BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00017268
         (1060 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr...   239   1e-60
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...   231   4e-58
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...   229   1e-57
emb|CBI40152.3| unnamed protein product [Vitis vinifera]              228   4e-57
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   228   4e-57
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub...   223   8e-56
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun...   220   9e-55
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   218   3e-54
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   216   2e-53
ref|XP_007133762.1| hypothetical protein PHAVU_011G206900g [Phas...   203   1e-49
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put...   202   1e-49
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub...   202   2e-49
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub...   201   6e-49
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub...   192   2e-46
ref|XP_003627850.1| Protein DCL [Medicago truncatula] gi|3555218...   191   4e-46
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag...   191   4e-46
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no...   184   7e-44
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...   182   2e-43
emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]   180   1e-42
gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus...   174   7e-41

>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
            gi|557522591|gb|ESR33958.1| hypothetical protein
            CICLE_v10004129mg [Citrus clementina]
          Length = 1867

 Score =  239 bits (610), Expect = 1e-60
 Identities = 150/344 (43%), Positives = 193/344 (56%), Gaps = 23/344 (6%)
 Frame = +3

Query: 72   SQGWEAPKKSGGWISNKPETSHDWNSPKTDELNK--SVVQSPKA--GGWATPKTGGWNXX 239
            S G    +++ GW     +T   WN+   D+L+   S V++  +  G      T GW   
Sbjct: 1536 SWGRNGSEENSGW-----DTKASWNTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDS 1590

Query: 240  XXXXXXXXXXXXXXXQKAGGWTENVSTELTQQEPSQGWNTPTTGAKS---SQWS---HQE 401
                            + GGW  NV       + S G    T  AK    S W    H E
Sbjct: 1591 SKPSANEKSIV----HQIGGW--NVPDAKGTDDSSWGKQKLTENAKGTDDSSWGKQKHTE 1644

Query: 402  SGTSQPKASQGWDSPIDGGGGSESQ---WGPPRGG-FRKNR---RDGGEWKNKNFRPPNS 560
            + +SQP +S  WD P D  GGSE++   WG  R   F+KNR      GEWK K  RPP S
Sbjct: 1645 NESSQPASSNAWDLP-DATGGSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRS 1703

Query: 561  PGTFGD---VPAFFTATRQRIDMFTSDEQDIIKDVDPIVTPIKRIMR--GYNDGVRLSAE 725
            PG   D   V A +T TRQR+DMFTS+EQDI+ DV+PI+  I+RIM   GYNDG RLSA+
Sbjct: 1704 PGVVNDDSTVNAMYTVTRQRLDMFTSEEQDILSDVEPIMRSIRRIMHQSGYNDGDRLSAD 1763

Query: 726  DQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYVVSSDGREEDFSYVKCIK 905
            D++FI DNV NYHPDKA K G GID+ KV+ H   +DSRCL+VVS+DG ++DFSY KC++
Sbjct: 1764 DKSFIFDNVFNYHPDKAMKMGAGIDHFKVDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLE 1823

Query: 906  NFVMEKYPELAESFSLKYFRKPEQ-RNRERSLSVAPETPRERSV 1034
            +F+  KYPE  + F  KYFR+P    NRE SL   P  P E++V
Sbjct: 1824 SFIRGKYPEFVDEFIGKYFRRPRSGGNREPSL---PPVPEEKTV 1864


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score =  231 bits (589), Expect = 4e-58
 Identities = 149/361 (41%), Positives = 191/361 (52%), Gaps = 33/361 (9%)
 Frame = +3

Query: 51   EFTEPGTSQGWEAPKK----SGGWISNKPETSHDWNSP---------KTDELNKSVVQSP 191
            E  + G S  W   K     +  W  N  E +  W++          K D++  +V  S 
Sbjct: 1512 EAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSS 1571

Query: 192  KAGGWATP-KTGGWNXXXXXXXXXXXXXXXXXQKAGGWTENVSTELTQQEPSQGWNTPTT 368
               G      T GW                   + GGW  NV       +   G    T 
Sbjct: 1572 SVWGAREDFSTKGWEDSSKPSANEKSIV----HQIGGW--NVPDAKGTDDSCWGKQKLTE 1625

Query: 369  GAKS---SQWS---HQESGTSQPKASQGWDSPIDGGGGSESQ---WGPPRGG-FRKNR-- 512
             AK    S W    H E+ + QP +S  WD P D  GGSE++   WG  R   F+KNR  
Sbjct: 1626 NAKGTDDSSWGKQKHTENESPQPASSNAWDLP-DATGGSETEMQVWGQSRKEPFKKNRGW 1684

Query: 513  -RDGGEWKNKNFRPPNSPGTFGD---VPAFFTATRQRIDMFTSDEQDIIKDVDPIVTPIK 680
                GEWK K  RPP SPG   D   V A +T TRQR+DMFTS+EQDI+  V+PI+  I+
Sbjct: 1685 ASSSGEWKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLDMFTSEEQDILSHVEPIMRSIR 1744

Query: 681  RIMR--GYNDGVRLSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYV 854
            RIM   GYNDG RLSA+D++FI DNV NYHPDKA K G GID+ KV+ H   +DSRCL+V
Sbjct: 1745 RIMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGIDHFKVDKHGSFQDSRCLFV 1804

Query: 855  VSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQ-RNRERSLSVAPETPRERS 1031
            VS+DG ++DFSY KC+++F+  KYP+L + F  KYFR+P    NRE SL   P  P E++
Sbjct: 1805 VSTDGSQQDFSYRKCLESFIRGKYPDLVDEFIGKYFRRPRSGGNREPSL---PPVPEEKT 1861

Query: 1032 V 1034
            V
Sbjct: 1862 V 1862


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score =  229 bits (584), Expect = 1e-57
 Identities = 131/332 (39%), Positives = 182/332 (54%), Gaps = 21/332 (6%)
 Frame = +3

Query: 93   KKSGGW----ISNKPETSHDWNSPKTDELNKSVVQSPKAGG----WATPKTGGWNXXXXX 248
            K+SGGW     SN+ +T+  W  PK+ E ++    S ++G     W  P + G N     
Sbjct: 1595 KESGGWGNKVTSNQADTASGWGKPKSSENSQGWGLSKESGKEVHEWGVPNSAGGNGSETN 1654

Query: 249  XXXXXXXXXXXXQKAGGWTENVSTELTQQEPSQGWNTPTTGAKSSQWSHQESGTSQPKAS 428
                         K  GW    S+   Q+  + GW  P + A S  W    S     KA 
Sbjct: 1655 NNNENQSLVEQG-KESGWDNKASSN--QEGTASGWGKPKSPALSEGWG---SPREPVKAV 1708

Query: 429  QGWDSPIDGGG---GSESQWGPPRGGFRKNRRDG--------GEWKNKNFRPPNSPGTFG 575
             GW  P  GGG   G + QWG     F+K+R +G        G+WKNK  RP + P    
Sbjct: 1709 HGWGVPNSGGGNGSGRDQQWGQQSREFKKDRFEGSRGWGSNNGDWKNKRNRP-SKPHEDL 1767

Query: 576  DVPAFFTATRQRIDMFTSDEQDIIKDVDPIVTPIKRIMR--GYNDGVRLSAEDQAFIVDN 749
            +    FT TRQR+D+FTS EQDI+ D++P++  I+RIM   GYNDG  LSA+DQ++++DN
Sbjct: 1768 NASGIFTTTRQRLDVFTSQEQDILSDIEPLMLSIRRIMHQTGYNDGDPLSADDQSYVLDN 1827

Query: 750  VLNYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYVVSSDGREEDFSYVKCIKNFVMEKYP 929
            V +YHPDKA K G GID++ V+ H   ++SRC Y+VS+DG ++DFSY KC++NF+  KYP
Sbjct: 1828 VFHYHPDKAVKMGAGIDHVTVSRHSNFQESRCFYIVSTDGCKQDFSYRKCLENFIKGKYP 1887

Query: 930  ELAESFSLKYFRKPEQRNRERSLSVAPETPRE 1025
            +LA+ F  KYF +   R R    + APE   E
Sbjct: 1888 DLADEFIAKYFARRGNRQR----TPAPEGTEE 1915


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  228 bits (580), Expect = 4e-57
 Identities = 148/372 (39%), Positives = 190/372 (51%), Gaps = 52/372 (13%)
 Frame = +3

Query: 84   EAPKKSGGWISNKPE-------TSHDWNSPKTDELNKSVVQSPK---------------- 194
            E+P     W +N PE       TS  W+S    +  K  +QSP                 
Sbjct: 1541 ESPVNEHSWDANLPEDPLAQATTSVGWDSSTGKDWTKRKLQSPSEQQRDPAIKSWSSSHN 1600

Query: 195  -----------AGGWATPKTGGWNXXXXXXXXXXXXXXXXXQKAGGWTENVST-ELTQQE 338
                         GW +P   GWN                 ++   W +  S  +  Q E
Sbjct: 1601 VMKEQSNQPASTHGWDSPGAKGWNDV---------------EEQSQWNQRGSAVKNDQSE 1645

Query: 339  PSQGWNTPTTGAKSSQWSHQESGTSQPKASQGWDSPIDGGGG---SESQWGPPRGGFRKN 509
             S GW     G  + Q        +Q  +SQGW SP  G G    ++SQWG P G  +K+
Sbjct: 1646 SSHGW-----GPSNEQ--------NQLPSSQGWGSPNAGAGHESETQSQWGQPSG--KKS 1690

Query: 510  RRDGG--------EWKNKNFRPPNSPGTFGD---VPAFFTATRQRIDMFTSDEQDIIKDV 656
            R +G         EWKNK  RP    G   D       FTATRQR+D+FTS+EQDI+ DV
Sbjct: 1691 RPEGSRGWGSNNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDV 1750

Query: 657  DPIVTPIKRIMR--GYNDGVRLSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFH 830
            +PI+  I+RIM   GYNDG  LSA+DQ++I+D V N HPDKA K GTGIDY+ V+ H   
Sbjct: 1751 EPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSF 1810

Query: 831  KDSRCLYVVSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQ-RNRERSLSVA 1007
             +SRC YVVS+DG +EDFSY KC++NF+ EKYP+ AE+F  KYFR+P    NRERS+   
Sbjct: 1811 LESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRRPRAGGNRERSVIPE 1870

Query: 1008 PETPRERSVGPE 1043
                RE+SV PE
Sbjct: 1871 DGGNREQSVVPE 1882


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  228 bits (580), Expect = 4e-57
 Identities = 148/372 (39%), Positives = 190/372 (51%), Gaps = 52/372 (13%)
 Frame = +3

Query: 84   EAPKKSGGWISNKPE-------TSHDWNSPKTDELNKSVVQSPK---------------- 194
            E+P     W +N PE       TS  W+S    +  K  +QSP                 
Sbjct: 1481 ESPVNEHSWDANLPEDPLAQATTSVGWDSSTGKDWTKRKLQSPSEQQRDPAIKSWSSSHN 1540

Query: 195  -----------AGGWATPKTGGWNXXXXXXXXXXXXXXXXXQKAGGWTENVST-ELTQQE 338
                         GW +P   GWN                 ++   W +  S  +  Q E
Sbjct: 1541 VMKEQSNQPASTHGWDSPGAKGWNDV---------------EEQSQWNQRGSAVKNDQSE 1585

Query: 339  PSQGWNTPTTGAKSSQWSHQESGTSQPKASQGWDSPIDGGGG---SESQWGPPRGGFRKN 509
             S GW     G  + Q        +Q  +SQGW SP  G G    ++SQWG P G  +K+
Sbjct: 1586 SSHGW-----GPSNEQ--------NQLPSSQGWGSPNAGAGHESETQSQWGQPSG--KKS 1630

Query: 510  RRDGG--------EWKNKNFRPPNSPGTFGD---VPAFFTATRQRIDMFTSDEQDIIKDV 656
            R +G         EWKNK  RP    G   D       FTATRQR+D+FTS+EQDI+ DV
Sbjct: 1631 RPEGSRGWGSNNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDV 1690

Query: 657  DPIVTPIKRIMR--GYNDGVRLSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFH 830
            +PI+  I+RIM   GYNDG  LSA+DQ++I+D V N HPDKA K GTGIDY+ V+ H   
Sbjct: 1691 EPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSF 1750

Query: 831  KDSRCLYVVSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQ-RNRERSLSVA 1007
             +SRC YVVS+DG +EDFSY KC++NF+ EKYP+ AE+F  KYFR+P    NRERS+   
Sbjct: 1751 LESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRRPRAGGNRERSVIPE 1810

Query: 1008 PETPRERSVGPE 1043
                RE+SV PE
Sbjct: 1811 DGGNREQSVVPE 1822


>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1991

 Score =  223 bits (569), Expect = 8e-56
 Identities = 138/365 (37%), Positives = 190/365 (52%), Gaps = 38/365 (10%)
 Frame = +3

Query: 66   GTSQGWEAPKKSGGWISNKPE-TSHDWNSPKTDELNKSVVQSPKA-----GGWATPKT-- 221
            G+  G +  +K G     + E T H W     D  ++   +  K+     G W  PK+  
Sbjct: 1632 GSGWGMKGSEKKGDIELEQDESTRHSWKQKSADASSQGAWERQKSPDTSKGTWEQPKSAE 1691

Query: 222  ---GGWNXXXXXXXXXXXXXXXXXQKA---GGWTENVSTELTQ----QEPSQGWNTPTTG 371
               G W                        G W +  S E+ Q    Q+ S   +  T G
Sbjct: 1692 MSHGAWGQQKSPDVSQGVWGLEKPASTNSQGSWGQQKSPEIPQGNWGQQTSPDISQGTWG 1751

Query: 372  AKSS------QWSHQE-SGTSQPKASQGWDSPIDGGGGSESQWGPPRGGFRKNRRDGG-- 524
             + S       W  Q+ S TSQP     WDS  +       QWG      ++ R +GG  
Sbjct: 1752 QQKSPEMSQGSWGQQKPSDTSQPATVNQWDSQSEAAVERHQQWGHNGDSNKRKRFEGGRS 1811

Query: 525  ------EWKNKNFRPPNSPGTFGD---VPAFFTATRQRIDMFTSDEQDIIKDVDPIVTPI 677
                  EWK KN RP  SPG   D   V A +TATRQR+D+FTS+EQD++  ++P +  I
Sbjct: 1812 WGPNAGEWKGKNSRPAKSPGMVNDDSSVAAIYTATRQRLDIFTSEEQDVLSHIEPTMLSI 1871

Query: 678  KRIMR--GYNDGVRLSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFHKDSRCLY 851
            +RIM   GYNDG +LSAED +FI+D V N+HP+K +K G+GIDY  V+ H   ++SRCL+
Sbjct: 1872 RRIMHQSGYNDGDQLSAEDHSFILDKVFNFHPEKEAKMGSGIDYFTVDRHGSFQESRCLF 1931

Query: 852  VVSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQRNRERSLSVAPETPRERS 1031
            V+S+DGR+EDFSY KC++N + EKYPELAE+F+ KYF +P  RN      +  +TP ER+
Sbjct: 1932 VISTDGRKEDFSYRKCLQNMIKEKYPELAEAFNDKYFSRPRPRN-----PMFGQTPPERT 1986

Query: 1032 VGPET 1046
             G ET
Sbjct: 1987 -GNET 1990


>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
            gi|462415343|gb|EMJ20080.1| hypothetical protein
            PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score =  220 bits (560), Expect = 9e-55
 Identities = 121/265 (45%), Positives = 161/265 (60%), Gaps = 28/265 (10%)
 Frame = +3

Query: 300  WTENVSTELTQQEPSQGWNTPTTGAKSSQWSHQESGTSQPKASQ------------GWDS 443
            W +N + E T    +  W T T  A  + W  +E+G  +P   Q            GWDS
Sbjct: 1581 WGKNPAKENT----TSTWGTTT--ASENDWCGREAGKVEPVDLQPTKPQDDSASLSGWDS 1634

Query: 444  PIDGGGGSES--QWGPPRGG-FRKNRRDG--------GEWKNKNFRPPNSPGTFGD---V 581
            P   G   E   QWG  RG   +KNR +G        GEWKNKN RPP SPG   D   +
Sbjct: 1635 PTGDGNSGERNHQWGQHRGDQTKKNRFEGARNWVSSPGEWKNKN-RPPKSPGMVNDNSTM 1693

Query: 582  PAFFTATRQRIDMFTSDEQDIIKDVDPIVTPIKRIMR--GYNDGVRLSAEDQAFIVDNVL 755
             A +T TRQR+DMFTS+EQD++ +++P++  ++RIM   GYNDG  LS +DQ+F++DNV 
Sbjct: 1694 GALYTVTRQRLDMFTSEEQDVLSNIEPVMRSLRRIMHQSGYNDGDPLSGDDQSFVLDNVF 1753

Query: 756  NYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYVVSSDGREEDFSYVKCIKNFVMEKYPEL 935
            NYHPDKA+K G GID++ VN H   +DSRC +VVS+DGR EDFSY KC+ N++ EK+P+L
Sbjct: 1754 NYHPDKAAKMGCGIDHLTVNRHGSFQDSRCFFVVSTDGRTEDFSYRKCLDNYIREKFPDL 1813

Query: 936  AESFSLKYFRKPEQRNRERSLSVAP 1010
            AE+F  KYF +   R R  +L   P
Sbjct: 1814 AETFIGKYFSRRGNRERNPTLIQTP 1838


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  218 bits (556), Expect = 3e-54
 Identities = 137/350 (39%), Positives = 193/350 (55%), Gaps = 16/350 (4%)
 Frame = +3

Query: 42   NQIEFTEPGTSQGWEA---PKKSG---GWISNKPETSHDWNSPKTDELNKSV-VQSPKAG 200
            +QIE  E G+  G++     +KS    GW S + +T   W+  K+ E ++S   Q+   G
Sbjct: 1633 SQIESNE-GSDHGFDQVTNEQKSSDTRGWDSQE-KTDKPWDKQKSLEASQSWGSQNDSLG 1690

Query: 201  GWATPKTGGWNXXXXXXXXXXXXXXXXXQKAGGWTENVSTELTQQEP---SQGWNTPTTG 371
             W  P+                             ++ ST+ +Q +P   S GW    + 
Sbjct: 1691 SWGQPQRASEECSRESQ------------------DDSSTQFSQLKPPETSLGWEQQKSP 1732

Query: 372  AKSSQW-SHQESGTSQPKASQGWDSPIDGGGGSESQWGPPRGGFRKNRRDGGEWKNKNFR 548
              S  W SH+ES  S+  +S GWD    G  G    WG           + GEWKN+  R
Sbjct: 1733 EVSHGWGSHKES--SEQTSSHGWDKKNQGSKG----WGG----------NAGEWKNRKNR 1776

Query: 549  PPNSPGTFGD---VPAFFTATRQRIDMFTSDEQDIIKDVDPIVTPIKRIMR--GYNDGVR 713
            PP SPG   D   + A +TA+ QR+DMFTS+EQDI+ D++PI+  I+++M   GYNDG  
Sbjct: 1777 PPKSPGMSNDDANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDP 1836

Query: 714  LSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYVVSSDGREEDFSYV 893
            LSAEDQ+F++ +V N+HPDKA+K G GID+  V+ H   ++SRC YVV++DG +EDFSY 
Sbjct: 1837 LSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYR 1896

Query: 894  KCIKNFVMEKYPELAESFSLKYFRKPEQRNRERSLSVAPETPRERSVGPE 1043
            KC+ NF+  KYP+LAE F  KYFRKP + NR R  + A E    +S+G E
Sbjct: 1897 KCLDNFIKGKYPDLAEMFVAKYFRKP-RPNRNRDRNPASEENENKSIGGE 1945


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  216 bits (549), Expect = 2e-53
 Identities = 136/350 (38%), Positives = 193/350 (55%), Gaps = 16/350 (4%)
 Frame = +3

Query: 42   NQIEFTEPGTSQGWEA---PKKSG---GWISNKPETSHDWNSPKTDELNKSV-VQSPKAG 200
            +QIE  E G+  G++     +KS    GW S + +T   W+  K+ E ++S   Q+   G
Sbjct: 1693 SQIESNE-GSDHGFDQVTNEQKSSDTRGWDSQE-KTDKPWDKQKSLEASQSWGSQNDSLG 1750

Query: 201  GWATPKTGGWNXXXXXXXXXXXXXXXXXQKAGGWTENVSTELTQQEP---SQGWNTPTTG 371
             W  P+                             ++ ST+ +Q +P   S GW    + 
Sbjct: 1751 SWGQPQRASEECSRESQ------------------DDSSTQFSQLKPPETSLGWEQQKSP 1792

Query: 372  AKSSQW-SHQESGTSQPKASQGWDSPIDGGGGSESQWGPPRGGFRKNRRDGGEWKNKNFR 548
              S  W S++ES  S+  +S GWD    G  G    WG           + GEWKN+  R
Sbjct: 1793 EVSHGWGSNKES--SEQTSSHGWDKKNQGSKG----WGG----------NAGEWKNRKNR 1836

Query: 549  PPNSPGTFGD---VPAFFTATRQRIDMFTSDEQDIIKDVDPIVTPIKRIMR--GYNDGVR 713
            PP SPG   D   + A +TA+ QR+DMFTS+EQDI+ D++PI+  I+++M   GYNDG  
Sbjct: 1837 PPKSPGMSNDDANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDP 1896

Query: 714  LSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYVVSSDGREEDFSYV 893
            LSAEDQ+F++ +V N+HPDKA+K G GID+  V+ H   ++SRC YVV++DG +EDFSY 
Sbjct: 1897 LSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYR 1956

Query: 894  KCIKNFVMEKYPELAESFSLKYFRKPEQRNRERSLSVAPETPRERSVGPE 1043
            KC+ NF+  KYP+LAE F  KYFRKP + NR R  + A E    +S+G E
Sbjct: 1957 KCLDNFIKGKYPDLAEMFVAKYFRKP-RPNRNRDRNPASEENENKSIGGE 2005


>ref|XP_007133762.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
            gi|561006762|gb|ESW05756.1| hypothetical protein
            PHAVU_011G206900g [Phaseolus vulgaris]
          Length = 2052

 Score =  203 bits (516), Expect = 1e-49
 Identities = 132/360 (36%), Positives = 180/360 (50%), Gaps = 36/360 (10%)
 Frame = +3

Query: 69   TSQGWEAPKKSGGWISNKPET---------SHDWNSPKTDELNKSVVQSPKAGG--WATP 215
            TS  W       GW  NK E             W S K   L   V Q   +G   W   
Sbjct: 1710 TSNEW------AGWGRNKSEIPAGGCETVQEDSWGSGK---LKDDVTQKDNSGSGAWGAN 1760

Query: 216  KTGGWNXXXXXXXXXXXXXXXXXQKAGGWTENVSTEL-----TQQEPSQG---WNTPTTG 371
            KTG                    + A G +E +  +       + E   G   W  P + 
Sbjct: 1761 KTG------LTKTEVDEWARNKVETADGGSEKLQEDSWNSGNLKSESKVGNASWGKPNSS 1814

Query: 372  AKSSQWSHQESGTSQPKASQGWDSPIDGGGGSES---QWGPP-RGGFRKNRRDG------ 521
               S  SH +S  +Q  +S+GW+S I           QWG   R  F+KNR +G      
Sbjct: 1815 GSQSWDSHNQS--NQNSSSRGWESHIASANSDSEKGFQWGKQGRESFKKNRFEGSQGRGS 1872

Query: 522  --GEWKNKNFRPPNSPGTFGDVPAFFTATRQRIDMFTSDEQDIIKDVDPIVTPIKRIMR- 692
              G+WKN+N RPP +PG             QR+D+++S+EQD++K+++PI+  I+RIM+ 
Sbjct: 1873 NSGDWKNRN-RPPRTPG-------------QRLDLYSSEEQDVLKEIEPIMQSIRRIMQQ 1918

Query: 693  -GYNDGVRLSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYVVSSDG 869
             GYNDG  L+A+DQ F+++NV  +HPDK +K G GIDY+ VN H   +DSRC YVV  DG
Sbjct: 1919 QGYNDGDPLAADDQLFVLENVFEHHPDKDTKMGAGIDYVMVNKHSSFQDSRCFYVVLKDG 1978

Query: 870  REEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQRNRERSLSVAPET---PRERSVGP 1040
            R EDFSY KC+ N++ +KYPELAESF  KYFRKP  R  + +     +T   PR+ +  P
Sbjct: 1979 RREDFSYRKCLDNWIRKKYPELAESFFGKYFRKPRNRAEQTATPRGDQTAMPPRDEAATP 2038


>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
            [Theobroma cacao] gi|590569189|ref|XP_007011000.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao]
          Length = 1788

 Score =  202 bits (515), Expect = 1e-49
 Identities = 131/329 (39%), Positives = 176/329 (53%), Gaps = 13/329 (3%)
 Frame = +3

Query: 66   GTSQGWEAPKKSGGWISNKPETSHDWNSPKTDELNKSVVQSPKAGGWATPKTGGWNXXXX 245
            G S+  +   K  G   N+     DW   K D  + S+ +       A   T  W     
Sbjct: 1465 GKSKTQDVSPKVDGTCVNEQTKLSDWGLKKNDTQDVSMEEKTFKSNGADTGTS-WGTMGK 1523

Query: 246  XXXXXXXXXXXXXQKAGGW-TENV--STELTQQEPSQGWNTPTTGAKSSQWSHQESGTSQ 416
                             GW T++V  +  L     S GW    +   S  W   +  ++Q
Sbjct: 1524 ESEKPDANDALPWS---GWGTQDVIPTKTLDDSSKSSGWEQQKSPECSQGWGSLDE-SNQ 1579

Query: 417  PKASQGWDSPIDGGGGSES----QWGPPRGGFRKNRRDGGEWKNKNFRPPNSPGTFGD-- 578
            P +S GWD+P +G G ++S    QWG  RG    +RR   +   KN  P  S     D  
Sbjct: 1580 PASSNGWDTP-NGLGSTQSEKQHQWGQSRG----SRRWASDASKKN-HPVKSARVMNDDS 1633

Query: 579  -VPAFFTATRQRIDMFTSDEQDIIKDVDPIVTPIKRIMR--GYNDGVRLSAEDQAFIVDN 749
             + A +TATRQR+DMFTS+EQDI+ DV+P++  I++IM   GYNDG  LSA DQ+FI++N
Sbjct: 1634 SMAAMYTATRQRLDMFTSEEQDILSDVEPLMQSIRKIMHQSGYNDGDPLSALDQSFILEN 1693

Query: 750  VLNYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYVVSSDGREEDFSYVKCIKNFVMEKYP 929
            V  +HPDKA K G G+DY+ V+ H    DSRC YVVS+DGR++DFSY KC+ NF+  KYP
Sbjct: 1694 VFTHHPDKAIKMGAGVDYVMVSKHSNFPDSRCFYVVSTDGRKQDFSYRKCLDNFIKGKYP 1753

Query: 930  ELAESFSLKYFRKPEQRN-RERSLSVAPE 1013
            ++A+ F  KYFRKP     RER  SVAPE
Sbjct: 1754 DMADVFIAKYFRKPRFGGFRER--SVAPE 1780


>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2082

 Score =  202 bits (514), Expect = 2e-49
 Identities = 129/348 (37%), Positives = 183/348 (52%), Gaps = 34/348 (9%)
 Frame = +3

Query: 99   SGGWISNKPET----SHDWNSPKTDELNKSVVQSPKAGGWATPKTGGWNXXXXXXXXXXX 266
            SGGW +N+ +     S +W+S      NKS +    AGG    +   W            
Sbjct: 1736 SGGWGANRTDLAKSKSSEWSSWGK---NKSEIP---AGGSENVQNDSWGSGKLEDDTQKE 1789

Query: 267  XXXXXXQKAGGWTENVSTELTQQEP-------------SQGWNTPTTGAKSSQWSHQESG 407
                   +    T +  +E  Q++              +  W  P +    +  SH +S 
Sbjct: 1790 NSGSAWVRNKAETIDGGSEKPQEDAWNSGNWKAESKVGNASWGKPKSSESQAWDSHNQS- 1848

Query: 408  TSQPKASQGWDSPIDGGGGSES----QWGPP-RGGFRKNRRDG--------GEWKNKNFR 548
             +Q  +SQGW+S I     SES    QWG   R  F+KNR +G        G+WKN+N R
Sbjct: 1849 -NQNSSSQGWESHI-ASANSESEKGFQWGKQGRDSFKKNRFEGSQGRGSNAGDWKNRN-R 1905

Query: 549  PPNSPGTFGDVPAFFTATRQRIDMFTSDEQDIIKDVDPIVTPIKRIMR--GYNDGVRLSA 722
            PP +PG             QR+D+++S EQD++KD++PI+  I+RIM+  GYNDG  L+A
Sbjct: 1906 PPRAPG-------------QRLDIYSSGEQDVLKDIEPIMQSIRRIMQQQGYNDGDPLAA 1952

Query: 723  EDQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYVVSSDGREEDFSYVKCI 902
            EDQ F+++NV  +HPDK +K GTGIDY+ VN H   ++SRC YVV  DG  +DFSY KC+
Sbjct: 1953 EDQLFVLENVFEHHPDKETKMGTGIDYVMVNKHSSFQESRCFYVVCKDGESKDFSYRKCL 2012

Query: 903  KNFVMEKYPELAESFSLKYFRKPEQRNRERSLSVAPE--TPRERSVGP 1040
             N++ +KYP+LAESF  KYFRKP  R  + +     E  TP E++  P
Sbjct: 2013 ANYISKKYPDLAESFLGKYFRKPRARGDQTATPGRDEAATPGEQTATP 2060


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2020

 Score =  201 bits (510), Expect = 6e-49
 Identities = 121/349 (34%), Positives = 174/349 (49%), Gaps = 42/349 (12%)
 Frame = +3

Query: 60   EPGTSQGWEAPKKSGGWISNKPETSHDWNSPKTD----------ELNKSVVQSPKAGGWA 209
            E      W + K+           S DW + +TD             K+  + P AGG A
Sbjct: 1662 EDNVQHSWGSGKRKDKVTQEDNSGSGDWGANRTDLAITKSSEWSSWGKNKTEIP-AGGSA 1720

Query: 210  TPKTGGWNXXXXXXXXXXXXXXXXXQKAGG--WTENVSTEL---TQQEPSQGWNTPTTGA 374
              +   W                   +  G  W  N +  +   +++     WN+    A
Sbjct: 1721 NVQNDSWGLGKLNDTQKDNSGCGAWGENSGSAWVRNKAETIDGGSEKPQEDAWNSGNWKA 1780

Query: 375  KS----SQWSHQESGTS----------QPKASQGWDSPIDGGGGSES---QWGPPRGGFR 503
            +S    + W   +S  S          Q  +SQGW+S I           QWG  R  F+
Sbjct: 1781 ESKVGNTTWGKPKSSESHAWDSHNQSNQNSSSQGWESHIASANSENEKGFQWGKGRDSFK 1840

Query: 504  KNRRDG--------GEWKNKNFRPPNSPGTFGDVPAFFTATRQRIDMFTSDEQDIIKDVD 659
            KNR +G        G+WKN+N RPP +PG             QR+D+++S+EQD++KD++
Sbjct: 1841 KNRFEGSQGRGSNAGDWKNRN-RPPRAPG-------------QRLDIYSSEEQDVLKDIE 1886

Query: 660  PIVTPIKRIMR--GYNDGVRLSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFHK 833
            PI+  I+RIM+  GY+DG  L+AEDQ F+++NV  +HPDK +K G GIDY+ VN H   +
Sbjct: 1887 PIMQSIRRIMQQQGYSDGDPLAAEDQLFVLENVFEHHPDKETKMGAGIDYVMVNKHSSFQ 1946

Query: 834  DSRCLYVVSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQR 980
            +SRC YVV  DG+ +DFSY KC+ N++ +KYP+LAESF  KYFRKP  R
Sbjct: 1947 ESRCFYVVCKDGQSKDFSYRKCLANYISKKYPDLAESFLGKYFRKPRAR 1995


>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
            arietinum]
          Length = 2263

 Score =  192 bits (488), Expect = 2e-46
 Identities = 126/365 (34%), Positives = 181/365 (49%), Gaps = 39/365 (10%)
 Frame = +3

Query: 72   SQGWEA-------PKKSGGWISNKPET---SHDWNS--PKTDELNKSVVQSPKAGGWATP 215
            SQ W+A         K G W + K  T   S+DW+S   K DE++    +  +   W++ 
Sbjct: 1882 SQKWKAGADVTQDSPKMGSWGATKDATKPKSNDWSSWGKKKDEIHDGGSEKIQEDSWSSG 1941

Query: 216  KTGGWNXXXXXXXXXXXXXXXXXQKAGGWTENVSTELTQQEPSQGWNTPTTGAKSSQWSH 395
            K    +                  K+  W      E    +    W+     A SS W  
Sbjct: 1942 KRKAESKSVADVMQEDS------SKSNTW------EHKSDDVKDSWDAKVPVANSS-WGK 1988

Query: 396  QESGTSQP----------KASQGWDSPIDGGGGSES---QWGPP-RGGFRKNRRDG---- 521
             +S  +QP           +S+GWDS +           QWG P R  F+KNR +G    
Sbjct: 1989 PKSQENQPWDSKNESNPTASSRGWDSQVASANSDSDKNFQWGKPGRESFKKNRFEGSQGS 2048

Query: 522  -------GEWKNKNFRPPNSPGTFGDVPAFFTATRQRIDMFTSDEQDIIKDVDPIVTPIK 680
                   G+WKNKN RP   PG              R+D+++S+EQDI+KD++PIV  I+
Sbjct: 2049 QGWGSNAGDWKNKN-RPARPPGP-------------RLDLYSSEEQDILKDIEPIVQSIR 2094

Query: 681  RIMR--GYNDGVRLSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYV 854
            RIM+  GYNDG  L+AEDQ ++++NV  +HPDK +K G GID++ V+ H   ++SRC YV
Sbjct: 2095 RIMQQQGYNDGDPLAAEDQQYVLENVFEHHPDKETKMGVGIDHVMVSRHSNFQESRCFYV 2154

Query: 855  VSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQRNRERSLSVAPETPRERSV 1034
            V  DG++EDFSY KC+++FV +KY + AESF  KYFRKP  +  + + S   +T      
Sbjct: 2155 VLKDGKKEDFSYRKCLESFVRKKYADTAESFCGKYFRKPRPKRDQIANSGGEQTANPGGE 2214

Query: 1035 GPETP 1049
               TP
Sbjct: 2215 QTATP 2219


>ref|XP_003627850.1| Protein DCL [Medicago truncatula] gi|355521872|gb|AET02326.1| Protein
            DCL [Medicago truncatula]
          Length = 481

 Score =  191 bits (485), Expect = 4e-46
 Identities = 120/353 (33%), Positives = 175/353 (49%), Gaps = 24/353 (6%)
 Frame = +3

Query: 72   SQGWEAPKKS--GGWISNKPETSHDWNSPKTDELNKSVVQSPKAGGWATPKTGGWNXXXX 245
            S  WE   ++    W++  P  +  W   K+ E      ++     +  P +        
Sbjct: 115  SNAWEQKPENVKDSWVAKVPVANSSWGKAKSPENRPWDSKNEPNNSFGKPNSQENEPWDS 174

Query: 246  XXXXXXXXXXXXXQKAGGWTENVSTELTQQEPSQGWNTPTTGAKSSQWSHQESGTSQPKA 425
                         Q++  W        ++ E +  W  P +       S  ES  +Q   
Sbjct: 175  KNESDSSWGKPKSQESQPWD-------SKNESNSSWGKPKSQENHPWDSKNES--NQTAG 225

Query: 426  SQGWDSPIDGGGGSES----QWGPP-RGGFRKNRRDG--------GEWKNKNFRPPNSPG 566
            S+GWDS +     SES    QWG   R  F+KNR +G        G+WKN++ RP   PG
Sbjct: 226  SRGWDSQV-ASANSESDKSFQWGKQGRDSFKKNRFEGSQSGGPNAGDWKNRS-RPVRPPG 283

Query: 567  TFGDVPAFFTATRQRIDMFTSDEQDIIKDVDPIVTPIKRIMR--GYNDGVRLSAEDQAFI 740
                         QR +++T +EQDI+KD++PIV  I+RIM+  GYNDG  L+ EDQ ++
Sbjct: 284  -------------QRFELYTPEEQDIMKDIEPIVQSIRRIMQLQGYNDGDPLANEDQKYV 330

Query: 741  VDNVLNYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYVVSSDGREEDFSYVKCIKNFVME 920
            ++NV  +HPDK +K G G+D++ V+ H   +DSRCLYVV  DG++EDFSY KC++N V +
Sbjct: 331  LENVFEHHPDKETKMGVGVDHVMVSKHSNFQDSRCLYVVLKDGKKEDFSYRKCLENLVRK 390

Query: 921  KYPELAESFSLKYFRKPEQR-------NRERSLSVAPETPRERSVGPETPRER 1058
            KYPE AESF  KYFRKP+ R       N     + AP    E++  P    E+
Sbjct: 391  KYPETAESFCGKYFRKPQPRVKRDQTPNPAGEQTAAPNPAGEQTAAPNPAGEQ 443


>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
            gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
            subunit [Medicago truncatula]
          Length = 2032

 Score =  191 bits (485), Expect = 4e-46
 Identities = 120/353 (33%), Positives = 175/353 (49%), Gaps = 24/353 (6%)
 Frame = +3

Query: 72   SQGWEAPKKS--GGWISNKPETSHDWNSPKTDELNKSVVQSPKAGGWATPKTGGWNXXXX 245
            S  WE   ++    W++  P  +  W   K+ E      ++     +  P +        
Sbjct: 1666 SNAWEQKPENVKDSWVAKVPVANSSWGKAKSPENRPWDSKNEPNNSFGKPNSQENEPWDS 1725

Query: 246  XXXXXXXXXXXXXQKAGGWTENVSTELTQQEPSQGWNTPTTGAKSSQWSHQESGTSQPKA 425
                         Q++  W        ++ E +  W  P +       S  ES  +Q   
Sbjct: 1726 KNESDSSWGKPKSQESQPWD-------SKNESNSSWGKPKSQENHPWDSKNES--NQTAG 1776

Query: 426  SQGWDSPIDGGGGSES----QWGPP-RGGFRKNRRDG--------GEWKNKNFRPPNSPG 566
            S+GWDS +     SES    QWG   R  F+KNR +G        G+WKN++ RP   PG
Sbjct: 1777 SRGWDSQV-ASANSESDKSFQWGKQGRDSFKKNRFEGSQSGGPNAGDWKNRS-RPVRPPG 1834

Query: 567  TFGDVPAFFTATRQRIDMFTSDEQDIIKDVDPIVTPIKRIMR--GYNDGVRLSAEDQAFI 740
                         QR +++T +EQDI+KD++PIV  I+RIM+  GYNDG  L+ EDQ ++
Sbjct: 1835 -------------QRFELYTPEEQDIMKDIEPIVQSIRRIMQLQGYNDGDPLANEDQKYV 1881

Query: 741  VDNVLNYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYVVSSDGREEDFSYVKCIKNFVME 920
            ++NV  +HPDK +K G G+D++ V+ H   +DSRCLYVV  DG++EDFSY KC++N V +
Sbjct: 1882 LENVFEHHPDKETKMGVGVDHVMVSKHSNFQDSRCLYVVLKDGKKEDFSYRKCLENLVRK 1941

Query: 921  KYPELAESFSLKYFRKPEQR-------NRERSLSVAPETPRERSVGPETPRER 1058
            KYPE AESF  KYFRKP+ R       N     + AP    E++  P    E+
Sbjct: 1942 KYPETAESFCGKYFRKPQPRVKRDQTPNPAGEQTAAPNPAGEQTAAPNPAGEQ 1994


>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
          Length = 2054

 Score =  184 bits (466), Expect = 7e-44
 Identities = 103/268 (38%), Positives = 151/268 (56%), Gaps = 19/268 (7%)
 Frame = +3

Query: 297  GWTENVSTELTQQEPSQG------WNTPTTGAKSSQWSHQESGTSQPKASQGWDSPIDGG 458
            GWT++ ++   ++EP+        W   T+   S         +  P+A  G      G 
Sbjct: 1776 GWTKDANSS-ERKEPTDSPVVYNSWEKRTSSEISQNVESASFNSWLPRAGDG------GE 1828

Query: 459  GGSESQWGPPRGGFRKNR--------RDGGEWKNKNFRPPNSPGTFGDVPA--FFTATRQ 608
                ++W    G F+KN          D G+WK K   P   P    D  +   FT TRQ
Sbjct: 1829 VEKPNEWVKKSGSFKKNHGETSGGWGSDSGDWKIKKNHPGKFPRMNNDNTSVRLFTETRQ 1888

Query: 609  RIDMFTSDEQDIIKDVDPIVTPIKRIMR--GYNDGVRLSAEDQAFIVDNVLNYHPDKASK 782
            R+D+FTS+EQD +  ++P +  I+RIM   GYNDG  +  EDQ+FI+DNV NYHPDKA+K
Sbjct: 1889 RLDLFTSEEQDALSLIEPTMKSIRRIMHKSGYNDGDPIRPEDQSFIIDNVFNYHPDKAAK 1948

Query: 783  SGTGIDYIKVNTHEFHKDSRCLYVVSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYF 962
             G+GID++ ++ H   +DSRCLYVVS+DGR+EDFSY KC+ N +  ++P++A+ F  KYF
Sbjct: 1949 MGSGIDHLMISRHSSFQDSRCLYVVSTDGRKEDFSYRKCLGNLIKSRFPDVADEFLDKYF 2008

Query: 963  RKPEQ-RNRERSLSVAPETPRERSVGPE 1043
            RKP+   N++R  +  P     ++  PE
Sbjct: 2009 RKPKPGGNQDRISTPEPAWNNTQAPTPE 2036


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score =  182 bits (462), Expect = 2e-43
 Identities = 122/402 (30%), Positives = 183/402 (45%), Gaps = 70/402 (17%)
 Frame = +3

Query: 54   FTEPGTSQGWEAPKKSGGWISNKPETSHD-WNSPKTDELNKSVVQSPKAGGWATPK---- 218
            F   G  + W++ KK     S+  +     W   K    +     S  +GGW+T K    
Sbjct: 1497 FNRQGAGKSWDSKKKESNVQSSWAQQGDSTWKDSKEARSSVKANNSTNSGGWSTGKALVD 1556

Query: 219  --TGGWNXXXXXXXXXXXXXXXXXQKAGGWTENVSTE--------LTQQEPSQGWNTPTT 368
              +  W                     G + ++   E          +++    W  P+ 
Sbjct: 1557 GVSSSWGSQKEDRPQPKSNDRSVGD--GNFDKDAKEEGLSSWDAKKVERKTQSSWGQPSE 1614

Query: 369  GAKSSQWSHQESGT---SQPKASQGWDSP-----------------------------ID 452
               S+Q S    G+   +QP  S GW S                              + 
Sbjct: 1615 SKNSAQSSADHWGSDKSNQPGKSSGWGSEDTNAGKDSEKQDSWGKSNVSTWKKESGEKLH 1674

Query: 453  GGGGSESQWGPPRG-GFRKNRRDGG---------EWKNKNF----------RPPNSPGTF 572
            G   S+S WG P G G+ K + +GG         EWK++            RPP  P   
Sbjct: 1675 GSDDSQSPWGQPGGSGWNKKQPEGGRGWGSSNTGEWKSRKNQNQNQNQNQNRPPRGPND- 1733

Query: 573  GDVPAF-FTATRQRIDMFTSDEQDIIKDVDPIVTPIKRIMR--GYNDGVRLSAEDQAFIV 743
             D P    TATR+R+D F ++E+D++ +V+ ++  I+RIM   G  DG  L  +DQ +++
Sbjct: 1734 -DSPRVALTATRKRMDEFPTEEKDVLSEVESLMQSIRRIMHQSGCVDGEPLLPDDQTYLI 1792

Query: 744  DNVLNYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYVVSSDGREEDFSYVKCIKNFVMEK 923
            DN+LNYHPDKA+K G G+D+I V  H   ++SRC YVVS+DG++ DFSY+KCI+ FV  K
Sbjct: 1793 DNILNYHPDKAAKIGAGVDFITVKKHSNFQESRCFYVVSTDGKDTDFSYIKCIETFVKGK 1852

Query: 924  YPELAESFSLKYFRKPEQRNRERSLSVAPETPRERSVGPETP 1049
            YP +AESF+ KYFR+ +   R +  S +P +P   S  P +P
Sbjct: 1853 YPSVAESFTSKYFRRSQ---RPQPASPSPASPSPTSPSPASP 1891


>emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]
          Length = 1081

 Score =  180 bits (456), Expect = 1e-42
 Identities = 140/431 (32%), Positives = 184/431 (42%), Gaps = 111/431 (25%)
 Frame = +3

Query: 84   EAPKKSGGWISNKPE-------TSHDWNSPKTDELNKSVVQSPK---------------- 194
            E+P     W +N PE       TS  W+S    +  K  +QSP                 
Sbjct: 673  ESPVNEHSWDANLPEDPLAQATTSVGWDSSTGKDWTKRKLQSPSEQQRDPAIKSWSSSHN 732

Query: 195  -----------AGGWATPKTGGWNXXXXXXXXXXXXXXXXXQKAGGWTENVST-ELTQQE 338
                         GW +P   GWN                 ++   W +  S  +  Q E
Sbjct: 733  VMKEQSNQPASTHGWDSPGAKGWNDV---------------EEQSQWNQRGSAVKNDQSE 777

Query: 339  PSQGWNTPTTGAKSSQWSHQESGTSQPKASQGWDSPIDGGGG---SESQWGPPRGGFRKN 509
             S GW     G  + Q        +Q  +SQGW SP  G G    ++SQWG P G  +K+
Sbjct: 778  SSHGW-----GPSNEQ--------NQLPSSQGWGSPNAGAGHESETQSQWGQPSG--KKS 822

Query: 510  RRDGG--------EWKNKNFRPPNSPGTFGD---VPAFFTATRQRIDMFTSDEQDIIKDV 656
            R +G         EWKNK  RP    G   D       FTATRQR+D+FTS+EQDI+ DV
Sbjct: 823  RPEGSRGWGSNNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDV 882

Query: 657  DPIVTPIKRIMR--GY--------------------------------------NDGVRL 716
            +PI+  I+RIM   GY                                      +  V L
Sbjct: 883  EPIMQSIRRIMHQAGYLSMNLYANIFIVVAGMVKIEYLVYGQGVPTLGDTKHWHSGAVSL 942

Query: 717  SAEDQAFIVDNVLNY---------------------HPDKASKSGTGIDYIKVNTHEFHK 833
               ++ + +D  + Y                     HPDKA K GTGIDY+ V+ H    
Sbjct: 943  PHSERTYKIDIGVQYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFL 1002

Query: 834  DSRCLYVVSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQ-RNRERSLSVAP 1010
            +SRC YVVS+DG +EDFSY KC++NF+ EKYP+ AE+F  KYFR+P    NRERS+    
Sbjct: 1003 ESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRRPRAGGNRERSVIPED 1062

Query: 1011 ETPRERSVGPE 1043
               RE+SV PE
Sbjct: 1063 GGNREQSVVPE 1073


>gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus guttatus]
          Length = 2113

 Score =  174 bits (440), Expect = 7e-41
 Identities = 92/222 (41%), Positives = 130/222 (58%), Gaps = 3/222 (1%)
 Frame = +3

Query: 324  LTQQEPSQGWNTPTTGAKSSQWSHQESGTSQPKA-SQGWDSPIDGGGGSESQWGPPRGGF 500
            L     SQGW +      +      + G  + +   +GW   +  G       GP     
Sbjct: 1831 LNDSTDSQGWGSSKVDTANDNDEQPQWGRGRGRGRGRGWGRGVGRGREGSQGRGPTNDRD 1890

Query: 501  RKNRRDGGEWKNKNFRPPNSPGTFGDVPAFFTATRQRIDMFTSDEQDIIKDVDPIVTPIK 680
             KN+R GG   +     PN+PG        FTA+RQR+D FT++EQ+++ + + I+  I+
Sbjct: 1891 WKNKRSGGPVDD-----PNAPG-------IFTASRQRLDSFTAEEQEVLLETETIMKNIR 1938

Query: 681  RIMR--GYNDGVRLSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYV 854
            R+M   GYNDG  LSA+DQ +IVDNVLN+HP+K+ K G G+D+I VN H   + SRCLY 
Sbjct: 1939 RVMHQTGYNDGDPLSADDQKYIVDNVLNHHPEKSLKIGAGLDHIMVNKHSEFQMSRCLYA 1998

Query: 855  VSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQR 980
            V+ DG + DFSY KC+ NF+  KYP++AESF  KYF+KP+ R
Sbjct: 1999 VTIDGSKADFSYRKCLDNFIRGKYPDVAESFIAKYFKKPQPR 2040