BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00011009
         (4181 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...  1845   0.0  
ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao...  1782   0.0  
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...  1780   0.0  
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...  1740   0.0  
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [...  1733   0.0  
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s...  1731   0.0  
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr...  1726   0.0  
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...  1726   0.0  
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s...  1697   0.0  
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu...  1695   0.0  
ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phas...  1687   0.0  
ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arab...  1673   0.0  
ref|XP_006279465.1| hypothetical protein CARUB_v10025743mg [Caps...  1665   0.0  
ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana...  1661   0.0  
ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutr...  1659   0.0  
ref|XP_004505923.1| PREDICTED: DNA-directed RNA polymerase III s...  1646   0.0  
dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Ar...  1646   0.0  
ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III s...  1634   0.0  
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A...  1631   0.0  
gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus...  1631   0.0  

>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score = 1845 bits (4780), Expect = 0.0
 Identities = 948/1341 (70%), Positives = 1089/1341 (81%), Gaps = 30/1341 (2%)
 Frame = +2

Query: 2    KPIESGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCI 181
            KPIE+GLLD RMGP NKNG CATC G+F  CPGH GYL L LPVYNVGYL+ I +ILKCI
Sbjct: 53   KPIENGLLDPRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCI 112

Query: 182  CKSCSRILLAEIPRKDYLRRMRTQKI-AQKKTDMQKIIIKTCNTPGLKN----CSRCGYV 346
            CKSCSR+LL E   KDYL++MR+QK+ A KK ++ K I++ C           CSRCGY+
Sbjct: 113  CKSCSRVLLDEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYM 172

Query: 347  NGIVKKATGMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKK 526
            NGIVKKA  +LGIIHDRSKIAD S+EEC +A+SH KE S+ S ++V +L P KVLSLFK+
Sbjct: 173  NGIVKKAVSVLGIIHDRSKIADGSLEECSSAISHTKE-SKASFSVVDILNPVKVLSLFKR 231

Query: 527  MLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLV-GGTRSNENDITERLKRIIQANAR 703
            M+DEDC++L LA+RPEKL++T+I VPP  IRPSV + GGT+SNEND+TERLKRIIQANA 
Sbjct: 232  MMDEDCDLLNLAERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANAS 291

Query: 704  VRTMLD---GTNRSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRF 874
            +   L     T++    W+YLQIEVAQYINS  +GVP  MQA RPLSGFVQRLKGKQGRF
Sbjct: 292  LHQELQDTGSTSKCLAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRF 351

Query: 875  RQNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGS 1054
            R NLS KRVE+TGRTVISPDPNLKITEV +PILMA+ L++PERV+ HNIEKLRQC+ NG 
Sbjct: 352  RGNLSGKRVEYTGRTVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGP 411

Query: 1055 NKYPGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSI 1234
             KYPGAK + +PDGS  SLMF GRKR+ADELK GYIV+RHLEDGDVVLFNRQPSLHRMSI
Sbjct: 412  FKYPGAKLIRYPDGSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSI 471

Query: 1235 MSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPK 1414
            M HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPK
Sbjct: 472  MCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPK 531

Query: 1415 NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWT 1594
            NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMD VDLPTP I KP+ELWT
Sbjct: 532  NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKPVELWT 591

Query: 1595 GKQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLGKA 1774
            GKQLF+VL+RP+A++RVY+NLTV EKT+ K  + ++TMCP+DGFVYFRNSELISGQLGKA
Sbjct: 592  GKQLFNVLLRPHANVRVYLNLTVMEKTYNKR-RGKETMCPSDGFVYFRNSELISGQLGKA 650

Query: 1775 TLGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGESLSCQK 1954
            TLGNG+K+GLFS+LLRDYNAHAAA+CMNRLAKLSARWIGNHGFSIGIDDVQPG  L+ QK
Sbjct: 651  TLGNGNKDGLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLNDQK 710

Query: 1955 TDKINEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRITGQLNTIRETTGDVCMAELHW 2134
            + +I EGY  C E I+ Y+ GKL+L  GC+AAQTLE  ITG LN IRETT +VCM ELHW
Sbjct: 711  SKRIEEGYENCHELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEELHW 770

Query: 2135 RNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGF 2314
            RNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDR+LPHFPR SKTP AKGF
Sbjct: 771  RNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGF 830

Query: 2315 VANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMARRLMKALEDLSIQYDDTVRNA 2494
            VA+SFY+GLTATEFFFHTMGGREGLVDTAVKTADTGYM+RRLMKALEDLSIQYD+TVRNA
Sbjct: 831  VASSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNA 890

Query: 2495 NGGIVQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATCPPARDHPFLSPEDIKQAMDK 2674
            NG IVQF YGDDG+DPA+MEGKDG PLNF+R+F+KVKATC PA ++  LS   I++ + K
Sbjct: 891  NGSIVQFLYGDDGMDPARMEGKDGFPLNFNRLFLKVKATC-PAGENASLSALQIEETV-K 948

Query: 2675 RFSERDATPEGGCSVAFIESLSKFM---------------------GFEKGTFSEKAAQN 2791
            R  E + + E GCS AF  +LS F+                     G E     EK A+N
Sbjct: 949  RLKEHNTSAE-GCSDAFKTNLSGFLEECKEKFKNTREALGLHGEHVGEENLDIQEKFAKN 1007

Query: 2792 ISGVTSKQLQVFLNTCISRYHSKRIEXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASKN 2971
            ISG+TSKQLQVFL+TCISRY  KRIE              EPGTQMTLKTFHFAGVAS N
Sbjct: 1008 ISGITSKQLQVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMN 1067

Query: 2972 VTLGFPRVKEIVGGAKTISRPAITAPLECDDNEKAAQIVKGRIEKTVLGQVAKSIKIVMT 3151
            VTLG PR+KEI+ GAK IS P ITA LEC++N K A++VKGRIE+T LGQVAKSIKIV+T
Sbjct: 1068 VTLGVPRIKEIINGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLT 1127

Query: 3152 QRSGSVVVTLDLKRIEASQLCIDANVVKDAILQIPRIKSKQLNIKVLDVKKLEIIPQVDR 3331
             R   + V LD++ I+ASQL ID+N+V+++IL+  RIK KQ +IKVLD  KLE+ PQ DR
Sbjct: 1128 SRLALIAVALDMEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEVHPQGDR 1187

Query: 3332 SKLHFELSTLKNVLPKTVVKGISTIERVLYQKEKVKGKNREGYQLFVEGTGLLAVMGTEG 3511
            S +HFEL  LKN+LP  VVKGI T+ER +  K+     N+  Y L VEGTGL  VMGTEG
Sbjct: 1188 STIHFELHALKNLLPTVVVKGIETVERAVINKD-----NKVKYNLLVEGTGLQTVMGTEG 1242

Query: 3512 VDGLNTKSNFVKEMQDTLGIEAARKCIIDEIGDVMDKSGMSIDIRHMMLLADVMTFTGDA 3691
            V G  T SN + E+Q TLGIEAARKCII+EI   M   GMSIDIRHMMLLAD+MTF G+ 
Sbjct: 1243 VIGRETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEV 1302

Query: 3692 LGINIFGLTKMKESVLMLASFEKTEYHLFNASVNGREDNIEGVSECIIMGTPIQIGTGIL 3871
            LGI  FG+ KM +SVLMLASFEKT  HLFNASV+GR+D IEGVSECIIMG P+Q+GTGIL
Sbjct: 1303 LGITRFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGIL 1362

Query: 3872 KVKQSVEQVHKLNYAIDPTTS 3934
            KV+Q ++QV +L+Y +DP  S
Sbjct: 1363 KVRQRLQQVPELSYGLDPIIS 1383


>ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao]
            gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase
            [Theobroma cacao]
          Length = 1395

 Score = 1782 bits (4616), Expect = 0.0
 Identities = 924/1349 (68%), Positives = 1063/1349 (78%), Gaps = 38/1349 (2%)
 Frame = +2

Query: 2    KPIESGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCI 181
            +PIE GLLD RMGP NK+G CATCHG+F  CPGHYGYL L LPVYNVGYL+ I +ILKCI
Sbjct: 51   RPIEGGLLDPRMGPANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCI 110

Query: 182  CKSCSRILLAEIPRKDYLRRMRTQKI-AQKKTDMQKIIIKTCNTPGLKN---CSRCGYVN 349
            CKSCSRI+L E   KDYL+RMR+ KI A KK D+ K I+K C+         C RCGYVN
Sbjct: 111  CKSCSRIILDEKLCKDYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKAVKCWRCGYVN 170

Query: 350  GIVKKATGMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMV-YMLTPAKVLSLFKK 526
            G VKKA  MLGIIHDRSKI D S+EE R+A+SH KE S+ S N+  Y+L P KVLSLFK+
Sbjct: 171  GTVKKAVAMLGIIHDRSKINDNSLEEFRSAISHTKE-SKASFNVATYVLNPVKVLSLFKR 229

Query: 527  MLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARV 706
            M D DCE+LYL+DRPEKLIIT+IAVPP  IRPSV++ G++SNENDITERLKRIIQANA +
Sbjct: 230  MTDLDCELLYLSDRPEKLIITNIAVPPIPIRPSVIMDGSQSNENDITERLKRIIQANASL 289

Query: 707  RTMLDGTN---RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFR 877
            R  L  TN   +    WE LQ+EVAQYINS  +GVP  MQ  +PLSGFVQR+KGK GRFR
Sbjct: 290  RQELVETNAAFKCLGGWEMLQVEVAQYINSDVRGVPFSMQVSKPLSGFVQRIKGKHGRFR 349

Query: 878  QNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSN 1057
             NLS KRVE+TGRTVISPDPNLKITEV +PI MA+ LT+PERV++HNIEKLRQCVRNG +
Sbjct: 350  GNLSGKRVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSNHNIEKLRQCVRNGPS 409

Query: 1058 KYPGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIM 1237
            KYPGA+ + +PDGS   L+   RKR ADELK G +VDRHLEDGD+VLFNRQPSLHRMSIM
Sbjct: 410  KYPGARMVRYPDGSARLLIGDYRKRLADELKFGCVVDRHLEDGDIVLFNRQPSLHRMSIM 469

Query: 1238 SHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKN 1417
             HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPKN
Sbjct: 470  CHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKN 529

Query: 1418 GEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTG 1597
            GEILVASTQDFLTSSFLITRKD FYDRAAFSL+CSYMGDGMD +DLPTP + KPIELWTG
Sbjct: 530  GEILVASTQDFLTSSFLITRKDIFYDRAAFSLICSYMGDGMDLIDLPTPALLKPIELWTG 589

Query: 1598 KQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKRE--------KTMCPNDGFVYFRNSELI 1753
            KQLFSVL+RP+AS+RVY+NL V E+ ++K   +         +TMCP+DGFVY RNSELI
Sbjct: 590  KQLFSVLLRPHASVRVYLNLIVKERNYSKKIIKRIGNKEIEVETMCPDDGFVYIRNSELI 649

Query: 1754 SGQLGKATLGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPG 1933
             GQLGKATLGNG+K+GL+S+LLRDYNAHAAA+CMNRLAKLSARWIGNHGFSIGIDDVQPG
Sbjct: 650  CGQLGKATLGNGNKDGLYSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPG 709

Query: 1934 ESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRITGQLNTIRETTGDV 2113
            + L+ +K   I+  Y KCDE I+ +++GKL+   G DAAQTLE  +T  LN IR+ TG V
Sbjct: 710  KRLNDEKALTISGDYKKCDEEIQTFNEGKLKPKPGYDAAQTLEANVTAILNNIRDKTGKV 769

Query: 2114 CMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNSK 2293
            CM ELHWRNSPLIMSQCGSKGS INISQMIACVGQQSVGGRRAPNGFIDRSLPHF R SK
Sbjct: 770  CMKELHWRNSPLIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSK 829

Query: 2294 TPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMARRLMKALEDLSIQY 2473
            TPAAKGFVANSFYSGLTATEFFFHTM GREGLVDTAVKTA+TGYM+RRL+KALEDLSI Y
Sbjct: 830  TPAAKGFVANSFYSGLTATEFFFHTMAGREGLVDTAVKTAETGYMSRRLIKALEDLSIHY 889

Query: 2474 DDTVRNANGGIVQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATCPPARDHPFLSPED 2653
            D+TVRNA+G IVQF YGDDG+DPA MEGK G PLNFDR+ MKVKATCPP  +   L    
Sbjct: 890  DNTVRNASGCIVQFIYGDDGMDPACMEGKSGFPLNFDRLLMKVKATCPPI-EQKCLHVGS 948

Query: 2654 IKQAMDKRFSERDATPEGGCSVAFIESLSKFMG----------------FEKGTFSEKAA 2785
            I Q ++++ ++ D  P G CS AF +SL  F+                  +K    EK  
Sbjct: 949  IMQMLEEQLAKHD--PAGVCSEAFKKSLKGFLKSQTNELDRVMKLVNNCAQKSEILEKVG 1006

Query: 2786 QNISGVTSKQLQVFLNTCISRYHSKRIEXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVAS 2965
              ISG++ +QL+VF++TCISRY SK IE              EPGTQMTLKTFHFAGVAS
Sbjct: 1007 HKISGISDRQLEVFVSTCISRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVAS 1066

Query: 2966 KNVTLGFPRVKEIVGGAKTISRPAITAPLECDDNEKAAQIVKGRIEKTVLGQVAKSIKIV 3145
             N+T G PR+KEI+  AK IS P ITA LE DDN   AQIVKGRIEKTVLGQVAKSIKIV
Sbjct: 1067 MNITQGVPRIKEIINAAKRISTPVITAELEFDDNPNIAQIVKGRIEKTVLGQVAKSIKIV 1126

Query: 3146 MTQRSGSVVVTLDLKRIEASQLCIDANVVKDAILQIPRIKSKQLNIKVLDVKKLEIIPQV 3325
            +T RS SVV+TLD++ I  ++L IDAN+VK++ILQ P+IK K+ ++KVLD +KLE++P  
Sbjct: 1127 ITSRSASVVITLDMEIILDAELYIDANIVKESILQTPKIKLKEQHVKVLDGRKLEVVPPA 1186

Query: 3326 DRSKLHFELSTLKNVLPKTVVKGISTIER-VLYQKEKVKGKNRE-----GYQLFVEGTGL 3487
            DRS++HFEL +LKN+LP  VVKGI T+ER V+Y K K K   +E      +QL VEGTGL
Sbjct: 1187 DRSQIHFELHSLKNLLPLVVVKGIKTVERTVVYDKNKEKKNQKEEETTKHFQLLVEGTGL 1246

Query: 3488 LAVMGTEGVDGLNTKSNFVKEMQDTLGIEAARKCIIDEIGDVMDKSGMSIDIRHMMLLAD 3667
             AVMG EG+DG  T SN V EM+  LGIEAARKCIIDEI   M+  GM+ID RHMMLLAD
Sbjct: 1247 QAVMGIEGIDGRRTWSNHVMEMEQILGIEAARKCIIDEIAQTMEHHGMTIDRRHMMLLAD 1306

Query: 3668 VMTFTGDALGINIFGLTKMKESVLMLASFEKTEYHLFNASVNGREDNIEGVSECIIMGTP 3847
            VMTF G+ LGI  FG+ KM +S+LMLASFE+T  HLFNA+VNGR+D IEGV+ECIIMG P
Sbjct: 1307 VMTFRGEVLGITRFGIQKMDKSILMLASFERTADHLFNAAVNGRDDKIEGVTECIIMGIP 1366

Query: 3848 IQIGTGILKVKQSVEQVHKLNYAIDPTTS 3934
            +QIGTGILKV Q V+    L Y  DP  S
Sbjct: 1367 MQIGTGILKVIQRVDPPPMLRYGPDPVLS 1395


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            rpc1-like isoform X2 [Citrus sinensis]
          Length = 1404

 Score = 1780 bits (4611), Expect = 0.0
 Identities = 918/1350 (68%), Positives = 1063/1350 (78%), Gaps = 40/1350 (2%)
 Frame = +2

Query: 5    PIESGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCIC 184
            PIE GLLD RMGP NK+  CATCHG F+ CPGHYGYL L LPVYNVGYL+ I +ILKCIC
Sbjct: 61   PIEGGLLDPRMGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCIC 120

Query: 185  KSCSRILLAEIPRKDYLRRMRTQKI-AQKKTDMQKIIIKTCNTPGLK--NCSRCGYVNGI 355
            K CSR+LL E   KDYL++MR  K+ A +KTD+ K I+K C+T   K   C RCGY+NG+
Sbjct: 121  KYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGM 180

Query: 356  VKKATGMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMV-YMLTPAKVLSLFKKML 532
            VKKA  +LGIIHDRSK+ + S++E  +A++H KE S+ +VN+  Y+L P  VL LFK+M 
Sbjct: 181  VKKAVAVLGIIHDRSKVTE-SLQEFASAITHTKE-SKAAVNVATYILNPVNVLFLFKRMT 238

Query: 533  DEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRT 712
            D DCEVLYL++RPEKLIIT+IAVPP  IRPSV++ G++SNENDITERLKRIIQ NA ++ 
Sbjct: 239  DTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQ 298

Query: 713  MLDGTN---RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQN 883
             L   N   +S   WE LQ+EVAQYINS  +GVP  MQ  RPLSGFVQRLKGKQGRFR N
Sbjct: 299  ELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGN 358

Query: 884  LSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKY 1063
            LS KRVE+TGRTVISPDPNLKITEV +PI MA+ LT+PERV+ HNIEKLRQC++NG +KY
Sbjct: 359  LSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKY 418

Query: 1064 PGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSH 1243
            PGA+ + +PDG+   L    R + A ELK G IVDRHLEDGDVVLFNRQPSLHRMSIM H
Sbjct: 419  PGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 478

Query: 1244 RAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGE 1423
            RA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPKNGE
Sbjct: 479  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 538

Query: 1424 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQ 1603
            ILVASTQDFLTSSFLITRKDTFYDRAAFSLMC YMGDGMD VDLPTP I KP+ELWTGKQ
Sbjct: 539  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 598

Query: 1604 LFSVLVRPNASLRVYVNLTVTEKTFTKSWKRE--------KTMCPNDGFVYFRNSELISG 1759
            LFSVL+RP+A++RVYVNLTV EKT++    R         +TMCPNDGFVYFRNSELISG
Sbjct: 599  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 658

Query: 1760 QLGKATLGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGES 1939
            QLGKATLGNG+K+GL+S+LLRDY AHA + CMNRLAKLSARWIGNHGFSIGIDDVQP + 
Sbjct: 659  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 718

Query: 1940 LSCQKTDKINEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRITGQLNTIRETTGDVCM 2119
            LS +K   I+E Y  C+  IK Y++GKL+L  GCDAAQTLE  IT  LN IRE  G  CM
Sbjct: 719  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 778

Query: 2120 AELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNSKTP 2299
              L WRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPNGFIDRSLPHFPR +K P
Sbjct: 779  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 838

Query: 2300 AAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMARRLMKALEDLSIQYDD 2479
            AAKGFVANSFYSGL+ATEFFFHTMGGREGLVDTAVKTADTGYM+RRL+KALEDLSIQYD+
Sbjct: 839  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 898

Query: 2480 TVRNANGGIVQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATCPPARDHPFLSPEDIK 2659
            +VRNA G IVQF YGDDG+DPA MEGK G PLNFDR+ MKVKATCPPA    +LSP+ + 
Sbjct: 899  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQR-YLSPQQVS 957

Query: 2660 QAMDKRFSERDATPEGGCSVAFIESLSKF-----------------MGF-EKGTFSEKAA 2785
            + ++K+ +   A  +  CS AF+ SL KF                 +G+ +K    E+  
Sbjct: 958  EIVEKQLA---AYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVT 1014

Query: 2786 QNISGVTSKQLQVFLNTCISRYHSKRIEXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVAS 2965
               SG+T KQL+VF+ TC SRYH KR+E              EPGTQMTLKTFHFAGVAS
Sbjct: 1015 HKTSGITEKQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVAS 1074

Query: 2966 KNVTLGFPRVKEIVGGAKTISRPAITAPLECDDNEKAAQIVKGRIEKTVLGQVAKSIKIV 3145
             N+T G PR+KEI+ GAK IS P ITA LEC+DNE AA++VKGRIEKT+LGQVAKSIKIV
Sbjct: 1075 MNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIV 1134

Query: 3146 MTQRSGSVVVTLDLKRIEASQLCIDANVVKDAILQIPRIKSKQLNIKVLDVKKLEIIPQV 3325
            MT R  S+V+ LD++ I+ + LCI+A++VK++I+Q P+IK KQ +IKVLD +KLEI P V
Sbjct: 1135 MTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPV 1194

Query: 3326 DRSKLHFELSTLKNVLPKTVVKGISTIER-VLYQKEKVKGKNREG-----YQLFVEGTGL 3487
            D+SK+HFEL +LKNVLP  +VKGI T+ER V+ +KEK K K +E      Y+L VEGTGL
Sbjct: 1195 DKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGL 1254

Query: 3488 LAVMGTEGVDGLNTKSNFVKEMQDTLGIEAARKCIIDEIGDVMDKSGMSIDIRHMMLLAD 3667
             AVMG EG+DG  TKSN + E+Q TLGIEAAR CIIDEI + M   GMSID RHMMLLAD
Sbjct: 1255 QAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLAD 1314

Query: 3668 VMTFTGDALGINIFGLTKMKESVLMLASFEKTEYHLFNASVNGREDNIEGVSECIIMGTP 3847
            +MTF G+ LGI  FG+ KM +SVLMLASFEKT  HLFNASVNGR+D IEGVSECIIMG P
Sbjct: 1315 LMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIP 1374

Query: 3848 IQIGTGILKVKQSVEQVHKLNY-AIDPTTS 3934
            + +GTGILK++Q       L Y A DP  S
Sbjct: 1375 MPLGTGILKIRQRDAVPPMLKYGAPDPIMS 1404


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Solanum tuberosum]
          Length = 1394

 Score = 1740 bits (4507), Expect = 0.0
 Identities = 892/1343 (66%), Positives = 1050/1343 (78%), Gaps = 35/1343 (2%)
 Frame = +2

Query: 2    KPIESGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCI 181
            KPI++GLLD RMGPPNKNG C TCHG+F +CPGHYGYL L LPVYNVGYL  + +ILKCI
Sbjct: 56   KPIQNGLLDPRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCI 115

Query: 182  CKSCSRILLAEIPRKDYLRRMRTQKIA-QKKTDMQKIIIKTCNTPG----LKNCSRCGYV 346
            CK CS ILL +  R+D L++MR  +    KK+++ K ++K CN          CS+CGY+
Sbjct: 116  CKCCSSILLDDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYM 175

Query: 347  NGIVKKATGMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKK 526
            NG+VKK    L I H++    ++ ++E   A+S  K + R SV++   L P  V SLFK 
Sbjct: 176  NGMVKKL--QLKITHEQG---NRILDEINVAISD-KRELRASVSVPPELDPKVVYSLFKN 229

Query: 527  MLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLV-GGTRSNENDITERLKRIIQANAR 703
            M DEDCE+LYL+DRPEKL++TSI VPP  IRPSV V GGT+SNENDITERLKRIIQANA 
Sbjct: 230  MSDEDCELLYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANAS 289

Query: 704  VRTMLDGTN--RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFR 877
            +   +  ++  +S   W  LQ+EVAQYINS  +GVP HMQA RPLSGF QRLKGKQGRFR
Sbjct: 290  LHQEMSDSSPVKSLNLWIDLQMEVAQYINSDVRGVPLHMQAQRPLSGFTQRLKGKQGRFR 349

Query: 878  QNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSN 1057
             NLS KRVE+TGRTVISPDPNLKITEV +PILMAQ LT+PERV+ HNIEKLRQCVRNG N
Sbjct: 350  GNLSGKRVEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPN 409

Query: 1058 KYPGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIM 1237
            KYPGAKF+  PDGS++SLMF  RKR+ADELK GYIVDRHLEDGD+VLFNRQPSLHRMSIM
Sbjct: 410  KYPGAKFIRHPDGSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIM 469

Query: 1238 SHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKN 1417
            SHRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPK+
Sbjct: 470  SHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKS 529

Query: 1418 GEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTG 1597
            GEILVASTQDFLTSSFLITRKDTFY+RA+FSL+CSYMGD MD  DLP+P   KP+ELWTG
Sbjct: 530  GEILVASTQDFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTG 589

Query: 1598 KQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLGKAT 1777
            KQLF +L+RP + +RVYVNLTVTEK+++    + +TMCP+DGFVYFRNSELISGQLGKAT
Sbjct: 590  KQLFHMLLRPYSKMRVYVNLTVTEKSYS---GKGETMCPSDGFVYFRNSELISGQLGKAT 646

Query: 1778 LGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGESLSCQKT 1957
            LGNG+K+GL+S+LLRDY +HAAA+CMNRLAKLSARWIGNHGFSIGIDDV PGE+L  QK 
Sbjct: 647  LGNGNKDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQ 706

Query: 1958 DKINEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRITGQLNTIRETTGDVCMAELHWR 2137
             +I+  Y KC++ I  +++GKL +  GCDAAQTLE  +T  LN +R+  G +CM  L WR
Sbjct: 707  GEIHRNYKKCEDCITQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWR 766

Query: 2138 NSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFV 2317
            NSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDRSLPHFP  SK PAAKGFV
Sbjct: 767  NSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFV 826

Query: 2318 ANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMARRLMKALEDLSIQYDDTVRNAN 2497
            A+SF+ GL+ATEFFFHTMGGREGLVDTAVKTADTGYM+RRLMKALEDL++ YD TVRNA+
Sbjct: 827  AHSFFDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNAS 886

Query: 2498 GGIVQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATCPPARDHPFLSPEDIKQAMDKR 2677
              IVQF YGDDG+DP+QME K G PLNF R+FMKVKATCPP  +   LS  +I + +++R
Sbjct: 887  ACIVQFMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKS-LSYSEICEIVNER 945

Query: 2678 FSERDATPEGGCSVAFIESLSKFM-----------------------GFEKGTFSEKAAQ 2788
             S  D TPEGGCS AF  SLS F+                       G ++G + EK A 
Sbjct: 946  LSYHDMTPEGGCSEAFRSSLSDFLIKNLAETLKNLRESLLLGEEQYEGDDRG-YLEKIAL 1004

Query: 2789 NISGVTSKQLQVFLNTCISRYHSKRIEXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASK 2968
            NISG+T +QLQVFLNTCISRYH KR+E              EPGTQMTLKTFHFAGVAS 
Sbjct: 1005 NISGITKRQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 1064

Query: 2969 NVTLGFPRVKEIVGGAKTISRPAITAPLECDDNEKAAQIVKGRIEKTVLGQVAKSIKIVM 3148
            NVTLG PR+KEI+  AK I+ P IT  L    N  AA+++K RIEKT+LGQVAKS+KIV+
Sbjct: 1065 NVTLGVPRIKEIINAAKKITTPIITTKLLSAANLTAARMIKARIEKTLLGQVAKSVKIVL 1124

Query: 3149 TQRSGSVVVTLDLKRIEASQLCIDANVVKDAILQIPRIKSKQLNIKVLDVKKLEIIPQVD 3328
              R  S+ ++LD++ I+ SQLCIDA  VK +ILQ  +IK K+  IKVL+ +KLE+ PQ +
Sbjct: 1125 ASRLASIAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVFPQAN 1184

Query: 3329 RSKLHFELSTLKNVLPKTVVKGISTIERVLYQKEKVKGKNR----EGYQLFVEGTGLLAV 3496
            + KLHFEL  LKN LP  VVKGI+T++R +  KE+ K +      E Y+L VEGTGLLAV
Sbjct: 1185 KDKLHFELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAV 1244

Query: 3497 MGTEGVDGLNTKSNFVKEMQDTLGIEAARKCIIDEIGDVMDKSGMSIDIRHMMLLADVMT 3676
            MG EGVDG  TKSN + E+Q+TLGIEAAR  IIDEI   M   GM+ID+RHMMLLAD+MT
Sbjct: 1245 MGIEGVDGRYTKSNHIMEVQNTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMT 1304

Query: 3677 FTGDALGINIFGLTKMKESVLMLASFEKTEYHLFNASVNGREDNIEGVSECIIMGTPIQI 3856
            + G+ LGI   G+ KMK+SVLMLASFEKT  HLFNASVNGR+D IEGV+ECIIMG P+ I
Sbjct: 1305 YKGEVLGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTI 1364

Query: 3857 GTGILKVKQSVEQVHKLNYAIDP 3925
            GTG+ K++Q VEQV +LNY  DP
Sbjct: 1365 GTGMFKLRQRVEQV-ELNYQPDP 1386


>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1394

 Score = 1733 bits (4488), Expect = 0.0
 Identities = 898/1340 (67%), Positives = 1037/1340 (77%), Gaps = 46/1340 (3%)
 Frame = +2

Query: 2    KPIESGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCI 181
            K I  GLLD+RMG PNK+G C TC G FT CPGH+GYL L LPVYNVGYL+ I +ILKCI
Sbjct: 56   KAIVGGLLDTRMGAPNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCI 115

Query: 182  CKSCSRILLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKN---CSRCGYVN 349
            CKSCSR+L+ E  RK YL+RMR  +    KK ++ K I+K C++        C RCGY+N
Sbjct: 116  CKSCSRVLVDEKLRKSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLRCGYMN 175

Query: 350  GIVKKATGMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKM 529
            G+VKKA  ++GIIHDRSK+ D  +EEC++A+ H +E         Y+L P +VLSLF++M
Sbjct: 176  GMVKKAGSVVGIIHDRSKLIDGYLEECKSAIGHTREARAPIGLATYILNPVRVLSLFQRM 235

Query: 530  LDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVR 709
            ++EDCE+LYL  RPEKLIIT+IAVPP  IRPSV   G++SNENDITERLK+IIQ NA++R
Sbjct: 236  VEEDCELLYLQGRPEKLIITTIAVPPISIRPSVFTEGSQSNENDITERLKQIIQFNAKLR 295

Query: 710  T-MLDGTN---RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFR 877
              +L+G     +    W+ LQ  V  YINS  + +P  MQ  RPLSGFVQRL GKQGRFR
Sbjct: 296  LELLEGRRTGIKYLIGWDELQAVVTLYINSDVR-IPLDMQVGRPLSGFVQRLTGKQGRFR 354

Query: 878  QNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSN 1057
            QNL+ KRVEFTGRTVISPDPNLKITEV +PI MA+ LT+PERVT HNIEKLRQCV NGS 
Sbjct: 355  QNLAGKRVEFTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVNNGSY 414

Query: 1058 KYPGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIM 1237
            KYPGA+ + +PDGS   L    RKR A+ELK G IV RHLEDGDVVLFNRQPSLHRMSIM
Sbjct: 415  KYPGARMVTYPDGSSKMLTGNYRKRIAEELKSGCIVHRHLEDGDVVLFNRQPSLHRMSIM 474

Query: 1238 SHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKN 1417
             HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA  LMGVQNNLCTPKN
Sbjct: 475  CHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAFLLMGVQNNLCTPKN 534

Query: 1418 GEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTG 1597
            GEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYM DGMD VDLPTP++ KPIELWTG
Sbjct: 535  GEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMNDGMDLVDLPTPSVLKPIELWTG 594

Query: 1598 KQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKREK----TMCPNDGFVYFRNSELISGQL 1765
            KQLFSVL+RP+A++RVYVNL + EK +++  K  K    TMCPNDG+VYFRNSELISGQL
Sbjct: 595  KQLFSVLLRPHANVRVYVNLILKEKNYSRPNKEHKKERETMCPNDGYVYFRNSELISGQL 654

Query: 1766 GKATLGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGESLS 1945
            GKATLGNG+K+GL+SILLRDYNA+AAA+CMNRLAKLSARWIGNHGFSIGIDDVQPG+ L 
Sbjct: 655  GKATLGNGNKDGLYSILLRDYNAYAAATCMNRLAKLSARWIGNHGFSIGIDDVQPGKKLI 714

Query: 1946 CQKTDKINEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRITGQLNTIRETTGDVCMAE 2125
             +K   I+ GY  C++ I  Y+ G+L L  GCDA QTLE  IT +LN +RE  GDVCM E
Sbjct: 715  DEKGKTISNGYRHCNKLIADYNGGRLALKSGCDATQTLETEITERLNKLREEAGDVCMKE 774

Query: 2126 LHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNSKTPAA 2305
            LHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGG RAP+GFIDRSLPHFPR SKTPAA
Sbjct: 775  LHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGSRAPDGFIDRSLPHFPRKSKTPAA 834

Query: 2306 KGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMARRLMKALEDLSIQYDDTV 2485
            KGFVANSFYSGL+ATEFFFHTMGGREGLVDTAVKTADTGYMARRL K LEDL +QYD+TV
Sbjct: 835  KGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMARRLSKGLEDLCVQYDNTV 894

Query: 2486 RNANGGIVQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATCPPARDHPFLSPEDIKQA 2665
            ++A GGIVQF YGDDGLDPA MEGK GVPLNFDR+FMKVKATC  A +  +LSP DI   
Sbjct: 895  QDAGGGIVQFLYGDDGLDPAIMEGKAGVPLNFDRLFMKVKATC-GAEEDEYLSPSDISNI 953

Query: 2666 MDKRFSERDATPEGGCSVAFIESLSKFMG--------------------FEK-------- 2761
            +     + + T +G CS +F +SLS F+G                    FE         
Sbjct: 954  VQSLLLKHNGTLDGICSESFRKSLSSFLGDQAKRLECLMKLVDGVEVENFENIKNVEGLT 1013

Query: 2762 --GTFSEKAAQNISGVTSKQLQVFLNTCISRYHSKRIEXXXXXXXXXXXXXXEPGTQMTL 2935
                 +EK AQ +SG+T KQL+VFL TC+ RY  KRIE              EPGTQMTL
Sbjct: 1014 GISKNTEKIAQKVSGITEKQLEVFLKTCLDRYVWKRIEPGTAIGAIGAQSIGEPGTQMTL 1073

Query: 2936 KTFHFAGVASKNVTLGFPRVKEIVGGAKTISRPAITAPLECDDNEKAAQIVKGRIEKTVL 3115
            KTFHFAGVAS N+T G PR+KEI+ GAK IS P IT  LE + N  AA+I+KGRI+KTVL
Sbjct: 1074 KTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITVELEHNSNVNAARIIKGRIQKTVL 1133

Query: 3116 GQVAKSIKIVMTQRSGSVVVTLDLKRIEASQLCIDANVVKDAILQIPRIKSKQLNIKVLD 3295
            GQVAKSIKIVMT RS SV VTLD+K I  +QL +DAN+V++ IL+ P+IK K   I VL+
Sbjct: 1134 GQVAKSIKIVMTSRSASVKVTLDMKTIREAQLSLDANIVRELILETPKIKRKLQRINVLE 1193

Query: 3296 VKKLEIIPQVDRSKLHFELSTLKNVLPKTVVKGISTIERVLYQKEKV-KGKNREG---YQ 3463
              KLE+ P  DR+KLHFEL +LKN+LP  VVKGI T+ERV+  ++K+   +N +G   Y 
Sbjct: 1194 DGKLEVFPGGDRNKLHFELHSLKNMLPAVVVKGIKTVERVVIAQKKLDDAENDQGGPKYN 1253

Query: 3464 LFVEGTGLLAVMGTEGVDGLNTKSNFVKEMQDTLGIEAARKCIIDEIGDVMDKSGMSIDI 3643
            +FVEG GL AVMGTEGVDG  TKSN + E+Q+TLGIEAARKCIIDEI   M+  GMSIDI
Sbjct: 1254 MFVEGMGLQAVMGTEGVDGRKTKSNHIIEVQETLGIEAARKCIIDEIKGTMESHGMSIDI 1313

Query: 3644 RHMMLLADVMTFTGDALGINIFGLTKMKESVLMLASFEKTEYHLFNASVNGREDNIEGVS 3823
            RHMMLLADVMT  G  LGI  FG+ KM +SVLMLASFEKT  HLFNASV G++D IEGVS
Sbjct: 1314 RHMMLLADVMTSRGVVLGITRFGIQKMDKSVLMLASFEKTSDHLFNASVKGKDDKIEGVS 1373

Query: 3824 ECIIMGTPIQIGTGILKVKQ 3883
            ECIIMG P+ IGTG+LK++Q
Sbjct: 1374 ECIIMGIPVAIGTGVLKIQQ 1393


>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
            lycopersicum]
          Length = 1390

 Score = 1731 bits (4483), Expect = 0.0
 Identities = 887/1343 (66%), Positives = 1046/1343 (77%), Gaps = 35/1343 (2%)
 Frame = +2

Query: 2    KPIESGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCI 181
            KPI++GLLD RMGPPNK+G C TCHG+F +CPGHYGYL L LPVYNVGYL  + +ILKCI
Sbjct: 56   KPIQNGLLDPRMGPPNKSGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCI 115

Query: 182  CKSCSRILLAEIPRKDYLRRMRTQKIA-QKKTDMQKIIIKTCNTPG----LKNCSRCGYV 346
            CK CS ILL +  R+D L++MR  +    KK+++ K ++K CN          CS+CGY+
Sbjct: 116  CKCCSSILLDDKERRDILKKMRNPRTEFLKKSELHKRVVKRCNAMAGGQKTATCSKCGYM 175

Query: 347  NGIVKKATGMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKK 526
            NG+VKK    L I H++    ++ ++E   A+S  K + R SV++   + P  V SLFK 
Sbjct: 176  NGMVKKL--QLKITHEQG---NRILDEINVAISD-KRELRASVSVPPEIDPKVVYSLFKN 229

Query: 527  MLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLV-GGTRSNENDITERLKRIIQANAR 703
            M DEDCE+LYL+DRPEKL++TSI VPP  IRPSV V GGT+SNENDITERLKRIIQANA 
Sbjct: 230  MSDEDCELLYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANAS 289

Query: 704  VRTMLDGTN--RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFR 877
            +   +  ++  +S   W  LQ+EVAQYINS  +GVP  MQ PRPLSGF QRLKGKQGRFR
Sbjct: 290  LHQEMSDSSPVKSLNQWIDLQMEVAQYINSDVRGVPLQMQPPRPLSGFTQRLKGKQGRFR 349

Query: 878  QNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSN 1057
             NLS KRVE+TGRTVISPDPNLKITEV +PILMAQ LT+PERV+ HNIEKLRQCVRNG N
Sbjct: 350  GNLSGKRVEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPN 409

Query: 1058 KYPGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIM 1237
            KYPGAKF+  PDG+++SLMF  RKRYADELK GYIVDRHLEDGD+VLFNRQPSLHRMSIM
Sbjct: 410  KYPGAKFIRHPDGNEMSLMFSSRKRYADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIM 469

Query: 1238 SHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKN 1417
            SHRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPK+
Sbjct: 470  SHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKS 529

Query: 1418 GEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTG 1597
            GEILVASTQDFLTSSFLITRKDTFY+RA+FSL+CSYMGD MD  DLP+P   KP+ELWTG
Sbjct: 530  GEILVASTQDFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTG 589

Query: 1598 KQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLGKAT 1777
            KQLF VL+RP + +RVYVNLT+TEK+++    + +TMC +DGFVYFRNSELISGQLGKAT
Sbjct: 590  KQLFHVLLRPYSKMRVYVNLTLTEKSYS---GKGETMCSSDGFVYFRNSELISGQLGKAT 646

Query: 1778 LGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGESLSCQKT 1957
            LGNG+K+GL+S+LLRDY +HAAA+CMNRLAKLSARWIGNHGFSIGIDDV PGE+L  QK 
Sbjct: 647  LGNGNKDGLYSVLLRDYESHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQ 706

Query: 1958 DKINEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRITGQLNTIRETTGDVCMAELHWR 2137
             +I+  Y KC++ I  +++GKL +  GCDAAQTLE  +T  LN +R+  G +CM  L WR
Sbjct: 707  GEIHRNYKKCEDCITQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWR 766

Query: 2138 NSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFV 2317
            NSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDRSLPHFP  SK PAAKGFV
Sbjct: 767  NSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFV 826

Query: 2318 ANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMARRLMKALEDLSIQYDDTVRNAN 2497
            A+SF+ GL+ATEFFFHTMGGREGLVDTAVKTADTGYM+RRLMKALEDL++ YD TVRNA+
Sbjct: 827  AHSFFDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNAS 886

Query: 2498 GGIVQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATCPPARDHPFLSPEDIKQAMDKR 2677
              IVQF YGDDG+DP++ME K G PLNF R+FMKVKATCPP  +   LS  +I + +++R
Sbjct: 887  ACIVQFMYGDDGMDPSRMEEKKGRPLNFSRLFMKVKATCPPGGEKS-LSYSEICEIVNER 945

Query: 2678 FSERDATPEGGCSVAFIESLSKFM-----------------------GFEKGTFSEKAAQ 2788
             S  D TPEGGCS AF  SLS F+                       G ++G + EK   
Sbjct: 946  LSYHDMTPEGGCSEAFRASLSDFLIKSLAETLKNLRESLLLGEEQYEGDDRG-YLEKIVL 1004

Query: 2789 NISGVTSKQLQVFLNTCISRYHSKRIEXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASK 2968
            NISG+T KQLQVFLNTCISRYH KR+E              EPGTQMTLKTFHFAGVAS 
Sbjct: 1005 NISGITKKQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 1064

Query: 2969 NVTLGFPRVKEIVGGAKTISRPAITAPLECDDNEKAAQIVKGRIEKTVLGQVAKSIKIVM 3148
            NVTLG PR+KEI+  AK I+ P ITA L    N  AA+++K RIEKT+LGQVAKS+KIV+
Sbjct: 1065 NVTLGVPRIKEIINAAKKITTPIITAKLLSAGNLTAARMIKARIEKTLLGQVAKSVKIVL 1124

Query: 3149 TQRSGSVVVTLDLKRIEASQLCIDANVVKDAILQIPRIKSKQLNIKVLDVKKLEIIPQVD 3328
              R  S+ ++LD++ I+ SQLCIDA  VK +ILQ  +IK K+  IKVL+ +KLE+ PQ +
Sbjct: 1125 ASRLASIAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVFPQAN 1184

Query: 3329 RSKLHFELSTLKNVLPKTVVKGISTIERVLYQKEKVKGKNR----EGYQLFVEGTGLLAV 3496
            + KLHFEL  LKN LP  VVKGI+T++R +  KE+ K +      E Y+L VEGTGLLAV
Sbjct: 1185 KDKLHFELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAV 1244

Query: 3497 MGTEGVDGLNTKSNFVKEMQDTLGIEAARKCIIDEIGDVMDKSGMSIDIRHMMLLADVMT 3676
            MG EGVDG  TKSN + E+Q TLGIEAAR  IIDEI   M   GM+ID+RHMMLLAD+MT
Sbjct: 1245 MGIEGVDGRYTKSNHIMEVQHTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMT 1304

Query: 3677 FTGDALGINIFGLTKMKESVLMLASFEKTEYHLFNASVNGREDNIEGVSECIIMGTPIQI 3856
            + G+ LGI   G+ KMK+SVLMLASFEKT  HLFNASVNGR+D IEGV+ECIIMG P+ I
Sbjct: 1305 YKGEVLGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTI 1364

Query: 3857 GTGILKVKQSVEQVHKLNYAIDP 3925
            GTG+ K++Q VE V +LNY  DP
Sbjct: 1365 GTGMFKLRQRVEHV-ELNYQPDP 1386


>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
            gi|557526635|gb|ESR37941.1| hypothetical protein
            CICLE_v10027681mg [Citrus clementina]
          Length = 1397

 Score = 1726 bits (4470), Expect = 0.0
 Identities = 904/1365 (66%), Positives = 1044/1365 (76%), Gaps = 55/1365 (4%)
 Frame = +2

Query: 5    PIESGLLDSRM---------------GPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYN 139
            PIE GLLD RM               GP NK+  CATCHG F+ CPGHYGYL L LPVYN
Sbjct: 61   PIEGGLLDPRMEKIIFLQRLFFHGFQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYN 120

Query: 140  VGYLNIIANILKCICKSCSRILLAEIPRKDYLRRMRTQKI-AQKKTDMQKIIIKTCNTPG 316
            VGYL+ I +ILKCICK CSR+LL E   KDYL++MR  K+ A +KTD+ K I+K C+T  
Sbjct: 121  VGYLSTILDILKCICKYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMA 180

Query: 317  LK--NCSRCGYVNGIVKKATGMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMV-Y 487
             K   C RCGY+NG+VKKA  +LGIIHDRSK+ + S++E  +A++H KE S+ +VN+  Y
Sbjct: 181  SKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE-SLQEFASAITHTKE-SKAAVNVATY 238

Query: 488  MLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDIT 667
            +L P  VL LFK+M D DCEVLYL++RPEKLIIT+IAVPP  IRPSV++ G++SNENDIT
Sbjct: 239  ILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDIT 298

Query: 668  ERLKRIIQANARVRTMLDGTN---RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSG 838
            ERLKRIIQ NA ++  L   N   +S   WE LQ+EVAQYINS  +GVP  MQ  RPLSG
Sbjct: 299  ERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSG 358

Query: 839  FVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHN 1018
            FVQRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEV +PI MA+ LT+PERV+ HN
Sbjct: 359  FVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHN 418

Query: 1019 IEKLRQCVRNGSNKYPGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVL 1198
            IEKLRQC++NG +KYPGA+ + +PDG+   L    R + A ELK G IVDRHLEDGDVVL
Sbjct: 419  IEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVL 478

Query: 1199 FNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALT 1378
            FNRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL 
Sbjct: 479  FNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALL 538

Query: 1379 LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLP 1558
            LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMC YMGDGMD VDLP
Sbjct: 539  LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLP 598

Query: 1559 TPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKRE--------KTMCP 1714
            TP I KP+ELWTGKQLFSVL+RP+A++RVYVNLTV EKT++    R         +TMCP
Sbjct: 599  TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 658

Query: 1715 NDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGN 1894
            NDGFVYFRNSELISGQLGKATLG                      CMNRLAKLSARWIGN
Sbjct: 659  NDGFVYFRNSELISGQLGKATLG----------------------CMNRLAKLSARWIGN 696

Query: 1895 HGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRIT 2074
            HGFSIGIDDVQP + LS +K   I+E Y  C+  IK Y++GKL+L  GCDAAQTLE  IT
Sbjct: 697  HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 756

Query: 2075 GQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGF 2254
              LN IRE  G  CM  L WRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPNGF
Sbjct: 757  DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 816

Query: 2255 IDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMAR 2434
            IDRSLPHFPR +K PAAKGFVANSFYSGL+ATEFFFHTMGGREGLVDTAVKTADTGYM+R
Sbjct: 817  IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 876

Query: 2435 RLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATC 2614
            RL+KALEDLSIQYD++VRNA G IVQF YGDDG+DPA MEGK G PLNFDR+ MKVKATC
Sbjct: 877  RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATC 936

Query: 2615 PPARDHPFLSPEDIKQAMDKRFSERDATPEGGCSVAFIESLSKF---------------- 2746
            PPA    +LSP+ + + ++K+ +   A  +  CS AF+ SL KF                
Sbjct: 937  PPAGQR-YLSPQQVSEIVEKQLA---AYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVE 992

Query: 2747 -MGF-EKGTFSEKAAQNISGVTSKQLQVFLNTCISRYHSKRIEXXXXXXXXXXXXXXEPG 2920
             +G+ +K    E+     SG+T KQL+VF+ TC SRYH KR+E              EPG
Sbjct: 993  DIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPG 1052

Query: 2921 TQMTLKTFHFAGVASKNVTLGFPRVKEIVGGAKTISRPAITAPLECDDNEKAAQIVKGRI 3100
            TQMTLKTFHFAGVAS N+T G PR+KEI+ GAK IS P ITA LEC+DNE AA++VKGRI
Sbjct: 1053 TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRI 1112

Query: 3101 EKTVLGQVAKSIKIVMTQRSGSVVVTLDLKRIEASQLCIDANVVKDAILQIPRIKSKQLN 3280
            EKT+LGQVAKSIKIVMT R  S+V+ LD++ I+ + LCI+A++VK++I+Q P+IK KQ +
Sbjct: 1113 EKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQH 1172

Query: 3281 IKVLDVKKLEIIPQVDRSKLHFELSTLKNVLPKTVVKGISTIER-VLYQKEKVKGKNREG 3457
            IKVLD +KLEI P VD+SK+HFEL +LKNVLP  +VKGI T+ER V+ +KEK K K +E 
Sbjct: 1173 IKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKEN 1232

Query: 3458 -----YQLFVEGTGLLAVMGTEGVDGLNTKSNFVKEMQDTLGIEAARKCIIDEIGDVMDK 3622
                 Y+L VEGTGL AVMG EG+DG  TKSN + E+Q TLGIEAAR CIIDEI + M  
Sbjct: 1233 GEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKA 1292

Query: 3623 SGMSIDIRHMMLLADVMTFTGDALGINIFGLTKMKESVLMLASFEKTEYHLFNASVNGRE 3802
             GMSID RHMMLLAD+MTF G+ LGI  FG+ KM +SVLMLASFEKT  HLFNASVNGR+
Sbjct: 1293 HGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRD 1352

Query: 3803 DNIEGVSECIIMGTPIQIGTGILKVKQSVEQVHKLNY-AIDPTTS 3934
            D IEGVSECIIMG P+ +GTGILK++Q       L Y A DP  S
Sbjct: 1353 DRIEGVSECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPDPIMS 1397


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score = 1726 bits (4469), Expect = 0.0
 Identities = 893/1347 (66%), Positives = 1035/1347 (76%), Gaps = 43/1347 (3%)
 Frame = +2

Query: 2    KPIESGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCI 181
            KPI+ GLLD RMGP NK   CATCH +F  CPGHYGY+ L LPV+NVGY   I  ILKCI
Sbjct: 57   KPIDGGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCI 116

Query: 182  CKSCSRILLAEIPRKDYLRRMRTQKI-AQKKTDMQKIIIKTCNTPGLKN----CSRCGYV 346
            CKSCSRILL E   KD+LR+MR  K+ A +K D+ K IIK C+T    N    CSRCGY+
Sbjct: 117  CKSCSRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYL 176

Query: 347  NGIVKKATGMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVY-MLTPAKVLSLFK 523
            NG VKKA  MLGI+H R++  D  V         + E  R   N+   +L P +VL LF+
Sbjct: 177  NGSVKKAVSMLGILHYRARSKDAGV---------VSEDLRAPYNVSNDILNPFRVLCLFQ 227

Query: 524  KMLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANAR 703
            +M DEDCE+L+L++RPEKLIIT++ VPP  IRPSV++ G++SNENDITERLKRIIQ NA 
Sbjct: 228  RMSDEDCELLFLSNRPEKLIITNVLVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNAS 287

Query: 704  VRTMLDGTN---RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRF 874
            V   L  +N   +    W+ LQ EVAQ INS  +G+P  MQ  +PL+GFVQRLKGKQGRF
Sbjct: 288  VSQELSTSNSQAKCLESWDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRF 347

Query: 875  RQNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGS 1054
            R NL  KRVEFTGRTVISPDPNLKITEV VPI MA+ LT+PERVT HNIEKLRQCV NG 
Sbjct: 348  RGNLCGKRVEFTGRTVISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGP 407

Query: 1055 NKYPGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSI 1234
            +KYPGA+ L   DGS  SLM  GRKR ADELK G IV+RHLEDGDVVLFNRQPSLHRMSI
Sbjct: 408  DKYPGARMLRHLDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSI 467

Query: 1235 MSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPK 1414
            M HR ++MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+ LMGVQNNLCTPK
Sbjct: 468  MCHRVRVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPK 527

Query: 1415 NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWT 1594
            NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMD VDLPTP + KPIELWT
Sbjct: 528  NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWT 587

Query: 1595 GKQLFSVLVRPNASLRVYVNLTVTEKTFTK---SWKREKTMCPNDGFVYFRNSELISGQL 1765
            GKQLFSVLVRP+AS++VY+NLTV EK+++K   + K  +TMCPNDGFVYFRNSELISGQ+
Sbjct: 588  GKQLFSVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQV 647

Query: 1766 GKATLGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGESLS 1945
            GKATLGNG+K+GL+S+LLRDY AHAAA CMNRLAKLSARWIGNHGFSIGIDDVQPG+ L 
Sbjct: 648  GKATLGNGNKDGLYSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLV 707

Query: 1946 CQKTDKINEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRITGQLNTIRETTGDVCMAE 2125
             +K   I EGY  CD+ I  ++ G L    GCDAAQ+LE +IT  LN IRE T +VCM  
Sbjct: 708  KKKQTTILEGYRDCDKQINLFNTGNLPPEAGCDAAQSLESKITQILNGIREATANVCMQN 767

Query: 2126 LHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNSKTPAA 2305
            LHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFIDRSLPHF R +KTPAA
Sbjct: 768  LHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAA 827

Query: 2306 KGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMARRLMKALEDLSIQYDDTV 2485
            KGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYM+RRL+KALEDLSI YD +V
Sbjct: 828  KGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSV 887

Query: 2486 RNANGGIVQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATCPPARDHPFLSPEDIKQA 2665
            RNA G IVQF YGDDG+DPAQMEGK G PLNF+R+F+K KATC P+  +  LSP +  + 
Sbjct: 888  RNAGGCIVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATC-PSDGNKILSPSEFSET 946

Query: 2666 MDKRFSERDATPEGGCSVAFIESLSKFM--------------------GFEKGTFS---- 2773
            ++ R S+ DA+PE GCS AF+ SL  F+                      +K   S    
Sbjct: 947  VEDRLSKDDASPECGCSPAFVGSLKIFLNKYVEAQKKSWGTLLADNESAVDKSIISSSDN 1006

Query: 2774 ------EKAAQNISGVTSKQLQVFLNTCISRYHSKRIEXXXXXXXXXXXXXXEPGTQMTL 2935
                   K  QNI+GVT +QLQVFL+TC+SRYH+K+IE              EPGTQMTL
Sbjct: 1007 DNIVIRNKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTL 1066

Query: 2936 KTFHFAGVASKNVTLGFPRVKEIVGGAKTISRPAITAPLECDDNEKAAQIVKGRIEKTVL 3115
            KTFHFAGVAS NVTLG PR+KEI+ GAK IS P +TA L  DDN   A++VK RIEKT L
Sbjct: 1067 KTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNL 1126

Query: 3116 GQVAKSIKIVMTQRSGSVVVTLDLKRIEASQLCIDANVVKDAILQIPRIKSKQLNIKVLD 3295
            GQ+AK I+IVM+ RS  + + LD+++I  ++L +DANVVK AIL  P++K K  +I VLD
Sbjct: 1127 GQIAKCIQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLD 1186

Query: 3296 VKKLEIIPQ-VDRSKLHFELSTLKNVLPKTVVKGISTIERVLYQKEKVKGKNREGYQLFV 3472
             +KL ++PQ  DR+KLHF L  LKN+LP  VVKGI T+ R + ++EK K +N + + L V
Sbjct: 1187 DRKLRVLPQDADRNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLV 1246

Query: 3473 EGTGLLAVMGTEGVDGLNTKSNFVKEMQDTLGIEAARKCIIDEIGDVMDKSGMSIDIRHM 3652
            EGTGL AVMGTEGVDG NTKSN + E+Q  LGIEAARKCII+EI   M+  GMSIDIRHM
Sbjct: 1247 EGTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHM 1306

Query: 3653 MLLADVMTFTGDALGINIFGLTKMKESVLMLASFEKTEYHLFNASVNGREDNIEGVSECI 3832
            MLL D+MTF G+ LGI  FG+ KM +SVLMLASFEKT  HLFNASVNGR+D IEGVSEC+
Sbjct: 1307 MLLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECV 1366

Query: 3833 IMGTPIQIGTGILKVKQSVEQVHKLNY 3913
            IMG P+ +GTG+LKV+Q V    +L Y
Sbjct: 1367 IMGIPMPLGTGMLKVRQRVSVPQQLPY 1393


>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
            max]
          Length = 1391

 Score = 1697 bits (4394), Expect = 0.0
 Identities = 882/1329 (66%), Positives = 1040/1329 (78%), Gaps = 32/1329 (2%)
 Frame = +2

Query: 2    KPIESGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCI 181
            KPI  GLLD RMGP NK+ +CATC G+F  CPGHYGYL L LPV+NVGYL+ I  ILKCI
Sbjct: 57   KPIHGGLLDPRMGPANKSLVCATCDGNFHDCPGHYGYLNLALPVFNVGYLSTIVEILKCI 116

Query: 182  CKSCSRILLAEIPRKDYLRRMRTQKIAQ-KKTDMQKI-IIKTCNTPGLKNCSRCGYVNGI 355
            CK C+RILL E  RK +L++MR+ K ++  K D  K+ +IK C+   + NC RCGY+NG 
Sbjct: 117  CKGCARILLDEDTRKKHLKKMRSSKKSELDKIDFVKVRVIKDCSK--VVNCPRCGYINGS 174

Query: 356  VKKATGMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVY-MLTPAKVLSLFKKML 532
            VKK    L IIHD SK  +  VEE  +A+S +K+ SR + N+   +L P +VLSLFK+ML
Sbjct: 175  VKKLPASLTIIHDCSKCRNYIVEELDSALSRMKD-SRATTNVSNRILNPFQVLSLFKRML 233

Query: 533  DEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRT 712
            DEDCE+LY+A+RPEKLI+T++ VPP  IRPSV++  + SNENDITERLK IIQANA +R 
Sbjct: 234  DEDCELLYVAERPEKLIMTNVVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQ 293

Query: 713  MLDGTNRSQT---DWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQN 883
             L  +  S      W+ LQ EVAQ+INS  +G+P +MQ  + L+GFVQRLKGK GRFR N
Sbjct: 294  ELQESTFSSKFLDGWDILQNEVAQFINSDVRGIPFYMQPTKQLAGFVQRLKGKHGRFRGN 353

Query: 884  LSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKY 1063
            LS KRVE+TGRTVISPDPNLKI+EV +PI MA+ LT+PERVT HNIEKLRQCVRNG +KY
Sbjct: 354  LSGKRVEYTGRTVISPDPNLKISEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKY 413

Query: 1064 PGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSH 1243
            PGA+ L    G   SL    RKR ADEL+IG IVDRHLEDGD+VLFNRQPSLHRMSIM H
Sbjct: 414  PGARMLRRDGGHSWSLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMCH 473

Query: 1244 RAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGE 1423
            RA+IMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTE+ARTEA+ LMGV+NNLCTPKNGE
Sbjct: 474  RARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVENNLCTPKNGE 533

Query: 1424 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQ 1603
            ILVASTQDFLTSSFLITRKDTFYDR+ FSL+CSY+GDGMD +DLPTP I KP+ELW+GKQ
Sbjct: 534  ILVASTQDFLTSSFLITRKDTFYDRSTFSLICSYIGDGMDPIDLPTPAIVKPVELWSGKQ 593

Query: 1604 LFSVLVRPNASLRVYVNLTVTEKTFTKSWKRE------KTMCPNDGFVYFRNSELISGQL 1765
            LFS+++RP+A++RVYVNLTV E+ +T+  K +      KT+CPNDGFVYFRNSELISGQ+
Sbjct: 594  LFSIILRPHANMRVYVNLTVKERNYTEDKKIKDKKIEWKTLCPNDGFVYFRNSELISGQV 653

Query: 1766 GKATLGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGESLS 1945
            GK TLGNG+K+GLFS+LLRDY AHAAASCMNRLAKLSARWIGNHGFSIGIDDVQP E L 
Sbjct: 654  GKVTLGNGNKDGLFSVLLRDYRAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILI 713

Query: 1946 CQKTDKINEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRITGQLNTIRETTGDVCMAE 2125
             +K + I+EGY +CD+ I+A++ GKLELL GCDAAQTLE RITG LN +R+T G VCM  
Sbjct: 714  NKKDETISEGYRECDKHIEAFNKGKLELLAGCDAAQTLETRITGVLNGLRDTAGKVCMQT 773

Query: 2126 LHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNSKTPAA 2305
            LHWRNSPLIMSQCGSKGS INISQM+ACVGQQSVGGRR PNGFIDRSLPHFPR SKTPAA
Sbjct: 774  LHWRNSPLIMSQCGSKGSSINISQMVACVGQQSVGGRRTPNGFIDRSLPHFPRKSKTPAA 833

Query: 2306 KGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMARRLMKALEDLSIQYDDTV 2485
            KGFVANSFYSGL+ATEFFFHTMGGREGLVDTAVKTADTGYM+R+LMK+LEDL + YD TV
Sbjct: 834  KGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRQLMKSLEDLFLHYDYTV 893

Query: 2486 RNANGGIVQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATCPPARDHPFLSPEDIKQA 2665
            RNA G IVQF YGDDG+DPA MEGK+G PLNF+R+F+K KA CP   D   LS  D+ + 
Sbjct: 894  RNAGGSIVQFCYGDDGMDPAGMEGKNGKPLNFERLFLKSKAICPNDEDDEILSSSDVSKV 953

Query: 2666 MDKRFSERDATP-------EGGCSVAFIESLSKFM---------GF--EKGTFSEKAAQN 2791
            + ++ SE D +        E G S  F+ESL  F+         GF  E     +K  Q 
Sbjct: 954  VHEKLSEFDMSRLAEKGVFEVGFSADFVESLQSFIKDNAKLTEEGFTDEHSQNLKKFGQR 1013

Query: 2792 ISGVTSKQLQVFLNTCISRYHSKRIEXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASKN 2971
            ISG+T KQL VFLN C+SRYHSK++E              EPGTQMTLKTFHFAGVAS N
Sbjct: 1014 ISGITRKQLDVFLNICLSRYHSKKMEAGAPVGATGAHSIGEPGTQMTLKTFHFAGVASMN 1073

Query: 2972 VTLGFPRVKEIVGGAKTISRPAITAPLECDDNEKAAQIVKGRIEKTVLGQVAKSIKIVMT 3151
            VTLG PRVKEI+ G K IS P ITA LE DDN   A+IVKGRIEKT LGQVAKSIK+VMT
Sbjct: 1074 VTLGVPRVKEIMNGNKKISTPIITAILERDDNANTARIVKGRIEKTNLGQVAKSIKVVMT 1133

Query: 3152 QRSGSVVVTLDLKRIEASQLCIDANVVKDAILQIPRIKSKQLNIKVLDVKKLEIIPQ-VD 3328
             RS SVV+TLD+KRI+ + L IDAN+VK++IL+  + K K  +IK+LD+KKLE++PQ VD
Sbjct: 1134 SRSASVVITLDMKRIQDAHLNIDANIVKESILRTKKTKLKPEHIKILDIKKLEVVPQDVD 1193

Query: 3329 RSKLHFELSTLKNVLPKTVVKGISTIERVLYQKEKVKGKNREGYQLFVEGTGLLAVMGTE 3508
            RSK+HF+L  LKN+LP  VVKGI T++RV+  K+       E ++L VEGTG   VMG E
Sbjct: 1194 RSKIHFQLHYLKNLLPTVVVKGIKTVDRVVISKD----TKAEKFRLLVEGTGFREVMGVE 1249

Query: 3509 GVDGLNTKSNFVKEMQDTLGIEAARKCIIDEIGDVM-DKSGMSIDIRHMMLLADVMTFTG 3685
            G+DG  T SN + E++DTLGIEAAR+ I+ EI   M D  GM+IDIRHMMLLAD+MT TG
Sbjct: 1250 GIDGRKTVSNHIHEVRDTLGIEAARESIVKEIKYTMVDTHGMNIDIRHMMLLADMMTATG 1309

Query: 3686 DALGINIFGLTKMKESVLMLASFEKTEYHLFNASVNGREDNIEGVSECIIMGTPIQIGTG 3865
              LGIN FG++KM +SVLMLASFE+T   LF ASV GR+D+I GVSE IIMG PIQIGTG
Sbjct: 1310 HILGINRFGISKMGKSVLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPIQIGTG 1369

Query: 3866 ILKVKQSVE 3892
            ++KVKQ ++
Sbjct: 1370 MIKVKQRLD 1378


>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
            communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
            polymerase III largest subunit, putative [Ricinus
            communis]
          Length = 1383

 Score = 1695 bits (4389), Expect = 0.0
 Identities = 893/1361 (65%), Positives = 1040/1361 (76%), Gaps = 50/1361 (3%)
 Frame = +2

Query: 2    KPIESGLLDSRMGPPNK-NGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKC 178
            KPI++GLLD R+GP  K +  C TC  DF +CPGH+GYL L LPV+NVGY++ I +ILKC
Sbjct: 26   KPIQAGLLDPRLGPATKQSSACETCGADFHECPGHFGYLNLVLPVFNVGYMSNILDILKC 85

Query: 179  ICKSCSRILLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKN---CSRCGYV 346
            ICKSCSRIL  E   K  L++MR  +I   +K+++ K I+K C++        C+RCG +
Sbjct: 86   ICKSCSRILYDEKLCKADLKKMRNPRIEHLRKSELVKKIVKKCSSMTSNKAVKCTRCGDM 145

Query: 347  NGIVKKATGMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMV-YMLTPAKVLSLFK 523
            NG+VKKA  +L IIHDR+K+ D  +EECR+A++H KE SR  +++  Y+LTP KVLSLFK
Sbjct: 146  NGMVKKAGSVLSIIHDRAKLVDGYLEECRSAIAHTKE-SRAPISLATYILTPVKVLSLFK 204

Query: 524  KMLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANAR 703
            ++ +EDCEVL L DRPEKLIIT+IAVPP  IRPSV   G +SNENDITERLK+IIQANA 
Sbjct: 205  RIPEEDCEVLGLYDRPEKLIITNIAVPPISIRPSVFTDGLQSNENDITERLKQIIQANAS 264

Query: 704  VRT-MLDG---TNRSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGR 871
            +R  +L+G    N+    W+ LQ  VA Y+NS  + VP +++  +PLSGFVQRLKGKQGR
Sbjct: 265  LRMELLEGRMSVNKYLDSWDGLQAAVALYMNSDVR-VPNNVEVGKPLSGFVQRLKGKQGR 323

Query: 872  FRQNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNG 1051
            FR NLS KRVEFTGRTVISPDPNLKITEV +PI MA+ L++PERV+ HNIEKLRQ V NG
Sbjct: 324  FRGNLSGKRVEFTGRTVISPDPNLKITEVAIPIHMARILSYPERVSHHNIEKLRQLVSNG 383

Query: 1052 SNKYPGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMS 1231
              KYPGA  + +PDGS   L+   RK  A+EL  G IVDRHLEDGDVVLFNRQPSLHRMS
Sbjct: 384  PQKYPGASTVRYPDGSSKRLIGSYRKTIAEELTFGCIVDRHLEDGDVVLFNRQPSLHRMS 443

Query: 1232 IMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGV-QNNLCT 1408
            IM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGV QNNLCT
Sbjct: 444  IMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVSQNNLCT 503

Query: 1409 PKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIEL 1588
            PKNGEILVASTQDFLTSSFLITR+DTFYDRAAFSLMCSYM DGMD +DLPTP I KPIEL
Sbjct: 504  PKNGEILVASTQDFLTSSFLITRRDTFYDRAAFSLMCSYMNDGMDLIDLPTPAILKPIEL 563

Query: 1589 WTGKQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKREK----TMCPNDGFVYFRNSELIS 1756
            WTGKQLFSVL+RPNA++RVYVNL V EK ++K  K +K    TMCPNDGFVY RNSELIS
Sbjct: 564  WTGKQLFSVLLRPNANVRVYVNLIVREKIYSKPKKGDKREKETMCPNDGFVYIRNSELIS 623

Query: 1757 GQLGKATLGNGDKNGLFSILLRDYNAHAAASCMNRLAKLS--ARWIGNHGFSIGIDDVQP 1930
            GQLGKATLGNG+K+GL+SILLRDYN HAAA+CMNRLAKL   ARWIGNHGFSIGIDDVQP
Sbjct: 624  GQLGKATLGNGNKDGLYSILLRDYNPHAAATCMNRLAKLRQVARWIGNHGFSIGIDDVQP 683

Query: 1931 GESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRITGQLNTIRETTGD 2110
            G+ L   K   I+ GY +CD+ I+ Y++GKL L  GCDA QTLE  IT +LN +RE  GD
Sbjct: 684  GKKLIDGKGKTISNGYQQCDKLIEQYNEGKLLLKPGCDATQTLESEITEKLNKLREEAGD 743

Query: 2111 VCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNS 2290
            VCM ELHWRNSPLIMSQCGSKGS INISQM+ACVGQQSVGGRRAP+GFIDRSLPHFPR S
Sbjct: 744  VCMKELHWRNSPLIMSQCGSKGSVINISQMVACVGQQSVGGRRAPDGFIDRSLPHFPRKS 803

Query: 2291 KTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMARRLMKALEDLSIQ 2470
            KTPAAKGFVANSFYSGL ATEFFFHTM GREGLVDTAVKTADTGYM+RRL+K LEDLSIQ
Sbjct: 804  KTPAAKGFVANSFYSGLMATEFFFHTMAGREGLVDTAVKTADTGYMSRRLIKGLEDLSIQ 863

Query: 2471 YDDTVRNANGGIVQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATCPPARDHPFLSPE 2650
            YD+TVRNA+G IVQF YGDDGLDPA MEGK GVPLN DR+F KVKATC P R+  +LSP 
Sbjct: 864  YDNTVRNASGCIVQFLYGDDGLDPASMEGKGGVPLNLDRLFSKVKATC-PVREEDYLSPL 922

Query: 2651 DIKQAMDKRFSERDATPEGGCSVAFIESLSKFMGFE------------------------ 2758
            DI   ++    + D    G CS AF +SL+ F+G                          
Sbjct: 923  DISDVVENLLLKHDMALGGICSEAFKKSLTSFLGSHAKRLESMMKLADGVEDPTSENIQT 982

Query: 2759 -----KGTFSEKAAQNISGVTSKQLQVFLNTCISRYHSKRIEXXXXXXXXXXXXXXEPGT 2923
                      E+ A  I GV+ +Q++VF+ TCI+RY  KR+E              EPGT
Sbjct: 983  GGIRGNSKIIERLAHKIFGVSERQIEVFVKTCINRYLWKRVEPGTAIGAIGAQSIGEPGT 1042

Query: 2924 QMTLKTFHFAGVASKNVTLGFPRVKEIVGGAKTISRPAITAPLECDDNEKAAQIVKGRIE 3103
            QMTLKTFHFAGVAS N+T G PR+KEI+ GAK IS P ITA LE + N  AA+I KGRI+
Sbjct: 1043 QMTLKTFHFAGVASMNITQGVPRIKEIINGAKKISTPIITAELEQNTNVTAARIAKGRIQ 1102

Query: 3104 KTVLGQVAKSIKIVMTQRSGSVVVTLDLKRIEASQLCIDANVVKDAILQIPRIKSKQLNI 3283
            KTVLGQVAKSIKIVMT RS SVV+TLD+K I+ +QL +DAN+VK+AIL+ PRIK K  +I
Sbjct: 1103 KTVLGQVAKSIKIVMTSRSASVVITLDMKTIQNAQLSLDANIVKEAILRTPRIKLKPQHI 1162

Query: 3284 KVLDVKKLEIIPQVDRSKLHFELSTLKNVLPKTVVKGISTIERVLYQKEKVKGKNRE--- 3454
            KVLD +KLE+IP  DR ++HFEL  LKN+LP  +V+GI T+ER +  ++K  GK  +   
Sbjct: 1163 KVLDTRKLEVIPLGDRERVHFELHNLKNLLPSIIVQGIKTVERAVIAQKKHDGKANDQEL 1222

Query: 3455 -GYQLFVEGTGLLAVMGTEGVDGLNTKSNFVKEMQDTLGIEAARKCIIDEIGDVMDKSGM 3631
              Y + VEG GL  VMGTEGVDG  T SN V E+Q  LGIEAARKCIIDEI   M+  GM
Sbjct: 1223 PTYNMLVEGMGLDLVMGTEGVDGCKTTSNHVMEVQKFLGIEAARKCIIDEINQTMEHHGM 1282

Query: 3632 SIDIRHMMLLADVMTFTGDALGINIFGLTKMKESVLMLASFEKTEYHLFNASVNGREDNI 3811
            SIDIRHMMLL D+MTF G+ LGI  FG+ KM +SVLMLASFEKT  HL++A+V GR+D I
Sbjct: 1283 SIDIRHMMLLGDLMTFKGEVLGITRFGIQKMDKSVLMLASFEKTADHLYHAAVFGRDDKI 1342

Query: 3812 EGVSECIIMGTPIQIGTGILKVKQSVEQVHKLNYAIDPTTS 3934
            EGVSECIIMG P+QIGTGILKV+Q V+    LNY  D   S
Sbjct: 1343 EGVSECIIMGIPMQIGTGILKVQQRVDPPPVLNYGSDSIIS 1383


>ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris]
            gi|561005141|gb|ESW04135.1| hypothetical protein
            PHAVU_011G070100g [Phaseolus vulgaris]
          Length = 1392

 Score = 1687 bits (4368), Expect = 0.0
 Identities = 877/1325 (66%), Positives = 1032/1325 (77%), Gaps = 28/1325 (2%)
 Frame = +2

Query: 2    KPIESGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCI 181
            KPI  GLLD RMGP NK+  CATCHG+F  CPGHYGYL L LPV+NVGYL  I  ILKCI
Sbjct: 57   KPIHGGLLDPRMGPANKSLGCATCHGNFHDCPGHYGYLNLALPVFNVGYLGSIVEILKCI 116

Query: 182  CKSCSRILLAEIPRKDYLRRMRTQKIAQ-KKTDMQKI-IIKTCNTPGLKNCSRCGYVNGI 355
            CK C+RILL E  RK +L++MR+ K ++  K D  K+ IIK C+   + NC RCGY+NG 
Sbjct: 117  CKGCARILLDEDTRKKHLKKMRSSKKSELDKMDFVKVRIIKDCSK--VVNCPRCGYINGS 174

Query: 356  VKKATGMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLD 535
            VKK    L I+HD SK  +  VEE  + +S IK+    +     +L P +VLSLF+KMLD
Sbjct: 175  VKKLPASLIIMHDCSKCKNNIVEELESTLSRIKDSKATANVSNRILNPFQVLSLFRKMLD 234

Query: 536  EDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTM 715
            EDCE+LY+A+RPEKLIIT+I VPP  IRPSV++  + SNENDITERLK IIQANA +R  
Sbjct: 235  EDCELLYVAERPEKLIITNIVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQE 294

Query: 716  LDGTNRSQT---DWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNL 886
            L  ++ S      WE LQ EVAQ+INS  +G+P +MQ+ + L+GFVQRLKGK GRFR NL
Sbjct: 295  LQESSVSSKFLDGWEILQNEVAQFINSEVRGIPFYMQSTKQLAGFVQRLKGKHGRFRGNL 354

Query: 887  SAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYP 1066
            S KRVE+TGRTVISPDPNLKI+EV +PILMA  LT+PERVT HNIEKLRQCVRNG +KYP
Sbjct: 355  SGKRVEYTGRTVISPDPNLKISEVAIPILMASILTYPERVTHHNIEKLRQCVRNGPDKYP 414

Query: 1067 GAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHR 1246
            GA+ L    G   SL    RKR ADEL+IG IVDRHLEDGD+VLFNRQPSLHRMSIMSHR
Sbjct: 415  GARMLRRDGGHSWSLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMSHR 474

Query: 1247 AKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEI 1426
            A+IMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTE+ARTEA+ LMGVQNNLCTPKNGEI
Sbjct: 475  ARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEI 534

Query: 1427 LVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQL 1606
            LVASTQDFLTSSFL+TRKDTFYDR+AF+ +C+++GDG+D +DLPTP I KP+ELW+GKQL
Sbjct: 535  LVASTQDFLTSSFLVTRKDTFYDRSAFTNICTFIGDGLDLIDLPTPAIVKPVELWSGKQL 594

Query: 1607 FSVLVRPNASLRVYVNLTVTEKTFTK--SWKRE-KTMCPNDGFVYFRNSELISGQLGKAT 1777
            FS+L+RP+A+ +VYVNLTV EKT+TK    KRE KT+CPNDGFVYFRN+ELISGQ+GK T
Sbjct: 595  FSLLLRPHANFKVYVNLTVKEKTYTKLDDKKRELKTLCPNDGFVYFRNTELISGQIGKVT 654

Query: 1778 LGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGESLSCQKT 1957
            LGNG+K+GLFS+LLRDY AHAAASCMNRLAKLSARWIGNHGFSIGIDDVQP E L  +K 
Sbjct: 655  LGNGNKDGLFSVLLRDYKAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILIKKKD 714

Query: 1958 DKINEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRITGQLNTIRETTGDVCMAELHWR 2137
            + ++EGY KCD  I+A++ GKLELL GCDA QTLE +ITG LN +R+  G VCM  LHWR
Sbjct: 715  ETLSEGYKKCDNHIQAFNKGKLELLAGCDAPQTLETQITGVLNGLRDMAGKVCMQTLHWR 774

Query: 2138 NSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFV 2317
            NSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPNGF+DRSLPHFP N+KTPAAKGFV
Sbjct: 775  NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFLDRSLPHFPLNAKTPAAKGFV 834

Query: 2318 ANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMARRLMKALEDLSIQYDDTVRNAN 2497
            ANSFYSGL+ATEFFFHTMGGREGLVDTAVKTADTGYM+R+LMK++EDL + YD TVRNA 
Sbjct: 835  ANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRQLMKSMEDLFLHYDYTVRNAG 894

Query: 2498 GGIVQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATCPPARDHPFLSPEDIKQAMDKR 2677
            G IVQF YGDDG+DP  MEGK+G PLNF+R+F+K KA CP   D   LS  D+ + + ++
Sbjct: 895  GSIVQFCYGDDGMDPGGMEGKNGKPLNFERLFLKSKAICPNKDDDEVLSSSDVCKVVQEK 954

Query: 2678 FSE-------RDATPEGGCSVAFIESLSKFM----GFEKGTFSE-------KAAQNISGV 2803
             SE            E G S  F++SL  F+       + TF++       K  + ISG+
Sbjct: 955  LSEFGVSREVEKGVLEVGFSADFVQSLQSFIKDNTKLTEETFTDDNSQILKKFGERISGI 1014

Query: 2804 TSKQLQVFLNTCISRYHSKRIEXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASKNVTLG 2983
            T  QL+VFLN C+SRYHSK+IE              EPGTQMTLKTFHFAGVAS NVTLG
Sbjct: 1015 TRAQLEVFLNICLSRYHSKKIEAGAPVGATGAHSIGEPGTQMTLKTFHFAGVASMNVTLG 1074

Query: 2984 FPRVKEIVGGAKTISRPAITAPLECDDNEKAAQIVKGRIEKTVLGQVAKSIKIVMTQRSG 3163
             PRVKEI+ G K IS P ITA LE  D    A+IVKGRIEKT LGQVAKSIK+V+T R  
Sbjct: 1075 VPRVKEIMNGNKKISTPIITAILERTDCANTARIVKGRIEKTNLGQVAKSIKVVVTSRLA 1134

Query: 3164 SVVVTLDLKRIEASQLCIDANVVKDAILQIPRIKSKQLNIKVLDVKKLEIIPQ-VDRSKL 3340
            SVV+TLD++RI+ + L IDAN+VK++ILQ  + K K  +IK+LDVKKL ++PQ  DRSKL
Sbjct: 1135 SVVITLDMERIQDAHLNIDANIVKESILQTKKAKLKPEHIKILDVKKLRVVPQDGDRSKL 1194

Query: 3341 HFELSTLKNVLPKTVVKGISTIERVLYQKEKVKGKNREGYQLFVEGTGLLAVMGTEGVDG 3520
            HF+L+ LKN+LP  VVKGI T +RV+  KE+ K    E ++L VEGTG   VMG EGVDG
Sbjct: 1195 HFQLNYLKNLLPSVVVKGIKTADRVVISKEEDKITKAEKFKLLVEGTGFREVMGVEGVDG 1254

Query: 3521 LNTKSNFVKEMQDTLGIEAARKCIIDEIGDVM-DKSGMSIDIRHMMLLADVMTFTGDALG 3697
              T SN + E++DTLGIEAAR+CI+ EI  VM D  GM+ID RHMMLLADVMT TG  LG
Sbjct: 1255 CKTVSNHIHEVRDTLGIEAARECIVKEIKYVMVDTHGMNIDTRHMMLLADVMTATGHILG 1314

Query: 3698 INIFGLTKMKESVLMLASFEKTEYHLFNASVNGREDNIEGVSECIIMGTPIQIGTGILKV 3877
            IN FG++KM +SVLMLASFE+T   LF ASV GR+D+I GVSE IIMG PI IGTG++KV
Sbjct: 1315 INRFGISKMGKSVLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPITIGTGMIKV 1374

Query: 3878 KQSVE 3892
            KQ +E
Sbjct: 1375 KQRLE 1379


>ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
            lyrata] gi|297310500|gb|EFH40924.1| hypothetical protein
            ARALYDRAFT_496142 [Arabidopsis lyrata subsp. lyrata]
          Length = 1376

 Score = 1673 bits (4332), Expect = 0.0
 Identities = 859/1326 (64%), Positives = 1018/1326 (76%), Gaps = 15/1326 (1%)
 Frame = +2

Query: 2    KPIESGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCI 181
            KP E+GLLD+RMGPPNK  IC TC G+F  CPGHYGYL L+LPVYNVG+ N I +ILKCI
Sbjct: 55   KPYENGLLDARMGPPNKKSICTTCDGNFQNCPGHYGYLKLDLPVYNVGFFNFILDILKCI 114

Query: 182  CKSCSRILLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKN---CSRCGYVN 349
            CK CS +LL E   +D+LR+MR  K+   KKT++ K ++K C+T   +    C +CGY+N
Sbjct: 115  CKRCSNMLLDEKLYEDHLRKMRNPKMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLN 174

Query: 350  GIVKKATGMLGI--IHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFK 523
            G+VKK    +GI   HDRSKI    V+EC++A+SH KE +R    + Y+L P  VL LFK
Sbjct: 175  GMVKKIAAQMGIGISHDRSKIHGGEVDECKSAISHTKESTRAINPLTYVLDPNLVLGLFK 234

Query: 524  KMLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANAR 703
             M D+DCE+LY+A RPE LI T + VPP  IRPSV++GGTRSNENDITERLK IIQ NA 
Sbjct: 235  GMSDKDCELLYIAHRPENLITTCMLVPPLSIRPSVMIGGTRSNENDITERLKLIIQNNAC 294

Query: 704  VRTMLDGTNRSQTD---WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRF 874
            +  +L     S  +   W+ +Q EVA+YINS  +GV  +     PLSG +QRLKGKQGRF
Sbjct: 295  LHRILSQPTTSPKNMQVWDTVQSEVAKYINSEVRGVQ-NQPEKTPLSGLLQRLKGKQGRF 353

Query: 875  RQNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGS 1054
            R NLS KRVE+TGRTVISPDPNLKITEVG+PILMA+ LTFPE V+ HNIEKLRQCVRNG 
Sbjct: 354  RANLSGKRVEYTGRTVISPDPNLKITEVGIPILMARILTFPECVSRHNIEKLRQCVRNGP 413

Query: 1055 NKYPGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSI 1234
            NKYPGA+ + +PDGS  +L+   RKR ADEL IG IVDRHLE+GD VLFNRQPSLHRMSI
Sbjct: 414  NKYPGARNVRYPDGSSRTLVGDYRKRIADELTIGCIVDRHLEEGDAVLFNRQPSLHRMSI 473

Query: 1235 MSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPK 1414
            M HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TLMGVQNNLCTPK
Sbjct: 474  MCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPK 533

Query: 1415 NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWT 1594
            NGEILVASTQDFLT+SFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPTPTI KPIELWT
Sbjct: 534  NGEILVASTQDFLTTSFLITRKDTFYDRAAFSLICSYMGDGMDAIDLPTPTILKPIELWT 593

Query: 1595 GKQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKR-EKTMCPNDGFVYFRNSELISGQLGK 1771
            GKQLFSVL+RPNAS+RVYV L V EK F K     ++TMC NDG+VYFRNSELISGQLGK
Sbjct: 594  GKQLFSVLLRPNASVRVYVTLNVKEKNFKKGEHGFDETMCVNDGWVYFRNSELISGQLGK 653

Query: 1772 ATLGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGESLSCQ 1951
            ATLGNG+K+GL+SILLRDYN+HAAA CMNRLAKLSARWIG HGFSIGIDDVQPGE L+ +
Sbjct: 654  ATLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELNKE 713

Query: 1952 KTDKINEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRITGQLNTIRETTGDVCMAELH 2131
            + D I  GY +C   I+ ++ G L+L  G D A++LE  ITG LNTIRE TG  CM+ LH
Sbjct: 714  RKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLH 773

Query: 2132 WRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNSKTPAAKG 2311
            WRNSPLIMSQCGSKGSPINISQM+ACVGQQ+V G RAP+GFIDRSLPHFPR SK+PAAKG
Sbjct: 774  WRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKG 833

Query: 2312 FVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMARRLMKALEDLSIQYDDTVRN 2491
            FVANSFYSGLTATEFFFHTMGGREGLVDTAVKTA TGYM+RRLMKALEDL + YD+TVRN
Sbjct: 834  FVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRN 893

Query: 2492 ANGGIVQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATCPPARDHPFLSPEDIKQAMD 2671
            A+G I+QF YGDDG+DPA MEGKDG PLNFDR+F+K++ATCPP   H +LS E++ Q  +
Sbjct: 894  ASGCILQFTYGDDGMDPALMEGKDGAPLNFDRLFLKIQATCPPRSHHNYLSSEELSQKFE 953

Query: 2672 KRFSERDATPEGGCSVAFIESLSKFMGF--EKGTFSEKAAQNISGVTSKQLQVFLNTCIS 2845
            +     D +    C+ AF++SL +F+     K   + +     SGVT KQL+VF+  C+S
Sbjct: 954  EELVRHDKSRV--CTDAFVKSLREFVSLLGVKSASTPQVLYKASGVTDKQLEVFVKICVS 1011

Query: 2846 RYHSKRIEXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASKNVTLGFPRVKEIVGGAKTI 3025
            RY  K+IE              EPGTQMTLKTFHFAGVAS N+T G PR+ EI+  +K I
Sbjct: 1012 RYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIINASKNI 1071

Query: 3026 SRPAITAPLECDDNEKAAQIVKGRIEKTVLGQVAKSIKIVMTQRSGSVVVTLDLKRIEAS 3205
            S P I+A LE      +A+ VKGRIEKT LGQVA+SI+++MT  S SV + LD K IE +
Sbjct: 1072 STPVISAELENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIILDNKIIEEA 1131

Query: 3206 QLCIDANVVKDAILQIPRIKSKQLNIKVLDVKKLEIIPQVDRSKLHFELSTLKNVLPKTV 3385
             L I    VK++IL+ PRIK    +I+VLD   L+I P VD+S+ HF L  LKNVLP  +
Sbjct: 1132 CLSISPWSVKNSILKTPRIKLNDNDIRVLDT-GLDITPVVDKSRTHFNLHNLKNVLPNII 1190

Query: 3386 VKGISTIERVLYQKEKVKGKNREG---YQLFVEGTGLLAVMGTEGVDGLNTKSNFVKEMQ 3556
            V GI T+ERV+  ++  K K  +G   ++LFVEGT LLAVMGT G++G  T SN V E+ 
Sbjct: 1191 VNGIKTVERVVVAEDMDKNKQIDGKTRWKLFVEGTNLLAVMGTPGINGRTTTSNNVVEVS 1250

Query: 3557 DTLGIEAARKCIIDEIGDVMDKSGMSIDIRHMMLLADVMTFTGDALGINIFGLTKMKESV 3736
             TLGIEAAR  IIDEIG VM   GMSIDIRHMMLLADVMT+ G+ LGI   G+ KM +SV
Sbjct: 1251 KTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKMDKSV 1310

Query: 3737 LMLASFEKTEYHLFNASVNGREDNIEGVSECIIMGTPIQIGTGILKVKQSVEQVHKLNYA 3916
            LM ASFE+T  HLF+A+++G+ DNIEGV+EC+IMG P+++GTGILKV Q  + + KL Y 
Sbjct: 1311 LMQASFERTGDHLFSAAISGKVDNIEGVTECVIMGIPMKLGTGILKVLQRTDDLPKLKYG 1370

Query: 3917 IDPTTS 3934
             DP  S
Sbjct: 1371 ADPIIS 1376


>ref|XP_006279465.1| hypothetical protein CARUB_v10025743mg [Capsella rubella]
            gi|482548169|gb|EOA12363.1| hypothetical protein
            CARUB_v10025743mg [Capsella rubella]
          Length = 1376

 Score = 1665 bits (4313), Expect = 0.0
 Identities = 856/1326 (64%), Positives = 1014/1326 (76%), Gaps = 15/1326 (1%)
 Frame = +2

Query: 2    KPIESGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCI 181
            KP E GLLD RMGPPNK  IC TC G+F  CPGHYGYL L+LPVYN+GY N I +ILKCI
Sbjct: 55   KPFEGGLLDPRMGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNIGYFNFILDILKCI 114

Query: 182  CKSCSRILLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKN---CSRCGYVN 349
            CK CS +LL E   +D+LR+MR  K+   KKT++ K ++K C+T   +    C +CGY+N
Sbjct: 115  CKCCSNMLLDEKLYEDHLRKMRNPKMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLN 174

Query: 350  GIVKKATGMLGI--IHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFK 523
            G+VKK    +GI   HDRSKI    V+E +AA+SHIKE ++    + Y+L P  VL LFK
Sbjct: 175  GMVKKIPAQMGIGISHDRSKIHGGEVDEFKAAISHIKESTQAINPLTYVLDPNVVLGLFK 234

Query: 524  KMLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANAR 703
             M D+DCE+LY+A RPE LIIT + VPP  IRPSV+VGG++SNEND++ RLK+IIQ NA 
Sbjct: 235  GMSDKDCELLYIAHRPENLIITCMLVPPLSIRPSVMVGGSQSNENDLSARLKQIIQDNAS 294

Query: 704  VRTMLDGTNRSQTD---WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRF 874
            +  +L     S  +   W+ +Q EVA+YINS  +GV     + +P+SG +QRLKGKQGRF
Sbjct: 295  LHRILSQPTTSAKNMQVWDTVQSEVAKYINSEVRGVQNQPDS-KPMSGILQRLKGKQGRF 353

Query: 875  RQNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGS 1054
            R NLS KRVE+TGRTVISPDPNLKITEVG+PILMA+ LTFPE V+ HNIEKLRQCVRNG 
Sbjct: 354  RANLSGKRVEYTGRTVISPDPNLKITEVGIPILMARILTFPECVSRHNIEKLRQCVRNGP 413

Query: 1055 NKYPGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSI 1234
            NKYPGA+ + +PDGS  +L+   RKR ADEL IG IVDRHLE+GD VLFNRQPSLHRMSI
Sbjct: 414  NKYPGARNVRYPDGSSRALVGDYRKRIADELAIGCIVDRHLEEGDAVLFNRQPSLHRMSI 473

Query: 1235 MSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPK 1414
            M HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TLMGVQNNLCTPK
Sbjct: 474  MCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPK 533

Query: 1415 NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWT 1594
            NGEILVASTQDFLTSSFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPTPT+ KPIELWT
Sbjct: 534  NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDAIDLPTPTVLKPIELWT 593

Query: 1595 GKQLFSVLVRPNASLRVYVNLTVTEKTFTK-SWKREKTMCPNDGFVYFRNSELISGQLGK 1771
            GKQ+FSVL+RPNAS+RVYV L V EK F K +   ++TMC NDG+VYFRNSELISGQLGK
Sbjct: 594  GKQIFSVLLRPNASVRVYVTLNVKEKNFKKGNHGFDETMCTNDGWVYFRNSELISGQLGK 653

Query: 1772 ATLGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGESLSCQ 1951
            ATLGNG+K+GL+SILLRDYN+HAAA CMNRLAKLSARWIG HGFSIGIDDVQPGE LS Q
Sbjct: 654  ATLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSRQ 713

Query: 1952 KTDKINEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRITGQLNTIRETTGDVCMAELH 2131
            + D I  GY  C   I+ ++ G L+L  G D A+TLE  ITG LNTIRE TG  CM  LH
Sbjct: 714  RKDAIQSGYDDCHSIIENFNRGNLQLKAGLDGAKTLEAGITGILNTIREDTGKACMDGLH 773

Query: 2132 WRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNSKTPAAKG 2311
            WRNSPLIMSQCGSKGSPINISQM+ACVGQQ+V G RAP+GFIDRSLPHFPR SK+PAAKG
Sbjct: 774  WRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKG 833

Query: 2312 FVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMARRLMKALEDLSIQYDDTVRN 2491
            FVANSFYSGLTATEFFFHTMGGREGLVDTAVKTA TGYM+RRLMKALEDL + YD+TVRN
Sbjct: 834  FVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRN 893

Query: 2492 ANGGIVQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATCPPARDHPFLSPEDIKQAMD 2671
            A+G I+QF YGDDG+DPA MEGKDG PLNF+R+F+K++ATCPP   H +LS E++ Q  +
Sbjct: 894  ASGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKIQATCPPRSHHNYLSSEELSQKFE 953

Query: 2672 KRFSERDATPEGGCSVAFIESLSKFMGF--EKGTFSEKAAQNISGVTSKQLQVFLNTCIS 2845
            +     D      C+ AF++SL  F+     K     +     SGVT KQL+VF+  C+S
Sbjct: 954  EELVRHDKNRV--CTDAFVKSLRDFVSLLGVKSASPPQVLYKASGVTDKQLEVFVKICVS 1011

Query: 2846 RYHSKRIEXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASKNVTLGFPRVKEIVGGAKTI 3025
            RY  K+IE              EPGTQMTLKTFHFAGVAS N+T G PR+ EI+  +K I
Sbjct: 1012 RYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIINASKNI 1071

Query: 3026 SRPAITAPLECDDNEKAAQIVKGRIEKTVLGQVAKSIKIVMTQRSGSVVVTLDLKRIEAS 3205
            S P I+A LE      +A+ VKGRIEKT LGQVA+SI+++MT  S SV + LD K IE +
Sbjct: 1072 STPVISAELENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIILDNKIIEEA 1131

Query: 3206 QLCIDANVVKDAILQIPRIKSKQLNIKVLDVKKLEIIPQVDRSKLHFELSTLKNVLPKTV 3385
             L I    VK++IL+ PRIK    +I+VLD   L+I P VD+S+ HF L  LKNVLP  +
Sbjct: 1132 CLSISPWSVKNSILKTPRIKLTDNDIRVLDT-GLDITPVVDKSRTHFNLHNLKNVLPSII 1190

Query: 3386 VKGISTIERVLYQKEKVKGKNREG---YQLFVEGTGLLAVMGTEGVDGLNTKSNFVKEMQ 3556
            V GI T+ERV+  ++  K K  +G   ++LFVEGT LLAVMGT G++G  T SN V E+ 
Sbjct: 1191 VNGIKTVERVVVAEDMDKNKQIDGKKRWKLFVEGTNLLAVMGTPGINGRTTTSNNVVEVS 1250

Query: 3557 DTLGIEAARKCIIDEIGDVMDKSGMSIDIRHMMLLADVMTFTGDALGINIFGLTKMKESV 3736
             TLGIEAAR  IIDEIG VM   GMSIDIRHMMLLADVMT+ G+ LGI   G+ KM +SV
Sbjct: 1251 KTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKMDKSV 1310

Query: 3737 LMLASFEKTEYHLFNASVNGREDNIEGVSECIIMGTPIQIGTGILKVKQSVEQVHKLNYA 3916
            LM ASFE+T  HLF+A+++G+ DNIEGV+EC+IMG P+++GTGILKV Q  + + KL Y 
Sbjct: 1311 LMQASFERTGDHLFSAAISGKVDNIEGVTECVIMGIPMKLGTGILKVLQRTDDLPKLKYG 1370

Query: 3917 IDPTTS 3934
             DP  S
Sbjct: 1371 ADPIIS 1376


>ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana]
            gi|332009886|gb|AED97269.1| nuclear RNA polymerase C1
            [Arabidopsis thaliana]
          Length = 1376

 Score = 1661 bits (4302), Expect = 0.0
 Identities = 853/1326 (64%), Positives = 1013/1326 (76%), Gaps = 15/1326 (1%)
 Frame = +2

Query: 2    KPIESGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCI 181
            KP E+GLLD RMGPPNK  IC TC G+F  CPGHYGYL L+LPVYNVGY N I +ILKCI
Sbjct: 55   KPYENGLLDPRMGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCI 114

Query: 182  CKSCSRILLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKN---CSRCGYVN 349
            CK CS +LL E   +D+LR+MR  ++   KKT++ K ++K C+T   +    C +CGY+N
Sbjct: 115  CKRCSNMLLDEKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLN 174

Query: 350  GIVKKATGM--LGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFK 523
            G+VKK      +GI HDRSKI    ++EC++A+SH K+ +     + Y+L P  VL LFK
Sbjct: 175  GMVKKIAAQFGIGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFK 234

Query: 524  KMLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANAR 703
            +M D+DCE+LY+A RPE LIIT + VPP  IRPSV++GG +SNEND+T RLK+II  NA 
Sbjct: 235  RMSDKDCELLYIAYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNAS 294

Query: 704  VRTMLDGTNRSQTD---WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRF 874
            +  +L     S  +   W+ +QIEVA+YINS  +G   +     PLSG +QRLKGK GRF
Sbjct: 295  LHKILSQPTSSPKNMQVWDTVQIEVARYINSEVRGCQ-NQPEEHPLSGILQRLKGKGGRF 353

Query: 875  RQNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGS 1054
            R NLS KRVEFTGRTVISPDPNLKITEVG+PILMAQ LTFPE V+ HNIEKLRQCVRNG 
Sbjct: 354  RANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGP 413

Query: 1055 NKYPGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSI 1234
            NKYPGA+ + +PDGS  +L+   RKR ADEL IG IVDRHL++GDVVLFNRQPSLHRMSI
Sbjct: 414  NKYPGARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSI 473

Query: 1235 MSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPK 1414
            M HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TLMGVQNNLCTPK
Sbjct: 474  MCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPK 533

Query: 1415 NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWT 1594
            NGEILVASTQDFLTSSFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPTPTI KPIELWT
Sbjct: 534  NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWT 593

Query: 1595 GKQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKR-EKTMCPNDGFVYFRNSELISGQLGK 1771
            GKQ+FSVL+RPNAS+RVYV L V EK F K     ++TMC NDG+VYFRNSELISGQLGK
Sbjct: 594  GKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLGK 653

Query: 1772 ATLGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGESLSCQ 1951
            ATLGNG+K+GL+SILLRDYN+HAAA CMNRLAKLSARWIG HGFSIGIDDVQPGE LS +
Sbjct: 654  ATLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKE 713

Query: 1952 KTDKINEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRITGQLNTIRETTGDVCMAELH 2131
            + D I  GY +C   I+ ++ G L+L  G D A++LE  ITG LNTIRE TG  CM+ LH
Sbjct: 714  RKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLH 773

Query: 2132 WRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNSKTPAAKG 2311
            WRNSPLIMSQCGSKGSPINISQM+ACVGQQ+V G RAP+GFIDRSLPHFPR SK+PAAKG
Sbjct: 774  WRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKG 833

Query: 2312 FVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMARRLMKALEDLSIQYDDTVRN 2491
            FVANSFYSGLTATEFFFHTMGGREGLVDTAVKTA TGYM+RRLMKALEDL + YD+TVRN
Sbjct: 834  FVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRN 893

Query: 2492 ANGGIVQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATCPPARDHPFLSPEDIKQAMD 2671
            A+G I+QF YGDDG+DPA MEGKDG PLNF+R+F+KV+ATCPP   H +LS E++ Q  +
Sbjct: 894  ASGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFE 953

Query: 2672 KRFSERDATPEGGCSVAFIESLSKFMGF--EKGTFSEKAAQNISGVTSKQLQVFLNTCIS 2845
            +     D +    C+ AF++SL +F+     K     +     SGVT KQL+VF+  C+ 
Sbjct: 954  EELVRHDKSRV--CTDAFVKSLREFVSLLGVKSASPPQVLYKASGVTDKQLEVFVKICVF 1011

Query: 2846 RYHSKRIEXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASKNVTLGFPRVKEIVGGAKTI 3025
            RY  K+IE              EPGTQMTLKTFHFAGVAS N+T G PR+ EI+  +K I
Sbjct: 1012 RYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIINASKNI 1071

Query: 3026 SRPAITAPLECDDNEKAAQIVKGRIEKTVLGQVAKSIKIVMTQRSGSVVVTLDLKRIEAS 3205
            S P I+A LE      +A+ VKGRIEKT LGQVA+SI+++MT  S SV + LD K IE +
Sbjct: 1072 STPVISAELENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIILDNKIIEEA 1131

Query: 3206 QLCIDANVVKDAILQIPRIKSKQLNIKVLDVKKLEIIPQVDRSKLHFELSTLKNVLPKTV 3385
             L I    VK++IL+ PRIK    +I+VLD   L+I P VD+S+ HF L  LKNVLP  +
Sbjct: 1132 CLSITPWSVKNSILKTPRIKLNDNDIRVLDT-GLDITPVVDKSRAHFNLHNLKNVLPNII 1190

Query: 3386 VKGISTIERVLYQKEKVKGKNREG---YQLFVEGTGLLAVMGTEGVDGLNTKSNFVKEMQ 3556
            V GI T+ERV+  ++  K K  +G   ++LFVEGT LLAVMGT G++G  T SN V E+ 
Sbjct: 1191 VNGIKTVERVVVAEDMDKSKQIDGKTKWKLFVEGTNLLAVMGTPGINGRTTTSNNVVEVS 1250

Query: 3557 DTLGIEAARKCIIDEIGDVMDKSGMSIDIRHMMLLADVMTFTGDALGINIFGLTKMKESV 3736
             TLGIEAAR  IIDEIG VM   GMSIDIRHMMLLADVMT+ G+ LGI   G+ KM +SV
Sbjct: 1251 KTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKMDKSV 1310

Query: 3737 LMLASFEKTEYHLFNASVNGREDNIEGVSECIIMGTPIQIGTGILKVKQSVEQVHKLNYA 3916
            LM ASFE+T  HLF+A+ +G+ DNIEGV+EC+IMG P+++GTGILKV Q  + + KL Y 
Sbjct: 1311 LMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTGILKVLQRTDDLPKLKYG 1370

Query: 3917 IDPTTS 3934
             DP  S
Sbjct: 1371 PDPIIS 1376


>ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutrema salsugineum]
            gi|557101978|gb|ESQ42341.1| hypothetical protein
            EUTSA_v10012446mg [Eutrema salsugineum]
          Length = 1375

 Score = 1659 bits (4296), Expect = 0.0
 Identities = 851/1329 (64%), Positives = 1021/1329 (76%), Gaps = 18/1329 (1%)
 Frame = +2

Query: 2    KPIESGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCI 181
            KP+E GLLD RMGPPNK  ICATCH DF  CPGH+GYL L+LPVYNVG+LN I +ILKCI
Sbjct: 55   KPVEGGLLDPRMGPPNKKSICATCHADFQNCPGHFGYLKLDLPVYNVGFLNYILDILKCI 114

Query: 182  CKSCSRILLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCN---TPGLKNCSRCGYVN 349
            CK CS IL+ E   +D+L++MR  K+   KKT++ K ++K C+   +  +  C  CGY+N
Sbjct: 115  CKRCSNILIDEKLYEDHLKKMRNPKMEPLKKTELAKAVVKKCSMMASQRIITCKNCGYLN 174

Query: 350  GIVKKAT---GMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVN-MVYMLTPAKVLSL 517
            G+VKK     G++GI HDRSKI    V+E ++A+SH +E S G++N + Y+L P  VL L
Sbjct: 175  GMVKKVAAQMGIIGISHDRSKIHGGEVDEFKSAISHTRE-STGAINPLTYVLDPNLVLGL 233

Query: 518  FKKMLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQAN 697
            FK M D+DCE+LY+A RPE L I  + VPP   RPSV +GGT+SNEND+TER+K+I+Q N
Sbjct: 234  FKGMSDKDCELLYIAHRPENLFIICMFVPPLPTRPSVRIGGTQSNENDLTERVKKILQDN 293

Query: 698  ARVRTMLDGTNRSQTD---WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQG 868
            A  + +L+    S  +   W+ +Q EVAQYINS  +G+P    + +PLSG +QRLKGKQG
Sbjct: 294  ASCKKILNQATTSPKNMQVWDTVQSEVAQYINSEVRGIPNQPDS-KPLSGILQRLKGKQG 352

Query: 869  RFRQNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRN 1048
            RFR NLS KRVE+TGRTVISPDPNLKITEVG+PILMA+ LTFPE V+ HNIEKLRQCVRN
Sbjct: 353  RFRANLSGKRVEYTGRTVISPDPNLKITEVGIPILMARILTFPECVSRHNIEKLRQCVRN 412

Query: 1049 GSNKYPGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRM 1228
            G NKYPGA+ + +PDGS  +L+   RKR ADEL IG IVDRHLE+GD VLFNRQPSLHRM
Sbjct: 413  GPNKYPGARSVRYPDGSSRTLVGDYRKRIADELTIGCIVDRHLEEGDAVLFNRQPSLHRM 472

Query: 1229 SIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCT 1408
            SIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TLMGVQNNLCT
Sbjct: 473  SIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCT 532

Query: 1409 PKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIEL 1588
            PKNGEILVASTQDFLTSS+LITRKDTFYDRAAFSL+CSYMGD MD +DLPTPTI KPIEL
Sbjct: 533  PKNGEILVASTQDFLTSSYLITRKDTFYDRAAFSLICSYMGDAMDAIDLPTPTILKPIEL 592

Query: 1589 WTGKQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLG 1768
            WTGKQ+FSVL+RPNAS+RVYV L V EK F K  K ++TMC NDG+VYFRNSELISGQLG
Sbjct: 593  WTGKQVFSVLLRPNASVRVYVTLNVKEKNFKKG-KYDETMCTNDGWVYFRNSELISGQLG 651

Query: 1769 KATLGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGESLSC 1948
            KATLGNG+K+GL+S+LLRDYN+HAAA CMNRLAKLSARWIG HGFS+GIDDVQPGE L  
Sbjct: 652  KATLGNGNKDGLYSVLLRDYNSHAAAVCMNRLAKLSARWIGIHGFSLGIDDVQPGEELRE 711

Query: 1949 QKTDKINEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRITGQLNTIRETTGDVCMAEL 2128
            ++   IN+GY  C   I+ +++G+L+L  G D A++LE  ITG LN IRE TG +CM  L
Sbjct: 712  EREKIINKGYEDCGLKIRDFNEGRLQLKAGLDTAKSLESDITGILNRIREATGKLCMEGL 771

Query: 2129 HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNSKTPAAK 2308
            HWRNSPLIMSQCGSKGSPINISQM+ACVGQQ+V G RAP+GFIDRSLPHFPR SKTP AK
Sbjct: 772  HWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKTPEAK 831

Query: 2309 GFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMARRLMKALEDLSIQYDDTVR 2488
            GFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTA TGYM+RRLMKALEDL + YD+TVR
Sbjct: 832  GFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVR 891

Query: 2489 NANGGIVQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATCPPARDHPFLSPEDIKQAM 2668
            NA+G I+QF YGDDG+DP  MEGKDG PLNFDR+F+K++ATCPP   H FLS E++ Q  
Sbjct: 892  NASGCILQFTYGDDGMDPVLMEGKDGAPLNFDRLFLKIQATCPPRSHHSFLSSEELLQKF 951

Query: 2669 DKRFSERDATPEGGCSVAFIESLSKFMGF--EKGTFSEKAAQNISGVTSKQLQVFLNTCI 2842
            ++     D +    C+ AF++SL +F+     + T   +     SGVT KQ++VF+  C+
Sbjct: 952  EEELVRHDTSRV--CTDAFVKSLREFLSLLGLRSTSPSQVFYKASGVTDKQIEVFVKICV 1009

Query: 2843 SRYHSKRIEXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASKNVTLGFPRVKEIVGGAKT 3022
            SRY  K IE              EPGTQMTLKTFHFAGVAS N+T G PR+ EI+  +K 
Sbjct: 1010 SRYREKTIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIINASKN 1069

Query: 3023 ISRPAITAPLECDDNEKAAQIVKGRIEKTVLGQVAKSIKIVMTQRSGSVVVTLDLKRIEA 3202
            IS P I+A LE      +A+ VKGRIEKT LGQVA+SI+++MT  S SV + LD KRIE 
Sbjct: 1070 ISTPVISAELENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIILDNKRIEE 1129

Query: 3203 SQLCIDANVVKDAILQIPRIKSKQLNIKVLDVKKLEIIPQVDRSKLHFELSTLKNVLPKT 3382
            + L I    VK +IL+ PRIK    NI++LD   L+I P  D+S +HF L  LKNVLP  
Sbjct: 1130 ACLSISPWSVKTSILKTPRIKLNDDNIRILD-SGLDITPVGDKSGIHFGLHNLKNVLPNI 1188

Query: 3383 VVKGISTIERVLY-----QKEKVKGKNREGYQLFVEGTGLLAVMGTEGVDGLNTKSNFVK 3547
            +V GI T+ERV+      +K+++ GK R  ++LFVEGT LLAVMGT G++G  T SN + 
Sbjct: 1189 IVNGIKTVERVVVAEDTDKKKQIDGKKR--WKLFVEGTNLLAVMGTPGINGRTTTSNNIV 1246

Query: 3548 EMQDTLGIEAARKCIIDEIGDVMDKSGMSIDIRHMMLLADVMTFTGDALGINIFGLTKMK 3727
            E+  TLGIEAAR  IIDEIG VM   GMSIDIRHMMLLADVMT+ G+ LGI   G+ KM 
Sbjct: 1247 EVSKTLGIEAARTTIIDEIGSVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKMD 1306

Query: 3728 ESVLMLASFEKTEYHLFNASVNGREDNIEGVSECIIMGTPIQIGTGILKVKQSVEQVHKL 3907
            +SVLM ASFE+T  HLF+A+V+G+ DNIEGV+EC+IMG P+++GTGILKV Q  + + KL
Sbjct: 1307 KSVLMQASFERTGDHLFSAAVSGKVDNIEGVTECVIMGIPMKLGTGILKVLQRTDDLPKL 1366

Query: 3908 NYAIDPTTS 3934
             Y  DP  S
Sbjct: 1367 KYGADPIIS 1375


>ref|XP_004505923.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Cicer arietinum]
          Length = 1399

 Score = 1646 bits (4262), Expect = 0.0
 Identities = 854/1344 (63%), Positives = 1022/1344 (76%), Gaps = 33/1344 (2%)
 Frame = +2

Query: 2    KPIESGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCI 181
            KP   GLLDSRMGP NK+ +CATCHG+F  C GHYGYLPL  PV+NVGYLN +  ILKCI
Sbjct: 57   KPEADGLLDSRMGPANKSLVCATCHGNFADCQGHYGYLPLVQPVFNVGYLNTMVKILKCI 116

Query: 182  CKSCSRILLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKNCSRCGYVNGIV 358
            CK C+ ILL E  RK YL++MR  K+ + +K  + + I+K   +     C RCGY+NGIV
Sbjct: 117  CKGCAGILLDEDTRKKYLKKMRNSKLDELQKIQLLESIMKRFRSAKFIKCQRCGYINGIV 176

Query: 359  KKATGMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDE 538
            K     L I+HD S   +  V E ++A+SH+KE    +      L P  V SLF KM DE
Sbjct: 177  KLTRSTLRIVHDCSHGKNDVVSELQSALSHMKEYRATNDLASRNLDPKSVHSLFTKMSDE 236

Query: 539  DCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTML 718
            DC +LYLA+RPEKLIIT+IAVPP VIRPSV++ G++SNENDITE+L++IIQANA +   L
Sbjct: 237  DCALLYLAERPEKLIITNIAVPPIVIRPSVIMDGSQSNENDITEKLRKIIQANAALHKEL 296

Query: 719  DGTNRSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKR 898
            + + + Q  +E LQ  VAQYINS  KG P  MQA +PL+GFVQR+KGKQGRFR NLS KR
Sbjct: 297  EESTKFQGGFEMLQFLVAQYINSDVKGGPYSMQASKPLTGFVQRIKGKQGRFRSNLSGKR 356

Query: 899  VEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKF 1078
            VE+TGRTVISPDPNLKITEV +PI MA+ LT+PERVT HNIEKLRQC+RNG +KYPGAK 
Sbjct: 357  VEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCLRNGPDKYPGAKL 416

Query: 1079 LAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIM 1258
            L    G+  +L    RKR ADEL+ G IVDRHLEDGDVVLFNRQPSLHRMS+M HRA+IM
Sbjct: 417  LRHAGGTTWNLKVSCRKRLADELRFGDIVDRHLEDGDVVLFNRQPSLHRMSMMCHRARIM 476

Query: 1259 PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVAS 1438
            PWRTLRFNESVCNPYNADFDGDEMN+HVPQTE+ARTEAL LM VQNNLCTPKNGEILVAS
Sbjct: 477  PWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALLLMTVQNNLCTPKNGEILVAS 536

Query: 1439 TQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVL 1618
            TQDFLTSSFLITRKDTFYDR+ FSL+CSYMGDGMD +DLPTP I KP+ELW+GKQLFS+L
Sbjct: 537  TQDFLTSSFLITRKDTFYDRSTFSLICSYMGDGMDPIDLPTPAIIKPVELWSGKQLFSIL 596

Query: 1619 VRPNASLRVYVNLTVTEKTFTKSW---KRE-KTMCPNDGFVYFRNSELISGQLGKATLGN 1786
            +RP+A++RVYVNLTV EKT        KRE KTMCPNDGFVYFRNSELISGQLGK TLGN
Sbjct: 597  LRPHANVRVYVNLTVKEKTHNAKLDDRKREMKTMCPNDGFVYFRNSELISGQLGKVTLGN 656

Query: 1787 GDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKI 1966
            G+K+GLFS+LLRDY AHAAASCMNRLAK SARWIGNHGFSIGIDDVQP E L  +K + I
Sbjct: 657  GNKDGLFSVLLRDYKAHAAASCMNRLAKFSARWIGNHGFSIGIDDVQPKEILIHRKKETI 716

Query: 1967 NEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSP 2146
              GYS+CD FI+A++ GKLEL  GCDAAQTLE +I  +LN++R+TT  VCM  LHWRNSP
Sbjct: 717  TTGYSECDGFIEAFNKGKLELAPGCDAAQTLEAKIFQKLNSLRDTTAKVCMQTLHWRNSP 776

Query: 2147 LIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANS 2326
            LIMSQCGSKGSPINI QM+ACVGQQSVGG RA NGF+DRSLPHF + +KTPA KGFVANS
Sbjct: 777  LIMSQCGSKGSPINICQMVACVGQQSVGGCRAANGFVDRSLPHFTKKAKTPADKGFVANS 836

Query: 2327 FYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGI 2506
            F++GL+ATEFFFHTMGGREGLVDTAVKTADTGYM+RRLMKALEDL + YD TVR+ NGGI
Sbjct: 837  FFTGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLFLHYDYTVRDTNGGI 896

Query: 2507 VQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATCPPARDHPFLSPEDIKQAMDKRFS- 2683
            VQF YGDDG+DP+ MEGK+G PLNFDR+F+K KA CP   D   LS  D+ + + K+ S 
Sbjct: 897  VQFCYGDDGMDPSGMEGKNGKPLNFDRLFLKSKAICPSDGDDIILSSSDVCEVIRKKLSE 956

Query: 2684 -------ERDATPEG-----GCSVAFIESLSKFMGFEKGTFSEKAAQN------------ 2791
                   E+DA+        G S  FI+SL  F+  +    +E  A+N            
Sbjct: 957  VGMSKLVEKDASENDIMSVVGFSDDFIKSLQAFVK-DNTKLTEAIAENDSKNLTNLKNFI 1015

Query: 2792 --ISGVTSKQLQVFLNTCISRYHSKRIEXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVAS 2965
              ISG++ +QL+VFL+ C+SRY  K+IE              EPGTQMTLKTFHFAGVAS
Sbjct: 1016 PRISGISRRQLEVFLDICLSRYRIKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVAS 1075

Query: 2966 KNVTLGFPRVKEIVGGAKTISRPAITAPLECDDNEKAAQIVKGRIEKTVLGQVAKSIKIV 3145
             NVTLG PR+ EI+ GAK I  P +TA LE DDN   A++VKGRIEKT LGQVAKSIK+V
Sbjct: 1076 MNVTLGVPRIIEIINGAKDIKTPIMTAILERDDNANTARMVKGRIEKTNLGQVAKSIKVV 1135

Query: 3146 MTQRSGSVVVTLDLKRIEASQLCIDANVVKDAILQIPRIKSKQLNIKVLDVKKLEIIPQV 3325
            MT RS +VV++LD++RI+ + L IDA+ VK++IL+  ++K K  N+KVLD+KKL++ P++
Sbjct: 1136 MTSRSATVVISLDMERIQDAHLNIDAHTVKESILRTAKLKLKAENVKVLDIKKLQVYPRL 1195

Query: 3326 D-RSKLHFELSTLKNVLPKTVVKGISTIERVLYQKEKVKGKNREGYQLFVEGTGLLAVMG 3502
              R+++HF+L+ LKN+LP  VVKG+ T+ER + + +K K K  E + L VEGTGL  V+G
Sbjct: 1196 SGRNEIHFQLNILKNLLPSVVVKGVKTVERAVLEIDK-KDKKVEKFALLVEGTGLQQVLG 1254

Query: 3503 TEGVDGLNTKSNFVKEMQDTLGIEAARKCIIDEIGDVMDKSGMSIDIRHMMLLADVMTFT 3682
             EGVDG  T+SN V EM + LGIEAAR  IID+I   M   GMSID+RH+MLLAD+MT  
Sbjct: 1255 IEGVDGRKTRSNHVMEMLNVLGIEAARSTIIDQIQYTMGSHGMSIDVRHIMLLADIMTVR 1314

Query: 3683 GDALGINIFGLTKMKESVLMLASFEKTEYHLFNASVNGREDNIEGVSECIIMGTPIQIGT 3862
            G  LG+   G+ KM  SVLMLASFE +  HLF+AS+ GR D IEGVS+CIIMG PI++GT
Sbjct: 1315 GQVLGMTRHGIQKMGRSVLMLASFESSTDHLFDASMRGRGDPIEGVSDCIIMGKPIRVGT 1374

Query: 3863 GILKVKQSVEQVHKLNYAIDPTTS 3934
            G++ +KQ ++    L   IDP  S
Sbjct: 1375 GMIDIKQRLDP-PVLPKGIDPILS 1397


>dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
          Length = 1383

 Score = 1646 bits (4262), Expect = 0.0
 Identities = 849/1333 (63%), Positives = 1010/1333 (75%), Gaps = 22/1333 (1%)
 Frame = +2

Query: 2    KPIESGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCI 181
            KP E+GLLD RMGPPNK  IC TC G+F  CPGHYGYL L+LPVYNVGY N I +ILKCI
Sbjct: 55   KPYENGLLDPRMGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCI 114

Query: 182  CKSCSRILLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKN---CSRCGYVN 349
            CK CS +LL E   +D+LR+MR  ++   KKT++ K ++K C+T   +    C +CGY+N
Sbjct: 115  CKRCSNMLLDEKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLN 174

Query: 350  GIVKKATGM--LGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFK 523
            G+VKK      +GI HDRSKI    ++EC++A+SH K+ +     + Y+L P  VL LFK
Sbjct: 175  GMVKKIAAQFGIGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFK 234

Query: 524  KMLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANAR 703
            +M D+DCE+LY+A RPE LIIT + VPP  IRPSV++GG +SNEND+T RLK+II  NA 
Sbjct: 235  RMSDKDCELLYIAYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNAS 294

Query: 704  VRTMLDGTNRSQTD---WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRF 874
            +  +L     S  +   W+ +QIEVA+YINS  +G   +     PLSG +QRLKGK GRF
Sbjct: 295  LHKILSQPTSSPKNMQVWDTVQIEVARYINSEVRGCQ-NQPEEHPLSGILQRLKGKGGRF 353

Query: 875  RQNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGS 1054
            R NLS KRVEFTGRTVISPDPNLKITEVG+PILMAQ LTFPE V+ HNIEKLRQCVRNG 
Sbjct: 354  RANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGP 413

Query: 1055 NKYPGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSI 1234
            NKYPGA+ + +PDGS  +L+   RKR ADEL IG IVDRHL++GDVVLFNRQPSLHRMSI
Sbjct: 414  NKYPGARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSI 473

Query: 1235 MSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPK 1414
            M HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TLMGVQNNLCTPK
Sbjct: 474  MCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPK 533

Query: 1415 NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWT 1594
            NGEILVASTQDFLTSSFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPTPTI KPIELWT
Sbjct: 534  NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWT 593

Query: 1595 GKQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKR-EKTMCPNDGFVYFRNSELISGQLGK 1771
            GKQ+FSVL+RPNAS+RVYV L V EK F K     ++TMC NDG+VYFRNSELISGQLGK
Sbjct: 594  GKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLGK 653

Query: 1772 ATLGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGESLSCQ 1951
            ATLGNG+K+GL+SILLRDYN+HAAA CMNRLAKLSARWIG HGFSIGIDDVQPGE LS +
Sbjct: 654  ATLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKE 713

Query: 1952 KTDKINEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRITGQLNTIRETTGDVCMAELH 2131
            + D I  GY +C   I+ ++ G L+L  G D A++LE  ITG LNTIRE TG  CM+ LH
Sbjct: 714  RKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLH 773

Query: 2132 WRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNSKTPAAKG 2311
            WRNSPLIMSQCGSKGSPINISQM+ACVGQQ+V G RAP+GFIDRSLPHFPR SK+PAAKG
Sbjct: 774  WRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKG 833

Query: 2312 FVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMARRLMKALEDLSIQYDDTVRN 2491
            FVANSFYSGLTATEFFFHTMGGREGLVDTAVKTA TGYM+RRLMKALEDL + YD+TVRN
Sbjct: 834  FVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRN 893

Query: 2492 ANGGIVQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATCPPARDHPFLSPEDIKQAMD 2671
            A+G I+QF YGDDG+DPA MEGKDG PLNF+R+F+KV+ATCPP   H +LS E++ Q  +
Sbjct: 894  ASGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFE 953

Query: 2672 KRFSERDATPEGGCSVAFIESLSKFMGF--EKGTFSEKAAQNISGVTSK-------QLQV 2824
            +     D +    C+ AF++SL +F+     K     +     SG   +        +QV
Sbjct: 954  EELVRHDKSRV--CTDAFVKSLREFVSLLGVKSASPPQVLYKASGQKYEILPLIYINMQV 1011

Query: 2825 FLNTCISRYHSKRIEXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASKNVTLGFPRVKEI 3004
            F+  C+ RY  K+IE              EPGTQMTLKTFHFAGVAS N+T G PR+ EI
Sbjct: 1012 FVKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEI 1071

Query: 3005 VGGAKTISRPAITAPLECDDNEKAAQIVKGRIEKTVLGQVAKSIKIVMTQRSGSVVVTLD 3184
            +  +K IS P I+A LE      +A+ VKGRIEKT LGQVA+SI+++MT  S SV + LD
Sbjct: 1072 INASKNISTPVISAELENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIILD 1131

Query: 3185 LKRIEASQLCIDANVVKDAILQIPRIKSKQLNIKVLDVKKLEIIPQVDRSKLHFELSTLK 3364
             K IE + L I    VK++IL+ PRIK    +I+VLD   L+I P VD+S+ HF L  LK
Sbjct: 1132 NKIIEEACLSITPWSVKNSILKTPRIKLNDNDIRVLDT-GLDITPVVDKSRAHFNLHNLK 1190

Query: 3365 NVLPKTVVKGISTIERVLYQKEKVKGKNREG---YQLFVEGTGLLAVMGTEGVDGLNTKS 3535
            NVLP  +V GI T+ERV+  ++  K K  +G   ++LFVEGT LLAVMGT G++G  T S
Sbjct: 1191 NVLPNIIVNGIKTVERVVVAEDMDKSKQIDGKTKWKLFVEGTNLLAVMGTPGINGRTTTS 1250

Query: 3536 NFVKEMQDTLGIEAARKCIIDEIGDVMDKSGMSIDIRHMMLLADVMTFTGDALGINIFGL 3715
            N V E+  TLGIEAAR  IIDEIG VM   GMSIDIRHMMLLADVMT+ G+ LGI   G+
Sbjct: 1251 NNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGI 1310

Query: 3716 TKMKESVLMLASFEKTEYHLFNASVNGREDNIEGVSECIIMGTPIQIGTGILKVKQSVEQ 3895
             KM +SVLM ASFE+T  HLF+A+ +G+ DNIEGV+EC+IMG P+++GTGILKV Q  + 
Sbjct: 1311 QKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTGILKVLQRTDD 1370

Query: 3896 VHKLNYAIDPTTS 3934
            + KL Y  DP  S
Sbjct: 1371 LPKLKYGPDPIIS 1383


>ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Fragaria vesca subsp. vesca]
          Length = 1390

 Score = 1634 bits (4231), Expect = 0.0
 Identities = 856/1345 (63%), Positives = 1017/1345 (75%), Gaps = 46/1345 (3%)
 Frame = +2

Query: 2    KPIESGLLDSRMGPPNKN-GICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKC 178
            KPI  GLLD+R+GP NK  G C TC    + CPGH+GYL L +PV+NVGYL+ + ++LKC
Sbjct: 58   KPIRGGLLDARLGPANKQCGDCETCGAKLSDCPGHFGYLVLAVPVFNVGYLSTVVDVLKC 117

Query: 179  ICKSCSRILLAEIPRKDYLRRMRTQKIAQKKTDMQKIIIKTCNTPGLKN----CSRCGYV 346
            ICKSCSRI+L +  R  +L  +R  K  + K+   K+I+K C +    N    C +CGY+
Sbjct: 118  ICKSCSRIILDDKSRSRFLNVVRDPK--KDKSVTMKLIVKKCTSMSSNNRSVKCPKCGYM 175

Query: 347  NGIVKKATGMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMV-YMLTPAKVLSLFK 523
            NG VK+A GML I+H        +V++ ++ V+ + +  + S+N+  +ML P KV SLFK
Sbjct: 176  NGSVKRAQGMLAIVHG-------AVDDFKS-VNPVMKDPKASINLQPHMLNPVKVFSLFK 227

Query: 524  KMLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANAR 703
            +MLDEDCE+L L  RPE LI+T+IAVPP  IRPSVLV G++SNENDITERLK+IIQ NA 
Sbjct: 228  RMLDEDCELLNLKSRPENLIMTTIAVPPIAIRPSVLVDGSQSNENDITERLKKIIQTNAC 287

Query: 704  VRTMLD--GTNRSQTDWEYLQIEVAQYINSAEKGVPAHMQA-PRPLSGFVQRLKGKQGRF 874
            V+  L    T R  ++WE LQ EVA YINS  +GVP HM A  +PL+G VQRLKGK GRF
Sbjct: 288  VQQDLSEGSTTRFLSNWEILQAEVALYINSDVRGVPYHMTANAKPLNGLVQRLKGKTGRF 347

Query: 875  RQNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGS 1054
            R NL  KRVE+TGRTVISPDPNLKITEVG+PI MAQ L++PERV+ HNIEKLR+CV NG 
Sbjct: 348  RGNLCGKRVEYTGRTVISPDPNLKITEVGIPIQMAQILSYPERVSDHNIEKLRRCVANGP 407

Query: 1055 NKYPGAKFLAFPDGSKVSLMFPGRKR--YADELKIGYIVDRHLEDGDVVLFNRQPSLHRM 1228
             KYPGA  L   +G + SL   G+KR  +AD LK G IVDRHLEDGD+VLFNRQPSLHRM
Sbjct: 408  FKYPGALVLKCQNGEEWSLK-AGQKRMSHADNLKPGDIVDRHLEDGDIVLFNRQPSLHRM 466

Query: 1229 SIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCT 1408
            SIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+ LMGVQNNLCT
Sbjct: 467  SIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAVMLMGVQNNLCT 526

Query: 1409 PKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIEL 1588
            PKNGEILVASTQDFLTSSFLITRKDTFYDRA+FSLMCSYMGDG +HVDLPTP + KPIEL
Sbjct: 527  PKNGEILVASTQDFLTSSFLITRKDTFYDRASFSLMCSYMGDGTEHVDLPTPAVVKPIEL 586

Query: 1589 WTGKQLFSVLVRPNASLRVYVNLTVTEKTF----TKSWKREKTMCPNDGFVYFRNSELIS 1756
            WTGKQL+SVLVRPN+++RVY+NLTV EK++    T+  +  + MCPNDGFVYFRNSEL+S
Sbjct: 587  WTGKQLYSVLVRPNSNVRVYLNLTVREKSYSNRKTEDGREIEAMCPNDGFVYFRNSELLS 646

Query: 1757 GQLGKATLGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGE 1936
            GQLGK TLGNG+K+GLFS+LLRDY AHAAASCMNR+AKLSARWIGNHGFSIGI DVQP +
Sbjct: 647  GQLGKGTLGNGNKDGLFSVLLRDYKAHAAASCMNRVAKLSARWIGNHGFSIGISDVQPSD 706

Query: 1937 SLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRITGQLNTIRETTGDVC 2116
             L  +K   I +GY KCD+ IK Y +G+L L  GCDAAQ+LE  IT  LN IR+ TG +C
Sbjct: 707  ILYGEKEKIIKKGYDKCDDQIKLYKEGQLRLAPGCDAAQSLESGITAVLNDIRDQTGKLC 766

Query: 2117 MAELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNSKT 2296
            M  LHWRNSPLIMSQCGSKGS INISQM+ACVGQQSVGGRRAPNGFIDRSLPHFPR   T
Sbjct: 767  MQTLHWRNSPLIMSQCGSKGSAINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKVNT 826

Query: 2297 PAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMARRLMKALEDLSIQYD 2476
            PAAKGFVA+SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYM+RRL K LEDLS+QYD
Sbjct: 827  PAAKGFVASSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLSKVLEDLSVQYD 886

Query: 2477 DTVRNANGGIVQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATCPPARDHPFLSPEDI 2656
             TVR ANGGIVQF YGDDG+DPA MEGK G PL+F R+F + KATC PA +   LSP+++
Sbjct: 887  KTVRAANGGIVQFCYGDDGMDPAMMEGKSGAPLDFYRLFFRAKATC-PAGESESLSPDEV 945

Query: 2657 KQAMDKRFSERDATPEGGCSVAFIESLSKFM--------------------GFE-KGTFS 2773
             + +  R SE+D TP+GGCS+ F  S+ +F+                    G+E K    
Sbjct: 946  SEIVRSRLSEQDMTPDGGCSMGFKSSIEQFLDEYVKALRKTQEAFLLNQSPGWEVKSATL 1005

Query: 2774 EKAAQNISGVTSKQLQVFLNTCISRYHSKRIEXXXXXXXXXXXXXXEPGTQMTLKTFHFA 2953
            +   QNISGVT +QL+VFL+TCISRYHSK+++              EPGTQMTLKTFHFA
Sbjct: 1006 QNIVQNISGVTPRQLKVFLDTCISRYHSKKVDAGTAIGVIGAQSIGEPGTQMTLKTFHFA 1065

Query: 2954 GVASKNVTLGFPRVKEIVGGAKTISRPAITAPLECDDNEKAAQIVKGRIEKTVLGQVAKS 3133
            GVAS NVTLG PR+KEI+ GAK I  P IT  LECD+N   A++V GRIEKT LGQVA+ 
Sbjct: 1066 GVASMNVTLGVPRIKEIINGAKNIHTPIITTVLECDNNPMIARMVAGRIEKTNLGQVAEC 1125

Query: 3134 IKIVMTQRSGSVVVTLDLKRIEASQLCIDANVVKDAILQIPRIKSKQLNIKVLDVKKLEI 3313
            I+IVM+ R+  V V LD+  I+ + L IDANVVK +IL  PRIK K  +I+V D + +E+
Sbjct: 1126 IEIVMSPRAAYVEVKLDMAVIQDAHLSIDANVVKQSILGTPRIKLKHEHIRVPDNQTVEV 1185

Query: 3314 -IPQVDRSKLHFELSTLKNVLPKTVVKGISTIERVLYQKEKVKGKNRE---------GYQ 3463
               + DR KLHF L  LK++LP  +V+GI TIERV+  +EKVK   ++          Y+
Sbjct: 1186 HSHEKDRRKLHFHLYYLKSILPNVIVRGIKTIERVVIDEEKVKRDKKDIDIKCGDEKKYK 1245

Query: 3464 LFVEGTGLLAVMGTEGVDGLNTKSNFVKEMQDTLGIEAARKCIIDEIGDVMDKSGMSIDI 3643
            LF EG GLLAVM T+GVDG  T SN + E+Q TLGIEAAR CII+EI   M   GM+ID 
Sbjct: 1246 LFAEGKGLLAVMSTKGVDGCKTTSNDIIEVQQTLGIEAARTCIIEEIKYTMKSHGMNIDD 1305

Query: 3644 RHMMLLADVMTFTGDALGINIFGLTKMKESVLMLASFEKTEYHLFNASVNGREDNIEGVS 3823
            RHMMLLADVMTF G  LGI  FG+ +M +SVLMLASFE+T+ HLFNASV G  D IEGVS
Sbjct: 1306 RHMMLLADVMTFRGLVLGITRFGVQQMGKSVLMLASFERTDDHLFNASVQGTVDKIEGVS 1365

Query: 3824 ECIIMGTPIQIGTGILKVKQSVEQV 3898
            E IIMG P+ IGTG+ K+KQ + ++
Sbjct: 1366 ESIIMGIPMPIGTGMFKIKQRLPEM 1390


>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
            gi|548832896|gb|ERM95665.1| hypothetical protein
            AMTR_s00023p00196820 [Amborella trichopoda]
          Length = 1383

 Score = 1631 bits (4224), Expect = 0.0
 Identities = 853/1342 (63%), Positives = 1004/1342 (74%), Gaps = 34/1342 (2%)
 Frame = +2

Query: 2    KPIESGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCI 181
            KP E G+LD+RMG   K+G CATC GDF  CPGH+GYL L LPV++VGY      +L+CI
Sbjct: 57   KPAEHGVLDTRMGFSTKSGSCATCFGDFQTCPGHFGYLKLALPVFHVGYFRTTIIVLQCI 116

Query: 182  CKSCSRILLAEIPRKDYLRRMRTQKIA-QKKTDMQKIIIKTCNTPGLKNCSRCGYVNGIV 358
            CKSC+RILL E  RK +L+++R  +    +K D  K +I  C    ++ C RCG  NG+V
Sbjct: 117  CKSCARILLFEEERKQFLKKIRNPRAELHQKNDFVKKVIDKCKR--VRICPRCGDYNGVV 174

Query: 359  KKATGMLGIIHDRSKIA-DKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLD 535
            KKA     I HDRSK   DK  +EC+ A+S  K  S    NMV  LTP + L+LF++M+D
Sbjct: 175  KKAGPTFRISHDRSKANYDKLTKECKTAISQTK-YSNSDFNMVENLTPQRALALFERMVD 233

Query: 536  EDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTM 715
            EDC++LYL DRPEKLIIT IAVPP  IRP+    G+R NEN++T +L  I+Q N    T+
Sbjct: 234  EDCDLLYLYDRPEKLIITHIAVPPAGIRPTYQ-SGSRLNENELTTKLWEIVQIN---HTL 289

Query: 716  LDGTNRSQTD------WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFR 877
            +D  N+          W  LQ+ VA YINS    +P + Q  +   G VQRLKGKQGRFR
Sbjct: 290  IDHVNKGNLPQYYMDTWVLLQVRVALYINSELPSLPLNYQPSKFEGGLVQRLKGKQGRFR 349

Query: 878  QNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSN 1057
             NL  KRV+FTGRTVISPDPNLKITEV +P LMAQ LT+ ERVT HNIEKLRQCVRNG  
Sbjct: 350  SNLEGKRVDFTGRTVISPDPNLKITEVAIPRLMAQILTYKERVTIHNIEKLRQCVRNGPV 409

Query: 1058 KYPGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIM 1237
            KYPGA F+    G  +SL +  +KR ADELK G  V+RHLEDG++VLFNRQPSLHRMSIM
Sbjct: 410  KYPGANFV-ISGGDTLSLRYGNKKRKADELKFGDFVERHLEDGEIVLFNRQPSLHRMSIM 468

Query: 1238 SHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKN 1417
             HRA++MPWRTLRFNESVCNPYNADFDGDEMN+HVPQTE+ARTEAL LMGVQ+NLCTPKN
Sbjct: 469  CHRARVMPWRTLRFNESVCNPYNADFDGDEMNIHVPQTEEARTEALMLMGVQHNLCTPKN 528

Query: 1418 GEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTG 1597
            GEILVASTQDFLTSS+LITRKDTFYDRA FSLMCSYMGDGM+++DLPTP + KP+ELWTG
Sbjct: 529  GEILVASTQDFLTSSYLITRKDTFYDRATFSLMCSYMGDGMENIDLPTPALLKPVELWTG 588

Query: 1598 KQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLGKAT 1777
            KQLFSVL+RP+A ++VYVNL++ EK ++K  +   TMC NDGFVY RNSELISGQLGKAT
Sbjct: 589  KQLFSVLIRPHAHMKVYVNLSLMEKNYSKGGE---TMCANDGFVYIRNSELISGQLGKAT 645

Query: 1778 LGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGESLSCQKT 1957
            LGNG+K+GLFS+LLRDYN+HAAASCMNRLAKLSARWIGNHGFSIGIDDV PG  L+ QK 
Sbjct: 646  LGNGNKDGLFSVLLRDYNSHAAASCMNRLAKLSARWIGNHGFSIGIDDVLPGSHLTKQKE 705

Query: 1958 DKINEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRITGQLNTIRETTGDVCMAELHWR 2137
            ++I  GYS CD FI AY  GKL L  GC+AAQTLE  IT  LN IR+    VCM ELHWR
Sbjct: 706  EQIKGGYSNCDAFIDAYDKGKLSLKPGCNAAQTLEAEITRVLNGIRDAAAKVCMEELHWR 765

Query: 2138 NSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFV 2317
            NSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRN KTPAAKGFV
Sbjct: 766  NSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFV 825

Query: 2318 ANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMARRLMKALEDLSIQYDDTVRNAN 2497
            ANSFY+GLTA EFFFHTMGGREGLVDTAVKTADTGY++RRL+K+LEDLS  YDDTVRN++
Sbjct: 826  ANSFYTGLTAAEFFFHTMGGREGLVDTAVKTADTGYLSRRLIKSLEDLSTHYDDTVRNSS 885

Query: 2498 GGIVQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATCPPARDHPFLSPEDIKQAMDKR 2677
            G I+QF YGDDG+DPA+MEGK GVPLN DR+FMK+KATC PA     LSP +I   ++ R
Sbjct: 886  GTIIQFSYGDDGMDPAKMEGKSGVPLNLDRLFMKIKATC-PASVSASLSPSEISTIVNDR 944

Query: 2678 FSERDATPEGGCSVAFIESLSKFMG-------------------FEKGTFS--EKAAQNI 2794
             S+ D TPE GCS+AF E LS F+                     +K  FS  E  A NI
Sbjct: 945  LSKHDMTPERGCSMAFKEELSNFIKKRMDAIKKTRNMLGLDEDCVDKEKFSGLEHVAANI 1004

Query: 2795 SGVTSKQLQVFLNTCISRYHSKRIEXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASKNV 2974
            SG++ +QL+VFL TCISRYH KRIE              EPGTQMTLKTFHFAGVAS N+
Sbjct: 1005 SGISRQQLRVFLETCISRYHLKRIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNI 1064

Query: 2975 TLGFPRVKEIVGGAKTISRPAITAPLECDDNEKAAQIVKGRIEKTVLGQVAKSIKIVMTQ 3154
            TLG PR+KEI+G +K IS P ITA L CD++EK+A+IVKGRIEKT+LG+VAK++KI +T 
Sbjct: 1065 TLGVPRIKEILGASKKISTPIITATLVCDNDEKSARIVKGRIEKTLLGEVAKTVKISVTP 1124

Query: 3155 RSGSVVVTLDLKRIEASQLCIDANVVKDAILQIPRIKSKQLNIKV-----LDVKKLEIIP 3319
               S+ +TLD+KRIEA Q+ IDA  V D+I +  + K  +  +KV     L  K   ++P
Sbjct: 1125 TQASINITLDMKRIEALQMAIDAKTVADSISENLKAKVSRTKLKVKPTFTLPDKLKILLP 1184

Query: 3320 QVDRSKLHFELSTLKNVLPKTVVKGISTIERVLYQKEKVKGKNREGYQLFVEGTGLLAVM 3499
            ++ R ++ + L  L+++LPK +VKGI T+ER +     VKGK      L VEGT LLAVM
Sbjct: 1185 EIGRKEVLYSLHLLQSLLPKIIVKGIPTVERAVI--NNVKGK----LNLLVEGTNLLAVM 1238

Query: 3500 GTEGVDGLNTKSNFVKEMQDTLGIEAARKCIIDEIGDVMDKSGMSIDIRHMMLLADVMTF 3679
            GT GVDG NT SN + E++ TLGIEAARK IIDEI   M   GMSID+RHMMLLAD+MTF
Sbjct: 1239 GTPGVDGRNTTSNHIVEVEGTLGIEAARKSIIDEIQYTMKSHGMSIDLRHMMLLADLMTF 1298

Query: 3680 TGDALGINIFGLTKMKESVLMLASFEKTEYHLFNASVNGREDNIEGVSECIIMGTPIQIG 3859
             G  LGI  FG+TKMKESVLMLASFE+T   LF+A+  GR D I GVSECIIMG P+QIG
Sbjct: 1299 RGLVLGIQRFGITKMKESVLMLASFERTADILFDATTRGRVDTIAGVSECIIMGVPMQIG 1358

Query: 3860 TGILKVKQSVEQVHKLNYAIDP 3925
            TGIL V+Q  EQ+ KL Y  DP
Sbjct: 1359 TGILSVQQRPEQLAKLTYGPDP 1380


>gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus guttatus]
          Length = 1394

 Score = 1631 bits (4223), Expect = 0.0
 Identities = 858/1359 (63%), Positives = 1021/1359 (75%), Gaps = 48/1359 (3%)
 Frame = +2

Query: 2    KPIESGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCI 181
            KPI++GLLD RMGP NK+ +C TC G F  CPGHYGYLPL LPVYNVG+   I +ILKCI
Sbjct: 55   KPIDNGLLDQRMGPANKSILCKTCGGKFVDCPGHYGYLPLALPVYNVGFFLTIIDILKCI 114

Query: 182  CKSCSRILLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNT-PGLKN---CSRCGYV 346
            CK+CSR+LLA+   + +L++MR  K    KK ++QK ++K CN+  G K    CSRCGY+
Sbjct: 115  CKNCSRVLLADKDHQVFLKQMRNPKCETLKKIEIQKRVVKKCNSLAGSKRAVKCSRCGYI 174

Query: 347  NGIVKKATGMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKK 526
            NG+VKKA   L I HDR+K+ D  ++E R+A++H K+  +G+  ++  + P     L + 
Sbjct: 175  NGMVKKAKEPLKIQHDRAKVVDNCLDERRSALAHTKD-IKGNPVVISTIDPKTAYHLLEN 233

Query: 527  MLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARV 706
            MLDEDCE+LYL DRPEKLI+T+I VPP  IRPSV      SNENDIT RLK+IIQ NA V
Sbjct: 234  MLDEDCELLYLHDRPEKLIVTNILVPPIAIRPSVFSTRAMSNENDITSRLKQIIQINAAV 293

Query: 707  -RTMLDGTNRSQT---DWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRF 874
             + M D +++SQ+   +W+ LQ+EVAQYINS  +    + +  +PLSGFVQRLKGKQGRF
Sbjct: 294  LQEMSDQSSQSQSLTNNWDSLQVEVAQYINSDVRVPLQYSENTKPLSGFVQRLKGKQGRF 353

Query: 875  RQNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGS 1054
            R NLS KRVEFTGRTVISPDPNLKI EV VPILMAQ L++PERV+ HNIE+LRQCVRNG 
Sbjct: 354  RGNLSGKRVEFTGRTVISPDPNLKINEVAVPILMAQILSYPERVSHHNIERLRQCVRNGP 413

Query: 1055 NKYPGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSI 1234
             KYPGAKF+  PDG+++SL    R R AD+LK GYIV RHL+DGD++LFNRQPSLHRMSI
Sbjct: 414  TKYPGAKFIKHPDGTEISLTGKIRHRAADDLKYGYIVCRHLQDGDIILFNRQPSLHRMSI 473

Query: 1235 MSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPK 1414
            MSHRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPK
Sbjct: 474  MSHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPK 533

Query: 1415 NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWT 1594
            NGEILVASTQDFLTSS+LITRKDTFYDRA+FSL+CSYMGD MD +DLPTP + KP+ELWT
Sbjct: 534  NGEILVASTQDFLTSSYLITRKDTFYDRASFSLICSYMGDAMDPIDLPTPALVKPVELWT 593

Query: 1595 GKQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLGKA 1774
            GKQLFS+L+RP+A +RVYVNLTV EK + KS +   TMCP DGFVY RNSELISGQLGKA
Sbjct: 594  GKQLFSILLRPHAKMRVYVNLTVAEKNYGKSGE---TMCPKDGFVYIRNSELISGQLGKA 650

Query: 1775 TLGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGESLSCQK 1954
            TLGNG K+GL+S+LLRDY+AHAAA+CMNRLAKLSARWIGNHGFSIGI+DVQPG  L+ +K
Sbjct: 651  TLGNGSKDGLYSVLLRDYSAHAAATCMNRLAKLSARWIGNHGFSIGINDVQPGIVLNKEK 710

Query: 1955 TDKINEGYSKCDEFIKAYSDGKLELLGGCDAAQTLEVRITGQLNTIRETTGDVCMAELHW 2134
               I++GY +C ++I +Y  G L+LL GC+ A+TLE  ITG LN IRE T +VCM  LHW
Sbjct: 711  KVTIDKGYGQCIDYIGSYKSGSLDLLPGCNNAETLEANITGTLNNIRERTANVCMNNLHW 770

Query: 2135 RNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGF 2314
            RNSPLIMSQC             ACVGQQSVGGRRAPNGF+DR+LPHF R +K P AKGF
Sbjct: 771  RNSPLIMSQCDG-----------ACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGF 819

Query: 2315 VANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMARRLMKALEDLSIQYDDTVRNA 2494
            V NSFY+GL+ATEFFFHTMGGREGLVDTAVKTADTGYM+RRLMKALEDLS+ YD TVRNA
Sbjct: 820  VQNSFYTGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDGTVRNA 879

Query: 2495 NGGIVQFRYGDDGLDPAQMEGKDGVPLNFDRVFMKVKATCPPARDHPFLSPEDIKQAMDK 2674
            +  IVQF YG D +DP QME K G+PLNF+R+FMK KATCP A +   LS E+I + MD+
Sbjct: 880  SVCIVQFVYGGDAMDPGQMEEKSGLPLNFERLFMKAKATCP-AVEQKSLSIEEIDKTMDE 938

Query: 2675 ----RFSERDATPEGGCSVAFIESLSKFMGFE---------------------------- 2758
                R SE  ATPEG  S AF  S +K  G E                            
Sbjct: 939  IIGDRLSESTATPEGESSQAFSASSNKEGGMETFDNSLRKFIQKKYPNSDLMLKLNGKEH 998

Query: 2759 ----KGTFSEKAAQNISGVTSKQLQVFLNTCISRYHSKRIEXXXXXXXXXXXXXXEPGTQ 2926
                KG + EK A NI GVT +QL VFL TCISRY  K+IE              EPGTQ
Sbjct: 999  SDEDKG-YLEKIASNICGVTRQQLMVFLETCISRYRLKKIEGGTAIGAIGAHSIGEPGTQ 1057

Query: 2927 MTLKTFHFAGVASKNVTLGFPRVKEIVGGAKTISRPAITAPLECDDNEKAAQIVKGRIEK 3106
            MTLKTFHFAGVAS NVTLG PR+KEI+  AK I+ P I+  L+ D+NE  A+IVKGRIEK
Sbjct: 1058 MTLKTFHFAGVASMNVTLGVPRIKEIINAAKKINTPIISTALQSDNNEIIAKIVKGRIEK 1117

Query: 3107 TVLGQVAKSIKIVMTQRSGSVVVTLDLKRIEASQLCIDANVVKDAILQIPRIKSKQLNIK 3286
            T+L QVAKSIK     RS S+V+TLD+ +I+ + L +DA  VK++IL+  R+K K+  +K
Sbjct: 1118 TLLEQVAKSIKTSQASRSTSIVITLDMTKIQGAHLSVDAYTVKESILKTKRMKLKEQQVK 1177

Query: 3287 VLDVKKLEIIPQVDRSKLHFELSTLKNVLPKTVVKGISTIERVLY---QKEKVKGKNREG 3457
            VLD +KLEI+ Q D++KL FEL  LKN + K VVKGI T+ER +     KEK    N++ 
Sbjct: 1178 VLDHRKLEIVMQADKTKLQFELHGLKNKISKVVVKGIDTVERAIILNEAKEKDPSANKK- 1236

Query: 3458 YQLFVEGTGLLAVMGTEGVDGLNTKSNFVKEMQDTLGIEAARKCIIDEIGDVMDKSGMSI 3637
             +L VEGTGLL+VMG EGV+G  T SN + E+Q  LGIEAARK IIDEI   M   GM+I
Sbjct: 1237 MKLLVEGTGLLSVMGIEGVEGRKTTSNHIIEVQHILGIEAARKKIIDEIQYTMSSHGMTI 1296

Query: 3638 DIRHMMLLADVMTFTGDALGINIFGLTKMKESVLMLASFEKTEYHLFNASVNGREDNIEG 3817
            DIRHMMLLAD+MT  G+ LGI  +G+ KMK+SVLMLASFE+T  HLFNASVNGR D IEG
Sbjct: 1297 DIRHMMLLADLMTSKGEVLGITRYGVQKMKDSVLMLASFERTSDHLFNASVNGRVDKIEG 1356

Query: 3818 VSECIIMGTPIQIGTGILKVKQSVEQVHKLNYAIDPTTS 3934
            VSECIIMG P+QIGTG+LKV+Q+V+ + +L Y  DP  S
Sbjct: 1357 VSECIIMGIPVQIGTGMLKVRQNVKPI-ELTYGPDPIIS 1394