BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00008946
         (1943 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   134   1e-28
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...   133   3e-28
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta...   131   1e-27
ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein A...   128   8e-27
ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein A...   127   2e-26
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678...   127   2e-26
ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204...   124   2e-25
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...   121   1e-24
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   119   6e-24
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       118   8e-24
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           117   2e-23
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   116   4e-23
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   115   7e-23
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   114   1e-22
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   114   2e-22
ref|XP_004305958.1| PREDICTED: uncharacterized protein LOC101308...   112   5e-22
dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like ...   112   8e-22
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               112   8e-22
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ...   110   2e-21
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]           110   2e-21

>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  134 bits (337), Expect = 1e-28
 Identities = 89/324 (27%), Positives = 143/324 (44%), Gaps = 7/324 (2%)
 Frame = -3

Query: 1542 CLGKHIWFIVTKE*LIWVKWIWEVRLKSKSFWAVS-CPQDCPWHWRKILKIRWRFFGLGK 1366
            C  K +W IV+    +WVKW+ +  L++ SFW V        W W+K+LK R     L K
Sbjct: 886  CCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSK 945

Query: 1365 CCIGDGNKAFLWYDNWHPLGSSYGSISTRIIYDFASSLNAKVCSIISNGGWKWPSF*FNA 1186
              +G+G +   WYDNW  LG        R + D   S    V    +N   +        
Sbjct: 946  VEVGNGKQTSFWYDNWSDLGQLLERTGDRGLIDLGISRRMTVEEAWTNRRQRRHRNDVYN 1005

Query: 1185 VLEVINNCSVAPNVNVEDMYVWLPTNSTFFIQFA----WNCFRGPISKVDWARLVWYMGH 1018
            V+E     S       ED  +W   +  F   F+    W+  R   ++V W +++W+   
Sbjct: 1006 VIEDALKKSWDTRTETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHA 1065

Query: 1017 IPKVAFITWLAVRGGLATQDKLTQCRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQV 838
             PK +F +WLA  G L T D++       +  C+FC+  +E ++HLFF+C F + IW  +
Sbjct: 1066 TPKYSFCSWLAAHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIWVDL 1125

Query: 837  LWWSXXXXXXXXXXXXXXXLRVNTIGKSSKAE--VRKLAW*CSIYLVWFERNRRYYSYEF 664
               +               +   T  +  + E  +R+  +  +IY+VW ERN R +    
Sbjct: 1126 ---ARGIFKTQYTSHWQSIIEAITNSQHHRVEWFLRRYVFQATIYIVWRERNGRRHGEPP 1182

Query: 663  RPAWDLLDSIMTLVREKLASCSVK 592
              A  L+  I   +R +L+S  +K
Sbjct: 1183 NTASQLVGWIDKQIRNQLSSICLK 1206


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score =  133 bits (334), Expect = 3e-28
 Identities = 87/320 (27%), Positives = 145/320 (45%), Gaps = 5/320 (1%)
 Frame = -3

Query: 1548 KTCLGKHIWFIVTKE*LIWVKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGL 1372
            K C  K IW +++   L WV+W+ +  ++  SFW++        W WRK+LK R    G 
Sbjct: 104  KVCCLKLIWRLLSSSSL-WVQWLRQYVIRKGSFWSLRDTSTLGSWMWRKLLKYRHLASGF 162

Query: 1371 GKCCIGDGNKAFLWYDNWHPLGSSYGSISTRIIYDFASSLNAKVCSIISNGGWKWPSF*F 1192
             +  I +G     W+DNW PLG       TR   D    ++A V   +++   +  +   
Sbjct: 163  TQYEIRNGKGVSFWHDNWSPLGPLIAISGTRGCIDMGIDIHATVAEALTHRRRRHRADHL 222

Query: 1191 NAVLEVINNCSVAPNVNVEDMYVWLPTNSTFFIQFA----WNCFRGPISKVDWARLVWYM 1024
            N +   +        V  ED+ +W      F   F+    W   R    + +W + +W+ 
Sbjct: 223  NQMEAQLEELRTKGLVETEDVVLWKGKGGRFKPSFSTKETWADTREQKPRNEWYQGIWFS 282

Query: 1023 GHIPKVAFITWLAVRGGLATQDKLTQCRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWK 844
               PK +FITWLA +  L+T D++       ++SCVFC+   E +NHLFF+C +   +W 
Sbjct: 283  HATPKYSFITWLATKNRLSTGDRMMSWNAGVNLSCVFCQEQTETRNHLFFTCRYSREVWS 342

Query: 843  QVLWWSXXXXXXXXXXXXXXXLRVNTIGKSSKAEVRKLAW*CSIYLVWFERNRRYYSYEF 664
             +                   L   T+G +++  + + A+   +Y +W ERN R +  E 
Sbjct: 343  GLTSKLLTRHYSTDWTTILKLLTDKTLG-NNRLFLLRYAFQILVYSIWKERNSRRHGEEP 401

Query: 663  RPAWDLLDSIMTLVREKLAS 604
             P+  LL  +   VR KL++
Sbjct: 402  LPSALLLKRLDKEVRNKLST 421


>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1447

 Score =  131 bits (330), Expect = 1e-27
 Identities = 93/330 (28%), Positives = 142/330 (43%), Gaps = 13/330 (3%)
 Frame = -3

Query: 1542 CLGKHIWFIVTKE*LIWVKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLGK 1366
            C  K IW I++    +WVKWI    LK+ SFW +        W W+K+LK R       K
Sbjct: 1110 CCLKLIWRILSHGDSLWVKWIETNLLKNNSFWIIKSSTTMGSWMWKKLLKYREVAKTFSK 1169

Query: 1365 CCIGDGNKAFLWYDNWHPLGSSYGSISTRIIYDFASSLNAKVCSIISNGGWKWPSF*FNA 1186
              + +G +   WYD+W  +G     I  + I D     +  V  +      +     +  
Sbjct: 1170 IEVHNGQRTSFWYDDWSCMGRIMNFIGDKGIIDLGIKRDKLVAEVWDTHRSRRHITDYLN 1229

Query: 1185 VLEVINNCSVAPNVNVEDMYVWLPTNSTFFIQFA----WNCFRGPISKVDWARLVWYMGH 1018
             +E +   S A      D  VW   N  +  QF+    WN  R   +KV W + VW+   
Sbjct: 1230 QVENVIATSKANRKEKADDVVWRGRNDIYKPQFSTRDTWNNIRTTATKVTWYKGVWFYQA 1289

Query: 1017 IPKVAFITWLAVRGGLATQDKLTQCRILESMSCVFCRSLVEDKNHLFFSCDFIAPIW--- 847
             PK +F  WLA    L+T D++   + + S SCVFC    + ++HLFF+C + + +W   
Sbjct: 1290 TPKFSFCVWLAALDRLSTGDRMANWKGVSSGSCVFCNHPTKSRDHLFFNCPYSSEVWTVT 1349

Query: 846  -KQVLWWSXXXXXXXXXXXXXXXLRVNTIGKSSKAEVR----KLAW*CSIYLVWFERNRR 682
             K +L                  L +NT+    +  V     + A+  S+Y +W ERNRR
Sbjct: 1350 AKNIL---------TTRFTTDWHLLLNTVSSLQQNRVENFLVRYAFQASVYSIWSERNRR 1400

Query: 681  YYSYEFRPAWDLLDSIMTLVREKLASCSVK 592
             +      A  L+  I   VR  L+S  +K
Sbjct: 1401 RHGNTLHSATRLIGWIDKQVRNILSSIRIK 1430


>ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
            sativus]
          Length = 342

 Score =  128 bits (322), Expect = 8e-27
 Identities = 84/319 (26%), Positives = 137/319 (42%), Gaps = 2/319 (0%)
 Frame = -3

Query: 1533 KHIWFIVTKE*LIWVKWIWEVRLKSKSFWAVSCPQDCPWHWRKILKIRWRFFGLGKCCIG 1354
            K +W ++ K   +WV W+    LK +S W +    +                      +G
Sbjct: 57   KILWLLLVKSGSLWVSWVESYILKGRSLWEIDAGME----------------------VG 94

Query: 1353 DGNKAFLWYDNWHPLGSSYGSISTRIIYDFASSLNAKVCSIIS-NGGWKWPSF*FNAVLE 1177
            +G K  +W   W   G        R+IYD  S  + ++   +  NG W+W     + +  
Sbjct: 95   NGRKCRVWLVPWIQGGPIIQQFGERVIYDAGSRWDVRLVDFMGRNGDWRWSLVSLDLMDI 154

Query: 1176 VINNCSVAPNVNVEDMYVWLP-TNSTFFIQFAWNCFRGPISKVDWARLVWYMGHIPKVAF 1000
                  V P+ +VED +VW+P +  +F I  AW   R   S+V W+ L+W  G+IPK +F
Sbjct: 155  WDRVQGVRPSPSVEDRWVWVPGSRDSFSITSAWETIRPHSSRVGWSGLLWGGGNIPKHSF 214

Query: 999  ITWLAVRGGLATQDKLTQCRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQVLWWSXX 820
              WLA+R  L+T+D+L++      +SC+ C    E +NHLFF                  
Sbjct: 215  CAWLAIRDRLSTRDRLSRWDRSIPLSCLLCGGNYESRNHLFFLV-------------ILG 261

Query: 819  XXXXXXXXXXXXXLRVNTIGKSSKAEVRKLAW*CSIYLVWFERNRRYYSYEFRPAWDLLD 640
                         L  + IGKS + ++ +L W  +IY +W ERN R +    R       
Sbjct: 262  GRFGRGSFCLCHLLIESGIGKSVRRKLLRLLWCATIYFIWQERNHRLHGGAVREPM---- 317

Query: 639  SIMTLVREKLASCSVKVND 583
             +  L+R  + +C+   +D
Sbjct: 318  VVFQLIRSCIKACAASWSD 336


>ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
            sativus]
          Length = 288

 Score =  127 bits (319), Expect = 2e-26
 Identities = 74/235 (31%), Positives = 119/235 (50%), Gaps = 2/235 (0%)
 Frame = -3

Query: 1533 KHIWFIVTKE*LIWVKWIWEVRLKSKSFWAVSCPQDCPWHWRKILKIRWRFFGLGKCCIG 1354
            K +W ++ K   +WV W+    LK +S W +       W +R IL+ R       K  +G
Sbjct: 37   KILWLLLVKSCSLWVAWVEAYILKGRSLWEIDVGVGRSWCFRAILRKRDILKAHVKMEVG 96

Query: 1353 DGNKAFLWYDNWHPLGSSYGSISTRIIYDFASSLNAKVCSIIS-NGGWKWPSF*FNAVLE 1177
            +G K  +W D     G        R+IYD  S  +A++   +  +G W+W     + +  
Sbjct: 97   NGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDI 156

Query: 1176 VINNCSVAPNVNVEDMYVWLP-TNSTFFIQFAWNCFRGPISKVDWARLVWYMGHIPKVAF 1000
                  V P+ +VEDM+V +P ++ +F I  A    R   S+V W+ L+W  G+IPK +F
Sbjct: 157  WDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSF 216

Query: 999  ITWLAVRGGLATQDKLTQCRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQVL 835
             TWLA++  L T+D+L++      +SC+ C    E ++HLFF C F   IW ++L
Sbjct: 217  YTWLAIKDRLGTRDRLSRWDSSIPLSCILCGRNYESRDHLFFPCPFGWEIWSRIL 271


>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
            putative protein [Arabidopsis thaliana]
          Length = 473

 Score =  127 bits (318), Expect = 2e-26
 Identities = 91/296 (30%), Positives = 125/296 (42%), Gaps = 9/296 (3%)
 Frame = -3

Query: 1542 CLGKHIWFIVTKE*LIWVKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLGK 1366
            C  K IW I++    +WVKWI    LK  SFWAV        W WRKILK R     L K
Sbjct: 135  CCLKLIWRIISHADSLWVKWIQSSLLKKVSFWAVRENTSLGSWMWRKILKFRDIARTLCK 194

Query: 1365 CCIGDGNKAFLWYDNWHPLGSSYGSISTRIIYDFASSLNAKVCSIISNGGWKWPSF*FNA 1186
              I +G +   WYD+W  LG    S   R   D   + +A V     N   +     F  
Sbjct: 195  VEINNGARTSFWYDDWSDLGRLIDSAGDRGAIDLGINKHATVVEAWGNRRRRRHRTNFLN 254

Query: 1185 VLEVINNCSVAPNVNVEDMYVWLPTNSTFFIQFA----WNCFRGPISKVDWARLVWYMGH 1018
             +E     S       ED  +W    + F   F+    WN  R   +KV W + VW+   
Sbjct: 255  RVEERLILSWNSRNQAEDRALWKGKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVWFAQA 314

Query: 1017 IPKVAFITWLAVRGGLATQDKLTQCRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQV 838
            IPK AF  WLAV   L+T D++T   +    +C+ C   +E ++HLFFSC F   IW+ +
Sbjct: 315  IPKHAFCMWLAVHNRLSTGDRMTLWNMGVDATCILCNKALESRDHLFFSCPFATEIWEPL 374

Query: 837  LWWSXXXXXXXXXXXXXXXLRVNTIGKSSKAEVRKLAW*C----SIYLVWFERNRR 682
                                 +N + ++    +      C    +IY +W ERN R
Sbjct: 375  -----AKTIYNTCFYTDWQTIINNVSRNWPDRIAGFLARCILQVTIYTLWRERNER 425


>ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204314 [Cucumis sativus]
          Length = 282

 Score =  124 bits (311), Expect = 2e-25
 Identities = 75/254 (29%), Positives = 127/254 (50%), Gaps = 4/254 (1%)
 Frame = -3

Query: 1329 YDNWHPLGSSYGSISTRIIYDFASSLNAKVCSIIS-NGGWKWPSF*FNA--VLEVINNCS 1159
            Y    P+   +G    R+IYD  S  +A++   +  +G W+WP    +   + + +    
Sbjct: 33   YGGGGPIIQQFGE---RVIYDAGSRWDARLVDFMGRDGDWRWPLVYLDLMDIWDRVQGVR 89

Query: 1158 VAPNVNVEDMYVWLP-TNSTFFIQFAWNCFRGPISKVDWARLVWYMGHIPKVAFITWLAV 982
            ++P+V  ED +VW+P ++ +F I  AW   R   S+V W+ L+W  G+IPK +F  WLA+
Sbjct: 90   LSPSV--EDRWVWVPGSHDSFSITSAWETIRPHSSRVGWSGLLWGGGNIPKHSFCAWLAI 147

Query: 981  RGGLATQDKLTQCRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQVLWWSXXXXXXXX 802
            R  L T+ +L++      +SC+ C    E ++HLFFSC F   IW ++L           
Sbjct: 148  RDRLGTRGRLSRWDRSIPLSCLLCGGNYESRDHLFFSCHFGWEIWSRILLLKSSSHRTGY 207

Query: 801  XXXXXXXLRVNTIGKSSKAEVRKLAW*CSIYLVWFERNRRYYSYEFRPAWDLLDSIMTLV 622
                   +    IGKS + ++ +L W  +IY +W ERN R +    R    +   I + +
Sbjct: 208  WGVELSWIYNQGIGKSVRRKLWRLLWCATIYFIWQERNHRLHGGSIREPLVVFQLIRSCI 267

Query: 621  REKLASCSVKVNDI 580
            + + AS S  V+ +
Sbjct: 268  KVRAASWSDGVHGL 281


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  121 bits (304), Expect = 1e-24
 Identities = 84/319 (26%), Positives = 138/319 (43%), Gaps = 10/319 (3%)
 Frame = -3

Query: 1533 KHIWFIVTKE*LIWVKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLGKCCI 1357
            K IW + + +  +WVKW     LK +SFW+++       W W+K+LK R       +  +
Sbjct: 294  KLIWRVTSNDDSLWVKWSKMNLLKQESFWSLTPNSSLGSWMWKKMLKYRETAKPFSRVEV 353

Query: 1356 GDGNKAFLWYDNWHPLGSSYGSISTRIIYDFASSLNAKVCSIISNGGW-KWPSF*FNAVL 1180
             +G +   W+DNW  +G        R   D   S N  V    SN    K  +   N + 
Sbjct: 354  NNGARTSFWFDNWSGMGHLMDVTGQRGQIDLGISRNKTVAEAWSNRRRRKHRTEQLNDIE 413

Query: 1179 EVINNCSVAPNVNVEDMYVWLPTNSTFFIQFA----WNCFRGPISKVDWARLVWYMGHIP 1012
              +N      N+  ED  +W      F   F+    WN  R   ++V W + VW+    P
Sbjct: 414  AALNQKYQTRNLLREDATLWRGKGDVFKTSFSTKDTWNQVRKKSNEVAWYKGVWFSHSTP 473

Query: 1011 KVAFITWLAVRGGLATQDKLTQCRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQVLW 832
            K  F TWLA+R  L+T  ++        + C FC + +E ++HLFFSC + + IW  +  
Sbjct: 474  KYQFCTWLALRNRLSTGYRMQLWNNGSDVKCTFCSTSIETRDHLFFSCSYASAIWTAI-- 531

Query: 831  WSXXXXXXXXXXXXXXXLRVNTIGKSSKAEVR----KLAW*CSIYLVWFERNRRYYSYEF 664
                               VN I ++    +R    +  +  +++ VW ERN R +  E 
Sbjct: 532  ---AKNVLQHRFSTDWQTIVNYISETQTDRIRSFLSRYIFQLTVHTVWKERNDRRHGEEP 588

Query: 663  RPAWDLLDSIMTLVREKLA 607
            R + +L+  +   +R +L+
Sbjct: 589  RTSANLISWMDKQIRNQLS 607


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  119 bits (297), Expect = 6e-24
 Identities = 86/324 (26%), Positives = 137/324 (42%), Gaps = 10/324 (3%)
 Frame = -3

Query: 1533 KHIWFIVTKE*LIWVKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLGKCCI 1357
            K IW +++ +  +WVKW     LK +SFW++        W WR++LK R       K  +
Sbjct: 610  KLIWRLLSCQDSLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEV 669

Query: 1356 GDGNKAFLWYDNWHPLGSSYGSISTRIIYDFASSLNAKVCSIISNGGWKWPSF*F-NAVL 1180
             +G     W+DNW   G        R   D   S +  +    S    K       N   
Sbjct: 670  NNGVNTSFWFDNWSEKGPLINLTGARGAIDMGISRHMTLAEAWSRRRRKRHRVEILNEFE 729

Query: 1179 EVINNCSVAPNVNVEDMYVWLPTNSTFFIQFA----WNCFRGPISKVDWARLVWYMGHIP 1012
            E++       N+ +ED  +W      F  +F+    WN  R   ++  W + VW+    P
Sbjct: 730  EILLQKYQHRNIELEDAILWRGKEDVFKARFSTKDTWNHIRTSSNQRAWHKGVWFAHATP 789

Query: 1011 KVAFITWLAVRGGLATQDKLTQCRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQVLW 832
            K +F  WLA+R  L+T D++         +CVFC S +E ++HLFF C + + IW     
Sbjct: 790  KFSFCAWLAIRNRLSTGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQCCYSSEIWT---- 845

Query: 831  WSXXXXXXXXXXXXXXXLRVNTIGKSSKAEVR----KLAW*CSIYLVWFERNRRYYSYEF 664
             S                 VN I  S    ++    +  +  SI+ +W ERN R +  + 
Sbjct: 846  -SIAKNVYKDRFSTKWSAVVNYISDSQPDRIQSFLSRYTFQVSIHSIWRERNSRRHGEKS 904

Query: 663  RPAWDLLDSIMTLVREKLASCSVK 592
            R A +L+  I   +R +L++   K
Sbjct: 905  RSASNLIRQIDKTIRNQLSTIKKK 928


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  118 bits (296), Expect = 8e-24
 Identities = 79/250 (31%), Positives = 114/250 (45%), Gaps = 13/250 (5%)
 Frame = -3

Query: 1548 KTCLGKHIWFIVTKE*LIWVKWIWEVRLKSKSFWAVSCPQDCPWHWRKILKIRWRFFGLG 1369
            KT   + IW +   +  +W  W     L   SFWAV   Q   W W+++L +R       
Sbjct: 877  KTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFL 936

Query: 1368 KCCIGDGNKAFLWYDNWHPLGSSYGSISTRIIYDFASS-----LNAKVCSIISNGGWKWP 1204
             C +G+G KA  WYDNW  LG  +     RII D   S     L AKV S  S  GW+ P
Sbjct: 937  VCKVGNGLKADYWYDNWTSLGPLF-----RIIGDIGPSSLRVPLLAKVASAFSEDGWRLP 991

Query: 1203 SF*FNAVLEVINN--CSV-APNVNVEDM--YVWLPTN---STFFIQFAWNCFRGPISKVD 1048
                +A  + I++  C+V  P+   ED+  Y W         F     W   R   +   
Sbjct: 992  VS-RSAPAKGIHDHLCTVPVPSTAQEDVDRYEWSVNGFLCQGFSAAKTWEAIRPKATVKS 1050

Query: 1047 WARLVWYMGHIPKVAFITWLAVRGGLATQDKLTQCRILESMSCVFCRSLVEDKNHLFFSC 868
            WA  +W+ G +PK AF  W++    L T+ +L     ++S +CV C    E ++HL   C
Sbjct: 1051 WASSIWFKGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSDACVLCSFASESRDHLLLIC 1110

Query: 867  DFIAPIWKQV 838
            +F A +W+ V
Sbjct: 1111 EFSAQVWRLV 1120


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  117 bits (293), Expect = 2e-23
 Identities = 73/249 (29%), Positives = 107/249 (42%), Gaps = 12/249 (4%)
 Frame = -3

Query: 1548 KTCLGKHIWFIVTKE*LIWVKWIWEVRLKSKSFWAVSCPQDCPWHWRKILKIRWRFFGLG 1369
            KT L + IW +  ++  +W +W    RL   SFW V+  Q  PW W+ +L +R       
Sbjct: 737  KTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFI 796

Query: 1368 KCCIGDGNKAFLWYDNWHPLG------SSYGSISTRIIYDFASSLNAKVCSIISNGGWKW 1207
            K  +G+G     W+D W  LG         GS   RI +      +AKV   I   GW+ 
Sbjct: 797  KAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPF------SAKVADAIDGSGWRL 850

Query: 1206 P---SF*FNAVLEVINNCSVAPNVNVEDMYVWLPTN---STFFIQFAWNCFRGPISKVDW 1045
            P   S   +++L  + +      + V D Y W   +     F     W   R       W
Sbjct: 851  PLSRSLTADSILSHLASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEVLRPRRPVKRW 910

Query: 1044 ARLVWYMGHIPKVAFITWLAVRGGLATQDKLTQCRILESMSCVFCRSLVEDKNHLFFSCD 865
            AR VW+ G +PK AF  W A    L T+ +L    ++ S  C  C    E ++HL   CD
Sbjct: 911  ARSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCD 970

Query: 864  FIAPIWKQV 838
            F + +W+ V
Sbjct: 971  FSSQVWRMV 979


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  116 bits (290), Expect = 4e-23
 Identities = 72/249 (28%), Positives = 107/249 (42%), Gaps = 12/249 (4%)
 Frame = -3

Query: 1548 KTCLGKHIWFIVTKE*LIWVKWIWEVRLKSKSFWAVSCPQDCPWHWRKILKIRWRFFGLG 1369
            KT L + IW +  ++  +W +W    RL   SFW V+  Q  PW W+ +L +R       
Sbjct: 737  KTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFI 796

Query: 1368 KCCIGDGNKAFLWYDNWHPLG------SSYGSISTRIIYDFASSLNAKVCSIISNGGWKW 1207
            K  +G+G     W+D W  LG         GS   RI +      +AKV   I   GW+ 
Sbjct: 797  KAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPF------SAKVADAIDGSGWRL 850

Query: 1206 P---SF*FNAVLEVINNCSVAPNVNVEDMYVWLPTN---STFFIQFAWNCFRGPISKVDW 1045
            P   S   +++L  + +      + V D Y W   +     F     W   R       W
Sbjct: 851  PLSRSLTADSILSHLASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEVLRPRRPVKRW 910

Query: 1044 ARLVWYMGHIPKVAFITWLAVRGGLATQDKLTQCRILESMSCVFCRSLVEDKNHLFFSCD 865
            A+ VW+ G +PK AF  W A    L T+ +L    ++ S  C  C    E ++HL   CD
Sbjct: 911  AKSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCD 970

Query: 864  FIAPIWKQV 838
            F + +W+ V
Sbjct: 971  FSSQVWRMV 979


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  115 bits (288), Expect = 7e-23
 Identities = 77/320 (24%), Positives = 141/320 (44%), Gaps = 6/320 (1%)
 Frame = -3

Query: 1545 TCLGKHIWFIVTKE*LIWVKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLG 1369
            +CL K IW +++ +  +WV WIW   ++  +FW+ +       W W+K+LK R     + 
Sbjct: 1183 SCL-KLIWRLLSTQPSLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMH 1241

Query: 1368 KCCIGDGNKAFLWYDNWHPLGSSYGSISTRIIYDFASSLNAKVCSII-SNGGWKWPSF*F 1192
            K  + +G+    WYD+W  LG       TR + D    L   + +++ ++   +  +  +
Sbjct: 1242 KVEVRNGSSTSFWYDHWSHLGRLLDITGTRRVIDLGIPLETNLETVLRTHQHRQHRAAIY 1301

Query: 1191 NAVLEVINNCSVAPNVNVEDMYVWLPT----NSTFFIQFAWNCFRGPISKVDWARLVWYM 1024
            N +   I            D+ +W       N  F  +  WN  R    + +W + VW+ 
Sbjct: 1302 NRINAEIQRLQQQEREAGPDISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWFP 1361

Query: 1023 GHIPKVAFITWLAVRGGLATQDKLTQCRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWK 844
               PK +F+ WL V+  L+T D++      + ++C  C +  E ++HLFFSC + + +W+
Sbjct: 1362 YSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYVWE 1421

Query: 843  QVLWWSXXXXXXXXXXXXXXXLRVNTIGKSSKAEVRKLAW*CSIYLVWFERNRRYYSYEF 664
             +                   L  + + +      R + +  SIY +W ERN R +    
Sbjct: 1422 ALTQRLLSTNYSRDWNRLFTLLCTSNLPRDHLFLFRYV-FQASIYHIWRERNARRHGEIS 1480

Query: 663  RPAWDLLDSIMTLVREKLAS 604
             P   L+  I   VR +++S
Sbjct: 1481 SPTNRLIKLIDKTVRNRISS 1500


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  114 bits (286), Expect = 1e-22
 Identities = 68/234 (29%), Positives = 106/234 (45%), Gaps = 5/234 (2%)
 Frame = -3

Query: 1533 KHIWFIVTKE*LIWVKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLGKCCI 1357
            K IW I++    +WVKW+ +  ++ ++FW+V        W WRKILK R +     +  +
Sbjct: 1036 KLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEV 1095

Query: 1356 GDGNKAFLWYDNWHPLGSSYGSISTRIIYDFASSLNAKVCSIISNGGWKWPSF*FNAVLE 1177
              G     W+D+W PLG  +  + +R   D     NA V  +++    K     F   ++
Sbjct: 1096 RSGTFTSFWHDHWCPLGRLHQHMGSRGTIDLGIPNNATVAEVMNTHRRKRHRADFLNQIK 1155

Query: 1176 VINNCSVAPNVNVEDMYVWLPTNSTFFIQFA----WNCFRGPISKVDWARLVWYMGHIPK 1009
                 +        D  +W     TF   F+    W   R    + DW R VW+    PK
Sbjct: 1156 SQIELARQDRSTDGDRSLWKQKEDTFKSSFSSSKTWQQIRSISLRCDWYRGVWFSASTPK 1215

Query: 1008 VAFITWLAVRGGLATQDKLTQCRILESMSCVFCRSLVEDKNHLFFSCDFIAPIW 847
             +F+TWLA    L T DK+ +        CVFC   +E ++HLFFSC + + +W
Sbjct: 1216 YSFVTWLAFHNRLTTSDKICKWNSGARYDCVFCGEELETRDHLFFSCPYSSHVW 1269


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  114 bits (284), Expect = 2e-22
 Identities = 69/236 (29%), Positives = 104/236 (44%), Gaps = 7/236 (2%)
 Frame = -3

Query: 1548 KTCLGKHIWFIVTKE*LIWVKWIWEVRL-KSKSFWAVSCPQDCPWHWRKILKIRWRFFGL 1372
            +T   + IW + +    +WV W  +  L KS SFW         W+W+ +L++R      
Sbjct: 774  RTLYLRMIWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERF 833

Query: 1371 GKCCIGDGNKAFLWYDNWHPLGSSYGSISTRIIYDFASSLNAKVCSIISNGGWKWPSF*F 1192
             +C +G+G  A  W+DNW P G     +      D    LNAK+  + ++ GW       
Sbjct: 834  IRCNVGNGRDASFWFDNWTPFGPLIKFLGNEGPRDLRVHLNAKISDVCTSEGWSIADPRS 893

Query: 1191 NAVLEV---INNCSVAPNVNVEDMYVWLPTNST---FFIQFAWNCFRGPISKVDWARLVW 1030
            +  L +   + N S+  +    D Y W+  N     F     W+  R   + V WAR VW
Sbjct: 894  DQALSLHTHLTNISMPSDAQDLDSYDWVVDNKVCQGFSAAATWSALRPSSAPVPWARAVW 953

Query: 1029 YMGHIPKVAFITWLAVRGGLATQDKLTQCRILESMSCVFCRSLVEDKNHLFFSCDF 862
            + G  PK AF  W A    L T+ +L    +    +C  C    E ++HLF SCDF
Sbjct: 954  FKGATPKHAFHLWTAHLDRLPTKVRLASWGMQIDTTCGLCSLHPETRDHLFLSCDF 1009


>ref|XP_004305958.1| PREDICTED: uncharacterized protein LOC101308407 [Fragaria vesca
            subsp. vesca]
          Length = 177

 Score =  112 bits (281), Expect = 5e-22
 Identities = 62/175 (35%), Positives = 89/175 (50%), Gaps = 6/175 (3%)
 Frame = -3

Query: 1539 LGKHIWFIVTKE*LIWVKWIWEVRLKSKSFWAVSCPQDCPWHWRKILKIRWRFFGLGKCC 1360
            + +HI  ++T +  +W  WI    L+ KSFW VS PQ C W+WRK+LKIR       K  
Sbjct: 1    MARHIRILLTDDSSLWSSWIKVNFLRDKSFWMVSTPQICSWNWRKLLKIRDFIRPSIKHI 60

Query: 1359 IGDGNKAFLWYDNWHPLGSSYGSISTRIIYDFASSLNAKVCSIISNGGWKWPSF*FNAVL 1180
            IGDG   + W+D WHP G     +    + +     NA V SI+    W WP    +A+L
Sbjct: 61   IGDGKSTYFWHDYWHPFGPLLPRLGPGAMINSGIPSNALVSSIVKGESWCWPLSTNSAIL 120

Query: 1179 EVINNC-SVAPNVNVEDMYVWLPTNSTFF-----IQFAWNCFRGPISKVDWARLV 1033
             V +N   + PN + +D  +WLP+ S  F     +   W     P+  VDWA++V
Sbjct: 121  RVASNVEGLIPNSSCKDSCIWLPSTSGIFSTASTMDQIW--IHHPV--VDWAKIV 171


>dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana] gi|93007380|gb|ABE97193.1| hypothetical protein
            At5g13655 [Arabidopsis thaliana]
          Length = 385

 Score =  112 bits (279), Expect = 8e-22
 Identities = 69/244 (28%), Positives = 109/244 (44%), Gaps = 6/244 (2%)
 Frame = -3

Query: 1548 KTCLGKHIWFIVTKE*LIWVKWIWEVRLKSKSFWAVS-CPQDCPWHWRKILKIRWRFFGL 1372
            K C+ K IW I++ +  +WV W+ +  L+  S WAV        W W+K+LK R +    
Sbjct: 43   KVCMLKLIWRILSAKGSLWVDWVKKHLLRGGSLWAVKETSSRGSWIWKKLLKYRDKAKCF 102

Query: 1371 GKCCIGDGNKAFLWYDNWHPLGSSYGSISTRIIYDFASSLNAKVCS-IISNGGWKWPSF* 1195
             K  + +G     WYD+W  LG  Y     R   D     ++ + S I++    K     
Sbjct: 103  HKVDVRNGESTSFWYDSWSSLGCLYDKFGERGCIDMGIPKDSTLSSAIMTTRRRKHRQPL 162

Query: 1194 FNAVLEVINNCSVAPNVNVEDMYVWLPTNS----TFFIQFAWNCFRGPISKVDWARLVWY 1027
             NAV   I     +  V   D+ +W         TF  +  W+  R    ++   R +W+
Sbjct: 163  LNAVETEIQKQKQSRIVTERDVALWKGKEDGFHPTFLSKETWSQIRNTQPEMQGYRGIWF 222

Query: 1026 MGHIPKVAFITWLAVRGGLATQDKLTQCRILESMSCVFCRSLVEDKNHLFFSCDFIAPIW 847
                PK A +TWL VR  +AT +K+         SC+FC++  E + HLFF C +   +W
Sbjct: 223  SNATPKYALLTWLMVRNRIATGEKMGLWNQNTDTSCIFCKNPNETREHLFFQCVYTRKVW 282

Query: 846  KQVL 835
              ++
Sbjct: 283  NGLI 286


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  112 bits (279), Expect = 8e-22
 Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 7/240 (2%)
 Frame = -3

Query: 1545 TCLGKHIWFIVTKE*LIWVKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLG 1369
            +CL K +W I++    +W KW+ E  ++ KS W++        W WRKILKIR       
Sbjct: 533  SCL-KLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKSFS 591

Query: 1368 KCCIGDGNKAFLWYDNWHPLGSSYGSISTRIIYDFASSLNAKVCSIISNGGWKWPSF*FN 1189
            +  +G+G  A  WYD+W   G    ++  +   D      A V    +    +       
Sbjct: 592  RVEVGNGESASFWYDHWSAHGRLIDTVGDKGTIDLGIPREASVADAWTRRSRRRHRTSLL 651

Query: 1188 AVLEVINNCSVAPNVNVEDMYVWLPTNSTFFIQFA----WNCFRGPISKVDWARLVWYMG 1021
              +E +       + + ED  +W   N  F   F+    W+  +   S V W + VW+  
Sbjct: 652  NEIEEMMAYQRIHHSDAEDTVLWRGKNDVFKPHFSTRDTWHLIKATSSTVSWHKGVWFRH 711

Query: 1020 HIPKVAFITWLAVRGGLATQDKLTQCRILESMS--CVFCRSLVEDKNHLFFSCDFIAPIW 847
              PK A  TWLA+   L T D++ +     S+S  CV C +  +   HLFFSC + + +W
Sbjct: 712  ATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSCSYASTVW 771


>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 637

 Score =  110 bits (276), Expect = 2e-21
 Identities = 64/234 (27%), Positives = 108/234 (46%), Gaps = 5/234 (2%)
 Frame = -3

Query: 1533 KHIWFIVTKE*LIWVKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLGKCCI 1357
            K+   +V+ +  +WV+W+++  ++ ++FW+V        W W+KILK R +     +  +
Sbjct: 112  KYTVLVVSAKDSLWVQWVYKNLIRKETFWSVKENTSLGSWLWKKILKQRDKARLFHQMEV 171

Query: 1356 GDGNKAFLWYDNWHPLGSSYGSISTRIIYDFASSLNAKVCSIISNGGWKWPSF*FNAVLE 1177
              G     W+D+W PLG  +  + +R   D   +  A V  ++     K     F   +E
Sbjct: 172  RSGTTTSFWHDHWSPLGRLHQHLGSRGTIDLGIATQATVAEVLDTHRRKRHRADFLNQIE 231

Query: 1176 VINNCSVAPNVNVEDMYVWLPTNSTFFIQFA----WNCFRGPISKVDWARLVWYMGHIPK 1009
                          D  +W     +F   F+    W   R   ++ +W R VW+    PK
Sbjct: 232  NHIELVRQARSQESDRSLWKQKEDSFKGSFSSPKTWQQIRTISNECEWYRGVWFPSSTPK 291

Query: 1008 VAFITWLAVRGGLATQDKLTQCRILESMSCVFCRSLVEDKNHLFFSCDFIAPIW 847
             +F+TWLA    LAT D+L +       +CVFC   +E ++HLFFSC + + IW
Sbjct: 292  YSFVTWLAFHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSSQIW 345


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score =  110 bits (276), Expect = 2e-21
 Identities = 71/240 (29%), Positives = 110/240 (45%), Gaps = 6/240 (2%)
 Frame = -3

Query: 1548 KTCLGKHIWFIVTKE*LIWVKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGL 1372
            K  L K IW +++   L WV+W+    L+  SFW++S       W W+KILK R    G 
Sbjct: 140  KVSLLKLIWRMLSSTSL-WVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGF 198

Query: 1371 GKCCIGDGNKAFLWYDNWHPLGSSYGSISTRIIYDFASSLNAKVC-SIISNGGWKWPSF* 1195
             K  I +G+    W+DNW  +G        R   D   +L+A V  +++++   +     
Sbjct: 199  VKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDT 258

Query: 1194 FNAVLEVINNCSVAPNVNVEDMYVWLPTNSTFFIQF----AWNCFRGPISKVDWARLVWY 1027
               + +VI         + ED   W      F   F     W   R P  KV+W + VW+
Sbjct: 259  LLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWF 318

Query: 1026 MGHIPKVAFITWLAVRGGLATQDKLTQCRILESMSCVFCRSLVEDKNHLFFSCDFIAPIW 847
                PK + + W+A++  L T D++         SCV C  LVE ++HLFF+C + A +W
Sbjct: 319  SHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEVW 378