---NENLDEGKPSGS 871

Query: 2496 PWD 2504
             W+
Sbjct: 872  AWE 874


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score =  974 bits (2518), Expect = 0.0
 Identities = 499/852 (58%), Positives = 628/852 (73%), Gaps = 18/852 (2%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKG----------HS 152
            G+LNLQ             ++YFLD+A+  QLAM+ASS +P P L K           HS
Sbjct: 276  GNLNLQLSTDSLLSLKTMFEVYFLDRASANQLAMYASSLLPSPALWKACSSNAKKKKAHS 335

Query: 153  SGELWTALQILQTALPVLFDSSGGRHRIVRSEIMEVDFNKEL-PSLVNEIVTSIFFEKGP 329
            SG  WTA Q+LQTALP  F+  G R  I  SEI+++DFN+++  S++++++TS+FF K P
Sbjct: 336  SGPRWTAQQVLQTALPSHFECHGDRLLIHDSEILKLDFNRDIVASVISDVLTSLFFNKSP 395

Query: 330  EEVLKFFNSLQPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNE 509
            ++ L FF+SLQPLLMENLF+ GFSV L DF  P S +QNIQ ++QD+SPLL  LRSS+NE
Sbjct: 396  KDALDFFDSLQPLLMENLFSEGFSVSLHDFFFPKSELQNIQRNIQDLSPLLLQLRSSFNE 455

Query: 510  LVELQLENRLRLEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFY 689
            LV++Q EN +R  K PV NFIL  S +G++IDS+SDSAI+K+VQQI FLGLQLSD+ KFY
Sbjct: 456  LVQVQFENHIREFKSPVGNFILISSALGSMIDSRSDSAIDKIVQQIGFLGLQLSDRRKFY 515

Query: 690  SRTLVEDMAVLFQTKHPSGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRG 869
            SR LVED+A LF  K+P    YPS ++G +  CFFHGLDPYEE+VHSI++REV+VRSS+G
Sbjct: 516  SRGLVEDVASLFHQKYPFADVYPSEEFGFVSRCFFHGLDPYEEIVHSIATREVIVRSSKG 575

Query: 870  LTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVL 1049
            L EPGTLFKNLMA+LRDVVICYDGTVRN+ SNS+IQFEY    G+ SQ+ FPAG+PVGVL
Sbjct: 576  LAEPGTLFKNLMAVLRDVVICYDGTVRNISSNSVIQFEYGV-GGMQSQNLFPAGDPVGVL 634

Query: 1050 AATAMSNPAYKAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYC 1229
            AATAMSNPAYKAVLDSSP+SN+SW+MMKEIL C+  F ND   RRVILYLNDC CGR+YC
Sbjct: 635  AATAMSNPAYKAVLDSSPNSNSSWDMMKEILFCRANFRNDINDRRVILYLNDCCCGRKYC 694

Query: 1230 QENAAYLVKNQLKKVSLKDAAVEFMIEYR-------SSENDAGLVGHIHLNKELLKKFNI 1388
            QENA+ LVKN LKKVSL+DAA+E  IEY+       S E DAGLVGHIHLN  LLK   I
Sbjct: 695  QENASCLVKNHLKKVSLRDAAIELAIEYKRPKLEPESCEIDAGLVGHIHLNSGLLKASGI 754

Query: 1389 TVHEVLDKCQENIFSFKKKKNTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQET 1568
             +H++L KC+E +   +KKK    +FKR                 KW DMPCL F WQ+ 
Sbjct: 755  GMHDILQKCEEQVNLLRKKKKYGYHFKRILLSVSDCCFFNHSDS-KWTDMPCLKFFWQDM 813

Query: 1569 SDVQLEGVSHILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAV 1748
            +D  LE   HI+A  ICPVLL+TIIKGDPRI TVNIIW +P TTTW ++P  + KGELAV
Sbjct: 814  TDTDLERTKHIMADMICPVLLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSSTKGELAV 873

Query: 1749 DIVLEKAAVKQKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRL 1928
            ++ LEK AV+  GDAWRIV+D CLP+ HLIDT+RS+PYAI Q+Q+L G+SCAFDQAVQRL
Sbjct: 874  EVALEKEAVRLTGDAWRIVLDCCLPVFHLIDTRRSIPYAIKQIQDLFGISCAFDQAVQRL 933

Query: 1929 FASVTMVTKGVLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLFTPRK 2108
              SVTMVTKGVLKEHL+LL +SMTCAG L+GF   G K L R+L V+VPFT+ATL+TPRK
Sbjct: 934  STSVTMVTKGVLKEHLLLLASSMTCAGNLVGFNTSGIKALCRALNVQVPFTEATLYTPRK 993

Query: 2109 CFEKAAEKRHIDSLSSIVASCSWGKHVSVGTGSRFEVLWDTNKIGSKKEAGIDIYNFLQM 2288
            CFE+A+EK H+D+L+SIV SCSWGK VS+GTG++F++LW+T +I    +   D+YNFL +
Sbjct: 994  CFERASEKCHVDTLASIVGSCSWGKRVSIGTGAKFDLLWETKEI-EMADKPTDVYNFLHL 1052

Query: 2289 VSVPDKEVADTDCLGADIDYLALEDEIVGEFGMSPEHDSGFGKPVFEDSADFQQGFENQM 2468
            VS  ++E  D+  LG DI+  + E ++  E  +SPE ++   K VFE++ +   G ++  
Sbjct: 1053 VSSANEEEVDSGGLGEDIE--SFEKDVYMEPALSPEQEN---KAVFEETLEI--GVDSD- 1104

Query: 2469 VPGGDTNGSPWD 2504
            + G D   S WD
Sbjct: 1105 ITGADE--SSWD 1114


>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
            arietinum]
          Length = 2263

 Score =  971 bits (2509), Expect = 0.0
 Identities = 496/844 (58%), Positives = 616/844 (72%), Gaps = 9/844 (1%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTALQI 182
            G+LNLQ             K  FLD+AA  Q+AMF S  +P P L K  S    WT++Q+
Sbjct: 489  GNLNLQLSTDSLLSLKMLVKSCFLDRAAANQMAMFLSLPLPMPALFKAGSGDSYWTSVQM 548

Query: 183  LQTALPVLFDSSGGRHRIVRSEIMEVDFNKEL-PSLVNEIVTSIFFEKGPEEVLKFFNSL 359
            LQ ALP  FD +GGR+ I + EI+E DF ++L PS++NE+  SIFF +GP+E L FF+ L
Sbjct: 549  LQCALPSSFDCTGGRYLIRQREILEFDFTRDLLPSIINEVAASIFFSQGPKEALNFFDVL 608

Query: 360  QPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRL 539
            QP LMEN+FA G+SVGL+DFS+  +V + I   +  +SPLL+ LR  Y ELV  QLE  +
Sbjct: 609  QPFLMENIFAHGYSVGLQDFSISRAVKRVINRSIGKISPLLHQLRVVYKELVAQQLEKHM 668

Query: 540  RLEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFYSRTLVEDMAV 719
            +  ++PV NF LK + +G+LIDSKS SA++KVVQQI FLG QL ++GKFYS+ LVED+  
Sbjct: 669  QDIELPVINFALKSTKLGDLIDSKSKSALDKVVQQIGFLGQQLFERGKFYSKGLVEDVGS 728

Query: 720  LFQTK-HPSGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFK 896
             F  K    G  YPS ++GL+K CFFHGLDPYEE+VHSI++RE++VRSSRGL+EPGTLFK
Sbjct: 729  HFHVKCFYDGDGYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIVRSSRGLSEPGTLFK 788

Query: 897  NLMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPA 1076
            NLMAILRDVVICYDGTVRNVCSNSIIQFEY  +SG  SQ  FPAGEPVGVLAAT+MSNPA
Sbjct: 789  NLMAILRDVVICYDGTVRNVCSNSIIQFEYGIQSGDKSQPLFPAGEPVGVLAATSMSNPA 848

Query: 1077 YKAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYCQENAAYLVK 1256
            YKAVLD+SPSSN+SWE MKEILLCKV F N+P  RRVILYLNDC CGR YC+ENAAYLVK
Sbjct: 849  YKAVLDASPSSNSSWEFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRSYCRENAAYLVK 908

Query: 1257 NQLKKVSLKDAAVEFMIEYRSSEN------DAGLVGHIHLNKELLKKFNITVHEVLDKCQ 1418
            NQL+KVSLKDAA++F +EY+          DAGLVGHIHLN+ +L+K  I + EV  KCQ
Sbjct: 909  NQLRKVSLKDAALDFTVEYQQQRRRNDGSEDAGLVGHIHLNEAMLEKLKINMSEVYQKCQ 968

Query: 1419 ENIFSFKKKKNTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETSDVQLEGVSH 1598
            E + SF +KK    +F++                      PC+   W +  D  L+  + 
Sbjct: 969  ERLNSFSRKKKVFHFFRKTELFFSESCSSLNS------SAPCVTILWPDGDD--LDQTTK 1020

Query: 1599 ILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVK 1778
            +LA  ICPVLL+TII+GDPRI + NIIW +P T TW RNPSK+  GELA+D++LEK AVK
Sbjct: 1021 VLADMICPVLLDTIIQGDPRISSANIIWVNPGTNTWVRNPSKSSNGELALDVILEKEAVK 1080

Query: 1779 QKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKG 1958
            Q GDAWRI++DSCLP++HLIDT+RS PYAI Q+QELLG+SC FDQA+QRL ASV MV KG
Sbjct: 1081 QSGDAWRIILDSCLPVLHLIDTRRSTPYAIKQIQELLGISCTFDQAIQRLAASVRMVAKG 1140

Query: 1959 VLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLFTPRKCFEKAAEKRH 2138
            VL+EHLILL +SMTC G L+GF  GGYK L+R L ++VPFT ATLFTPRKCFE+AAEKRH
Sbjct: 1141 VLREHLILLASSMTCGGNLVGFNTGGYKTLARQLNIQVPFTDATLFTPRKCFERAAEKRH 1200

Query: 2139 IDSLSSIVASCSWGKHVSVGTGSRFEVLWDTNKIGSKKEAGIDIYNFLQMV-SVPDKEVA 2315
             DSLSSIVASCSWGKHV+VGTGSRF+++WD  ++ S +  G+D+YNFL MV  + + +  
Sbjct: 1201 ADSLSSIVASCSWGKHVAVGTGSRFDIVWDPKEVKSNEIEGMDVYNFLNMVKGLANGDEE 1260

Query: 2316 DTDCLGADIDYLALEDEIVGEFGMSPEHDSGFGKPVFEDSADFQQGFENQMVPGGDTNGS 2495
            +  CLG DID L  +D +  ++GMSPEH SGF        A F + FE  ++ G  +NG 
Sbjct: 1261 NNACLGEDIDDLLDDDNM--DWGMSPEHTSGF-------DAVFDESFE--LLNGSTSNG- 1308

Query: 2496 PWDN 2507
             WD+
Sbjct: 1309 -WDS 1311


>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2082

 Score =  964 bits (2491), Expect = 0.0
 Identities = 497/827 (60%), Positives = 618/827 (74%), Gaps = 10/827 (1%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTALQI 182
            G+LNLQ             K  F D+AA  QLAMF    +P+P LLK  S    WT++QI
Sbjct: 489  GNLNLQLSTDSLLSLKMLVKRCFFDRAAANQLAMFILLPLPRPALLKASSGDACWTSIQI 548

Query: 183  LQTALPVLFDSSGGRHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSL 359
            LQ ALP+ FD +GGR+ I +SEI+E +F+++ LP+ VNEI  S+FF KGP+E L FF+ L
Sbjct: 549  LQCALPLGFDCTGGRYLIRQSEILEFEFSRDVLPATVNEIAASVFFGKGPKEALNFFDVL 608

Query: 360  QPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRL 539
            QP LME+LFA GFSV LE+FS+  ++ + I++ +  +S LLY LRS YNELV  QLE  +
Sbjct: 609  QPFLMESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLLYQLRSLYNELVAQQLEKHI 668

Query: 540  RLEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFYSRTLVEDMAV 719
            R  ++P+ NF LK + +G+LIDSKS SAI+KVVQQI FLG QL D+G+FYS+ LV+D+A 
Sbjct: 669  RDVELPIINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRFYSKGLVDDVAS 728

Query: 720  LFQTKHP-SGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFK 896
             F  K    G  YPS +YGL+K CFF+GLDPYEEMVHSIS+RE+MVRSSRGL+EPGTLFK
Sbjct: 729  HFHAKCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGTLFK 788

Query: 897  NLMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPA 1076
            NLMAILRDVVICYDGTVRN+CSNSIIQFEY  ++G  S+  FPAGEPVGVLAATAMSNPA
Sbjct: 789  NLMAILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKSEHLFPAGEPVGVLAATAMSNPA 848

Query: 1077 YKAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYCQENAAYLVK 1256
            YKAVLD+SPSSN+SWE+MKEILLCKV F N+ + RRVILYLNDC CG  YC+ENAAY VK
Sbjct: 849  YKAVLDASPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSYCRENAAYSVK 908

Query: 1257 NQLKKVSLKDAAVEFMIEYR-------SSENDAGLVGHIHLNKELLKKFNITVHEVLDKC 1415
            +QL+KVSLKDAAVEF+IEY+       +SE D GLVGHI+L++ +L++  I++  V DKC
Sbjct: 909  DQLRKVSLKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEMMLEELKISMAYVFDKC 968

Query: 1416 QENIFSFKKKKNTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETSDVQLEGVS 1595
             E + SF +KK   Q  K                       PCL F W +  D  L+   
Sbjct: 969  HERLKSFSQKKKVNQSLKNIELSFSESCSSSHPAA------PCLTF-WLKNYDSDLDNAV 1021

Query: 1596 HILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAV 1775
             +LA KICPVL +TII+GDPRI + +IIW SPDT TW RNP K+  GELA+DI+LEK AV
Sbjct: 1022 KVLAEKICPVLFKTIIQGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIILEKEAV 1081

Query: 1776 KQKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTK 1955
            KQ GDAWR+V+D+CLP++HLIDT+RS+PYAI Q+QELLG+SC FDQA+QR+ ASV MV K
Sbjct: 1082 KQSGDAWRVVLDACLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAASVKMVAK 1141

Query: 1956 GVLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLFTPRKCFEKAAEKR 2135
            GVL+EHLILL +SMTC G L+GF +GGYK LSR L ++VPFT ATLFTP+KCFE+AAEK 
Sbjct: 1142 GVLREHLILLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFTDATLFTPKKCFERAAEKC 1201

Query: 2136 HIDSLSSIVASCSWGKHVSVGTGSRFEVLWDTNKIGSKKEAGIDIYNFLQMVSVPDKEVA 2315
            H DSLSSIVASCSWGKHV+VGTGS+F+V+WD N+I S +  G+D+Y+FL MV        
Sbjct: 1202 HTDSLSSIVASCSWGKHVAVGTGSKFDVVWDANEIKSNEIEGMDVYSFLHMVKSFTNGEE 1261

Query: 2316 DTD-CLGADIDYLALEDEIVGEFGMSPEHDSGFGKPVFEDSADFQQG 2453
            +TD CLG DID L LE+E + + GMSP+H+SGF + VFE++ +   G
Sbjct: 1262 ETDACLGEDIDDL-LEEEYM-DLGMSPQHNSGF-EAVFEENPEVLNG 1305


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2020

 Score =  961 bits (2483), Expect = 0.0
 Identities = 496/827 (59%), Positives = 617/827 (74%), Gaps = 10/827 (1%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTALQI 182
            G+LNLQ             K  FL +AA  QLAMF    +P+P LLK  S    WT++QI
Sbjct: 489  GNLNLQLSTDSLLALKMLVKRCFLGRAAANQLAMFLLLPLPRPALLKASSDDACWTSIQI 548

Query: 183  LQTALPVLFDSSGGRHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSL 359
            LQ ALP+ FD +GGR+ I +SEI+E DF+++ LP+ +NEI  SIFF KGP E LKFF+ L
Sbjct: 549  LQGALPMGFDCTGGRYLIRQSEILEFDFSRDALPATINEIAASIFFGKGPMEALKFFDVL 608

Query: 360  QPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRL 539
            QP LME+LFA GFSV LE+FS+  ++ + I+  +   S LLY LRS YNELV  QLE  +
Sbjct: 609  QPFLMESLFAEGFSVSLEEFSISRAIKRIIRRSIGKASSLLYQLRSLYNELVAQQLEKHI 668

Query: 540  RLEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFYSRTLVEDMAV 719
            +  ++P+ NF LK + +G+LIDSKS S I+KVVQQ+ FLG QL D+G+FYS+ LV+D+A 
Sbjct: 669  QDVELPIINFALKSTKLGDLIDSKSKSTIDKVVQQVGFLGQQLFDRGRFYSKGLVDDVAS 728

Query: 720  LFQTKHP-SGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFK 896
             F  K    G  YPS +YGL+K CFF+GLDPYEEMVHSIS+RE+MVRSSRGL+EPGTLFK
Sbjct: 729  HFHAKCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGTLFK 788

Query: 897  NLMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPA 1076
            NLMAILRDVVICYDGTVRN+CSNSIIQFEY  ++G  ++  FPAGEPVGVLAATAMSNPA
Sbjct: 789  NLMAILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKTEHLFPAGEPVGVLAATAMSNPA 848

Query: 1077 YKAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYCQENAAYLVK 1256
            YKAVLD+SP+SN+SWE+MKEILLCKV F N+P+ RRVILYLNDC CG   C+ENAAY VK
Sbjct: 849  YKAVLDASPNSNSSWELMKEILLCKVNFRNEPVDRRVILYLNDCDCGGSCCRENAAYSVK 908

Query: 1257 NQLKKVSLKDAAVEFMIEYR-------SSENDAGLVGHIHLNKELLKKFNITVHEVLDKC 1415
            NQL+KVSLK+AAVEF+IEY+       +SE DAGLVGHI+L++ +L++  I++  V +KC
Sbjct: 909  NQLRKVSLKNAAVEFIIEYQQQRTQKENSETDAGLVGHIYLDEMMLEELKISMANVFEKC 968

Query: 1416 QENIFSFKKKKNTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETSDVQLEGVS 1595
             E + SF +KK   QY K                       PCL F W +  D  L+   
Sbjct: 969  LERLKSFSRKKKVNQYLKNIELSFSESCSSSHPAA------PCLTF-WLKNHDSDLDNAV 1021

Query: 1596 HILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAV 1775
             +L+  ICPVL ETIIKGDPRI + +IIW SPDT TW RNP K+  GELA+DIVLE+ AV
Sbjct: 1022 KVLSENICPVLFETIIKGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIVLEEEAV 1081

Query: 1776 KQKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTK 1955
            KQ GDAWRIV+DSCLP++HLIDT+RS+PYAI Q+QELLG+SC FDQA+QR+ ASV MV K
Sbjct: 1082 KQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAASVKMVAK 1141

Query: 1956 GVLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLFTPRKCFEKAAEKR 2135
            GVL+EHLILL +SMTC G L+GF  GGYK LSR L ++VPFT ATLFTP+KCFE+AAEK 
Sbjct: 1142 GVLREHLILLASSMTCGGNLVGFNTGGYKALSRQLNIQVPFTDATLFTPKKCFERAAEKC 1201

Query: 2136 HIDSLSSIVASCSWGKHVSVGTGSRFEVLWDTNKIGSKKEAGIDIYNFLQMV-SVPDKEV 2312
            H DSLSSIVASCSWGKHV+VGTGS+F+++WD+++I S +  G+D+Y+FL MV SV + E 
Sbjct: 1202 HTDSLSSIVASCSWGKHVAVGTGSKFDIVWDSSEIKSNEIEGMDVYSFLHMVKSVTNGEE 1261

Query: 2313 ADTDCLGADIDYLALEDEIVGEFGMSPEHDSGFGKPVFEDSADFQQG 2453
                CLG DID L LE+E + + GMSP+H+SGF + VFE++ +   G
Sbjct: 1262 ETDACLGEDIDDL-LEEEYM-DLGMSPQHNSGF-EAVFEENPEVLNG 1305


>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
            gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
            subunit [Medicago truncatula]
          Length = 2032

 Score =  939 bits (2426), Expect = 0.0
 Identities = 492/870 (56%), Positives = 612/870 (70%), Gaps = 35/870 (4%)
 Frame = +3

Query: 3    GSLNLQXXXXXXXXXXXXXKMYFLDKAAVQQLAMFASSNIPQPVLLKGHSSGELWTALQI 182
            G+LNLQ             K  FLD+ A  Q+AMF    +P P LLK  +    WT++QI
Sbjct: 571  GNLNLQLSADSLLSLKMLVKSCFLDRVAANQMAMFLLLPLPMPALLKATTGDSYWTSIQI 630

Query: 183  LQTALPVLFDSSGGRHRIVRSEIMEVDFNKE-LPSLVNEIVTSIFFEKGPEEVLKFFNSL 359
            LQ ALP  FD +GGR+ I + EI+E DF ++ LPS++NEI  SIFF KGP+E L FF+ +
Sbjct: 631  LQCALPFSFDCTGGRYLIRQREILEFDFTRDILPSIINEIAASIFFSKGPQEALNFFDVI 690

Query: 360  QPLLMENLFAVGFSVGLEDFSLPTSVIQNIQEHLQDMSPLLYHLRSSYNELVELQLENRL 539
            QP LMEN+FA GFSVGL+DFS+  +V + I   +  +SPLL  LR  Y ELV  QLE  +
Sbjct: 691  QPFLMENIFAHGFSVGLQDFSISRAVKRVINRSIGKVSPLLRQLRGMYKELVAQQLEKVI 750

Query: 540  RLEKVPVANFILKLSTMGNLIDSKSDSAINKVVQQIAFLGLQLSDKGKFYSRTLVEDMAV 719
            +  ++PV NF LK + +G+LIDSKS SA++KV+QQI FLG QL ++GKFYS+ LVED+A 
Sbjct: 751  QDIELPVINFALKSTKLGDLIDSKSKSAVDKVIQQIGFLGQQLFERGKFYSKGLVEDVAS 810

Query: 720  LFQTK-HPSGVDYPSGKYGLIKSCFFHGLDPYEEMVHSISSREVMVRSSRGLTEPGTLFK 896
             FQ K      DYPS ++GL+K CFFHGLDPYEE+VHSI++RE++ RSSRGL+EPGTLFK
Sbjct: 811  HFQLKCFYDKDDYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIDRSSRGLSEPGTLFK 870

Query: 897  NLMAILRDVVICYDGTVRNVCSNSIIQFEYAQKSGIDSQSFFPAGEPVGVLAATAMSNPA 1076
            NLMAILRDVVICYDGTVRNVCSNSIIQFEY  +SG  +Q  FPAGEPVGVLAAT+MSNPA
Sbjct: 871  NLMAILRDVVICYDGTVRNVCSNSIIQFEYGIQSGDAAQHLFPAGEPVGVLAATSMSNPA 930

Query: 1077 YKAVLDSSPSSNNSWEMMKEILLCKVKFSNDPIHRRVILYLNDCSCGREYCQENAAYLVK 1256
            YKAVLD+SPSSN+SW  MKEILLCKV F N+P  RRVILYLNDC CGR YC+ENAAYLV+
Sbjct: 931  YKAVLDASPSSNSSWGFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRNYCRENAAYLVQ 990

Query: 1257 NQLKKVSLKDAAVEFMIEY------RSSENDAGLVGHIHLNKELLKKFNITVHEVLDKCQ 1418
            NQL+KVSLKDAA++F++EY      R    DAGLV HI L +  L++  I + EV  KCQ
Sbjct: 991  NQLRKVSLKDAALDFIVEYQQQRRRRDGTEDAGLVCHIRLKEVKLEELKINMTEVYQKCQ 1050

Query: 1419 ENIFSFKKKKNTAQYFKRXXXXXXXXXXXXXXXXXKWCDMPCLMFSWQETSDVQLEGVSH 1598
            E + SF +KK  + +FKR                 ++C  PC+ F W +   V L+  + 
Sbjct: 1051 EKLNSFSRKKKLSPFFKR-----------TELIFSEFCSAPCVTFLWPD--GVDLDQTTK 1097

Query: 1599 ILAAKICPVLLETIIKGDPRICTVNIIWTSPDTTTWTRNPSKTRKGELAVDIVLEKAAVK 1778
            +LA  ICPVLLETII+GDPRI + +IIW +P T TW RNPSK+  GELA+D++LEK AVK
Sbjct: 1098 VLADMICPVLLETIIQGDPRISSASIIWVNPGTNTWVRNPSKSSNGELALDVILEKEAVK 1157

Query: 1779 QKGDAWRIVVDSCLPIIHLIDTKRSVPYAITQVQELLGVSCAFDQAVQRLFASVTMVTKG 1958
            Q GDAWRIV+DSCLP++HLIDT+RS+PYAI Q+QELLG++C FDQA+QRL ASV MV KG
Sbjct: 1158 QSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGIACTFDQAIQRLAASVRMVAKG 1217

Query: 1959 VLKEHLILLGNSMTCAGTLIGFTVGGYKELSRSLKVEVPFTKATLF-------------- 2096
            VL+EHLILL +SMTC G L+GF  GGYK L+R L ++VPFT ATLF              
Sbjct: 1218 VLREHLILLASSMTCGGNLVGFNTGGYKTLARQLDIQVPFTDATLFVSALVISKLQDVFC 1277

Query: 2097 ------------TPRKCFEKAAEKRHIDSLSSIVASCSWGKHVSVGTGSRFEVLWDTNKI 2240
                        TPRKCFE+AAEK H DSLSSIVASCSWGKHV+VGTGS+F+++WD  +I
Sbjct: 1278 YYFSYFVNVIMQTPRKCFERAAEKHHSDSLSSIVASCSWGKHVAVGTGSKFDIVWDPKEI 1337

Query: 2241 GSKKEAGIDIYNFLQMV-SVPDKEVADTDCLGADIDYLALEDEIVGEFGMSPEHDSGFGK 2417
             + +  G+++Y FL MV  + + E     CLG DID   L D+  G+F MSP+H SGF  
Sbjct: 1338 KTNEIEGMNVYKFLNMVKGLANGEEETNACLGEDID--DLFDDENGDFDMSPQHASGF-- 1393

Query: 2418 PVFEDSADFQQGFENQMVPGGDTNGSPWDN 2507
                  A F + FE   +P G T+   WD+
Sbjct: 1394 -----DAVFDETFE---LPNGSTSNG-WDS 1414