BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00008295
         (3911 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29879.3| unnamed protein product [Vitis vinifera]             1488   0.0  
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...  1488   0.0  
ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobro...  1399   0.0  
ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobro...  1395   0.0  
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...  1395   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...  1395   0.0  
ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prun...  1383   0.0  
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub...  1374   0.0  
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr...  1374   0.0  
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ...  1370   0.0  
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1365   0.0  
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...  1362   0.0  
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...  1337   0.0  
ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phas...  1336   0.0  
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...  1331   0.0  
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...  1324   0.0  
ref|XP_004299740.1| PREDICTED: DNA-directed RNA polymerase I sub...  1321   0.0  
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me...  1321   0.0  
ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana...  1316   0.0  
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...  1314   0.0  

>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 1488 bits (3851), Expect = 0.0
 Identities = 801/1284 (62%), Positives = 938/1284 (73%), Gaps = 29/1284 (2%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            LLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTPWN+ K
Sbjct: 425  LLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVK 484

Query: 183  LRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDIDF 362
            LRDAIING EIHPGATHY DK S   L             KLPSSRGVV QPG+S D +F
Sbjct: 485  LRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISR-KLPSSRGVVAQPGRSSDNEF 543

Query: 363  EGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 542
            EGKIV RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE
Sbjct: 544  EGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 603

Query: 543  MNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRDEY 722
            MNVHFPQDEISRAEAYNIVNANNQY+VPSRG+PIR LIQDHI+SAVLLTKKDTFL+R++Y
Sbjct: 604  MNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQY 663

Query: 723  SQLLYXXXXXXXXXXXXXCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNH 899
            +QLLY              KPG+KV ++ SEDEMQ L PAI KPEPLW+GKQVITAVLNH
Sbjct: 664  NQLLYSSGLSSGSGSFIG-KPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNH 722

Query: 900  ITKGHPPFTVEKEGKIPREYFGSNT-------GEDDLSVERKTSXXXXXXXXXXXXXILY 1058
            IT+G  PFT EK+GKIPREYFGS         G+D  S  RK                L 
Sbjct: 723  ITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYK----LL 778

Query: 1059 VSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDD 1238
            + KN+LVRGVIDKAQF  YGLVH VQELYG  TAGILLS  SRLFTVFLQMHGFTCGVDD
Sbjct: 779  IHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDD 838

Query: 1239 LLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDEIDPKELP 1418
            LLI    DI RK EL+K ++ G                   V+ KF+G  + +IDP +L 
Sbjct: 839  LLISPNYDIARKIELDKSENIGEL-----------------VHCKFIGSNHGKIDPVKLQ 881

Query: 1419 NEIEYGICRYGEVGTTSLDNEMRKHLSNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAK 1598
             E+E  I   GE   T LD  M+  L+  +++VNKDL +KGL+KPFPKNC SLMTTTGAK
Sbjct: 882  VEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAK 941

Query: 1599 GGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQE 1778
            G  VNF Q+SS LGQQDLEGKRVPRMVSGKTLP F PWD + RAGGFISD FLTGLHPQE
Sbjct: 942  GSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQE 1001

Query: 1779 YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDG 1958
            YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYD+TVRD+DGSI+QF+YG+DG
Sbjct: 1002 YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDG 1061

Query: 1959 VDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKK 2138
            VDVHQTSFI++F+AL  N +++ EKF     K N YI+ LP +L KK ++FI+G  E+++
Sbjct: 1062 VDVHQTSFITEFEALAVNEEVVCEKFGQD-GKFNGYIQKLPKELRKKTKKFIEGFMEERQ 1120

Query: 2139 HIDD----EDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNV 2306
              D+    +DF+ L+  KY SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGE+NV
Sbjct: 1121 DFDNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNV 1180

Query: 2307 TLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGL 2486
            TLGIPRLQEILMTA+ +IKTPIMTCPL   +S D+ A+ LA  LKKVTV DITE++ V +
Sbjct: 1181 TLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDD-AERLAAKLKKVTVADITESMEVSI 1239

Query: 2487 -----RHHLYSRVYTLAMNLYRPA---SNSGISLKDYKETLTIQFVRELEDAIHNQINAI 2642
                 + H    +Y L M LY PA    ++GISL+D +ETL   FVRELEDAI N +  +
Sbjct: 1240 VPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLLL 1299

Query: 2643 KRMHGIQAFDQPSQSKASKETDEEVS--GMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQ 2816
             ++ GI+ F   S+S ASKETDE+ S  G+ G   D+D D              QKRK+Q
Sbjct: 1300 SKISGIKNFLPDSRSMASKETDEDASGDGLAGGNGDEDDDGEDDGGAEDLGLDAQKRKQQ 1359

Query: 2817 STDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASN 2996
            ++DE+DY D SE EP+EG  S G  +E      +D   D  ++S N +    D  D+ S 
Sbjct: 1360 ASDEMDYGD-SEGEPDEGEPSAGLTEE------IDLVEDEVEISNNEEVGISDPKDEDSK 1412

Query: 2997 LPSESQSPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDP 3176
            +PS+S+S                    +  +KD DR+I V                  +P
Sbjct: 1413 VPSKSKS----SKNKKAKTEAKRKKRFRAIKKDFDRAILV---KAKGTYFEVHFRFTNEP 1465

Query: 3177 HILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCH-------SNVSAEEKKRNSAL 3335
            HILL Q+A   A KVYI+S+G I+ CQ IDC+  QV+ +        N+  EEKK+  AL
Sbjct: 1466 HILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRDPKKRENIPGEEKKKLPAL 1525

Query: 3336 LTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNSYGITVDI 3515
             TAGVDF AFW+MQ+ LDV  +YSNN+H+ML T+GVEAAR +II+EV +VFN+YG+ V+I
Sbjct: 1526 QTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVNI 1585

Query: 3516 RHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLTDDLESPS 3695
            RHL+LIADFMTHSGGY PM+R GGIAESVSPFSK+TFETASKFIVEAA +G+TD+LES S
Sbjct: 1586 RHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASKFIVEAASHGMTDNLESAS 1645

Query: 3696 ARVCLGLPVKVGTGCFDVMQKVDI 3767
            AR+CLGLPVK+GTGCFD+MQK++I
Sbjct: 1646 ARICLGLPVKMGTGCFDLMQKIEI 1669


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score = 1488 bits (3851), Expect = 0.0
 Identities = 801/1284 (62%), Positives = 938/1284 (73%), Gaps = 29/1284 (2%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            LLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTPWN+ K
Sbjct: 496  LLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVK 555

Query: 183  LRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDIDF 362
            LRDAIING EIHPGATHY DK S   L             KLPSSRGVV QPG+S D +F
Sbjct: 556  LRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISR-KLPSSRGVVAQPGRSSDNEF 614

Query: 363  EGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 542
            EGKIV RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE
Sbjct: 615  EGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 674

Query: 543  MNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRDEY 722
            MNVHFPQDEISRAEAYNIVNANNQY+VPSRG+PIR LIQDHI+SAVLLTKKDTFL+R++Y
Sbjct: 675  MNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQY 734

Query: 723  SQLLYXXXXXXXXXXXXXCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNH 899
            +QLLY              KPG+KV ++ SEDEMQ L PAI KPEPLW+GKQVITAVLNH
Sbjct: 735  NQLLYSSGLSSGSGSFIG-KPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNH 793

Query: 900  ITKGHPPFTVEKEGKIPREYFGSNT-------GEDDLSVERKTSXXXXXXXXXXXXXILY 1058
            IT+G  PFT EK+GKIPREYFGS         G+D  S  RK                L 
Sbjct: 794  ITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYK----LL 849

Query: 1059 VSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDD 1238
            + KN+LVRGVIDKAQF  YGLVH VQELYG  TAGILLS  SRLFTVFLQMHGFTCGVDD
Sbjct: 850  IHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDD 909

Query: 1239 LLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDEIDPKELP 1418
            LLI    DI RK EL+K ++ G                   V+ KF+G  + +IDP +L 
Sbjct: 910  LLISPNYDIARKIELDKSENIGEL-----------------VHCKFIGSNHGKIDPVKLQ 952

Query: 1419 NEIEYGICRYGEVGTTSLDNEMRKHLSNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAK 1598
             E+E  I   GE   T LD  M+  L+  +++VNKDL +KGL+KPFPKNC SLMTTTGAK
Sbjct: 953  VEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAK 1012

Query: 1599 GGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQE 1778
            G  VNF Q+SS LGQQDLEGKRVPRMVSGKTLP F PWD + RAGGFISD FLTGLHPQE
Sbjct: 1013 GSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQE 1072

Query: 1779 YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDG 1958
            YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYD+TVRD+DGSI+QF+YG+DG
Sbjct: 1073 YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDG 1132

Query: 1959 VDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKK 2138
            VDVHQTSFI++F+AL  N +++ EKF     K N YI+ LP +L KK ++FI+G  E+++
Sbjct: 1133 VDVHQTSFITEFEALAVNEEVVCEKFGQD-GKFNGYIQKLPKELRKKTKKFIEGFMEERQ 1191

Query: 2139 HIDD----EDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNV 2306
              D+    +DF+ L+  KY SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGE+NV
Sbjct: 1192 DFDNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNV 1251

Query: 2307 TLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGL 2486
            TLGIPRLQEILMTA+ +IKTPIMTCPL   +S D+ A+ LA  LKKVTV DITE++ V +
Sbjct: 1252 TLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDD-AERLAAKLKKVTVADITESMEVSI 1310

Query: 2487 -----RHHLYSRVYTLAMNLYRPA---SNSGISLKDYKETLTIQFVRELEDAIHNQINAI 2642
                 + H    +Y L M LY PA    ++GISL+D +ETL   FVRELEDAI N +  +
Sbjct: 1311 VPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLLL 1370

Query: 2643 KRMHGIQAFDQPSQSKASKETDEEVS--GMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQ 2816
             ++ GI+ F   S+S ASKETDE+ S  G+ G   D+D D              QKRK+Q
Sbjct: 1371 SKISGIKNFLPDSRSMASKETDEDASGDGLAGGNGDEDDDGEDDGGAEDLGLDAQKRKQQ 1430

Query: 2817 STDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASN 2996
            ++DE+DY D SE EP+EG  S G  +E      +D   D  ++S N +    D  D+ S 
Sbjct: 1431 ASDEMDYGD-SEGEPDEGEPSAGLTEE------IDLVEDEVEISNNEEVGISDPKDEDSK 1483

Query: 2997 LPSESQSPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDP 3176
            +PS+S+S                    +  +KD DR+I V                  +P
Sbjct: 1484 VPSKSKS----SKNKKAKTEAKRKKRFRAIKKDFDRAILV---KAKGTYFEVHFRFTNEP 1536

Query: 3177 HILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCH-------SNVSAEEKKRNSAL 3335
            HILL Q+A   A KVYI+S+G I+ CQ IDC+  QV+ +        N+  EEKK+  AL
Sbjct: 1537 HILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRDPKKRENIPGEEKKKLPAL 1596

Query: 3336 LTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNSYGITVDI 3515
             TAGVDF AFW+MQ+ LDV  +YSNN+H+ML T+GVEAAR +II+EV +VFN+YG+ V+I
Sbjct: 1597 QTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVNI 1656

Query: 3516 RHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLTDDLESPS 3695
            RHL+LIADFMTHSGGY PM+R GGIAESVSPFSK+TFETASKFIVEAA +G+TD+LES S
Sbjct: 1657 RHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASKFIVEAASHGMTDNLESAS 1716

Query: 3696 ARVCLGLPVKVGTGCFDVMQKVDI 3767
            AR+CLGLPVK+GTGCFD+MQK++I
Sbjct: 1717 ARICLGLPVKMGTGCFDLMQKIEI 1740


>ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
            gi|508717460|gb|EOY09357.1| Nuclear RNA polymerase A1
            isoform 3 [Theobroma cacao]
          Length = 1400

 Score = 1399 bits (3621), Expect = 0.0
 Identities = 759/1291 (58%), Positives = 903/1291 (69%), Gaps = 36/1291 (2%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            LLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN+ K
Sbjct: 140  LLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVK 199

Query: 183  LRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDIDF 362
            LR+AIINGSE HPGATHY DK S   L             KLPSSRG + QPGK+ D +F
Sbjct: 200  LREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISISR-KLPSSRGAIAQPGKNLDYEF 258

Query: 363  EGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 542
            EGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCSTYNADFDGDE
Sbjct: 259  EGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDE 318

Query: 543  MNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRDEY 722
            +NVHFPQDEISRAEAYNIVNANNQYV PS GEPIRALIQDHI+SAVLLTK+DTFLSRDE+
Sbjct: 319  INVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEF 378

Query: 723  SQLLYXXXXXXXXXXXXXCKPGQKVCL-VSEDEMQTLQPAILKPEPLWTGKQVITAVLNH 899
            +QLLY              KPGQKV +  SE+ M  + PAILKP+PLWTGKQVI++VL+H
Sbjct: 379  NQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSH 438

Query: 900  ITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVE---------RKTSXXXXXXXXXXXXXI 1052
            IT+G PPFTV K  KIPR++F +   ++  S           +K                
Sbjct: 439  ITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEK 498

Query: 1053 LYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGV 1232
            + + +NDLVRGVIDKAQF  YGLVHTVQELYG  TAGILLS FSRLFTVFLQMHGFTCGV
Sbjct: 499  ILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGV 558

Query: 1233 DDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYD-EIDPK 1409
            DDLLI++ +DIERK++LE C+                 K +   + +  G+K + E  P 
Sbjct: 559  DDLLIMEDKDIERKKQLEDCE-----------------KKVTEAHYELFGVKVNSETAPT 601

Query: 1410 ELPNEIEYGICRYGEVGTTSLDNEMRKHLS-NASTEVNKDLFVKGLLKPFPKNCFSLMTT 1586
            EL  EIE  I R GE   T+LD +M   L+ N+S  V  +L  +GL+K   +NC SLMTT
Sbjct: 602  ELQLEIERTIRRDGETALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTT 661

Query: 1587 TGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGL 1766
            +GAKG  VNFQQ+SS LGQQ+LEGKRVPRMVSGKTLP F PWDW+ RAGGFISD FL+GL
Sbjct: 662  SGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGL 721

Query: 1767 HPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSY 1946
             PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK+ YDHTVRDADGSI+QF Y
Sbjct: 722  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIY 781

Query: 1947 GEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVP 2126
            GEDG+DVHQTSFI+KF+AL  N  ++ EK    L + +   + LP  L  KA +FI+   
Sbjct: 782  GEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIREEI 841

Query: 2127 EKKKH--IDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEM 2300
            +K +H  I  +DF+ L+  K+ SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEM
Sbjct: 842  KKYQHQKIKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEM 901

Query: 2301 NVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYV 2480
            NVTLGIPRLQEILMTAS++I+TP+MTCPL K K T E A  LA  +KK+TV DI E++ V
Sbjct: 902  NVTLGIPRLQEILMTASIDIRTPVMTCPLHKGK-TKEDALCLANKMKKITVADILESMEV 960

Query: 2481 GLRHHLYSR-----VYTLAMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQIN 2636
             +            +Y L M L +P     NS I++KD +  L + F+RELEDAI N + 
Sbjct: 961  SVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLV 1020

Query: 2637 AIKRMHGIQAFDQPSQSKASKETDEEVSGMRGEE-----NDDDGDVSXXXXXXXXXXXXQ 2801
             + ++ GI+ F   SQ  AS E DE+VS  R  E     +DDD D              Q
Sbjct: 1021 LLSKISGIKKFMPDSQRNASNEMDEDVSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQ 1080

Query: 2802 KRKRQSTDEVDYDDASEDEPNEGVLSTGFEQE----KENGNCLDTEMDGDDVSRNSQDAE 2969
            K+K+Q+TDE+DY+D SE E NEG      E E    ++    +   M G D  ++     
Sbjct: 1081 KQKQQTTDEMDYEDDSEVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQS 1140

Query: 2970 MDGDDDASNLPSESQSPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXX 3149
                ++ SN  S  +                     +  RK++DR+I             
Sbjct: 1141 SPNLENRSNPKSREEK--------TGSEPKRKKMKAKFVRKESDRAI---FNAIRGLCFE 1189

Query: 3150 XXXXXDEDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCH-----SNVSAEE 3314
                   +PHILL Q+A   AKKVYI+S G I+ C+  DCS  QV  +        S  +
Sbjct: 1190 VHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSD 1249

Query: 3315 KKRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNS 3494
            K++  AL T GVDF AFW+M++++DV  +YSN+IH+ML TYGVEAARE+IIRE+SHVF S
Sbjct: 1250 KEKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTS 1309

Query: 3495 YGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLT 3674
            YGI V+IRHLTLIADFMTHSG Y PMSR GGIAES+SPFSK++FETASKFIVEAA +GL 
Sbjct: 1310 YGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLV 1369

Query: 3675 DDLESPSARVCLGLPVKVGTGCFDVMQKVDI 3767
            D+LE+PS+R+CLGLPVK+GTG FD+MQKV+I
Sbjct: 1370 DNLETPSSRICLGLPVKMGTGSFDLMQKVEI 1400


>ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
            gi|508717461|gb|EOY09358.1| Nuclear RNA polymerase A1
            isoform 4 [Theobroma cacao]
          Length = 1397

 Score = 1395 bits (3610), Expect = 0.0
 Identities = 757/1290 (58%), Positives = 901/1290 (69%), Gaps = 35/1290 (2%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            LLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN+ K
Sbjct: 140  LLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVK 199

Query: 183  LRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDIDF 362
            LR+AIINGSE HPGATHY DK S   L             KLPSSRG + QPGK+ D +F
Sbjct: 200  LREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISISR-KLPSSRGAIAQPGKNLDYEF 258

Query: 363  EGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 542
            EGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCSTYNADFDGDE
Sbjct: 259  EGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDE 318

Query: 543  MNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRDEY 722
            +NVHFPQDEISRAEAYNIVNANNQYV PS GEPIRALIQDHI+SAVLLTK+DTFLSRDE+
Sbjct: 319  INVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEF 378

Query: 723  SQLLYXXXXXXXXXXXXXCKPGQKVCL-VSEDEMQTLQPAILKPEPLWTGKQVITAVLNH 899
            +QLLY              KPGQKV +  SE+ M  + PAILKP+PLWTGKQVI++VL+H
Sbjct: 379  NQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSH 438

Query: 900  ITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVE---------RKTSXXXXXXXXXXXXXI 1052
            IT+G PPFTV K  KIPR++F +   ++  S           +K                
Sbjct: 439  ITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEK 498

Query: 1053 LYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGV 1232
            + + +NDLVRGVIDKAQF  YGLVHTVQELYG  TAGILLS FSRLFTVFLQMHGFTCGV
Sbjct: 499  ILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGV 558

Query: 1233 DDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDEIDPKE 1412
            DDLLI++ +DIERK++LE C+                 K +   + +  G+K +     E
Sbjct: 559  DDLLIMEDKDIERKKQLEDCE-----------------KKVTEAHYELFGVKVNS--ETE 599

Query: 1413 LPNEIEYGICRYGEVGTTSLDNEMRKHLS-NASTEVNKDLFVKGLLKPFPKNCFSLMTTT 1589
            L  EIE  I R GE   T+LD +M   L+ N+S  V  +L  +GL+K   +NC SLMTT+
Sbjct: 600  LQLEIERTIRRDGETALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTS 659

Query: 1590 GAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLH 1769
            GAKG  VNFQQ+SS LGQQ+LEGKRVPRMVSGKTLP F PWDW+ RAGGFISD FL+GL 
Sbjct: 660  GAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLR 719

Query: 1770 PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYG 1949
            PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK+ YDHTVRDADGSI+QF YG
Sbjct: 720  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYG 779

Query: 1950 EDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPE 2129
            EDG+DVHQTSFI+KF+AL  N  ++ EK    L + +   + LP  L  KA +FI+   +
Sbjct: 780  EDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIREEIK 839

Query: 2130 KKKH--IDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMN 2303
            K +H  I  +DF+ L+  K+ SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMN
Sbjct: 840  KYQHQKIKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMN 899

Query: 2304 VTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVG 2483
            VTLGIPRLQEILMTAS++I+TP+MTCPL K K T E A  LA  +KK+TV DI E++ V 
Sbjct: 900  VTLGIPRLQEILMTASIDIRTPVMTCPLHKGK-TKEDALCLANKMKKITVADILESMEVS 958

Query: 2484 LRHHLYSR-----VYTLAMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINA 2639
            +            +Y L M L +P     NS I++KD +  L + F+RELEDAI N +  
Sbjct: 959  VAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVL 1018

Query: 2640 IKRMHGIQAFDQPSQSKASKETDEEVSGMRGEE-----NDDDGDVSXXXXXXXXXXXXQK 2804
            + ++ GI+ F   SQ  AS E DE+VS  R  E     +DDD D              QK
Sbjct: 1019 LSKISGIKKFMPDSQRNASNEMDEDVSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQK 1078

Query: 2805 RKRQSTDEVDYDDASEDEPNEGVLSTGFEQE----KENGNCLDTEMDGDDVSRNSQDAEM 2972
            +K+Q+TDE+DY+D SE E NEG      E E    ++    +   M G D  ++      
Sbjct: 1079 QKQQTTDEMDYEDDSEVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSS 1138

Query: 2973 DGDDDASNLPSESQSPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXX 3152
               ++ SN  S  +                     +  RK++DR+I              
Sbjct: 1139 PNLENRSNPKSREEK--------TGSEPKRKKMKAKFVRKESDRAI---FNAIRGLCFEV 1187

Query: 3153 XXXXDEDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCH-----SNVSAEEK 3317
                  +PHILL Q+A   AKKVYI+S G I+ C+  DCS  QV  +        S  +K
Sbjct: 1188 HFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDK 1247

Query: 3318 KRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNSY 3497
            ++  AL T GVDF AFW+M++++DV  +YSN+IH+ML TYGVEAARE+IIRE+SHVF SY
Sbjct: 1248 EKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSY 1307

Query: 3498 GITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLTD 3677
            GI V+IRHLTLIADFMTHSG Y PMSR GGIAES+SPFSK++FETASKFIVEAA +GL D
Sbjct: 1308 GIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVD 1367

Query: 3678 DLESPSARVCLGLPVKVGTGCFDVMQKVDI 3767
            +LE+PS+R+CLGLPVK+GTG FD+MQKV+I
Sbjct: 1368 NLETPSSRICLGLPVKMGTGSFDLMQKVEI 1397


>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
            gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
            putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score = 1395 bits (3610), Expect = 0.0
 Identities = 757/1290 (58%), Positives = 901/1290 (69%), Gaps = 35/1290 (2%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            LLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN+ K
Sbjct: 432  LLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVK 491

Query: 183  LRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDIDF 362
            LR+AIINGSE HPGATHY DK S   L             KLPSSRG + QPGK+ D +F
Sbjct: 492  LREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISISR-KLPSSRGAIAQPGKNLDYEF 550

Query: 363  EGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 542
            EGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCSTYNADFDGDE
Sbjct: 551  EGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDE 610

Query: 543  MNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRDEY 722
            +NVHFPQDEISRAEAYNIVNANNQYV PS GEPIRALIQDHI+SAVLLTK+DTFLSRDE+
Sbjct: 611  INVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEF 670

Query: 723  SQLLYXXXXXXXXXXXXXCKPGQKVCL-VSEDEMQTLQPAILKPEPLWTGKQVITAVLNH 899
            +QLLY              KPGQKV +  SE+ M  + PAILKP+PLWTGKQVI++VL+H
Sbjct: 671  NQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSH 730

Query: 900  ITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVE---------RKTSXXXXXXXXXXXXXI 1052
            IT+G PPFTV K  KIPR++F +   ++  S           +K                
Sbjct: 731  ITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEK 790

Query: 1053 LYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGV 1232
            + + +NDLVRGVIDKAQF  YGLVHTVQELYG  TAGILLS FSRLFTVFLQMHGFTCGV
Sbjct: 791  ILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGV 850

Query: 1233 DDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDEIDPKE 1412
            DDLLI++ +DIERK++LE C+                 K +   + +  G+K +     E
Sbjct: 851  DDLLIMEDKDIERKKQLEDCE-----------------KKVTEAHYELFGVKVNS--ETE 891

Query: 1413 LPNEIEYGICRYGEVGTTSLDNEMRKHLS-NASTEVNKDLFVKGLLKPFPKNCFSLMTTT 1589
            L  EIE  I R GE   T+LD +M   L+ N+S  V  +L  +GL+K   +NC SLMTT+
Sbjct: 892  LQLEIERTIRRDGETALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTS 951

Query: 1590 GAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLH 1769
            GAKG  VNFQQ+SS LGQQ+LEGKRVPRMVSGKTLP F PWDW+ RAGGFISD FL+GL 
Sbjct: 952  GAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLR 1011

Query: 1770 PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYG 1949
            PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK+ YDHTVRDADGSI+QF YG
Sbjct: 1012 PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYG 1071

Query: 1950 EDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPE 2129
            EDG+DVHQTSFI+KF+AL  N  ++ EK    L + +   + LP  L  KA +FI+   +
Sbjct: 1072 EDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIREEIK 1131

Query: 2130 KKKH--IDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMN 2303
            K +H  I  +DF+ L+  K+ SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMN
Sbjct: 1132 KYQHQKIKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMN 1191

Query: 2304 VTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVG 2483
            VTLGIPRLQEILMTAS++I+TP+MTCPL K K T E A  LA  +KK+TV DI E++ V 
Sbjct: 1192 VTLGIPRLQEILMTASIDIRTPVMTCPLHKGK-TKEDALCLANKMKKITVADILESMEVS 1250

Query: 2484 LRHHLYSR-----VYTLAMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINA 2639
            +            +Y L M L +P     NS I++KD +  L + F+RELEDAI N +  
Sbjct: 1251 VAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVL 1310

Query: 2640 IKRMHGIQAFDQPSQSKASKETDEEVSGMRGEE-----NDDDGDVSXXXXXXXXXXXXQK 2804
            + ++ GI+ F   SQ  AS E DE+VS  R  E     +DDD D              QK
Sbjct: 1311 LSKISGIKKFMPDSQRNASNEMDEDVSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQK 1370

Query: 2805 RKRQSTDEVDYDDASEDEPNEGVLSTGFEQE----KENGNCLDTEMDGDDVSRNSQDAEM 2972
            +K+Q+TDE+DY+D SE E NEG      E E    ++    +   M G D  ++      
Sbjct: 1371 QKQQTTDEMDYEDDSEVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSS 1430

Query: 2973 DGDDDASNLPSESQSPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXX 3152
               ++ SN  S  +                     +  RK++DR+I              
Sbjct: 1431 PNLENRSNPKSREEK--------TGSEPKRKKMKAKFVRKESDRAI---FNAIRGLCFEV 1479

Query: 3153 XXXXDEDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCH-----SNVSAEEK 3317
                  +PHILL Q+A   AKKVYI+S G I+ C+  DCS  QV  +        S  +K
Sbjct: 1480 HFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDK 1539

Query: 3318 KRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNSY 3497
            ++  AL T GVDF AFW+M++++DV  +YSN+IH+ML TYGVEAARE+IIRE+SHVF SY
Sbjct: 1540 EKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSY 1599

Query: 3498 GITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLTD 3677
            GI V+IRHLTLIADFMTHSG Y PMSR GGIAES+SPFSK++FETASKFIVEAA +GL D
Sbjct: 1600 GIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVD 1659

Query: 3678 DLESPSARVCLGLPVKVGTGCFDVMQKVDI 3767
            +LE+PS+R+CLGLPVK+GTG FD+MQKV+I
Sbjct: 1660 NLETPSSRICLGLPVKMGTGSFDLMQKVEI 1689


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score = 1395 bits (3610), Expect = 0.0
 Identities = 762/1288 (59%), Positives = 902/1288 (70%), Gaps = 33/1288 (2%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            LLEKK+G+FRQKMMGKRVN+ACRSVISPDPY+ VNEIGIPP FA++LTYPERVTPWNI K
Sbjct: 424  LLEKKEGLFRQKMMGKRVNYACRSVISPDPYIGVNEIGIPPCFAVKLTYPERVTPWNIAK 483

Query: 183  LRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDIDF 362
            LR+A+INGSE HPGATHY DK S++ L             KLPSSRG VTQ GK  + +F
Sbjct: 484  LRNAVINGSECHPGATHYVDKLSINKLPPARKARISISR-KLPSSRGAVTQAGKGSECEF 542

Query: 363  EGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS-TYNADFDGD 539
            EGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS TYNADFDGD
Sbjct: 543  EGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSITYNADFDGD 602

Query: 540  EMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRDE 719
            EMNVHFPQDE+SRAEAYNIVNANNQ+V PS GEP+R LIQDHI+SAVLLTKKDTFLS+DE
Sbjct: 603  EMNVHFPQDEVSRAEAYNIVNANNQFVRPSNGEPLRGLIQDHIVSAVLLTKKDTFLSQDE 662

Query: 720  YSQLLYXXXXXXXXXXXXXCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLN 896
            ++QLLY              +PGQKV    SEDE+QTL PAI KP+PLWTGKQVITA+LN
Sbjct: 663  FNQLLYSSGVSTVGPNSFHGRPGQKVLWSRSEDEIQTLPPAIWKPKPLWTGKQVITAILN 722

Query: 897  HITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDL 1076
            HIT  HPPFTVEK+ KIP  +F S   ED    E K+              +L V KN+L
Sbjct: 723  HITSDHPPFTVEKDAKIPSNFFKSRANEDKPCQEEKSDKDAPAEKEPDEEKML-VYKNEL 781

Query: 1077 VRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKY 1256
            VRGVIDK QFG YGLVHTV EL G  TAGILLS  SRLFT +LQMHGFTCGVDDLLIL  
Sbjct: 782  VRGVIDKGQFGEYGLVHTVHELLGSHTAGILLSVLSRLFTAYLQMHGFTCGVDDLLILTN 841

Query: 1257 RDIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDEI--DPKELPNEIE 1430
            +D ERK++LE C+  G                   V+  F+GIK ++I  DP  +   IE
Sbjct: 842  KDEERKKQLEWCEKSGEA-----------------VHRNFIGIKDEKIKIDPVAMQLNIE 884

Query: 1431 YGICRYGEVGTTSLDNEMRKHLSN-ASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGM 1607
              I   G+     LD +M   L+   S+ V  +L   GLLKP  KNC SLMTT+GAKG  
Sbjct: 885  KTIRSDGDSALAYLDRQMSNELNTKTSSGVISNLLSDGLLKPSGKNCISLMTTSGAKGSK 944

Query: 1608 VNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYF 1787
            VNFQQ+SS LGQQ+LEGKRVPRMVSGKTLP F PWDW+ R+GG+I+D FLTGL PQEYYF
Sbjct: 945  VNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARSGGYITDRFLTGLRPQEYYF 1004

Query: 1788 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDV 1967
            HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK+ YDHTVRDADGS++QF YGEDGVDV
Sbjct: 1005 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIGYDHTVRDADGSVVQFYYGEDGVDV 1064

Query: 1968 HQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVP----EKK 2135
            HQTSFI+KFK L  N  ++ ++    L   NSYI  LP  L++KA  F+           
Sbjct: 1065 HQTSFIAKFKELALNQDMIYKRSGGQLGAFNSYISELPEALKEKADRFLDDFSIMGRIAS 1124

Query: 2136 KHIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLG 2315
              +  ED   LM  K+  SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLG
Sbjct: 1125 NLVKREDLYNLMKQKFLLSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1184

Query: 2316 IPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYV----- 2480
            IPRLQEILMTAS++IKTPIMTCP L+E  T+E A  LA  L+KVTV DI E++ V     
Sbjct: 1185 IPRLQEILMTASIDIKTPIMTCP-LQEGRTNEDADHLADKLRKVTVADIVESMEVSVVPF 1243

Query: 2481 GLRHHLYSRVYTLAMNLYRPA---SNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRM 2651
             ++     R+Y L M LYRPA     + IS++D++ETL + F+RELEDAI N +  + R+
Sbjct: 1244 AIQDGGVCRIYKLKMKLYRPAHYPQYANISVEDWEETLEVVFLRELEDAIQNHMFLLSRI 1303

Query: 2652 HGIQAFDQPSQSKASKETDEEVSG--MRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTD 2825
             GI+ F   S+S+AS E DE+V+G     EE DDD D              QKRK Q+TD
Sbjct: 1304 SGIKDFLPESRSRASGEADEDVAGDMSHREERDDDNDDDDGERADDLGLDAQKRKLQATD 1363

Query: 2826 EVDYDDASEDEPNEGVLS-----TGFEQEKENGNCLDTEMDGDDVSRN--SQDAEMDGDD 2984
            E+DYDD  E+E NEG  +     +GFE E + G+  +TE+  D +  N  S+   +    
Sbjct: 1364 EMDYDDGFEEELNEGESTASEEESGFESEIDQGD-NETEISNDVMLDNEASETLPLRKPS 1422

Query: 2985 DASNLPSESQSPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXX 3164
               +    ++SP                   ++S KD DR+I V                
Sbjct: 1423 KPKSKKKAAESPSHGEKSKDKKKKPKAKRKSRIS-KDFDRAIFV---EARKMHFEVHFKF 1478

Query: 3165 DEDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCHS-------NVSAEEKKR 3323
              +PHILL ++A   AKKVYI++ G IE C+  DC   QV+ +        ++  + K++
Sbjct: 1479 TNEPHILLAEIAQKTAKKVYIQNPGKIEQCRVTDCKESQVIYYGKDPKERVDLKPDVKEK 1538

Query: 3324 NSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNSYGI 3503
              AL   GVDF  FW+MQ++LDV  IYSNNIH+MLKTYGVEAARE+IIRE++HVF SYGI
Sbjct: 1539 VPALHATGVDFNTFWKMQDHLDVRYIYSNNIHAMLKTYGVEAARETIIREINHVFKSYGI 1598

Query: 3504 TVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLTDDL 3683
             V  RHL+LIADFMTH+GGY PMSR GGIAES+SPFSK++FETASKFIVEAAL+G  D+L
Sbjct: 1599 AVSNRHLSLIADFMTHTGGYRPMSRMGGIAESISPFSKMSFETASKFIVEAALHGEIDNL 1658

Query: 3684 ESPSARVCLGLPVKVGTGCFDVMQKVDI 3767
            E+PSAR+CLGLPVK+GTG FD+MQK++I
Sbjct: 1659 ETPSARICLGLPVKMGTGSFDLMQKLEI 1686


>ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prunus persica]
            gi|462398594|gb|EMJ04262.1| hypothetical protein
            PRUPE_ppa000153mg [Prunus persica]
          Length = 1612

 Score = 1383 bits (3580), Expect = 0.0
 Identities = 751/1300 (57%), Positives = 895/1300 (68%), Gaps = 45/1300 (3%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            LLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFA RLTYPERVTPWN+ K
Sbjct: 335  LLEKKEGLFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFATRLTYPERVTPWNVDK 394

Query: 183  LRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDIDF 362
            LR+AI+NGSEIHPGAT Y DKS   +L             KLPSS+G V Q GK  D D 
Sbjct: 395  LRNAIVNGSEIHPGATQYVDKSGPKILRQNRRERISISR-KLPSSKGAVMQHGKGSDNDI 453

Query: 363  EGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 542
            E KIV RHL+DGDIVLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCSTYNADFDGDE
Sbjct: 454  ESKIVHRHLRDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDE 513

Query: 543  MNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRDEY 722
            MNVHFPQDEISR+EAYNIVNANNQYV P+ G+PIRALIQDH+ISAVLLTKKDTFL  D++
Sbjct: 514  MNVHFPQDEISRSEAYNIVNANNQYVKPTSGDPIRALIQDHVISAVLLTKKDTFLRWDQF 573

Query: 723  SQLLYXXXXXXXXXXXXXCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNH 899
            +QLLY              KP +KV +  SE  MQ L PAI KPEPLWTGKQVITA+LNH
Sbjct: 574  NQLLYSSCVSARVSDAFSGKPDKKVFMFNSEGTMQPLLPAIWKPEPLWTGKQVITALLNH 633

Query: 900  ITKGHPPFTVEKEGKIPREYFGSNT--GEDDL-----------SVERKTSXXXXXXXXXX 1040
            IT+G PP TVE++ KIPR +F      GED             S E+ T           
Sbjct: 634  ITRGSPPVTVERDAKIPRGFFNCKNVEGEDKSGNDGQQKKRKPSKEQATDKDSSKEKEEP 693

Query: 1041 XXXILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGF 1220
                L + +N+LVRGVIDKAQFG YGLVHTVQE YG  TAG LLS  S LFTV+LQMHGF
Sbjct: 694  DENHLLIYRNNLVRGVIDKAQFGDYGLVHTVQEFYGSDTAGKLLSVLSHLFTVYLQMHGF 753

Query: 1221 TCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIK-YDE 1397
            TCG+DDLL+L+ +D + K +LE C+D G                  NVY  F+ +K    
Sbjct: 754  TCGIDDLLLLESKDAKMKDQLESCEDVG-----------------ENVYRDFIEVKDVKR 796

Query: 1398 IDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLSN--ASTEVNKDLFVKGLLKPFPKNCF 1571
             DP EL   IE  I   GE    SLD  M   L+N  ++++V K L ++GL KP  KNC 
Sbjct: 797  KDPVELQLNIENFIRSNGESALASLDRRMISQLNNKTSNSDVFKQLLLRGLSKPSVKNCI 856

Query: 1572 SLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDN 1751
             LMTT+GAKG + N QQ++S LGQQ+LEGKRVP+M+SGKTLP F PWDWS RAGGFI D 
Sbjct: 857  YLMTTSGAKGSVANLQQITSYLGQQELEGKRVPQMISGKTLPCFPPWDWSSRAGGFIIDR 916

Query: 1752 FLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSI 1931
            FLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC+IKNLECLKV YD+TVRDADGSI
Sbjct: 917  FLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCIIKNLECLKVSYDNTVRDADGSI 976

Query: 1932 IQFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREF 2111
            IQF YGEDG+DVH TSFI KF++L  N ++  +K    +DK N YI+ LP  L++KA +F
Sbjct: 977  IQFRYGEDGIDVHMTSFIQKFESLIANKEMFHKKGRRQMDKLNPYIKDLPLALKEKAEKF 1036

Query: 2112 IKGVPEKKK-HIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAG 2288
            +  +  K+K H   EDF+KLM HKY  SLAQPGEPVGVLA QSVGEPSTQMTLNTFHLAG
Sbjct: 1037 VHNLALKEKDHNFQEDFLKLMEHKYLCSLAQPGEPVGVLAGQSVGEPSTQMTLNTFHLAG 1096

Query: 2289 RGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITE 2468
            RGEMNVTLGIPRLQEILMTA+ +IKTP+MTCPL K +S +E A+ LA  LKK+TV DI E
Sbjct: 1097 RGEMNVTLGIPRLQEILMTAANDIKTPVMTCPLQKGRSKEE-AQELADKLKKITVADIIE 1155

Query: 2469 NIYVG-----LRHHLYSRVYTLAMNLYRPASNSGI---SLKDYKETLTIQFVRELEDAIH 2624
            ++ V      ++     R+Y L M L+ P     I   S +D++E L I FVRELEDAI 
Sbjct: 1156 SMKVTFVPFFIQDGQTCRIYKLEMTLHVPEHLRTIIEYSSEDWEEILEIVFVRELEDAIQ 1215

Query: 2625 NQINAIKRMHGIQAFDQPSQSKASKETDE---EVSGMRGEENDDDG---DVSXXXXXXXX 2786
            N I  + ++ GI+ F   SQ KAS ETDE   E    R EE+DD+G   D          
Sbjct: 1216 NHILLLSKISGIKNFTPDSQPKASNETDENLPEKRSQREEEDDDNGGADDGEHGEGVEDF 1275

Query: 2787 XXXXQKRKRQSTDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDA 2966
                 KRK Q+TDE+DY+D  +DE  E  LS G E E      +D E +  ++ ++ +  
Sbjct: 1276 GLDAHKRKLQATDEMDYEDGCDDEVREADLSDGDESE------IDEEENEVEIGKDGEIG 1329

Query: 2967 EMDGDDDASNLPSE------SQSPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXX 3128
             +D +D+    P E                             ++ +K+ DR+I V    
Sbjct: 1330 VIDANDEMPGSPLEEAGDLAKPKSKEKKTKSGSQIRKKRKVRAEMVKKETDRAIFV--SA 1387

Query: 3129 XXXXXXXXXXXXDEDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLC------ 3290
                        D +PHILL Q+A   A+KVYI+ +G +  C++I C   QVLC      
Sbjct: 1388 KGFHFEVHFRFADNEPHILLSQIAQKTAQKVYIQRSGKVADCKQITCDENQVLCFGKDPE 1447

Query: 3291 -HSNVSAEEKKRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESII 3467
               + S++EKK   AL T G+DF  FW++Q+ LDV  IYSNNIH+ML TYGVEAARE+II
Sbjct: 1448 NKQSFSSKEKKEMPALQTTGIDFGTFWQLQDVLDVRYIYSNNIHAMLNTYGVEAARETII 1507

Query: 3468 REVSHVFNSYGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFI 3647
            RE+++VF SYGI+V+IRHLTLIADFMTH+GGY P++R GGI ES+SPF+K+TFETASKFI
Sbjct: 1508 REINNVFKSYGISVNIRHLTLIADFMTHAGGYRPLNRFGGIVESISPFNKMTFETASKFI 1567

Query: 3648 VEAALYGLTDDLESPSARVCLGLPVKVGTGCFDVMQKVDI 3767
            VEAA +G  D LE+PSAR+CLGLPV VGTGCFD+M K+++
Sbjct: 1568 VEAAYHGQVDRLETPSARICLGLPVNVGTGCFDLMHKMEV 1607


>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
            sinensis]
          Length = 1715

 Score = 1374 bits (3556), Expect = 0.0
 Identities = 752/1312 (57%), Positives = 902/1312 (68%), Gaps = 57/1312 (4%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            LLEKK+G+FRQK+MGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN+ K
Sbjct: 433  LLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVK 492

Query: 183  LRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDIDF 362
            LRD+IING+EIHPGATHY DK S   L             KL +SRG + QPGK  D +F
Sbjct: 493  LRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIAR-KLDTSRGAIVQPGKDSDNEF 551

Query: 363  EGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 542
            EGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE
Sbjct: 552  EGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 611

Query: 543  MNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRDEY 722
            MNVHFPQDE+SRAEAYNIVNANNQYV PS G+P+R+LIQDHI+SA LLTKKDTFL+RDE+
Sbjct: 612  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 671

Query: 723  SQLLYXXXXXXXXXXXXXCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNH 899
             QLLY              KPGQ+V +  SE E+  L PAI KPEPLWTGKQVITAVLNH
Sbjct: 672  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 731

Query: 900  ITKGHPPFTVEKEGKIPREYFGSNTGEDDLSV---------------------------- 995
            IT+G PPF VE+ GK+P+++F +    D  S                             
Sbjct: 732  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 791

Query: 996  ----ERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAG 1163
                E K +              L + KNDLVRGVIDKAQF  YGLVHTVQELYG  TAG
Sbjct: 792  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAG 851

Query: 1164 ILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXX 1343
             LLSA SRLFTVFLQMHGFTCGVDDLLILK ++ ERK  L   ++ G             
Sbjct: 852  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG------------- 898

Query: 1344 RKDIRNVYSKFLGIKYD-EIDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLS-NASTEV 1517
                + V+ + L ++   EIDP +L +EIE  +   G+      D +M   L+ + S+ V
Sbjct: 899  ----KRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSV 954

Query: 1518 NKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLP 1697
              +L  +GLLKP  KN  SLMTT+GAKG  VNFQQ+SS LGQQ+LEGKRVPRMVSGKTLP
Sbjct: 955  INELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLP 1014

Query: 1698 SFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1877
            SF PWDW+PRAGGFI D FLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL
Sbjct: 1015 SFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1074

Query: 1878 ECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKS 2057
            ECLK+ YD++VRDADGSI+QF YGEDGVDVHQTSFISKF AL  N +++ +K    LD S
Sbjct: 1075 ECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAANQEMIYKKCSGQLDAS 1134

Query: 2058 NSYIEHLPPKLEKKAREFIKGVPEKKKHIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQS 2237
            N+YI  LP  L+  A +F          +  +DF+KL+ HK+  SLAQPGEPVG+LA+QS
Sbjct: 1135 NAYIMELPDALKDNAEKFADKF--LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1192

Query: 2238 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIA 2417
            VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL  AS +IKTP++TCPLL  K+ D+ A
Sbjct: 1193 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKTEDD-A 1251

Query: 2418 KGLAQTLKKVTVGDITENIYVGLRHHL-----YSRVYTLAMNLYRP---ASNSGISLKDY 2573
            K LA  LKK+TV DI + I V +R           VY L M LY+P    + + I+L+D+
Sbjct: 1252 KRLADKLKKITVADIVKKISVKVRAFTSHDGQACSVYVLTMELYKPKNYPTYTDITLEDW 1311

Query: 2574 KETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQPSQSKASKETDEEVSG----MRGEEN 2741
            +E L + FVRELED I N +  + +++GI+        KAS ETD++ SG     RG+  
Sbjct: 1312 EEILEVVFVRELEDTIQNHLLLLSKINGIKNVASGLTQKASNETDQDGSGNVSQCRGD-- 1369

Query: 2742 DDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLD 2921
            DDD D +             K+K+++TDE DY+D SE+E N+GV + GF  E +     +
Sbjct: 1370 DDDADDADGEEAEDLGMDAHKQKQRATDEKDYEDGSEEEMNDGVSAAGFGSEIDQA---E 1426

Query: 2922 TEMDGDDVSRNSQDAEMDGDDDAS-NLPSESQSP--XXXXXXXXXXXXXXXXXXXQLSRK 3092
            +E+D D      +D     + + S +  SE+  P                     +L +K
Sbjct: 1427 SEIDDDQAETEIEDDRATNEIETSQDQASENLKPFTPKSSKKKSKSKSKRKKARAKLVKK 1486

Query: 3093 DADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCS 3272
            D DR+I V                  +P+ILL Q+A +VAKKVYI+S+G I+ CQ  +C 
Sbjct: 1487 DTDRAIYVAARGMHFEAHFKFI---NEPNILLAQIARHVAKKVYIQSSGKIDQCQVTNCK 1543

Query: 3273 NGQVLCH-------SNVSAEEKKRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLK 3431
              QV+ +        ++  EEK++  AL T GVDF AFW +Q+ +DV  IYSNNI +ML+
Sbjct: 1544 ESQVIYYGKDPKTREDIKPEEKEKVQALHTTGVDFHAFWRLQDFIDVRYIYSNNIQAMLE 1603

Query: 3432 TYGVEAARESIIREVSHVFNSYGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPF 3611
            TYGVEAARE+IIRE+ HVF SYGI+V+ RHL+LIADFMTHSGGY PMSR GGIAESVSPF
Sbjct: 1604 TYGVEAARETIIREIKHVFGSYGISVNTRHLSLIADFMTHSGGYRPMSRLGGIAESVSPF 1663

Query: 3612 SKITFETASKFIVEAALYGLTDDLESPSARVCLGLPVKVGTGCFDVMQKVDI 3767
            SK+TFETASKFIVEAA YG  D L++PSAR+CLGLPVK+GTG FD+MQK+++
Sbjct: 1664 SKMTFETASKFIVEAASYGQVDKLDTPSARICLGLPVKMGTGSFDLMQKLEV 1715


>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
            gi|557523327|gb|ESR34694.1| hypothetical protein
            CICLE_v10004132mg [Citrus clementina]
          Length = 1715

 Score = 1374 bits (3556), Expect = 0.0
 Identities = 752/1312 (57%), Positives = 902/1312 (68%), Gaps = 57/1312 (4%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            LLEKK+G+FRQK+MGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN+ K
Sbjct: 433  LLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVK 492

Query: 183  LRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDIDF 362
            LRD+IING+EIHPGATHY DK S   L             KL +SRG + QPGK  D +F
Sbjct: 493  LRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGR-KLDTSRGAIVQPGKDSDNEF 551

Query: 363  EGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 542
            EGK+V RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE
Sbjct: 552  EGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 611

Query: 543  MNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRDEY 722
            MNVHFPQDE+SRAEAYNIVNANNQYV PS G+P+R+LIQDHI+SA LLTKKDTFL+RDE+
Sbjct: 612  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 671

Query: 723  SQLLYXXXXXXXXXXXXXCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNH 899
             QLLY              KPGQ+V +  SE E+  L PAI KPEPLWTGKQVITAVLNH
Sbjct: 672  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 731

Query: 900  ITKGHPPFTVEKEGKIPREYFGSNTGEDDLSV---------------------------- 995
            IT+G PPF VE+ GK+P+++F +    D  S                             
Sbjct: 732  ITRGRPPFIVERGGKLPQDFFKTRFNADKQSGRKKNDKGKLSKTNKMHKDKSGKKKEVVE 791

Query: 996  ----ERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAG 1163
                E K +              L + KNDLVRGVIDKAQF  YGLVHTVQELYG  TAG
Sbjct: 792  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAG 851

Query: 1164 ILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXX 1343
             LLSA SRLFTVFLQMHGFTCGVDDLLILK ++ ERK  L   ++ G             
Sbjct: 852  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG------------- 898

Query: 1344 RKDIRNVYSKFLGIKYD-EIDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLS-NASTEV 1517
                + V+ + L ++   EIDP +L +EIE  +   G+      D +M   L+ + S+ V
Sbjct: 899  ----KRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSV 954

Query: 1518 NKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLP 1697
              DL  +GLLKP  KN  SLMTT+GAKG  VNFQQ+SS LGQQ+LEGKRVPRMVSGKTLP
Sbjct: 955  INDLLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLP 1014

Query: 1698 SFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1877
            SF PWDW+PRAGGFI D FLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL
Sbjct: 1015 SFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1074

Query: 1878 ECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKS 2057
            ECLK+ YD++VRDADGSI+QF YGEDGVDVHQTSFISKF AL  N +++ +K    LD S
Sbjct: 1075 ECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAANQEMIYKKCSGQLDAS 1134

Query: 2058 NSYIEHLPPKLEKKAREFIKGVPEKKKHIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQS 2237
            N+YI  LP  L+  A +F          +  +DF+KL+ HK+  SLAQPGEPVG+LAAQS
Sbjct: 1135 NAYIMELPDALKDNAEKFADKF--LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLAAQS 1192

Query: 2238 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIA 2417
            VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL  AS +IKTP++TCPLL  K+ D+ A
Sbjct: 1193 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKTEDD-A 1251

Query: 2418 KGLAQTLKKVTVGDITENIYVGLRHHL-----YSRVYTLAMNLYRP---ASNSGISLKDY 2573
            K LA  LKK+TV DI + I V +R           VY L M LY+P    + + I+L+D+
Sbjct: 1252 KRLADKLKKITVADIVKKISVKVRAFTSHDGQACTVYVLTMELYKPKNYPTYTDITLEDW 1311

Query: 2574 KETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQPSQSKASKETDEEVSG----MRGEEN 2741
            +E L + FVRELED I N +  + +++GI+        KAS ETD+E SG     RG+  
Sbjct: 1312 EEILEVVFVRELEDTIQNHLLLLSKINGIKNVASGLTQKASNETDQEGSGNVSQCRGD-- 1369

Query: 2742 DDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLD 2921
            DDD D +             K+K+++TDE DY+D SE E N+GV + GF  E +     +
Sbjct: 1370 DDDADDADGEEAEDLGMDAHKQKQRATDEKDYEDGSEGEMNDGVSAAGFGSEIDQA---E 1426

Query: 2922 TEMDGDDVSRNSQDAEMDGD-DDASNLPSESQSP--XXXXXXXXXXXXXXXXXXXQLSRK 3092
            +E+D D      +D     + +++ +  SE+  P                     +L +K
Sbjct: 1427 SEIDDDQAETEIEDDRATNEIENSQDQASENLKPFTPKSSKKKSKSKTKRKKARAKLVKK 1486

Query: 3093 DADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCS 3272
            D DR+I V                  +P+ILL Q+A +VAKKVYI+S+G I+ CQ  +C 
Sbjct: 1487 DTDRAIYVAARGMHFEAHFKFI---NEPNILLAQIARHVAKKVYIQSSGKIDQCQVTNCK 1543

Query: 3273 NGQVLCH-------SNVSAEEKKRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLK 3431
              QV+ +        ++  EEK++  AL T GVDF AFW++Q+ +DV  IYSNNI +ML+
Sbjct: 1544 ESQVIYYGKDPKKREDIKPEEKEKVQALHTTGVDFHAFWQLQDFIDVRYIYSNNIQAMLE 1603

Query: 3432 TYGVEAARESIIREVSHVFNSYGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPF 3611
            TYGVEAARE+IIRE+ HVF SYGI+V+ RHL+LIADFMTHSGGY PMSR GGIAESVSPF
Sbjct: 1604 TYGVEAARETIIREIKHVFGSYGISVNTRHLSLIADFMTHSGGYRPMSRLGGIAESVSPF 1663

Query: 3612 SKITFETASKFIVEAALYGLTDDLESPSARVCLGLPVKVGTGCFDVMQKVDI 3767
            SK+TFE ASKFIVEAA YG  D L++PSAR+CLGLPVK+GTG FD+MQK+++
Sbjct: 1664 SKMTFEIASKFIVEAASYGQVDKLDTPSARICLGLPVKMGTGSFDLMQKLEV 1715


>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
            gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
            putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score = 1370 bits (3545), Expect = 0.0
 Identities = 747/1285 (58%), Positives = 892/1285 (69%), Gaps = 30/1285 (2%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            LLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN+ K
Sbjct: 432  LLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVK 491

Query: 183  LRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDIDF 362
            LR+AIINGSE HPGATHY DK S   L             KLPSSRG + QPGK+ D +F
Sbjct: 492  LREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISISR-KLPSSRGAIAQPGKNLDYEF 550

Query: 363  EGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 542
            EGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCSTYNADFDGDE
Sbjct: 551  EGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDE 610

Query: 543  MNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRDEY 722
            +NVHFPQDEISRAEAYNIVNANNQYV PS GEPIRALIQDHI+SAVLLTK+DTFLSRDE+
Sbjct: 611  INVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEF 670

Query: 723  SQLLYXXXXXXXXXXXXXCKPGQKVCL-VSEDEMQTLQPAILKPEPLWTGKQVITAVLNH 899
            +QLLY              KPGQKV +  SE+ M  + PAILKP+PLWTGKQVI++VL+H
Sbjct: 671  NQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSH 730

Query: 900  ITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVE---------RKTSXXXXXXXXXXXXXI 1052
            IT+G PPFTV K  KIPR++F +   ++  S           +K                
Sbjct: 731  ITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEK 790

Query: 1053 LYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGV 1232
            + + +NDLVRGVIDKAQF  YGLVHTVQELYG  TAGILLS FSRLFTVFLQMHGFTCGV
Sbjct: 791  ILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGV 850

Query: 1233 DDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYD-EIDPK 1409
            DDLLI++ +DIERK++LE C+                 K +   + +  G+K + E  P 
Sbjct: 851  DDLLIMEDKDIERKKQLEDCE-----------------KKVTEAHYELFGVKVNSETAPT 893

Query: 1410 ELPNEIEYGICRYGEVGTTSLDNEMRKHLS-NASTEVNKDLFVKGLLKPFPKNCFSLMTT 1586
            EL  EIE  I R GE   T+LD +M   L+ N+S  V  +L  +GL+K   +NC SLMTT
Sbjct: 894  ELQLEIERTIRRDGETALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTT 953

Query: 1587 TGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGL 1766
            +GAKG  VNFQQ+SS LGQQ+LEGKRVPRMVSGKTLP F PWDW+ RAGGFISD FL+GL
Sbjct: 954  SGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGL 1013

Query: 1767 HPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSY 1946
             PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK+ YDHTVRDADGSI+QF Y
Sbjct: 1014 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIY 1073

Query: 1947 GEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVP 2126
            GEDG+DVHQTSFI+KF+AL  N  ++ EK    L + +   + LP  L  KA +FI+   
Sbjct: 1074 GEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIREEI 1133

Query: 2127 EKKKH--IDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEM 2300
            +K +H  I  +DF+ L+  K+ SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEM
Sbjct: 1134 KKYQHQKIKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEM 1193

Query: 2301 NVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYV 2480
            NVTLGIPRLQEILMTAS++I+TP+MTCPL K K T E A  LA  +KK+TV DI E++ V
Sbjct: 1194 NVTLGIPRLQEILMTASIDIRTPVMTCPLHKGK-TKEDALCLANKMKKITVADILESMEV 1252

Query: 2481 GLRHHLYSR-----VYTLAMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQIN 2636
             +            +Y L M L +P     NS I++KD +  L + F+RELEDAI N + 
Sbjct: 1253 SVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLV 1312

Query: 2637 AIKRMHGIQAFDQPSQSKASKETDEEVSGMRGEE--NDDDGDVSXXXXXXXXXXXXQKRK 2810
             + ++ GI+ F   SQ  AS E DE+VS  R  E  NDDD D                  
Sbjct: 1313 LLSKISGIKKFMPDSQRNASNEMDEDVSEGRSRETKNDDDDD------------------ 1354

Query: 2811 RQSTDEVDYDDASED-EPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDD 2987
                D+ D ++ +ED   +   L +  +  ++    +   M G D  ++         ++
Sbjct: 1355 ---DDDADDEERAEDLGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLEN 1411

Query: 2988 ASNLPSESQSPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXD 3167
             SN  S  +                     +  RK++DR+I                   
Sbjct: 1412 RSNPKSREEK--------TGSEPKRKKMKAKFVRKESDRAI---FNAIRGLCFEVHFKLK 1460

Query: 3168 EDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCH-----SNVSAEEKKRNSA 3332
             +PHILL Q+A   AKKVYI+S G I+ C+  DCS  QV  +        S  +K++  A
Sbjct: 1461 NEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKEKIQA 1520

Query: 3333 LLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNSYGITVD 3512
            L T GVDF AFW+M++++DV  +YSN+IH+ML TYGVEAARE+IIRE+SHVF SYGI V+
Sbjct: 1521 LHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVN 1580

Query: 3513 IRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLTDDLESP 3692
            IRHLTLIADFMTHSG Y PMSR GGIAES+SPFSK++FETASKFIVEAA +GL D+LE+P
Sbjct: 1581 IRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETP 1640

Query: 3693 SARVCLGLPVKVGTGCFDVMQKVDI 3767
            S+R+CLGLPVK+GTG FD+MQKV+I
Sbjct: 1641 SSRICLGLPVKMGTGSFDLMQKVEI 1665


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score = 1365 bits (3533), Expect = 0.0
 Identities = 750/1279 (58%), Positives = 900/1279 (70%), Gaps = 24/1279 (1%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            LLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT WN+ K
Sbjct: 408  LLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQK 467

Query: 183  LRDAIINGSEIHPGATHYADK-SSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDID 359
            LR+AIING E HPGATHY DK ++V L              KLPSSRGVV   G   D +
Sbjct: 468  LRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQG-CDDYE 526

Query: 360  FEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS-TYNADFDG 536
            FEGKIV+RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS TYNADFDG
Sbjct: 527  FEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSITYNADFDG 586

Query: 537  DEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRD 716
            DEMNVHFPQDEISRAEAYNIVNANNQYV P+ GEPIRALIQDHIISAVLLTKKDTFL+ D
Sbjct: 587  DEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFD 646

Query: 717  EYSQLLYXXXXXXXXXXXXXCKPGQKVCLVSED-EMQTLQPAILKPEPLWTGKQVITAVL 893
            E+SQLLY              KPGQK+  +  D EM  + PA+ KPEPLWTGKQV+TA+L
Sbjct: 647  EFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALL 706

Query: 894  NHITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKND 1073
            +HIT+G PPF VEK+ KIPR +   + G    S +++ +              L + KN+
Sbjct: 707  DHITQGSPPFFVEKDVKIPRGFLILDEGN---SKKKEHTKVDKLKAARLDDDSLLIFKNE 763

Query: 1074 LVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILK 1253
            LVRGVIDKAQFG YGLVHTVQELYG  TAG+LLS  SRLFTVFLQ HGFTCGVDDLL+++
Sbjct: 764  LVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIE 823

Query: 1254 YRDIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDE-IDPKELPNEIE 1430
              D ER+++L+ C+  G                   V+  FL +K  E +DP  L   IE
Sbjct: 824  CMDKEREKQLQICEKIG-----------------EQVHLGFLKVKDGEKLDPMTLQLNIE 866

Query: 1431 YGICRYGEVGTTSLDNEMRKHLSN--ASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGG 1604
              I   GE   TSLD +M   L+    +++V KDL  +GLLKP  KNC SLMTT+GAKGG
Sbjct: 867  KTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGG 926

Query: 1605 MVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYY 1784
              NFQQ+SS LGQQ LEGKRVPRMVSGKTLP F PWDW+ RAGGFI D FLTGL PQEYY
Sbjct: 927  TANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYY 986

Query: 1785 FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVD 1964
            FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+CYDHTVRDADGS+IQF YGEDGVD
Sbjct: 987  FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVD 1046

Query: 1965 VHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKK-- 2138
            VH+T+FI+KF+AL  N  +L E   H L K N +I  LP  L +K  EFI     K K  
Sbjct: 1047 VHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKG-EFIYNSLSKDKVP 1105

Query: 2139 -HIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLG 2315
              +  EDF++L+ +KY SSLAQPGEPVGVLAAQS+GEPSTQMTLNTFH AGRGEMNVTLG
Sbjct: 1106 GLVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLG 1165

Query: 2316 IPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGL--- 2486
            IPRLQEILMTAS +IKTPIMTCP LKE  + ++AKGLA  LKK+TV DI E++ V +   
Sbjct: 1166 IPRLQEILMTASQDIKTPIMTCP-LKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPF 1224

Query: 2487 --RHHLYSRVYTLAMNLY---RPASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRM 2651
              R      +Y L ++ Y     A +  IS +D + TL   F+ ELE  I  ++  + ++
Sbjct: 1225 SQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKI 1284

Query: 2652 HGIQAFDQPSQSKASKETDEEVSGMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEV 2831
            +GI+ F   SQSK S E D EVS  R EE DDD + +            +K+K Q+ DE+
Sbjct: 1285 NGIKXFVPDSQSKGSSEGD-EVSSSRQEEMDDDDEGNDLDVAEDLGSDXEKQKLQANDEM 1343

Query: 2832 DYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSES 3011
            DY+D SED+ N    STGFE E + G+  + E+  +D+    +D+  +   +  ++ S+S
Sbjct: 1344 DYEDDSEDDLNAKESSTGFESEVDQGD--EAEITNNDMIEIVKDSASENQPEIVDV-SKS 1400

Query: 3012 QSPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQ 3191
             S                    +L RK+ DRSI V                  +PH LL 
Sbjct: 1401 MS----KEKTTETSKEKKKVKSELVRKETDRSIFV---EAKENHFEVHFKFTNEPHTLLS 1453

Query: 3192 QVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCH-------SNVSAEEKKRNSALLTAGV 3350
            Q+    A+KV I+ +G I  CQ+I C  GQV+ H        N+  EEK++  AL T+GV
Sbjct: 1454 QIVQRAAQKVSIQRSGKIIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGV 1513

Query: 3351 DFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNSYGITVDIRHLTL 3530
            DFK  WEMQ+ LDV  IYSN+IH+ML+TYGVEAAR +IIRE+ ++F SYGI+V+IRHL+L
Sbjct: 1514 DFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSL 1573

Query: 3531 IADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLTDDLESPSARVCL 3710
            +AD+MTHSGGY PMSR GGI++S+SPFS++TFETA KFIV+AAL+G  D+LE+PS+R+CL
Sbjct: 1574 VADYMTHSGGYRPMSRLGGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICL 1633

Query: 3711 GLPVKVGTGCFDVMQKVDI 3767
            GLPVK+GTG FD+MQK+++
Sbjct: 1634 GLPVKMGTGSFDLMQKIEV 1652


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score = 1362 bits (3526), Expect = 0.0
 Identities = 744/1279 (58%), Positives = 897/1279 (70%), Gaps = 24/1279 (1%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            LLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT WN+ K
Sbjct: 402  LLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQK 461

Query: 183  LRDAIINGSEIHPGATHYADK-SSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDID 359
            LR+AIING E HPGATHY DK ++V L              KLPSSRGVV   G   D +
Sbjct: 462  LRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQG-CDDYE 520

Query: 360  FEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS-TYNADFDG 536
            FEGKIV+RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS TYNADFDG
Sbjct: 521  FEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSITYNADFDG 580

Query: 537  DEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRD 716
            DEMNVHFPQDEISRAEAYNIVNANNQYV P+ GEPIRALIQDHIISAVLLTKKDTFL+ D
Sbjct: 581  DEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFD 640

Query: 717  EYSQLLYXXXXXXXXXXXXXCKPGQKVCLVSED-EMQTLQPAILKPEPLWTGKQVITAVL 893
            E+SQLLY              KPGQK+  +  D EM  + PA+ KPEPLWTGKQV+TA+L
Sbjct: 641  EFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALL 700

Query: 894  NHITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKND 1073
            +HIT+G PPF VEK+ KIPR +F      ++ S +++ +              L + KN+
Sbjct: 701  DHITQGSPPFFVEKDVKIPRGFFKCRDMGNNSSKKKEHTKVDKLKAARLDDDSLLIFKNE 760

Query: 1074 LVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILK 1253
            LVRGVIDKAQFG YGLVHTVQELYG  TAG+LLS  SRLFTVFLQ HGFTCGVDDLL+++
Sbjct: 761  LVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIE 820

Query: 1254 YRDIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDE-IDPKELPNEIE 1430
              D ER+++L+ C+  G                   V+  FL +K  E +DP  L   IE
Sbjct: 821  CMDKEREKQLQICEKIG-----------------EQVHLGFLKVKDGEKLDPMTLQLNIE 863

Query: 1431 YGICRYGEVGTTSLDNEMRKHLSN--ASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGG 1604
              I   GE   TSLD +M   L+    +++V KDL  +GLLKP  KNC SLMTT+GAKGG
Sbjct: 864  KTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGG 923

Query: 1605 MVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYY 1784
              NFQQ+SS LGQQ LEGKRVPRMVSGKTLP F PWDW+ RAGGFI D FLTGL PQEYY
Sbjct: 924  TANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYY 983

Query: 1785 FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVD 1964
            FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+CYDHTVRDADGS+IQF YGEDGVD
Sbjct: 984  FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVD 1043

Query: 1965 VHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKK-- 2138
            VH+T+FI+KF+AL  N  +L E   H L K N +I  LP  L +K  EFI     K K  
Sbjct: 1044 VHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKG-EFIYNSLSKDKVP 1102

Query: 2139 -HIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLG 2315
              +  EDF++L+ +KY SSLAQPGEPVGVLAAQS+GEPSTQMTLNTFH  GRGEMNVTLG
Sbjct: 1103 GLVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHVGRGEMNVTLG 1162

Query: 2316 IPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGL--- 2486
            I RLQEILMTAS +IKTPIMTCP LKE  + ++AKGLA  LKK+TV DI E++ V +   
Sbjct: 1163 ILRLQEILMTASQDIKTPIMTCP-LKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPF 1221

Query: 2487 --RHHLYSRVYTLAMNLY---RPASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRM 2651
              R      +Y L ++ Y     A +  IS +D + TL   F+ ELE  I  ++  + ++
Sbjct: 1222 SQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKI 1281

Query: 2652 HGIQAFDQPSQSKASKETDEEVSGMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEV 2831
            +GI+ F   SQSK S E DE  S  + E +DDD + +            +K+K Q+ DE+
Sbjct: 1282 NGIKNFVPDSQSKGSSEGDEVSSSRQKENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEM 1341

Query: 2832 DYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSES 3011
            DY+D SED+ N    STGFE E + G+  + E+  +D+    +D+  +   +  ++ S+S
Sbjct: 1342 DYEDDSEDDLNAKESSTGFESEVDQGD--EAEITNNDMIEIVKDSASENQPEIVDV-SKS 1398

Query: 3012 QSPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQ 3191
             S                    +L RK+ DRSI V                  +PH LL 
Sbjct: 1399 MS----KEKTTETSKEKKKVKSELVRKETDRSIFV---EAKENHFEVHFKFTNEPHTLLS 1451

Query: 3192 QVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCH-------SNVSAEEKKRNSALLTAGV 3350
            Q+    A+KV I+ +G I  CQ+I C  GQV+ H        N+  EEK++  AL T+GV
Sbjct: 1452 QIVQRAAQKVSIQRSGKIIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGV 1511

Query: 3351 DFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNSYGITVDIRHLTL 3530
            DFK  WEMQ+ LDV  IYSN+IH+ML+TYGVEAAR +IIRE+ ++F SYGI+V+IRHL+L
Sbjct: 1512 DFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSL 1571

Query: 3531 IADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLTDDLESPSARVCL 3710
            +AD+MTHSGGY PMSR GGI++S+SPFS++TFETA KFIV+AAL+G  D+LE+PS+R+CL
Sbjct: 1572 VADYMTHSGGYRPMSRLGGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICL 1631

Query: 3711 GLPVKVGTGCFDVMQKVDI 3767
            GLPVK+GTG FD+MQK+++
Sbjct: 1632 GLPVKMGTGSFDLMQKIEV 1650


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score = 1337 bits (3461), Expect = 0.0
 Identities = 728/1282 (56%), Positives = 876/1282 (68%), Gaps = 27/1282 (2%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            LLEKK+GIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRL+YPERVTPWN+ K
Sbjct: 414  LLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLSYPERVTPWNVVK 473

Query: 183  LRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDIDF 362
            LR+AI+NG E HPGATHYADK S+  L             KLP+SRGV+   GK  D +F
Sbjct: 474  LRNAILNGPESHPGATHYADKVSIVKLPPKGKLLSLTSR-KLPTSRGVILHQGKISDHEF 532

Query: 363  EGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 542
            EGK+V RHL+DGD+VLVNRQPTLHKPSIMAH+VRVLKGEKT+RMHYANCSTYNADFDGDE
Sbjct: 533  EGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHIVRVLKGEKTVRMHYANCSTYNADFDGDE 592

Query: 543  MNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRDEY 722
            +NVHFPQDEISRAEAYNIVNANNQYV P+ G+PIRALIQDHI+SA LLTKKDTFLS +E+
Sbjct: 593  INVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSYEEF 652

Query: 723  SQLLYXXXXXXXXXXXXXCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNH 899
            +QLLY              K GQKV +  SE EM    PAI KPEPLWTGKQVI+A+L +
Sbjct: 653  NQLLYSSGVSMAGLGSFYGKHGQKVFISNSESEMFLFPPAIWKPEPLWTGKQVISALLYY 712

Query: 900  ITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLV 1079
            IT+G PPFT EK  KIP  +F +   +     E  +               L + KNDLV
Sbjct: 713  ITRGSPPFTAEKNAKIPSNFFKTQIRKGKRYTEDTSKKKDKPDEDK-----LLIYKNDLV 767

Query: 1080 RGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYR 1259
            RGV+DKAQFG YG++HTVQELYG   AG LLSA SRLFT FLQMHGFTCGVDDL++ + +
Sbjct: 768  RGVVDKAQFGDYGMIHTVQELYGSNVAGNLLSALSRLFTTFLQMHGFTCGVDDLMLTEGK 827

Query: 1260 DIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKY-DEIDPKELPNEIEYG 1436
            D+ER  +L+ C+  G                  +V+ +F+G+K  D IDP  L   IE  
Sbjct: 828  DVERMNQLKSCEIIGD-----------------SVHREFIGVKNSDNIDPVTLQLNIEKK 870

Query: 1437 ICRYGEVGTTSLDNEMRKHL-SNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVN 1613
            I   GE   T LD +M  +L S  S+ + K L  +G+LKP  KNC SLMTT+GAKG MVN
Sbjct: 871  IRSNGEAALT-LDRKMTSNLNSRTSSGILKKLLSEGILKPSGKNCISLMTTSGAKGSMVN 929

Query: 1614 FQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHC 1793
            FQQ+SS LGQQ+LEGKRVPRMVSGKTLP F PWD SPRAGGFI D FLT LHPQEYYFHC
Sbjct: 930  FQQISSHLGQQELEGKRVPRMVSGKTLPCFPPWDCSPRAGGFIIDRFLTALHPQEYYFHC 989

Query: 1794 MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQ 1973
            MAGREGLVDTAVKTSRSGYLQRCL+KNLECLKVCYDHTVRDADGSIIQF YGEDGVDVHQ
Sbjct: 990  MAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQ 1049

Query: 1974 TSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKHIDDE 2153
            TSFI++F AL  N +++   +   LD+S+ YI  LP  LE KA +F K        ++  
Sbjct: 1050 TSFITEFGALSTNKELVFSNYCRQLDRSSPYINKLPEALEGKAEKFSK--QRNLGSMEQA 1107

Query: 2154 DFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 2333
            DF++LM HKY S LAQPGEPVGVLA+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQE
Sbjct: 1108 DFLRLMEHKYVSCLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQE 1167

Query: 2334 ILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGL-----RHHL 2498
            ILM A+ +IKTP MTCPL  +KS  + A  LA  LKK+TV DI +++ V +         
Sbjct: 1168 ILMAAARDIKTPFMTCPLRHDKSMKD-AICLADKLKKITVADIIKSMKVSVVPVTVLGGQ 1226

Query: 2499 YSRVYTLAMNLYRPASN---SGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAF 2669
               +Y L M LY+       + I+L D++ETL + FVRELEDAI N +  + ++ GI+ F
Sbjct: 1227 VCSIYKLVMKLYKSKQYPEYTDITLDDWEETLRVNFVRELEDAIQNHMTLLSKISGIKKF 1286

Query: 2670 DQPSQSKASKETDEEVSG-----MRGEENDDD----GDVSXXXXXXXXXXXXQKRKRQST 2822
                QS  S  +++  S       +G+ NDDD    G V             QKRK Q T
Sbjct: 1287 KTDPQSNYSNSSEDAHSNGSESEKKGQNNDDDDEDGGGVEDTEGYEDLGSDAQKRKLQGT 1346

Query: 2823 DEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLP 3002
            DEVDY+D  E+E ++G LS   E ++          DG DV  N     +   +++  L 
Sbjct: 1347 DEVDYEDGPEEETHDGELSEEIEGDE----------DGSDVDANENYNNVTDANNSEGLE 1396

Query: 3003 SESQSPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHI 3182
              S+S                    + + K  DR+I V                  +PHI
Sbjct: 1397 KPSKSKTIDEKQNLKREKKKS----EPTTKKYDRAIFVEAKGKHFEIHFRFTG---EPHI 1449

Query: 3183 LLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCHSN-------VSAEEKKRNSALLT 3341
            LL Q+A   AKKV I++ G +  C+ I C    V+ +         +SA EK++  AL T
Sbjct: 1450 LLTQIAQRTAKKVCIQNFGKVGECKAITCKESGVIYYGKDGRKRIEISASEKEQIPALQT 1509

Query: 3342 AGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNSYGITVDIRH 3521
            +GV FK FWE++++LDV  IYSNN+H+ML  YGVEAARE+IIREV +VF SYGI+V+IRH
Sbjct: 1510 SGVHFKTFWELEDDLDVRYIYSNNVHAMLNAYGVEAARETIIREVQNVFKSYGISVNIRH 1569

Query: 3522 LTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLTDDLESPSAR 3701
            LTLIADFMTH+G Y PM+R+G IA+S SPF K+ FETA  FIVEAA +G  D+LE+PSAR
Sbjct: 1570 LTLIADFMTHTGSYRPMNRTGSIADSTSPFIKMCFETAGNFIVEAAYHGQVDNLETPSAR 1629

Query: 3702 VCLGLPVKVGTGCFDVMQKVDI 3767
            +CLGLPVK+GTGC D++QK++I
Sbjct: 1630 ICLGLPVKMGTGCHDLIQKLEI 1651


>ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
            gi|561018822|gb|ESW17626.1| hypothetical protein
            PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score = 1336 bits (3457), Expect = 0.0
 Identities = 728/1282 (56%), Positives = 889/1282 (69%), Gaps = 27/1282 (2%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            LLEKK+GIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRL+YPERVTPWN+  
Sbjct: 402  LLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLSYPERVTPWNVTM 461

Query: 183  LRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDIDF 362
            LR+AI+NG + HPGATHY D+ +   L             KLPSSRGV+   GK  D +F
Sbjct: 462  LRNAILNGPQSHPGATHYTDQQATVKLPPNGKLLSFISR-KLPSSRGVILDHGKISDQEF 520

Query: 363  EGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 542
            EGKIV RHL+DGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCSTYNADFDGDE
Sbjct: 521  EGKIVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDE 580

Query: 543  MNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRDEY 722
            +NVHFPQDEISRAEAYNIVNANNQYV P+ G+PIRALIQDHI+SA LLTKKDTF++ + +
Sbjct: 581  INVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFITYEVF 640

Query: 723  SQLLYXXXXXXXXXXXXXCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNH 899
             QLLY              K GQKV +  SE EM    PAI KPEPLWTGKQVI+A+L +
Sbjct: 641  IQLLYSSGVSMTGLGSFSGKHGQKVFMTNSEFEMFLFPPAIWKPEPLWTGKQVISALLYY 700

Query: 900  ITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLV 1079
            IT+  PPFTVEK  KIP  +F +   +     +R T               L + KNDLV
Sbjct: 701  ITRDSPPFTVEKNAKIPSNFFKTQVRDG----KRHTRDKSRNKVEPDDEDKLLIYKNDLV 756

Query: 1080 RGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYR 1259
            RGV+DKAQFG YG++HTVQELYG K AG LLSA SRLFT FLQMHGFTCGVDDL+I + +
Sbjct: 757  RGVVDKAQFGDYGIIHTVQELYGSKVAGNLLSALSRLFTTFLQMHGFTCGVDDLMITEEK 816

Query: 1260 DIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGI-KYDEIDPKELPNEIEYG 1436
            D+ER  +L  C++ G               DI  V+ +F+G+   D IDP  L   IE  
Sbjct: 817  DVERMDQLRSCEEIG---------------DI--VHREFIGVMNSDIIDPITLQLNIEKK 859

Query: 1437 ICRYGEVGTTSLDNEMRKHL-SNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVN 1613
            I   GE   T LD +M  +L S  S+ + KDL   G+LKP  KNC SLMTT+GAKG MVN
Sbjct: 860  IRSNGEAALTYLDRKMTSNLNSRTSSGILKDLLSDGILKPSGKNCISLMTTSGAKGSMVN 919

Query: 1614 FQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHC 1793
            FQQ+SS LGQQ+LEGKRVPRMVSGKTLP F PWD SPRAGGFI D FLTGLHPQEYYFHC
Sbjct: 920  FQQISSHLGQQELEGKRVPRMVSGKTLPCFAPWDCSPRAGGFIIDRFLTGLHPQEYYFHC 979

Query: 1794 MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQ 1973
            MAGREGLVDTAVKTSRSGYLQRCL+KNLECLKVCYDHTVRDADGSIIQF YGEDGVDVH 
Sbjct: 980  MAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHH 1039

Query: 1974 TSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKK--HID 2147
            TSFI+KF+AL  N +++       LD+S+ YI  LP  L++KA  F +   +++    + 
Sbjct: 1040 TSFINKFEALSTNKELVYGNCCRQLDRSSPYINKLPDALKEKAENFFRDSLKQRNLGSLK 1099

Query: 2148 DEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRL 2327
              +F+KLM HKY S LAQPGE VGVLA+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRL
Sbjct: 1100 RAEFLKLMEHKYVSCLAQPGESVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRL 1159

Query: 2328 QEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITEN-----IYVGLRH 2492
            QEI+M A+ +IKTP MTCPL   KS +E A  LA  LKK+TV DI ++     + V +  
Sbjct: 1160 QEIVMAAARDIKTPFMTCPLRSNKSMEE-AICLADKLKKITVADIIKSMKVSVVPVSVLG 1218

Query: 2493 HLYSRVYTLAMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQ 2663
                 +Y L M LY+P      S I+L+D+++TL I FVRELEDAI N +  + ++ GI+
Sbjct: 1219 GQVCSIYKLVMKLYKPKQYPKYSDITLEDWEDTLRISFVRELEDAIENHMALLSKISGIK 1278

Query: 2664 AF--DQPSQSKASKE-----TDEEVSGMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQST 2822
             F  D  S S +S++     ++ E  G   +++DDD  V             QKRKRQ T
Sbjct: 1279 KFKTDPQSHSNSSEDAHGNGSESETKGKSNDDDDDDDVVEDTEGYEDLGSDAQKRKRQGT 1338

Query: 2823 DEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLP 3002
            DEVDY+D  E+E ++GVLS   E +++N +        D+++ ++ D+E  G D+     
Sbjct: 1339 DEVDYEDGPEEETHDGVLSEEIENDEDNVD--------DNMTLDASDSE--GLDEL---- 1384

Query: 3003 SESQSPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHI 3182
            SES+S                    + + +  DR++ V                  +P I
Sbjct: 1385 SESKS------IFEKDSLKREKKKSRPTTRKYDRAVFVKAKGMHFQIHFKFTG---EPDI 1435

Query: 3183 LLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCH-------SNVSAEEKKRNSALLT 3341
            LL ++AL  AKKV I+++G +  C+ + C    V+ +        ++ A  K++  AL T
Sbjct: 1436 LLAEIALRSAKKVCIQNSGRVGECKAVTCKESGVMYYGEDSRKRDDIPASVKEKIPALQT 1495

Query: 3342 AGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNSYGITVDIRH 3521
            +GV FK FWE+Q++LDV  IYSNN+H+ML  YGVEAARE+IIREV +VF SYGI+V+IRH
Sbjct: 1496 SGVHFKTFWELQDDLDVRYIYSNNVHAMLNAYGVEAARETIIREVQNVFKSYGISVNIRH 1555

Query: 3522 LTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLTDDLESPSAR 3701
            LTLIADFMTHSGGY PM+R+G IA+  SPF K+ FETASKFIVEAA +G  D+LE+PS+R
Sbjct: 1556 LTLIADFMTHSGGYRPMNRNGSIADCTSPFIKMCFETASKFIVEAAYHGQVDNLETPSSR 1615

Query: 3702 VCLGLPVKVGTGCFDVMQKVDI 3767
            +CLGLPVK+GTGC D++QK++I
Sbjct: 1616 ICLGLPVKMGTGCHDLIQKLEI 1637


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1650

 Score = 1331 bits (3444), Expect = 0.0
 Identities = 727/1280 (56%), Positives = 878/1280 (68%), Gaps = 26/1280 (2%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            LLEKK+GIFRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN+ +
Sbjct: 405  LLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVE 464

Query: 183  LRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDIDF 362
            LR+AI+NG E HPGAT YADK+S  L              KL SSRGV+   GK  D +F
Sbjct: 465  LRNAILNGPETHPGATLYADKTST-LKLPLDRRSRSLTSRKLQSSRGVIMHNGKIHDNEF 523

Query: 363  EGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 542
            EGK+V RHL+DGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCSTYNADFDGDE
Sbjct: 524  EGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDE 583

Query: 543  MNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRDEY 722
            +NVHFPQDEISRAEAYNIVNANNQYV P+ G+PIRALIQDHI+SA LLTKKDTFLS +E+
Sbjct: 584  INVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCEEF 643

Query: 723  SQLLYXXXXXXXXXXXXXCKPGQKVCLVSED-EMQTLQPAILKPEPLWTGKQVITAVLNH 899
            +QLLY              KPGQK+ + + D EM    PAI KPEPLWTGKQVI+A+L +
Sbjct: 644  NQLLYSSGVSMTGMGPFPGKPGQKIFMSNSDSEMFLFPPAIFKPEPLWTGKQVISALLYY 703

Query: 900  ITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLV 1079
            ITKG PPFTVEK  KIP  +F +   E      +K +              L + +NDLV
Sbjct: 704  ITKGSPPFTVEKNAKIPSSFFKTRMREG-----KKRTKDTSIKKDEPDEDKLLIYRNDLV 758

Query: 1080 RGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYR 1259
            RGV+DKAQFG YG+VHTVQE YG  TAGILLSA SRLFT FLQMHGFTCGVDDLL+ + +
Sbjct: 759  RGVVDKAQFGDYGIVHTVQEFYGSNTAGILLSALSRLFTNFLQMHGFTCGVDDLLLTEGK 818

Query: 1260 DIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGI-KYDEIDPKELPNEIEYG 1436
            D ER  +LE C++ G               DI  V+ +F+G+ + D IDP  +   +E  
Sbjct: 819  DSERTNQLESCEEIG---------------DI--VHREFIGVMEGDNIDPITMQLNVEKK 861

Query: 1437 ICRYGEVGTTSLDNEMRKHL-SNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVN 1613
            I   GE   T LD +M  +L S  ST V K L  +G+LKP  KN  SLMTT+GAKG MVN
Sbjct: 862  IRSNGEAAITYLDRKMISNLNSRTSTGVLKVLLSEGILKPSGKNWISLMTTSGAKGSMVN 921

Query: 1614 FQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHC 1793
            FQQ+SS LGQQ+LEGKRVPRMVSGKTLP F  WD SPRAGGFI D FLT L PQEYYFHC
Sbjct: 922  FQQISSHLGQQELEGKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRFLTALRPQEYYFHC 981

Query: 1794 MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQ 1973
            MAGREGLVDTAVKTSRSGYLQRCL+KNLECLKVCYDHTVRDADGSIIQF YGEDGVDVHQ
Sbjct: 982  MAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQ 1041

Query: 1974 TSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKH---I 2144
            TSFI+KF+AL  N +++       LDKS+ YI  LP  L+ KA +FI     K+++   +
Sbjct: 1042 TSFINKFEALSTNKELVYSNCCRELDKSSPYINKLPDALKGKAEKFILDSSSKQRNSGSM 1101

Query: 2145 DDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 2324
               +F+ LM HKY SSLAQPGEPVGVLA+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPR
Sbjct: 1102 THTNFLHLMEHKYVSSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPR 1161

Query: 2325 LQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVG-----LR 2489
            LQEIL  AS +IKTP MTCPL   KS ++  + LA  +KK+TV DI E++ V      ++
Sbjct: 1162 LQEILTAASAHIKTPFMTCPLRPNKSMEDAIR-LADKMKKITVADIIESMKVSVVPVTVQ 1220

Query: 2490 HHLYSRVYTLAMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGI 2660
                  +Y L M L++P      + ++LKD++ETL + FVR LEDAI N I  + ++ GI
Sbjct: 1221 DGRICSIYKLMMKLHKPKHYPKYTDVTLKDWEETLRVSFVRGLEDAIENNIALLAKISGI 1280

Query: 2661 QAFDQPSQSKASKETDEEVS-GMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDY 2837
              F   +Q  +S   +++ S G   +++DDDGD              QK KRQ  D+VDY
Sbjct: 1281 TNFKTDAQPNSSNGAEDDPSNGKTNDDDDDDGDADDTEGAEDLGLDAQKSKRQVVDDVDY 1340

Query: 2838 DDASEDEP-NEGVLS---TGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPS 3005
            DD  E+E   +G LS    G E  K+N    D   DGD       D +  GD+D S++  
Sbjct: 1341 DDGPEEETLEDGELSEDLEGVEDAKDNEYVKD---DGD----GKDDEDGKGDEDGSDIEV 1393

Query: 3006 ESQSPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHIL 3185
                                     +S+K  DR + V                  +PHIL
Sbjct: 1394 NENDKKVTLGANYSQGPEENSKSQPVSKK-FDRRVYVKFEKRHFEIHFKFTG---EPHIL 1449

Query: 3186 LQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCH-------SNVSAEEKKRNSALLTA 3344
            L Q+A   A+KV I++ G +  C+ I C    V+ +         + +  K++  AL T+
Sbjct: 1450 LAQIAQKTAEKVCIQNFGKVGQCKAITCKESGVIYYGEDDSKREEIPSSVKEKIPALQTS 1509

Query: 3345 GVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNSYGITVDIRHL 3524
            G+ FK+FWEMQ++L+V  +YSNN+H++L TYGVEAA+E+IIREV +VF SYGI+V+IRHL
Sbjct: 1510 GIHFKSFWEMQDDLNVRYVYSNNVHAILSTYGVEAAKETIIREVQNVFKSYGISVNIRHL 1569

Query: 3525 TLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLTDDLESPSARV 3704
             LIADFMTHSG Y PMSR G IA+S SPF KI FETAS FIVEAA +G  D+L+SPSAR+
Sbjct: 1570 MLIADFMTHSGCYRPMSRKGSIADSTSPFLKICFETASNFIVEAACHGQVDNLDSPSARI 1629

Query: 3705 CLGLPVKVGTGCFDVMQKVD 3764
            CLGLPVK+GTGC +++QK++
Sbjct: 1630 CLGLPVKMGTGCHELIQKLE 1649


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1660

 Score = 1324 bits (3426), Expect = 0.0
 Identities = 723/1286 (56%), Positives = 882/1286 (68%), Gaps = 32/1286 (2%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            LLEKK+GIFRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN+ +
Sbjct: 409  LLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVE 468

Query: 183  LRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDIDF 362
            LR+AI+NG E HPGAT YADK+S  L              +L SSRGV+   GK  D +F
Sbjct: 469  LRNAILNGPETHPGATLYADKTST-LKLPLDRRSRSLTSRRLQSSRGVIMHNGKIHDNEF 527

Query: 363  EGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 542
            EGK+V RHL+DGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCSTYNADFDGDE
Sbjct: 528  EGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDE 587

Query: 543  MNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRDEY 722
            +NVHFPQDEISRAEAYNIVNANNQYV P+ G+PIRALIQDHI+SA LLTKKDTFLS +E+
Sbjct: 588  INVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCEEF 647

Query: 723  SQLLYXXXXXXXXXXXXXCKPGQKVCLVSED-EMQTLQPAILKPEPLWTGKQVITAVLNH 899
            +QLLY              KPGQK+ + + D EM    PAI KPEPLWTGKQVI+A+L +
Sbjct: 648  NQLLYSSGVSMTGMGPFPGKPGQKIFMSNSDSEMFLFPPAIFKPEPLWTGKQVISALLYY 707

Query: 900  ITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLV 1079
            ITKG PPFTVEK  KIP  +F +   E      +K +              L + KNDLV
Sbjct: 708  ITKGSPPFTVEKNAKIPSSFFKTRMREG-----KKRTKDTSIKKDEPDEDKLLIYKNDLV 762

Query: 1080 RGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYR 1259
            RGV+DKAQFG YG+VHTVQE YG  TAG LLSA SRLFT FLQMHGFTCGVDDLL+ + +
Sbjct: 763  RGVVDKAQFGDYGIVHTVQEFYGSNTAGFLLSALSRLFTNFLQMHGFTCGVDDLLLTEGK 822

Query: 1260 DIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGI-KYDEIDPKELPNEIEYG 1436
            D ER  +LE C++ G               DI  V+ +F+G+ + D IDP  +   +E  
Sbjct: 823  DSERTNQLESCEEIG---------------DI--VHREFIGVMEGDNIDPITMQLNVEKK 865

Query: 1437 ICRYGEVGTTSLDNEMRKHL-SNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVN 1613
            I   GE   T LD +M  +L S  S+ V K+L  +G+LKP  KN  SLMTT+GAKG MVN
Sbjct: 866  IRSNGEAAITYLDRKMISNLNSRTSSGVLKELLSEGILKPSGKNWISLMTTSGAKGSMVN 925

Query: 1614 FQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHC 1793
            FQQ+SS LGQQ+LEGKRVPRMVSGKTLP F  WD SPRAGGFI D FLT L PQEYYFHC
Sbjct: 926  FQQISSHLGQQELEGKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRFLTALRPQEYYFHC 985

Query: 1794 MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQ 1973
            MAGREGLVDTAVKTSRSGYLQRCL+KNLECLKVCYDHTVRDADGSIIQF YGEDGVDVHQ
Sbjct: 986  MAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQ 1045

Query: 1974 TSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKH---I 2144
            TSFI+KF+AL  N +++       LD+S+ YI  LP  L+ KA +FI+    K+++   +
Sbjct: 1046 TSFINKFEALSTNKELVYSNCCRELDESSPYINKLPDALKGKAEKFIRDSSSKQRNSGSM 1105

Query: 2145 DDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 2324
               +F++LM HKY SSLAQPGEPVGVLA+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPR
Sbjct: 1106 THTNFLQLMEHKYVSSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPR 1165

Query: 2325 LQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVG-----LR 2489
            LQEIL  AS +IKTP MTCPL   KS ++  + LA  +KK+TV DI E++ V      ++
Sbjct: 1166 LQEILTAASAHIKTPFMTCPLRPNKSMEDAIR-LADKMKKITVADIIESMKVSVVPVTVQ 1224

Query: 2490 HHLYSRVYTLAMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGI 2660
                  +Y L M L++P      + ++LKD++ETL + FVR LEDAI N I  + ++ GI
Sbjct: 1225 DGRICSIYKLMMKLHKPKHYPKYTDVTLKDWEETLRVSFVRGLEDAIENNIALLAKISGI 1284

Query: 2661 QAFDQPSQSKASKETDEEVSGMR---GEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEV 2831
              F   +Q  +S   +++ S  +    +++DDDGD              QK KRQ  D+V
Sbjct: 1285 TNFKTDAQPNSSNGAEDDPSNGKTNDDDDDDDDGDADDTEGAEDLGLDAQKSKRQVVDDV 1344

Query: 2832 DYDDASEDEP-NEGVLS---TGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNL 2999
            DYDD  E+E   +G LS    G E  K+N +  D   DGD       D +  GD+D S++
Sbjct: 1345 DYDDGPEEETLEDGELSEDLEGVEDAKDNEHVKD---DGD----GKDDEDGKGDEDGSDI 1397

Query: 3000 PSESQSPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPH 3179
                                       +S+K  DR + V                 ++PH
Sbjct: 1398 EVNENDKKVTLGVNYSQGPEENSKSQPVSKK-FDRRVYV---KFEKRHFEIHFKFTDEPH 1453

Query: 3180 ILLQQ----VALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCH-------SNVSAEEKKRN 3326
            ILL Q    +A   A+KV I++ G +  C+ I C    V+ +         + +  K++ 
Sbjct: 1454 ILLAQLLSTIAQKTAEKVCIQNFGKVGQCKAITCKESGVIYYGEDDSKREEIPSSVKEKI 1513

Query: 3327 SALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNSYGIT 3506
             AL T+G+ FK+FWEMQ++L+V  +YSNN+H++L TYGVEAA+E+IIREV +VF SYGI+
Sbjct: 1514 PALQTSGIHFKSFWEMQDDLNVRYVYSNNVHAILSTYGVEAAKETIIREVQNVFKSYGIS 1573

Query: 3507 VDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLTDDLE 3686
            V+IRHL LIADFMTHSG Y PMSR G IA+S SPF KI FETAS FIVEAA +G  D+L+
Sbjct: 1574 VNIRHLMLIADFMTHSGCYRPMSRKGSIADSTSPFLKICFETASNFIVEAACHGQVDNLD 1633

Query: 3687 SPSARVCLGLPVKVGTGCFDVMQKVD 3764
            SPSAR+CLGLPVK+GTGC +++QK++
Sbjct: 1634 SPSARICLGLPVKMGTGCHELIQKLE 1659


>ref|XP_004299740.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Fragaria
            vesca subsp. vesca]
          Length = 1673

 Score = 1321 bits (3419), Expect = 0.0
 Identities = 736/1299 (56%), Positives = 879/1299 (67%), Gaps = 44/1299 (3%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            +LEKK G+FRQK+MGKRVNFACRSVISPDPYLAVNEIGIPP FAL LTYPERVTPWN+ K
Sbjct: 417  MLEKKAGMFRQKLMGKRVNFACRSVISPDPYLAVNEIGIPPIFALTLTYPERVTPWNVFK 476

Query: 183  LRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDIDF 362
            LR+AI+NGSEIHPGATHY DK+S+ L              KLPSS+G  TQ GK  D  +
Sbjct: 477  LRNAIVNGSEIHPGATHYIDKTSIKL--PQKWRERVLLSRKLPSSKGAGTQHGKGSD--Y 532

Query: 363  EGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 542
            E KIV RHLQDGDIVLVNRQPTLHKPSIMAH+VRVLKGEKTLRMHYANCSTYNADFDGDE
Sbjct: 533  ENKIVLRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLKGEKTLRMHYANCSTYNADFDGDE 592

Query: 543  MNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRDEY 722
            MNVHFPQDEISRAEAYN+VNANNQYV P+ G PIRALIQDHIIS++ L+K DTF   DE 
Sbjct: 593  MNVHFPQDEISRAEAYNLVNANNQYVKPTSGFPIRALIQDHIISSLFLSKTDTFFDLDEI 652

Query: 723  SQLLYXXXXXXXXXXXXXCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNH 899
            +QLLY              KPGQKV +  SED MQ   PAI KP   W GKQ+IT +LN 
Sbjct: 653  NQLLYSSSVSACGSETFSGKPGQKVLMSNSEDAMQLPLPAIWKPVRKWPGKQIITTLLNR 712

Query: 900  ITKGHPPFTVEKEGKIPREYFGSNTG-EDDLSVE-----------RKTSXXXXXXXXXXX 1043
            IT G PP T EKE K+P  +F   T  E++ S +           ++             
Sbjct: 713  ITSGSPPLTFEKEAKLPSGFFNCKTPVEEERSAKGHRAKEKQSRIKEAGKDDSREIEEPD 772

Query: 1044 XXILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFT 1223
               L + KN+LVRGVIDK QFG YGLVH V ELYG + AG LLSAFSRL+TV+LQMHGFT
Sbjct: 773  ESKLLIYKNNLVRGVIDKNQFGDYGLVHNVHELYGSEAAGKLLSAFSRLYTVYLQMHGFT 832

Query: 1224 CGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDEID 1403
            CGVDDLL+L+ +D + K++LE C++ G                   V  +F+G++ +E  
Sbjct: 833  CGVDDLLLLQSKDKKMKEQLESCEELG-----------------EKVIREFIGVRQNERK 875

Query: 1404 PKE-LPNEIEYGICRYGEVGTTSLDNEMRKHLSN--ASTEVNKDLFVKGLLKPFPKNCFS 1574
                L ++IE  +   GE  +  LD +M   L+   ++++V K LF KGL KP  KNC  
Sbjct: 876  GALILQSDIEEFLRNNGESVSEMLDRKMTSELNKKISNSDVFKQLFQKGLSKPSFKNCMY 935

Query: 1575 LMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNF 1754
            LMT++GAKGG+ N QQ+++ LGQQ+LEGKRVP+MVSGKTLP F PWDWSPRAGGFI D F
Sbjct: 936  LMTSSGAKGGVANLQQIAAYLGQQELEGKRVPQMVSGKTLPCFPPWDWSPRAGGFIIDRF 995

Query: 1755 LTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSII 1934
            LTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKV YD+TVRDADGSII
Sbjct: 996  LTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVSYDYTVRDADGSII 1055

Query: 1935 QFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFI 2114
            QF YGEDG+DVH TSFI KF+ L  N ++  ++F   +DK N YI+ LPP L++KA    
Sbjct: 1056 QFRYGEDGIDVHLTSFIQKFEKLANNKEMFDKRFGREIDKFNPYIDELPPALKRKAEMSG 1115

Query: 2115 KGVPEKKKHIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRG 2294
              +  K+K+ +    +KLM HK+ SSLAQPGEPVG+LAAQSVGEPSTQMTLNTFH AGR 
Sbjct: 1116 PDLSLKEKNAN----LKLMEHKFLSSLAQPGEPVGILAAQSVGEPSTQMTLNTFHNAGRS 1171

Query: 2295 EMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENI 2474
            EMNVTLGIPRLQEILMTAS +IKTP+MTCPL   K+ D  AK LA  LK++TV DI E++
Sbjct: 1172 EMNVTLGIPRLQEILMTASNDIKTPVMTCPLRMGKAED--AKSLAGRLKRITVADIIESM 1229

Query: 2475 YVGLR-----HHLYSRVYTLAMNLYRPASNSGISLKDYKETLTIQFVRELEDAIHNQINA 2639
             V ++      H   RVY L M  + P   S  S +D++E L ++FVR LEDAI N +  
Sbjct: 1230 KVNIKPFTHQDHQTCRVYELEMTFFIPEHLSKFS-EDWEELLKVKFVRALEDAIQNHLVL 1288

Query: 2640 IKRMHGIQAFDQPSQSKASKETDEE----VSGMRGEENDDDGDVSXXXXXXXXXXXXQKR 2807
            + ++ GI+     S  KAS ETDE+    +S   GE  DDD                QK+
Sbjct: 1289 LSKISGIKDIKADSLPKASNETDEDISFNISQHEGEGGDDDNVDDSGEGVEDFGLDAQKQ 1348

Query: 2808 KRQSTDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDD 2987
            KRQ TDE++YDD  EDE NEG  S  FE E +NG  LD E+D D V+         G  D
Sbjct: 1349 KRQGTDEMEYDDDWEDEFNEGRQSDEFENEIDNGE-LDVEIDKDGVT---------GISD 1398

Query: 2988 ASNLPSESQS------PXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXX 3149
            A++   ES S      P                   +L RK+ DR+  V           
Sbjct: 1399 ANDKMQESCSTGGISKPHSKGKKTKSRDKIKKKTSAKLVRKEYDRATFV---SAKGFHFE 1455

Query: 3150 XXXXXDEDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDC--SNGQVLC----------- 3290
                   +PHILL Q+A   A+ VY+KS+G+I  CQ ID   +  QV C           
Sbjct: 1456 IHFKFTNEPHILLDQIAQKTARNVYVKSSGNILDCQDIDIYGNEDQVFCCWNDPRNKLSG 1515

Query: 3291 HSNVSAEEKKRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIR 3470
              N S EEKK   AL TAGVDF   W++Q++LDVN IYSNNIH+ML TYGVEAARE+II+
Sbjct: 1516 EKNPSEEEKKMR-ALQTAGVDFATLWKLQDDLDVNYIYSNNIHAMLNTYGVEAARETIIK 1574

Query: 3471 EVSHVFNSYGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIV 3650
            E+S+VF  YGI+V+IRHL LIAD+MT SG Y PM+R GGIAES SP +K++FETASKFI 
Sbjct: 1575 EISNVFKVYGISVNIRHLLLIADYMTRSGSYRPMNRFGGIAESTSPMNKMSFETASKFIQ 1634

Query: 3651 EAALYGLTDDLESPSARVCLGLPVKVGTGCFDVMQKVDI 3767
            EAA +G  DDLE+PSAR+CLGLPVKVGTGCFD+M K++I
Sbjct: 1635 EAAYHGEKDDLETPSARICLGLPVKVGTGCFDLMHKMEI 1673


>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1628

 Score = 1321 bits (3419), Expect = 0.0
 Identities = 718/1279 (56%), Positives = 881/1279 (68%), Gaps = 24/1279 (1%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            LL+KK+GIFRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN  K
Sbjct: 397  LLDKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNSAK 456

Query: 183  LRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDIDF 362
            L DAI+NG + HPGA  Y DK+S  L              +L SSRGV+   GK  + +F
Sbjct: 457  LMDAILNGPDTHPGAILYTDKTST-LRLQKDKSLRSSTSRRLQSSRGVIMHHGKIHEHEF 515

Query: 363  EGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 542
            EGK+V RHL+DGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCSTYNADFDGDE
Sbjct: 516  EGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDE 575

Query: 543  MNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRDEY 722
            +NVHFPQDEISRAEAYNIVNANNQYV P+ G+PIRALIQDHI+SA LLTKKDTFLS  E+
Sbjct: 576  INVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCQEF 635

Query: 723  SQLLYXXXXXXXXXXXXXCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNH 899
            +QLLY             CKPGQKV +  SE EM    PAI KPEPLWTGKQVI+A+L +
Sbjct: 636  NQLLYSSGVSMTGMGSFSCKPGQKVLMSNSESEMFLFPPAIFKPEPLWTGKQVISALLCY 695

Query: 900  ITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLV 1079
            ITKG PPFTVEK  KIP  +F + TGE    +++ T              ++Y  +NDLV
Sbjct: 696  ITKGRPPFTVEKNAKIPSSFFKTQTGE----IKKHTKDTSRKKDELEDKLLIY--RNDLV 749

Query: 1080 RGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYR 1259
            RGV+DKAQFG YG+VHTVQE YG  TAGILLSA SRLFT FLQMHGFTCGVDDLLI   +
Sbjct: 750  RGVVDKAQFGDYGMVHTVQEFYGSNTAGILLSALSRLFTNFLQMHGFTCGVDDLLIKVGK 809

Query: 1260 DIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDE-IDPKELPNEIEYG 1436
            D ER  +LE C++ G               DI  V+ +F+G+   E IDP  +   +E  
Sbjct: 810  DSERLNQLESCEEIG---------------DI--VHREFIGVMESENIDPITMQLNVEKK 852

Query: 1437 ICRYGEVGTTSLDNEMRKHL-SNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVN 1613
            I   GE   T LD +M  +L S  S+ V K+L  KG LKP  KN  SLMTT+GAKG MVN
Sbjct: 853  IRSNGEAAITYLDRKMISNLNSRTSSGVLKELLSKGSLKPSGKNWISLMTTSGAKGSMVN 912

Query: 1614 FQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHC 1793
            FQQ+SS LGQQ+LEGKRVPRMVSGKTLP F  WD SPRAGGFI D FLT L PQEYYFHC
Sbjct: 913  FQQISSHLGQQELEGKRVPRMVSGKTLPCFPSWDCSPRAGGFIIDRFLTALRPQEYYFHC 972

Query: 1794 MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQ 1973
            MAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYDHTVRD+DGSIIQF YGEDGVDVHQ
Sbjct: 973  MAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVCYDHTVRDSDGSIIQFHYGEDGVDVHQ 1032

Query: 1974 TSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKH---I 2144
            TSFI+KF+AL  N +++       LD+S+ YI  LP  L+ KA  FI+    K+++   +
Sbjct: 1033 TSFINKFEALSINKELIYSNCCRQLDRSSPYINKLPDALKGKAENFIRDFSSKQRNSSSM 1092

Query: 2145 DDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 2324
             + DF+++M HKY SSLAQPGEPVGVLA+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPR
Sbjct: 1093 KEADFLQVMEHKYVSSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPR 1152

Query: 2325 LQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITEN-----IYVGLR 2489
            L EI++ AS NIKTP MTCPL   KS ++  + LA  +KK+TV DI E+     + V ++
Sbjct: 1153 LHEIVVAASKNIKTPFMTCPLRPNKSMEDAIR-LADKMKKITVADIIESMKVSVVPVAVK 1211

Query: 2490 HHLYSRVYTLAMNLYRPA---SNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGI 2660
                  +Y L M L++P      + ++L+D++ETL + FVRELEDAI N I+ + R+ GI
Sbjct: 1212 EGRICSIYKLTMKLHKPKHYPKYTDVTLEDWEETLRVGFVRELEDAIENHISLLARISGI 1271

Query: 2661 QAFDQPSQSKASKETD---EEVSGMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEV 2831
            + F   S S    + D   E  S   G+ +DDD +V             QK K+++TDEV
Sbjct: 1272 KDFQGKSNSSNGLDNDHSNESASNQNGQTDDDD-EVGDTEDAEEDGFDAQKSKQRATDEV 1330

Query: 2832 DYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSES 3011
            DYDD  E+E ++G  S   E  ++  +  D + +G +V+ +  D E++  D    L   S
Sbjct: 1331 DYDDGPEEETHDGEKSEDVEVSEDGKD--DEDDNGVEVNGDDSDIEVNDSDKNVTLEETS 1388

Query: 3012 QSPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQ 3191
            +S                    + + K  DR + V                  +PHILL 
Sbjct: 1389 KSKKRKF---------------EPASKKYDRRVYVKAGGMRFEIHFKFIG---EPHILLA 1430

Query: 3192 QVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCHS-------NVSAEEKKRNSALLTAGV 3350
            Q+A   A+KV I++ G +  C+ I C    V+ +        ++ +  K++  AL T+G+
Sbjct: 1431 QIAQRTAEKVCIQNFGKVGQCKAITCKESGVIYYGEDDSKRDDIPSSVKEKIPALQTSGI 1490

Query: 3351 DFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNSYGITVDIRHLTL 3530
             FK FWEM+++L V  +YSN++H++LK YGVEAA+E IIREV +VF SYGI+V+IRHL L
Sbjct: 1491 HFKTFWEMEDDLKVRYVYSNDVHAILKAYGVEAAKEVIIREVQNVFKSYGISVNIRHLML 1550

Query: 3531 IADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLTDDLESPSARVCL 3710
            IADFMTHSG Y P++RS GIA+S SPF KI++ETAS FIVEAA +G  D LE+PS+R+CL
Sbjct: 1551 IADFMTHSGSYRPLTRS-GIADSTSPFVKISYETASNFIVEAARHGQVDTLETPSSRICL 1609

Query: 3711 GLPVKVGTGCFDVMQKVDI 3767
            GLPVK+GTGC D++QK++I
Sbjct: 1610 GLPVKMGTGCIDLIQKLEI 1628


>ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana]
            gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I
            190K chain-like protein [Arabidopsis thaliana]
            gi|332646163|gb|AEE79684.1| nuclear RNA polymerase A1
            [Arabidopsis thaliana]
          Length = 1670

 Score = 1316 bits (3407), Expect = 0.0
 Identities = 722/1284 (56%), Positives = 885/1284 (68%), Gaps = 29/1284 (2%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            LLEKK+G+FRQKMMGKRVN ACRSVISPDPY+AVN+IGIPP FAL+LTYPERVTPWN+ K
Sbjct: 429  LLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEK 488

Query: 183  LRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDIDF 362
            LR+AIING +IHPGATHY+DKSS   L             KL SSRG  T+ GK+ DI+F
Sbjct: 489  LREAIINGPDIHPGATHYSDKSSTMKLPSTEKARRAIAR-KLLSSRGATTELGKTCDINF 547

Query: 363  EGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 542
            EGK V RH++DGDIVLVNRQPTLHKPS+MAH VRVLKGEKTLR+HYANCSTYNADFDGDE
Sbjct: 548  EGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDE 607

Query: 543  MNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRDEY 722
            MNVHFPQDEISRAEAYNIVNANNQY  PS GEP+RALIQDHI+S+VLLTK+DTFL +D +
Sbjct: 608  MNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHF 667

Query: 723  SQLLYXXXXXXXXXXXXXCKPGQKVCLVSED-EMQTLQPAILKPEPLWTGKQVITAVLNH 899
            +QLL+              + G+KV + + D E+ T+ PAILKP PLWTGKQVITAVLN 
Sbjct: 668  NQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQ 727

Query: 900  ITKGHPPFTVEKEGKIPREYFGSNTGE-----DDLSVERKTSXXXXXXXXXXXXXILYVS 1064
            ITKGHPPFTVEK  K+P ++F   + E      DL+ +++                L++ 
Sbjct: 728  ITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLTKKKEIDESWKQNLNEDK---LHIR 784

Query: 1065 KNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLL 1244
            KN+ V GVIDKAQF  YGLVHTV ELYG   AG LLS FSRLFTVFLQ HGFTCGVDDL+
Sbjct: 785  KNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLI 844

Query: 1245 ILKYRDIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYD-EIDPKELPN 1421
            ILK  D ER ++L++C++ G                   V  K  GI  D +IDP+++ +
Sbjct: 845  ILKDMDEERTKQLQECENVG-----------------ERVLRKTFGIDVDVQIDPQDMRS 887

Query: 1422 EIEYGICRYGEVGTTSLDNEMRKHLSNASTE-VNKDLFVKGLLKPFPKNCFSLMTTTGAK 1598
             IE  +   GE    SLD  +  +L+  S++ V  DL   GLLK   +NC SLMT +GAK
Sbjct: 888  RIERILYEDGESALASLDRSIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGAK 947

Query: 1599 GGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQE 1778
            G  VNFQQ+SS LGQQDLEGKRVPRMVSGKTLP F PWDWSPRAGGFISD FL+GL PQE
Sbjct: 948  GSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQE 1007

Query: 1779 YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDG 1958
            YYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKV YD TVRDADGSIIQF YGEDG
Sbjct: 1008 YYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDG 1067

Query: 1959 VDVHQTSFISKFKALEENHQILREKFLHH-LDKSNSYIEHLPPKLEKKAREFIKGVPEKK 2135
            VDVH++SFI KFK L  N  ++ +K     L  ++SYI  LP  L+K A +F++ +P  +
Sbjct: 1068 VDVHRSSFIEKFKELTINQDMVLQKCSEDMLSGASSYISDLPISLKKGAEKFVEAMPMNE 1127

Query: 2136 ----KHIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMN 2303
                K +  E+ +KL+  K+F+SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMN
Sbjct: 1128 RIASKFVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMN 1187

Query: 2304 VTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVG 2483
            VTLGIPRLQEILMTA+ NIKTPIMTCPLLK K T E A  +   L+K+TV DI +++ + 
Sbjct: 1188 VTLGIPRLQEILMTAAANIKTPIMTCPLLKGK-TKEDANDITDRLRKITVADIIKSMELS 1246

Query: 2484 -LRHHLYSR----VYTLAMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINA 2639
             + + +Y      ++ L +NLY+P     ++ I+ +D++ET+   F+R+LEDAI   +  
Sbjct: 1247 VVPYTVYENEVCSIHKLKINLYKPEHYPKHTDITEEDWEETMRAVFLRKLEDAIETHMKM 1306

Query: 2640 IKRMHGIQAFDQPSQSKASKETDEEVSGMRGEENDDDG-DVSXXXXXXXXXXXXQKRKRQ 2816
            + R+ GI   +  +   A  ETD + S + G++N+DDG D              QK+K+Q
Sbjct: 1307 LHRIRGIH--NDVTGPIAGNETDNDDS-VSGKQNEDDGDDDGEGTEVDDLGSDAQKQKKQ 1363

Query: 2817 STDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASN 2996
             TDE+DY++ SEDE NE    +G E         D EMD +     ++D E+   +D   
Sbjct: 1364 ETDEMDYEENSEDETNEPSSISGVE---------DPEMDSE-----NEDTEV-SKEDTPE 1408

Query: 2997 LPSESQSPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDP 3176
               ES  P                   +  R  +DR I V                 +DP
Sbjct: 1409 PQEESMEPQKEVKGVKNVKEQSKKKRRKFVRAKSDRHIFV--KGEGEKFEVHFKFATDDP 1466

Query: 3177 HILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCHSN-------VSAEEKKRNSAL 3335
            HILL Q+A   A+KVYI+++G IE C   +C + QV+ H +       +S +EKK + AL
Sbjct: 1467 HILLAQIAQQTAQKVYIQNSGKIERCTVANCGDPQVIYHGDNPKERREISNDEKKASPAL 1526

Query: 3336 LTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNSYGITVDI 3515
              +GVDF A WE Q+ LDV  +YSN+IH ML  +GVEAARE+IIRE++HVF SYGI+V I
Sbjct: 1527 HASGVDFPALWEFQDKLDVRYLYSNSIHDMLNIFGVEAARETIIREINHVFKSYGISVSI 1586

Query: 3516 RHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLTDDLESPS 3695
            RHL LIAD+MT SGGY PMSR GGIAES SPF ++TFETA+KFIV+AA YG  D LE+PS
Sbjct: 1587 RHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEKDTLETPS 1646

Query: 3696 ARVCLGLPVKVGTGCFDVMQKVDI 3767
            AR+CLGLP   GTGCFD+MQ+V++
Sbjct: 1647 ARICLGLPALSGTGCFDLMQRVEL 1670


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score = 1314 bits (3401), Expect = 0.0
 Identities = 717/1291 (55%), Positives = 880/1291 (68%), Gaps = 36/1291 (2%)
 Frame = +3

Query: 3    LLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGK 182
            +LEKK+GIFRQKMMGKRVNFACRSVISPDPYL+VNEIGIPPYFA RLTYPER+TPWN  K
Sbjct: 432  MLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFASRLTYPERLTPWNAVK 491

Query: 183  LRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDIDF 362
            +RDA+ING E HPGA  +AD+ +   L             KLPSSRG VTQ G++ + +F
Sbjct: 492  MRDAVINGPENHPGAISFADRIATVKLPSNKKMRVAISR-KLPSSRGAVTQSGRNNEYEF 550

Query: 363  EGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 542
            EGK+V RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE
Sbjct: 551  EGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 610

Query: 543  MNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKDTFLSRDEY 722
            MNVHFPQDEISRAEAYNIVNAN QY+VP++G+ +R LIQDHI+ AV+LT K+TFLS  E+
Sbjct: 611  MNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVILTMKNTFLSLHEF 670

Query: 723  SQLLYXXXXXXXXXXXXXCKPGQKVCLVS-EDEMQTLQPAILKPEPLWTGKQVITAVLNH 899
            +QLLY                  KV +V  E  +QT+ PA+ KP+PLWTGKQVITA+LNH
Sbjct: 671  NQLLYGSGVFAAGPAPTSGNHSNKVSIVDFEGVVQTVLPAVWKPKPLWTGKQVITALLNH 730

Query: 900  ITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLV 1079
            +T G PP TV+ +GKIP  YF S +   +     +                  + KN+LV
Sbjct: 731  LTNGCPPCTVKNKGKIPYAYFLSESRLVEYQSREEQEDRTAENE-------FLIWKNELV 783

Query: 1080 RGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYR 1259
            RGVIDKAQFG +GLVHT+QELYG   AGILLSA SRLFT+FLQ+HGFTCG+DDL+IL + 
Sbjct: 784  RGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRLFTIFLQLHGFTCGIDDLVILPHY 843

Query: 1260 DIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDEIDPKELPNEIEYGI 1439
            DI RK+ELE   D G                    +  F+  K  EI P EL  EIE  I
Sbjct: 844  DIRRKEELEG-DDVG-----------------EEAHCDFVKFKRGEIGPLELQLEIEKAI 885

Query: 1440 CRYGEVGTTSLDNEMRKHLSNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQ 1619
                EV T +LD +M+  L+N  ++ NK+L +KGLLKPFP+NC +LMT TGAKG  VNFQ
Sbjct: 886  SSNKEVATAALDMKMKNKLANKGSQFNKELLLKGLLKPFPRNCIALMTITGAKGSTVNFQ 945

Query: 1620 QVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMA 1799
            Q+SS LGQQ+LEGKRVPRMVSGKTLP F  WD + RAGG++SD FL+GL PQEYYFHCMA
Sbjct: 946  QISSYLGQQELEGKRVPRMVSGKTLPCFPAWDCASRAGGYVSDRFLSGLRPQEYYFHCMA 1005

Query: 1800 GREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTS 1979
            GREGLVDTAVKTSRSGYLQRCLIKNLE LKVCYD+TVRDADGSIIQF YGEDGVDVH+TS
Sbjct: 1006 GREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHRTS 1065

Query: 1980 FISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIK----------GVPE 2129
            F+  FKAL+ N + + +K L H  K NSYIE LP  L +K + F +          G+  
Sbjct: 1066 FLKNFKALKNNQETICQK-LRHGCKLNSYIEKLPDGLGEKVKHFWESKTKKLEKKLGMLV 1124

Query: 2130 KKKHI------DDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGR 2291
            KK+ +      ++ DF++L+  KYFSSLA  GEPVGVLA QSVGEPSTQMTLNTFHLAGR
Sbjct: 1125 KKEEMVKQLKEEEADFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTFHLAGR 1184

Query: 2292 GEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITEN 2471
            GEMNVTLGIPRLQEILMTAS  IKTPIMTCP L  KS ++ A+ L   +KK+TV D+ E+
Sbjct: 1185 GEMNVTLGIPRLQEILMTASEAIKTPIMTCPFLGWKSKND-AQSLLAKVKKITVADMIES 1243

Query: 2472 IYV-----GLRHHLYSRVYTLAMNLYRPASNSGISLKDYKETLTIQFVRELEDAIHNQIN 2636
            + V      + +H  S++Y L + L +   +  +S +D + TL   F+RELEDAI + + 
Sbjct: 1244 MEVKLLPLSIYNHQVSQLYKLTVKLKK---HDFVSSEDCEYTLKFVFLRELEDAIESHLA 1300

Query: 2637 AIKRMHGIQAFDQPSQSKASKETDEEVSGMRGEEND-DDGDVSXXXXXXXXXXXXQKRKR 2813
             + +++GIQ F   S+S  S ET+E  S  R EE   DD D              QKRK+
Sbjct: 1301 LLSKINGIQNFKTSSESVDSDETEENASSTRREEEMLDDDDDDEDERTEDLSSDAQKRKQ 1360

Query: 2814 QSTDEVDYDDASEDEPNEGVLSTGFEQEK-------ENGNCLDTEMDGDDVSRNSQDAEM 2972
            Q+TDE+DYDD  ++   E   +   E EK       +NG   D E +GD  +        
Sbjct: 1361 QTTDEMDYDDDEDEAEAEAEATAEIEDEKSEQTDEIDNG---DEEENGDRGNEEHTSKLQ 1417

Query: 2973 DGDDDASNLPSESQSPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXX 3152
              ++D SN  +                        + S+KD+DR + V            
Sbjct: 1418 STEEDISNTKTSKSK--------TKTTVKQKKKKERRSKKDSDRCVFVDVEGLHFEVHFR 1469

Query: 3153 XXXXDEDPHILLQQVALNVAKKVYIKSAGDIEHCQ--KIDCSNGQVLCHSNVSAEEKKRN 3326
                  +PHILL QVA   AKKVY+K++G I+ C+  K + +   V+   N + ++++ +
Sbjct: 1470 FV---NEPHILLAQVAQKTAKKVYVKNSGKIDQCRMVKYEVTENTVMWDENQTKQQRQDS 1526

Query: 3327 S----ALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNS 3494
                 AL  AGVDF  FWEMQ++LDV  IY+NNI +ML TYGVEAAR SI+REV  VF  
Sbjct: 1527 DSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARASILREVKTVFGI 1586

Query: 3495 YGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLT 3674
            YG+ +D RHL+LIADFMTH+GGY PMSR G I+ES+SPF K++FETASKFIVEAA +GLT
Sbjct: 1587 YGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAAAHGLT 1646

Query: 3675 DDLESPSARVCLGLPVKVGTGCFDVMQKVDI 3767
            D+LE+PS+R+CLGLPVK+GTGCFD+MQ++DI
Sbjct: 1647 DNLETPSSRICLGLPVKMGTGCFDIMQELDI 1677