BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00012734
         (780 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   388   e-105
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   383   e-104
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   382   e-104
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   381   e-103
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...   377   e-102
gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]   375   e-102
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      375   e-101
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      374   e-101
ref|XP_007225261.1| hypothetical protein PRUPE_ppa001524mg [Prun...   374   e-101
ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutr...   372   e-101
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   371   e-100
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   371   e-100
gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza]   370   e-100
gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tu...   370   e-100
gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum de...   370   e-100
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...   370   e-100
gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum de...   370   e-100
gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum de...   368   2e-99
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   367   2e-99
gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tu...   367   2e-99

>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  388 bits (996), Expect = e-105
 Identities = 202/263 (76%), Positives = 225/263 (85%), Gaps = 4/263 (1%)
 Frame = +2

Query: 2    DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
            DEDL+K++STDLSPR +SA    RT I+ RIL  LRNGI+IG +KFEFLAFSSSQLRE+S
Sbjct: 412  DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 471

Query: 182  AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDM- 358
            AWMFAS  GL A+ IREWMGNF +IRNVAKYAARLGQSF SSKETLSV  DEIEIIPD+ 
Sbjct: 472  AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 531

Query: 359  -EVGT--YVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKL 529
             E+G   YVFSDGIGK+SAEFA++VA KCGLK + PSAFQIRYGGYKGVVA DPTS  KL
Sbjct: 532  IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 591

Query: 530  SLRSSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDA 709
            SLR SM KYESE TKLDVLAWSK+QPCFLNRQLI+LLSTL + D +FEKKQRE + QLDA
Sbjct: 592  SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 651

Query: 710  ILKDPLRAQDALELMSPGENTNI 778
            IL DPL+AQ+ALELMSPGENTNI
Sbjct: 652  ILTDPLKAQEALELMSPGENTNI 674


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  383 bits (983), Expect = e-104
 Identities = 203/263 (77%), Positives = 225/263 (85%), Gaps = 4/263 (1%)
 Frame = +2

Query: 2    DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
            DE+LEK++STD+SPRT+S +  +RT I+ RIL  L+NGIVIG KKFEFLAFSSSQLRENS
Sbjct: 408  DEELEKIHSTDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENS 467

Query: 182  AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDME 361
             WMFAS LGL A+ IR WMG+F +IRNVA+YAARLGQSFGSS ETLSV   EIEIIPD+E
Sbjct: 468  CWMFASRLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIE 527

Query: 362  V---GT-YVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKL 529
            V   GT Y+FSDGIGKISAEFA++VAIKCG K  TPSAFQIRY GYKGVVAVDPTS  KL
Sbjct: 528  VSRGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKL 587

Query: 530  SLRSSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDA 709
            SLR SM KYESENTKLDVLA SK+QPCFLNRQLITLLSTL V D  FE+KQRE + QLDA
Sbjct: 588  SLRRSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDA 647

Query: 710  ILKDPLRAQDALELMSPGENTNI 778
            +L DPLRAQ+ALELMSPGENTNI
Sbjct: 648  MLTDPLRAQEALELMSPGENTNI 670


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  382 bits (982), Expect = e-104
 Identities = 201/263 (76%), Positives = 225/263 (85%), Gaps = 4/263 (1%)
 Frame = +2

Query: 2    DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
            DE+LEK++ST +SPR  S +G +RTG++RRIL IL+NGIVIG KKF+FLAFSSSQLR+NS
Sbjct: 399  DENLEKIHSTVISPRM-SKEG-RRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNS 456

Query: 182  AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDME 361
            AWMFAS  GL A+ IR WMG+FSQIRNVAKYAARLGQSF SSKETL V +DEIE IPD+E
Sbjct: 457  AWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIE 516

Query: 362  VG----TYVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKL 529
            +     TYVFSDGIGKIS + A RVAIKCG KSSTPSAFQIRYGGYKGVVAVDPTS  KL
Sbjct: 517  IHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKL 576

Query: 530  SLRSSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDA 709
            SLR SM KYES+NT LDVLAWSK+QP FLNRQLITLLSTL V+D VFEKKQR  + QLD 
Sbjct: 577  SLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDT 636

Query: 710  ILKDPLRAQDALELMSPGENTNI 778
            ILKDP+ AQ+ALELMSPGENTN+
Sbjct: 637  ILKDPVAAQEALELMSPGENTNV 659


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  381 bits (978), Expect = e-103
 Identities = 201/263 (76%), Positives = 224/263 (85%), Gaps = 4/263 (1%)
 Frame = +2

Query: 2    DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
            DE+ EK++ST +SPR ++    +RTG++RRIL IL+NGIVIG KKF+FLA SSSQLR+NS
Sbjct: 397  DENSEKIHSTVISPRMSNEG--RRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNS 454

Query: 182  AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDME 361
            AWMFAS  GL A+ IR  MG+FSQIRNVAKYAARLGQSF SSKETL V + EIEIIPD+E
Sbjct: 455  AWMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIE 514

Query: 362  VG----TYVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKL 529
                  TYVFSDGIGKISAE A RVAIKCG K+STPSAFQIRYGGYKGVVAVDPTS  KL
Sbjct: 515  THRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKL 574

Query: 530  SLRSSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDA 709
            SLR SM KYESENT LDVL+WSK++PCFLNRQLITLLSTL V+D VFEKKQRE + QLD 
Sbjct: 575  SLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDT 634

Query: 710  ILKDPLRAQDALELMSPGENTNI 778
            ILKDPLRAQ+ALELMSPGENTNI
Sbjct: 635  ILKDPLRAQEALELMSPGENTNI 657


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score =  377 bits (968), Expect = e-102
 Identities = 189/260 (72%), Positives = 226/260 (86%), Gaps = 1/260 (0%)
 Frame = +2

Query: 2    DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
            DE+ +K+YSTDLSPR A+ D +KRT ++ R++ ILR+G+ IG +KF+FLAFSSSQLR+NS
Sbjct: 398  DEEWDKMYSTDLSPRVAAGDENKRTKLYERVISILRDGVRIGDRKFDFLAFSSSQLRDNS 457

Query: 182  AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDME 361
             WMFA + GLNA  IREWMG+FS IRNVAKYAARLGQSFGSS ETLSV + EIE I D++
Sbjct: 458  LWMFAPTDGLNADGIREWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSKREIEEIQDVK 517

Query: 362  VGT-YVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKLSLR 538
             GT Y FSDGIGKIS +FA++VA KCG++SSTPSAFQIRYGGYKGVVAVDP+S  KLSLR
Sbjct: 518  NGTEYTFSDGIGKISEDFARQVAAKCGVRSSTPSAFQIRYGGYKGVVAVDPSSKKKLSLR 577

Query: 539  SSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDAILK 718
             SM KY+S+NTKLDVLAWSK+QPCFLNRQ+ITLLSTL V+D VFEK+QRE +AQLD +L 
Sbjct: 578  PSMLKYQSDNTKLDVLAWSKYQPCFLNRQIITLLSTLGVKDHVFEKRQREAVAQLDDVLI 637

Query: 719  DPLRAQDALELMSPGENTNI 778
            DP+RAQ+AL+LMSPGENT+I
Sbjct: 638  DPMRAQEALDLMSPGENTHI 657


>gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]
          Length = 1101

 Score =  375 bits (964), Expect = e-102
 Identities = 189/263 (71%), Positives = 220/263 (83%), Gaps = 4/263 (1%)
 Frame = +2

Query: 2    DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
            DE+ +K+YSTDLSP+ A+  G+ RT ++ R+L  LRNGI IG K+F+FLAFSSSQLRENS
Sbjct: 401  DEEWDKMYSTDLSPKVATGVGNGRTKLYERVLSTLRNGITIGEKRFQFLAFSSSQLRENS 460

Query: 182  AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDME 361
             WMFA   GL A  IR WMG+FS IRNVAKYAARLGQSF SS ETL V + E+E IPD+E
Sbjct: 461  LWMFAPVDGLTADDIRRWMGDFSSIRNVAKYAARLGQSFSSSTETLKVAQYEVERIPDVE 520

Query: 362  V----GTYVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKL 529
            V     TY+FSDGIGKIS++FA+RVA KCG++   PSAFQIRYGGYKGVVAVDPTS +KL
Sbjct: 521  VVRDGTTYIFSDGIGKISSDFARRVATKCGIRDGVPSAFQIRYGGYKGVVAVDPTSSMKL 580

Query: 530  SLRSSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDA 709
            SLR SM KY+S+NTKLDVL+WSK+QPCF+NRQ+ITLLSTL VRD VFEKKQRE +AQLD 
Sbjct: 581  SLRKSMLKYQSDNTKLDVLSWSKYQPCFMNRQIITLLSTLGVRDHVFEKKQREAVAQLDD 640

Query: 710  ILKDPLRAQDALELMSPGENTNI 778
            IL DPL+AQDAL+LMSPGENTNI
Sbjct: 641  ILVDPLKAQDALDLMSPGENTNI 663


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  375 bits (962), Expect = e-101
 Identities = 195/263 (74%), Positives = 221/263 (84%), Gaps = 4/263 (1%)
 Frame = +2

Query: 2    DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
            DE+LEK++ST++  R       +RTGI++RIL  LRNGIVIG+K+FEFLAFSSSQLRENS
Sbjct: 407  DEELEKIHSTNVQAR------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENS 460

Query: 182  AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDME 361
            AWMFAS  GL A+ IR WMGNFS+IRNVAKYAARLGQSF SS ETLSV +DEI +IPD+E
Sbjct: 461  AWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIE 520

Query: 362  VGT----YVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKL 529
            +      YVF DGIGKISAEFA++VA KC LK  TPSAFQIR GG+KGVVA+DPTS  KL
Sbjct: 521  IMKDGIKYVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKL 580

Query: 530  SLRSSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDA 709
            SLR SM KYESENTKLDVLAWSK+QPCFLNRQLITLLSTL V D+ FEKKQREV+ QL+A
Sbjct: 581  SLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNA 640

Query: 710  ILKDPLRAQDALELMSPGENTNI 778
            +L DPL AQ+ALELMSPGENTNI
Sbjct: 641  LLTDPLEAQEALELMSPGENTNI 663


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  374 bits (961), Expect = e-101
 Identities = 196/263 (74%), Positives = 221/263 (84%), Gaps = 4/263 (1%)
 Frame = +2

Query: 2    DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
            DE+LEK++ST++  R       +RTGI++RIL  LRNGIVIG+K+FEFLAFSSSQLRENS
Sbjct: 407  DEELEKIHSTNVQAR------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENS 460

Query: 182  AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDME 361
            AWMFAS  GL A+ IR WMGNFS+IRNVAKYAARLGQSF SS ETLSV +DEI +IPD+E
Sbjct: 461  AWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIE 520

Query: 362  VGT----YVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKL 529
            +      YVFSDGIGKISAEFA++VA KC LK  TPSAFQIR GG+KGVVA+DPTS  KL
Sbjct: 521  IMKDGIKYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKL 580

Query: 530  SLRSSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDA 709
            SLR SM KYESENTKLDVLAWSK+QPCFLNRQLITLLSTL V D  FEKKQREV+ QL+A
Sbjct: 581  SLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNA 640

Query: 710  ILKDPLRAQDALELMSPGENTNI 778
            +L DPL AQ+ALELMSPGENTNI
Sbjct: 641  LLTDPLEAQEALELMSPGENTNI 663


>ref|XP_007225261.1| hypothetical protein PRUPE_ppa001524mg [Prunus persica]
           gi|462422197|gb|EMJ26460.1| hypothetical protein
           PRUPE_ppa001524mg [Prunus persica]
          Length = 808

 Score =  374 bits (960), Expect = e-101
 Identities = 191/261 (73%), Positives = 224/261 (85%), Gaps = 2/261 (0%)
 Frame = +2

Query: 2   DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
           DE+L+KL+++DLSPRT++A+G+ +T I++RIL ILRNGIVIG KKFEFLAFSSSQLRENS
Sbjct: 96  DEELDKLFASDLSPRTSNANGENKTDIYKRILSILRNGIVIGEKKFEFLAFSSSQLRENS 155

Query: 182 AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDM- 358
            WMFAS  GL A+ IREWMGNF  IRNVAKYAARLGQSFGSS ETL+V   EIE+IPD+ 
Sbjct: 156 MWMFASRWGLTAADIREWMGNFCHIRNVAKYAARLGQSFGSSTETLNVGEHEIEVIPDVV 215

Query: 359 -EVGTYVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKLSL 535
                YVFSDGIGKISA+FA++VA+KCG K  TPSAFQIRYGGYKGVVAVD TS+ KLSL
Sbjct: 216 SRDNKYVFSDGIGKISADFAKKVAVKCGFKGCTPSAFQIRYGGYKGVVAVDRTSYKKLSL 275

Query: 536 RSSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDAIL 715
           RSSM KYESE+TKLDVLA SKFQPCFLNRQLITLLSTL +++ VF +KQR  + QLDA+L
Sbjct: 276 RSSMYKYESEHTKLDVLACSKFQPCFLNRQLITLLSTLGIQNHVFLEKQRAAVQQLDAML 335

Query: 716 KDPLRAQDALELMSPGENTNI 778
            DPL+AQ+AL++M  GE+TNI
Sbjct: 336 TDPLKAQEALDMMYAGESTNI 356


>ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutrema salsugineum]
            gi|557094740|gb|ESQ35322.1| hypothetical protein
            EUTSA_v10006629mg [Eutrema salsugineum]
          Length = 1108

 Score =  372 bits (956), Expect = e-101
 Identities = 194/263 (73%), Positives = 223/263 (84%), Gaps = 4/263 (1%)
 Frame = +2

Query: 2    DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
            DEDLEK+ S DLSPR+ +    +RT ++ RI  +LR+GIVIG KKFEFLAFSSSQLRENS
Sbjct: 408  DEDLEKIRSMDLSPRSTT---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENS 464

Query: 182  AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDME 361
            AWMFA   GL+A +IR WMG+F  IRNVAKYAARLGQSF SS+ETL+VR DEIE+IPD+E
Sbjct: 465  AWMFAPIDGLSAEIIRAWMGDFEHIRNVAKYAARLGQSFSSSRETLNVRTDEIEVIPDVE 524

Query: 362  V---GT-YVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKL 529
            +   GT YVFSDGIGKIS+EFA+RVA KCGL   TPSAFQIRYGGYKGVVAVD  S+ KL
Sbjct: 525  ITYLGTRYVFSDGIGKISSEFARRVAKKCGLTEFTPSAFQIRYGGYKGVVAVDRNSYKKL 584

Query: 530  SLRSSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDA 709
            SLR SMSK+ES+NTKLDVLAWSK+QPC+LNRQLITLLSTL V+D+VFEKKQREV+ +LDA
Sbjct: 585  SLRKSMSKFESKNTKLDVLAWSKYQPCYLNRQLITLLSTLGVKDYVFEKKQREVVDKLDA 644

Query: 710  ILKDPLRAQDALELMSPGENTNI 778
            IL DPL A +AL LM+PGENT I
Sbjct: 645  ILTDPLEAHEALGLMAPGENTKI 667


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score =  371 bits (952), Expect = e-100
 Identities = 195/263 (74%), Positives = 222/263 (84%), Gaps = 4/263 (1%)
 Frame = +2

Query: 2    DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
            DEDLEK+ S DLSPR+++    +RT ++ RI  +LR+GIVIG KKFEFLAFSSSQLRENS
Sbjct: 409  DEDLEKVRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENS 465

Query: 182  AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDME 361
            AWMFA   GL ++ IR WMG+F  IRNVAKYAARLGQSF SS+ETL+VR DEIE+IPD+E
Sbjct: 466  AWMFAPIEGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVE 525

Query: 362  V---GT-YVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKL 529
            +   GT YVFSDGIGKISAEFA+RVA KCGL   +PSAFQIRYGGYKGVVAVDP S  KL
Sbjct: 526  IISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKL 585

Query: 530  SLRSSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDA 709
            SLR SMSK+ESENTKLDVLAWSK+QPC++NRQLITLLSTL V D VFEKKQREV+ +LDA
Sbjct: 586  SLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVEDSVFEKKQREVVDRLDA 645

Query: 710  ILKDPLRAQDALELMSPGENTNI 778
            IL DPL A +AL LM+PGENTNI
Sbjct: 646  ILTDPLEAHEALGLMAPGENTNI 668


>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1097

 Score =  371 bits (952), Expect = e-100
 Identities = 194/263 (73%), Positives = 223/263 (84%), Gaps = 4/263 (1%)
 Frame = +2

Query: 2    DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
            DEDLEK+ S DLSPR+++    +RT ++ RI  +LR+GIVIG KKFEFLAFSSSQLRENS
Sbjct: 399  DEDLEKVRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENS 455

Query: 182  AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDME 361
            AWMFA   GL ++ IR WMG+F  IRNVAKYAARLGQSF SS+ETL+VR DEIE+IPD+E
Sbjct: 456  AWMFAPIDGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVE 515

Query: 362  V---GT-YVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKL 529
            +   GT YVFSDGIGKISAEFA+RVA KCGL   +PSAFQIRYGGYKGVVAVDP S  KL
Sbjct: 516  IISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKL 575

Query: 530  SLRSSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDA 709
            SLR SMSK+ESENTKLDVLAWSK+QPC++NRQLITLLSTL ++D VFEKKQREV+ +LDA
Sbjct: 576  SLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGIKDSVFEKKQREVVDRLDA 635

Query: 710  ILKDPLRAQDALELMSPGENTNI 778
            IL DPL A +AL LM+PGENTNI
Sbjct: 636  ILTDPLEAHEALGLMAPGENTNI 658


>gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza]
          Length = 1118

 Score =  370 bits (950), Expect = e-100
 Identities = 190/263 (72%), Positives = 220/263 (83%), Gaps = 4/263 (1%)
 Frame = +2

Query: 2    DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
            +ED  K+Y++DLSPR A  D + RT ++ R+L  LRNGI IGSKKFEFLAFSSSQLRENS
Sbjct: 334  EEDWSKMYASDLSPRGAGGDENTRTKLYERVLSTLRNGITIGSKKFEFLAFSSSQLRENS 393

Query: 182  AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDME 361
             WMFA   GLNA  IR WMG+FS IRNVAKYAARLGQSFGSS ETLSV ++E+E IPD+E
Sbjct: 394  LWMFAPVDGLNADDIRRWMGDFSSIRNVAKYAARLGQSFGSSTETLSVAQNEVEKIPDVE 453

Query: 362  V----GTYVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKL 529
            V     TY+FSDGIGKIS +FA+RVAIKCGLKS+ PSAFQIRYGGYKGVVA+DPTS VK+
Sbjct: 454  VVTNGTTYIFSDGIGKISVDFARRVAIKCGLKSNIPSAFQIRYGGYKGVVAIDPTSSVKM 513

Query: 530  SLRSSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDA 709
            SLR SM KY+S++TKL+VL WSK+QPCFLNRQ+ITLLSTL V D VFEKKQRE +AQL+ 
Sbjct: 514  SLRPSMLKYQSDDTKLNVLGWSKYQPCFLNRQIITLLSTLGVMDHVFEKKQREAVAQLND 573

Query: 710  ILKDPLRAQDALELMSPGENTNI 778
            IL DPL+A +AL+LMS GENT I
Sbjct: 574  ILVDPLKALEALDLMSLGENTYI 596


>gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 841

 Score =  370 bits (950), Expect = e-100
 Identities = 196/261 (75%), Positives = 223/261 (85%), Gaps = 2/261 (0%)
 Frame = +2

Query: 2    DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
            DE+ EKLYSTDL P+ ++ +G  RT I+ RIL  LR G VIG KKFEFLAFSSSQLR+NS
Sbjct: 398  DEEWEKLYSTDLLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNS 456

Query: 182  AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDME 361
             WMFAS  GL A+ IR WMG+FSQI+NVAKYAARLGQSFGSSKETLSV R EIE+IPD++
Sbjct: 457  VWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVK 516

Query: 362  V-GT-YVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKLSL 535
            V GT YVFSDGIGKISA+FA+RVA KCGL+  TPSAFQIRYGGYKGVVAVDP S +KLSL
Sbjct: 517  VHGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSL 575

Query: 536  RSSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDAIL 715
            R SMSKYES+N KLDVL WSK+QPC+LNRQL+TLLSTL V+D V E+KQ+E + QLDAIL
Sbjct: 576  RKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAIL 635

Query: 716  KDPLRAQDALELMSPGENTNI 778
             D L+AQ+ALELMSPGENTNI
Sbjct: 636  HDSLKAQEALELMSPGENTNI 656


>gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1180

 Score =  370 bits (950), Expect = e-100
 Identities = 196/261 (75%), Positives = 223/261 (85%), Gaps = 2/261 (0%)
 Frame = +2

Query: 2    DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
            DE+ EKLYSTDL P+ ++ +G  RT I+ RIL  LR G VIG KKFEFLAFSSSQLR+NS
Sbjct: 364  DEEWEKLYSTDLLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNS 422

Query: 182  AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDME 361
             WMFAS  GL A+ IR WMG+FSQI+NVAKYAARLGQSFGSSKETLSV R EIE+IPD++
Sbjct: 423  VWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVK 482

Query: 362  V-GT-YVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKLSL 535
            V GT YVFSDGIGKISA+FA+RVA KCGL+  TPSAFQIRYGGYKGVVAVDP S +KLSL
Sbjct: 483  VHGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSL 541

Query: 536  RSSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDAIL 715
            R SMSKYES+N KLDVL WSK+QPC+LNRQL+TLLSTL V+D V E+KQ+E + QLDAIL
Sbjct: 542  RKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAIL 601

Query: 716  KDPLRAQDALELMSPGENTNI 778
             D L+AQ+ALELMSPGENTNI
Sbjct: 602  HDSLKAQEALELMSPGENTNI 622


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score =  370 bits (949), Expect = e-100
 Identities = 194/263 (73%), Positives = 223/263 (84%), Gaps = 4/263 (1%)
 Frame = +2

Query: 2    DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
            DEDLEK+ S DLSPR+++    +RT ++ RI  +LR+GIVIG KKFEFLAFSSSQLRENS
Sbjct: 409  DEDLEKVRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENS 465

Query: 182  AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDME 361
            AWMFA   GL ++ IR WMG+F  IRNVAKYAARLGQSF SS+ETL+VR DEIE+IPD+E
Sbjct: 466  AWMFAPIDGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVE 525

Query: 362  V---GT-YVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKL 529
            +   GT YVFSDGIGKISAEFA+RVA KCGL   +PSAFQIRYGGYKGVVAVDP S  KL
Sbjct: 526  IISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKL 585

Query: 530  SLRSSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDA 709
            SLR SMSK+ESENTKLDVLAWSK+QPC++NRQLITLLSTL V+D VF+KKQREV+ +LDA
Sbjct: 586  SLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQREVVDRLDA 645

Query: 710  ILKDPLRAQDALELMSPGENTNI 778
            IL DPL A +AL LM+PGENTNI
Sbjct: 646  ILTDPLEAHEALGLMAPGENTNI 668


>gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1021

 Score =  370 bits (949), Expect = e-100
 Identities = 196/261 (75%), Positives = 223/261 (85%), Gaps = 2/261 (0%)
 Frame = +2

Query: 2    DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
            DE+ EKLYST+L P+ ++ +G  RT I+ RIL  LR G VIG KKFEFLAFSSSQLR+NS
Sbjct: 246  DEEWEKLYSTELLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNS 304

Query: 182  AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDME 361
             WMFAS  GL A+ IR WMG+FSQI+NVAKYAARLGQSFGSSKETLSV R EIE+IPD++
Sbjct: 305  VWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVK 364

Query: 362  V-GT-YVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKLSL 535
            V GT YVFSDGIGKISA+FA+RVA KCGL+  TPSAFQIRYGGYKGVVAVDP S +KL+L
Sbjct: 365  VHGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLTL 423

Query: 536  RSSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDAIL 715
            R SMSKYES+N KLDVL WSK+QPCFLNRQLITLLSTL VRD + E+KQ+E + QLDAIL
Sbjct: 424  RKSMSKYESDNNKLDVLGWSKYQPCFLNRQLITLLSTLGVRDDILEQKQKEAVDQLDAIL 483

Query: 716  KDPLRAQDALELMSPGENTNI 778
             D L+AQ+ALELMSPGENTNI
Sbjct: 484  HDSLKAQEALELMSPGENTNI 504


>gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1139

 Score =  368 bits (944), Expect = 2e-99
 Identities = 195/261 (74%), Positives = 222/261 (85%), Gaps = 2/261 (0%)
 Frame = +2

Query: 2    DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
            DE+ EKLYSTDL P+ ++ +G  RT I+ RIL  LR G VIG KKFEFLAFSSSQLR+NS
Sbjct: 390  DEEWEKLYSTDLLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNS 448

Query: 182  AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDME 361
             WMFAS  GL A+ IR WMG+FSQI+NVAKYAARLGQSFGSSKETLSV R EIE+IPD++
Sbjct: 449  VWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVK 508

Query: 362  V-GT-YVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKLSL 535
            V GT YVFSDGIGKISA+FA+RVA KCGL+  TPSAFQIRYGGYKGVVAVDP S +KLSL
Sbjct: 509  VHGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSL 567

Query: 536  RSSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDAIL 715
            R SMSKYES+N KLDVL WSK+QPC+LNRQL+TLLSTL V+D V E+KQ+E + QLDAIL
Sbjct: 568  RKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAIL 627

Query: 716  KDPLRAQDALELMSPGENTNI 778
             D L+AQ+ALELMSPGENT I
Sbjct: 628  HDSLKAQEALELMSPGENTTI 648


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  367 bits (943), Expect = 2e-99
 Identities = 197/261 (75%), Positives = 222/261 (85%), Gaps = 2/261 (0%)
 Frame = +2

Query: 2    DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
            DE+ EKLYSTDL P+ ++ +G  RT I+ RIL  L+ G VIG KKFEFLAFSSSQLR+NS
Sbjct: 398  DEEWEKLYSTDLLPKASTGNGI-RTNIYVRILSTLQKGFVIGDKKFEFLAFSSSQLRDNS 456

Query: 182  AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDME 361
             WMFAS  GL A  IR WMG+FSQI+NVAKYAARLGQSFGSSKETLSV R EIEIIPD++
Sbjct: 457  VWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEIIPDVK 516

Query: 362  V-GT-YVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKLSL 535
            V GT YVFSDGIGKISA+FA+RVA KCGL+  TPSAFQIRYGGYKGVVAVDP S +KLSL
Sbjct: 517  VHGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSL 575

Query: 536  RSSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDAIL 715
            R SMSKYES+N KLDVL WSK+QPCFLNRQL+TLLSTL V+D V E+KQ+E + QLDAIL
Sbjct: 576  RKSMSKYESDNNKLDVLEWSKYQPCFLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAIL 635

Query: 716  KDPLRAQDALELMSPGENTNI 778
             D L+AQ+ALELMSPGENTNI
Sbjct: 636  HDSLKAQEALELMSPGENTNI 656


>gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
          Length = 1050

 Score =  367 bits (943), Expect = 2e-99
 Identities = 195/261 (74%), Positives = 222/261 (85%), Gaps = 2/261 (0%)
 Frame = +2

Query: 2    DEDLEKLYSTDLSPRTASADGDKRTGIFRRILCILRNGIVIGSKKFEFLAFSSSQLRENS 181
            DE+ EKLYST+L P+ ++ +G  RT I+ RIL  LR G VIG KKFEFLAFSSSQLR+NS
Sbjct: 246  DEEWEKLYSTELLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNS 304

Query: 182  AWMFASSLGLNASVIREWMGNFSQIRNVAKYAARLGQSFGSSKETLSVRRDEIEIIPDME 361
             WMFAS  GL A+ IR WMG+FSQI+NVAKYAARLGQSFGSS ETLSV R EIE+IPD++
Sbjct: 305  VWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVK 364

Query: 362  V-GT-YVFSDGIGKISAEFAQRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSFVKLSL 535
            V GT YVFSDGIGKISA+FA+RVA KCGL+  TPSAFQIRYGGYKGVVAVDP S +KLSL
Sbjct: 365  VHGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSL 423

Query: 536  RSSMSKYESENTKLDVLAWSKFQPCFLNRQLITLLSTLDVRDFVFEKKQREVIAQLDAIL 715
            R SMSKYES+N KLDVL WSK+QPCFLNRQLITLLSTL V+D + E+KQ+E + QLDAIL
Sbjct: 424  RKSMSKYESDNNKLDVLGWSKYQPCFLNRQLITLLSTLGVKDDILEQKQKEAVDQLDAIL 483

Query: 716  KDPLRAQDALELMSPGENTNI 778
             D L+AQ+ALELMSPGENTNI
Sbjct: 484  HDSLKAQEALELMSPGENTNI 504