BLASTX nr result
ID: Paeonia23_contig00007991
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia23_contig00007991
(1144 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subc... 190 1e-45
gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subc... 189 2e-45
emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera] 185 4e-44
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 174 8e-41
gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryz... 166 1e-38
gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subc... 160 1e-36
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 154 7e-35
emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera] 154 9e-35
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 152 3e-34
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 152 3e-34
gb|AAK29467.1| polyprotein-like [Solanum chilense] 152 3e-34
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 151 6e-34
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 150 1e-33
emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera] 148 4e-33
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 147 6e-33
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 147 8e-33
emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera] 147 8e-33
gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vul... 146 2e-32
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu... 139 2e-30
emb|CAN61435.1| hypothetical protein VITISV_033767 [Vitis vinifera] 128 5e-27
>gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 425
Score = 190 bits (482), Expect = 1e-45
Identities = 125/378 (33%), Positives = 183/378 (48%), Gaps = 4/378 (1%)
Frame = +3
Query: 6 FDIVKFDGKNNFTNWQTEVKDILISLKQFKALKGKPSXXXXXXXXXXXXXXXXXACSTIR 185
F++VKFDG NF WQ +KD+L KAL+ A +TIR
Sbjct: 9 FEVVKFDGTGNFILWQMRLKDLLAQQGISKALE---ETMPEKMDAGKWEEMKAQAAATIR 65
Query: 186 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 365
L L+ +M+ E + KE+WDKL +YM K L + L L+Q+LY L H++
Sbjct: 66 LSLSDSVMYPVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDV 125
Query: 366 FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 545
F ++ + + +KLD+ + A+ILLC LP YE + L+ GKD T+K +E +++L A+
Sbjct: 126 FNQLVVDLSKLDVKLDDEDMAIILLCSLPPSYEHVVTTLMHGKD--TVKTEEKISSLLAR 183
Query: 546 AIRDV---ETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXXGEEECHWCHQLGH 716
+R E +S+A+SL V+ C+ CH+ GH
Sbjct: 184 DLRRSNKNEAMEASQAESLLVKAKHDHEAGVSKSKDKGA-----------RCYKCHEFGH 232
Query: 717 YXXXXXXXXXXXXXXXXXXXXXASVAQVGDEVLEYLLGGDDSEVLTAETSEDVMYE-WIF 893
AS+A GD+ D S T S + E W+
Sbjct: 233 -------IRRNCPLLKKRKGGIASLAARGDD-------SDSSSHETLTVSNEKSGEAWML 278
Query: 894 DTGASYHMCPARENFSTYREVDGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLTEVRHV 1073
D+ +SYH+ RE FS+Y+ D G V +GD S + VGVG +KF+M+D E L++VRH+
Sbjct: 279 DSASSYHVTSKREWFSSYKSGDFGVVYLGDDTSYRVVGVGDVKFEMYDGNEVLLSDVRHM 338
Query: 1074 PGLRKGLISLGVLEAAGY 1127
PGLRK LISLG L +
Sbjct: 339 PGLRKSLISLGSLHETSW 356
>gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 424
Score = 189 bits (479), Expect = 2e-45
Identities = 126/377 (33%), Positives = 185/377 (49%), Gaps = 3/377 (0%)
Frame = +3
Query: 6 FDIVKFDGKNNFTNWQTEVKDILISLKQFKALKGKPSXXXXXXXXXXXXXXXXXACSTIR 185
F++VKFDG NF WQ +KD+L KAL+ A +TIR
Sbjct: 9 FEVVKFDGTGNFVLWQMRLKDLLAQQGISKALE---ETMPEKMDAGKWEEMKAQAAATIR 65
Query: 186 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 365
L L+ +M+ E ++KE+W KL +YM K L + L L+Q+LY L H++
Sbjct: 66 LSLSDSVMYQVMDEKTSKEIWVKLTSLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDV 125
Query: 366 FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 545
F ++ + + +KLD+ +KA+ILLC LP YE + L GKD T+K E++++L A+
Sbjct: 126 FNQLVVDLSKLDVKLDDEDKAIILLCSLPPSYEHVVTILTHGKD--TIK-TEIISSLLAR 182
Query: 546 AIRDV---ETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXXGEEECHWCHQLGH 716
+R E +S+A+SL V+ C+ CH+ GH
Sbjct: 183 DLRRSKKNEAMEASQAESLLVKAKHDHEAGVSKSKEKGA-----------RCYKCHEFGH 231
Query: 717 YXXXXXXXXXXXXXXXXXXXXXASVAQVGDEVLEYLLGGDDSEVLTAETSEDVMYEWIFD 896
AS+A GD+ E+LT ++E W+ D
Sbjct: 232 IRRNCPLLKKRKDGI-------ASLAARGDDS-----DSSSHEILTV-SNEKSGEAWMLD 278
Query: 897 TGASYHMCPARENFSTYREVDGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLTEVRHVP 1076
+ +SYH+ RE FS+Y+ D G V +GD S + VGVG +KF+M+D E L++VRHVP
Sbjct: 279 SASSYHVTSKREWFSSYKSGDFGVVYLGDDTSYRVVGVGDVKFKMYDGNEVLLSDVRHVP 338
Query: 1077 GLRKGLISLGVLEAAGY 1127
GLRK LISLG L G+
Sbjct: 339 GLRKSLISLGSLHEIGW 355
>emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]
Length = 950
Score = 185 bits (469), Expect = 4e-44
Identities = 125/380 (32%), Positives = 190/380 (50%), Gaps = 2/380 (0%)
Frame = +3
Query: 6 FDIVKFDGKNNFTNWQTEVKDILISLKQFKALKGKPSXXXXXXXXXXXXXXXXXACSTIR 185
F++ KF+G N+FT W+ ++K +L+ K +A++G+ + A S I
Sbjct: 6 FEVEKFNGSNDFTLWKLKMKALLVQQKCAQAIEGEETLPVGLTAVEKEEVVSR-AHSAIL 64
Query: 186 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 365
L L E++ A ET+A LW K + Y KK L L +++L+T G + DH+N
Sbjct: 65 LSLADEVLREVADETTAVGLWRKFESKYQKKSLTNRLYQKRQLHTLKMSEGMQVRDHLNN 124
Query: 366 FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 545
F +I + +G+K++E ++AMILLC LP YE +D ++ G++ ++ ++V ALQ+K
Sbjct: 125 FNRIILDLNGVGVKVEEEDQAMILLCSLPSSYENFVDTMMYGRB--SISXNDVKDALQSK 182
Query: 546 AIRDVETTS--SSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXXGEEECHWCHQLGHY 719
++ + + S S L V RGR C + GH+
Sbjct: 183 ELQKLVSGSEEGSVETGLTVSRGRS-----MERNGGGRSKSXSKSKAAMRCFHXKEKGHF 237
Query: 720 XXXXXXXXXXXXXXXXXXXXXASVAQVGDEVLEYLLGGDDSEVLTAETSEDVMYEWIFDT 899
VAQ E + G+ +VLT TS WI DT
Sbjct: 238 RKNCPQRQKGIGXGSNGNAQVV-VAQKDSEKQDSSDEGEGGDVLTVSTSSSA-ESWILDT 295
Query: 900 GASYHMCPARENFSTYREVDGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLTEVRHVPG 1079
GASYHM +R+ F+T++E + G V +GD G L G GS++ +M+D RTL +VPG
Sbjct: 296 GASYHMAYSRDLFTTFKEWN-GSVKLGDDGELGVKGSGSVQIKMYDGLVRTL-NAWYVPG 353
Query: 1080 LRKGLISLGVLEAAGYGFSG 1139
LRK LIS+G L+ GY FSG
Sbjct: 354 LRKNLISVGTLDKNGYTFSG 373
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 174 bits (440), Expect = 8e-41
Identities = 113/381 (29%), Positives = 182/381 (47%), Gaps = 4/381 (1%)
Frame = +3
Query: 12 IVKFDGKNNFTNWQTEVKDILISLKQFKALKGKPSXXXXXXXXXXXXXXXXXACSTIRLC 191
I KF G+N+F+ WQ +++ +L + L S A STI LC
Sbjct: 8 IDKFTGRNSFSLWQIKMRALLKQQGFWAPL----SKDKNAVVTPEMAILEEKAHSTIMLC 63
Query: 192 LTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINAFT 371
L +++ + E +A LW KL+ +YM K L L L+Q+L+ G L +H+
Sbjct: 64 LADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHLEQLN 123
Query: 372 KITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAKAI 551
+ + +I +K+++ + A+ILL LP +E + + + GKD T+ +EV +AL ++ +
Sbjct: 124 TLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKD--TVSLEEVRSALHSREL 181
Query: 552 RDVETTSSSEAQ--SLFVE--RGRQTXXXXXXXXXXXXXXXXXXXXGEEECHWCHQLGHY 719
R +S++ Q LF +GR+ ++ C++C + GH+
Sbjct: 182 RHKANGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKP-------DDVCNYCKEKGHW 234
Query: 720 XXXXXXXXXXXXXXXXXXXXXASVAQVGDEVLEYLLGGDDSEVLTAETSEDVMYEWIFDT 899
+ V V E ++ L A+ W+ D+
Sbjct: 235 KFDCPKKKKQ-----------SEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVWVLDS 283
Query: 900 GASYHMCPARENFSTYREVDGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLTEVRHVPG 1079
GASYH+CP RE F+TY +VDGG + M + K VG GSIK + D + TL EVRHVP
Sbjct: 284 GASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPL 343
Query: 1080 LRKGLISLGVLEAAGYGFSGK 1142
+ K LISL +L++ G+ +SGK
Sbjct: 344 MTKNLISLSLLDSKGFSWSGK 364
>gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryza sativa Japonica
Group] gi|108706491|gb|ABF94286.1| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 556
Score = 166 bits (421), Expect = 1e-38
Identities = 107/323 (33%), Positives = 162/323 (50%), Gaps = 3/323 (0%)
Frame = +3
Query: 168 ACSTIRLCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSL 347
A + IRL L+ +M+ E + KE+WDKL +YM K L + L L+Q+LY L
Sbjct: 191 ATAIIRLSLSDFVMYQVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDL 250
Query: 348 SDHINAFTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVV 527
H++ F ++ + + +KLD+ +KA+ILLC LP +E + L GKD T+K +E++
Sbjct: 251 RKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPPSFEHVVTTLTHGKD--TVKTEEII 308
Query: 528 TALQAKAIRDV---ETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXXGEEECHW 698
++L A+ +R E +S+A+SL V+ C+
Sbjct: 309 SSLLARDLRRSKKNEAMEASQAESLLVKAKHDHEAGVSKSKEKGA-----------RCYK 357
Query: 699 CHQLGHYXXXXXXXXXXXXXXXXXXXXXASVAQVGDEVLEYLLGGDDSEVLTAETSEDVM 878
CH+ GH AS+A GD E+LT ++E
Sbjct: 358 CHEFGHIRRNCPLLKKRKGGI-------ASLAARGDNS-----DSSSHEILTV-SNEKSG 404
Query: 879 YEWIFDTGASYHMCPARENFSTYREVDGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLT 1058
W+ D+ +SYH+ E FS+Y+ D G V +G+ S + +GVG IKF+M+D E L+
Sbjct: 405 EAWMLDSASSYHVTSKWEWFSSYKSGDFGVVYLGNDTSYRVIGVGDIKFKMYDGNEVLLS 464
Query: 1059 EVRHVPGLRKGLISLGVLEAAGY 1127
+VRHVPGLRK LISLG L G+
Sbjct: 465 DVRHVPGLRKSLISLGSLHETGW 487
>gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 415
Score = 160 bits (404), Expect = 1e-36
Identities = 113/378 (29%), Positives = 177/378 (46%), Gaps = 4/378 (1%)
Frame = +3
Query: 6 FDIVKFDGKNNFTNWQTEVKDILISLKQFKALKGKPSXXXXXXXXXXXXXXXXXACSTIR 185
F++VKFDG NF WQ +KD+L KAL+ A +TIR
Sbjct: 9 FEVVKFDGTGNFVLWQMRLKDLLAQQGISKALQ---ETMPEKIDADKWNEMKAQAAATIR 65
Query: 186 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 365
L L+ +M+ E S KE+WDKL ++M K L + L L+Q+LY L H++
Sbjct: 66 LSLSDSVMYQVMDEKSPKEIWDKLASLHMSKSLTSKLYLKQQLYGLQVQEESDLRKHVDV 125
Query: 366 FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 545
F ++ + + +KLD+ +KA+ILLC LP YE + L GKD T+K +E++++L A+
Sbjct: 126 FNQLVVDLSKLDVKLDDEDKAIILLCSLPLSYEHVVTTLTHGKD--TVKTEEIISSLLAR 183
Query: 546 AIRDV---ETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXXGEEECHWCHQLGH 716
+R E T +S+ +SL V+ C+ CH+ GH
Sbjct: 184 DLRRSKKNEATKASQGKSLLVKDKHDHEAGVSKSKEKGA-----------RCYKCHEFGH 232
Query: 717 YXXXXXXXXXXXXXXXXXXXXXASVAQVGDEVLEYLLGGDDSEVLTAETSEDVMYE-WIF 893
AS+A GD+ E+LT S+++ E W+
Sbjct: 233 IRRNCPLLKKRKGGI-------ASLAARGDDS-----DSGSHEILTV--SDEMSGEAWML 278
Query: 894 DTGASYHMCPARENFSTYREVDGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLTEVRHV 1073
D+ +SYH+ RE FS+Y+ D G V +GD S + VGVG + F++ ++
Sbjct: 279 DSASSYHVTSKREWFSSYKSGDFGVVYLGDGTSYRVVGVGDVNFKICETR---------- 328
Query: 1074 PGLRKGLISLGVLEAAGY 1127
G+++ +SLG L G+
Sbjct: 329 AGIKEEFVSLGSLHETGW 346
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 154 bits (389), Expect = 7e-35
Identities = 108/386 (27%), Positives = 173/386 (44%), Gaps = 10/386 (2%)
Frame = +3
Query: 6 FDIVKFDGKNNFTNWQTEVKDILISLKQFKALKGKPSXXXXXXXXXXXXXXXXXACSTIR 185
F+I KF+G +NF+ W+ ++K IL A+ G+P+ A + +
Sbjct: 5 FEIPKFNG-SNFSLWKLKIKAILRKDNCLPAIDGRPADITDDKRKEMDDN----AVANLH 59
Query: 186 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 365
L + ++ + A + +AK++WD L +Y K L + L+++LYTF S+ DHIN
Sbjct: 60 LAVADSVLSSIAEKKTAKKIWDTLIQLYEVKSLHNRIFLKRRLYTFRMSESTSMPDHINN 119
Query: 366 FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 545
+ + + E E+A +LL LP Y+ + N+ L +++V A+ +
Sbjct: 120 LNTMFAQLSASDFTIGENERAEVLLQSLPDSYDQLVINITNNNIVDRLSFNDVAGAILEE 179
Query: 546 AIR----DVETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXXGEEECHWCHQLG 713
R + SS + ++L V RGR T +C+ C + G
Sbjct: 180 ESRRKNKEDRQDSSKQMEALTVTRGRSTERGPSGSQNHGRSTSRRKT--NLKCYNCGKRG 237
Query: 714 HYXXXXXXXXXXXXXXXXXXXXXASVAQVGDEVLEYLLGGDDSEVLTAETSEDVMYE--- 884
H VA DD EVL +E + +
Sbjct: 238 HLKKDCWSNKKSGEKSSEASTSQGCVAST----------SDDGEVLYSEAAVSTKGKNRL 287
Query: 885 ---WIFDTGASYHMCPARENFSTYREVDGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTL 1055
WI D+GA++HM P R+ F TY V G V MG+ +L+ VG+G++K +M+D RTL
Sbjct: 288 TDVWIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTL 347
Query: 1056 TEVRHVPGLRKGLISLGVLEAAGYGF 1133
EVRHV L K L+S+G L+ GY +
Sbjct: 348 QEVRHVKELAKNLLSVGQLDDLGYKY 373
>emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera]
Length = 894
Score = 154 bits (388), Expect = 9e-35
Identities = 108/379 (28%), Positives = 174/379 (45%)
Frame = +3
Query: 6 FDIVKFDGKNNFTNWQTEVKDILISLKQFKALKGKPSXXXXXXXXXXXXXXXXXACSTIR 185
FD+ KF GKN+F W+ +++ +L+ AL G+ + A I
Sbjct: 6 FDVEKFTGKNDFGLWRLKMRALLVQQGLQDALLGEKNLPXTMQEKHKIELLEK-AHGAII 64
Query: 186 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 365
L L + A SA +L KL+ +YM K L L KLYTF S+ +H++
Sbjct: 65 LSLGDTXLREVAKAKSAAKLLLKLESLYMTKSLANRLHKXIKLYTFKMTPSMSIEEHLDH 124
Query: 366 FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 545
F KI +++I I + +KA++LL L Y + ++ G+D L +DEV + L A+
Sbjct: 125 FNKIILDLKNIDIAVSNEDKAILLLTSLDASYTNMKEAIMYGRD--ILTFDEVQSILHAR 182
Query: 546 AIRDVETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXXGEEECHWCHQLGHYXX 725
+ E + + L + RG+ + +C CH+ GH+
Sbjct: 183 ELHKQEESKEELGEGLNI-RGKSKKREKKKGNNSKSRSKSKTK--KFKCFICHKEGHFKK 239
Query: 726 XXXXXXXXXXXXXXXXXXXASVAQVGDEVLEYLLGGDDSEVLTAETSEDVMYEWIFDTGA 905
GD + +L G D+ + D EWI D+G
Sbjct: 240 DCPDMRQNTXK---------KTMNEGDATM--ILDGYDNAGVLNVAEVDSGKEWILDSGC 288
Query: 906 SYHMCPARENFSTYREVDGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLTEVRHVPGLR 1085
S+HMCP + F ++E +GG VL+G+ K +G G++K + +D ER L ++R++P L+
Sbjct: 289 SFHMCPIKAWFEDFKEANGGHVLLGNNKHCKILGTGTVKIKHYDGIERVLEDIRYIPELK 348
Query: 1086 KGLISLGVLEAAGYGFSGK 1142
LISLG+L+ GY F +
Sbjct: 349 MNLISLGMLDKLGYTFKSE 367
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 152 bits (384), Expect = 3e-34
Identities = 106/383 (27%), Positives = 172/383 (44%), Gaps = 10/383 (2%)
Frame = +3
Query: 6 FDIVKFDGKNNFTNWQTEVKDILISLKQFKALKGKPSXXXXXXXXXXXXXXXXXACSTIR 185
F+I KF+G+N F+ W+ +++ IL A+ G+P+ A + +
Sbjct: 5 FEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGRPADITDEKWKEMDDN----AVANLH 59
Query: 186 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 365
L + ++ + A + +AKE+WD L +Y K L + L+++LYT S++DHIN
Sbjct: 60 LAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINT 119
Query: 366 FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 545
+ + K+ E E+A +LL LP Y+ I N+ TL +D+V A+ +
Sbjct: 120 LNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNITDTLHFDDVAGAILEE 179
Query: 546 AIR----DVETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXXGEEECHWCHQLG 713
R + + SS +A++L + RGR T +C+ C G
Sbjct: 180 ESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKK--NIKCYGCGMKG 237
Query: 714 HYXXXXXXXXXXXXXXXXXXXXXASVAQVGDEVLEYLLGGDDSEVLTAETSEDVMYE--- 884
H VA D D E+L +E + E
Sbjct: 238 HVKKECWNIKKNGEKNSEASTSQGCVASTSD----------DGEILYSEAATSSKGERRL 287
Query: 885 ---WIFDTGASYHMCPARENFSTYREVDGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTL 1055
WI D+GA++HM P R+ F +Y + G V MG+ +L+ GVG+I+ +M D R +
Sbjct: 288 NDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKI 347
Query: 1056 TEVRHVPGLRKGLISLGVLEAAG 1124
VRHV GL+K L+S+G L+ G
Sbjct: 348 QGVRHVKGLKKNLLSVGQLDDLG 370
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 152 bits (384), Expect = 3e-34
Identities = 106/383 (27%), Positives = 172/383 (44%), Gaps = 10/383 (2%)
Frame = +3
Query: 6 FDIVKFDGKNNFTNWQTEVKDILISLKQFKALKGKPSXXXXXXXXXXXXXXXXXACSTIR 185
F+I KF+G+N F+ W+ +++ IL A+ G+P+ A + +
Sbjct: 5 FEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGRPADITDEKWKEMDDN----AVANLH 59
Query: 186 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 365
L + ++ + A + +AKE+WD L +Y K L + L+++LYT S++DHIN
Sbjct: 60 LAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINT 119
Query: 366 FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 545
+ + K+ E E+A +LL LP Y+ I N+ TL +D+V A+ +
Sbjct: 120 LNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEE 179
Query: 546 AIR----DVETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXXGEEECHWCHQLG 713
R + + SS +A++L + RGR T +C+ C G
Sbjct: 180 ESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKK--NIKCYGCGMKG 237
Query: 714 HYXXXXXXXXXXXXXXXXXXXXXASVAQVGDEVLEYLLGGDDSEVLTAETSEDVMYE--- 884
H VA D D E+L +E + E
Sbjct: 238 HVKKECWNIKKNGEKNSEASTSQGCVASTSD----------DGEILYSEAATSSKGERRL 287
Query: 885 ---WIFDTGASYHMCPARENFSTYREVDGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTL 1055
WI D+GA++HM P R+ F +Y + G V MG+ +L+ GVG+I+ +M D R +
Sbjct: 288 NDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKI 347
Query: 1056 TEVRHVPGLRKGLISLGVLEAAG 1124
VRHV GL+K L+S+G L+ G
Sbjct: 348 QGVRHVKGLKKNLLSVGQLDDLG 370
>gb|AAK29467.1| polyprotein-like [Solanum chilense]
Length = 1328
Score = 152 bits (384), Expect = 3e-34
Identities = 116/384 (30%), Positives = 166/384 (43%), Gaps = 10/384 (2%)
Frame = +3
Query: 6 FDIVKFDG-KNNFTNWQTEVKDILISLKQFKALKGKPSXXXXXXXXXXXXXXXXXACSTI 182
+++ KF+G K F+ WQ +KD+LI KAL GK S A S I
Sbjct: 6 YEVAKFNGDKPVFSMWQRRMKDLLIQQGLHKALGGK-SKKPESMKLEDWEELDEKAASAI 64
Query: 183 RLCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHIN 362
RL LT ++++N E SA +W KL+ +YM K L L L+++LYT G + H+N
Sbjct: 65 RLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSHLN 124
Query: 363 AFTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQA 542
+ + ++G+K++E +K ++LL LP Y+ +L GKD LK +V +AL
Sbjct: 125 VLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTLSTTILHGKDSIQLK--DVTSALLL 182
Query: 543 KAIRDVETTSSSEAQSLFVE-RGR--QTXXXXXXXXXXXXXXXXXXXXGEEECHWCHQLG 713
+ + Q E RGR Q C+ C Q G
Sbjct: 183 N--EKMRKKPENHGQVFITESRGRSYQRSSSNYGRSGARGKSKVRSKSKARNCYNCDQPG 240
Query: 714 HYXXXXXXXXXXXXXXXXXXXXXASVAQVGDEVLEYLLGGDDSEVLTAETSEDVMY---- 881
H+ S Q D+ ++ +D VL E+ M+
Sbjct: 241 HF---------KRDCPNPKRGKGESSGQKNDDNTAAMVQNNDDVVLLINEEEECMHLAGT 291
Query: 882 --EWIFDTGASYHMCPARENFSTYREVDGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTL 1055
EW+ DT ASYH P R+ F Y D G V MG+ K G+G I F+ L
Sbjct: 292 ESEWVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKTNVGCTLVL 351
Query: 1056 TEVRHVPGLRKGLISLGVLEAAGY 1127
+VRHVP LR LIS L+ GY
Sbjct: 352 KDVRHVPDLRMNLISGIALDQDGY 375
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 151 bits (381), Expect = 6e-34
Identities = 110/386 (28%), Positives = 180/386 (46%), Gaps = 8/386 (2%)
Frame = +3
Query: 9 DIVKFDGKNNFTNWQTEVKDILISLKQFKALKGKP-SXXXXXXXXXXXXXXXXXACSTIR 185
+I KF +F+ W+ ++K +L+ AL + A ST+
Sbjct: 7 EIEKFTIGGDFSLWKLKMKALLVHQGLESALDEEDLEASTGSGIDDKRRQIQNRAHSTLI 66
Query: 186 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 365
L L I+ + E +A +W+K++ + MKK L L L+++LYTFS G ++ DHI+
Sbjct: 67 LSLGDSILREISEEKTALGIWNKVETLCMKKSLAHRLFLKKRLYTFSMREGVTIQDHIDT 126
Query: 366 FTKITCAMEDI-GIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQA 542
F KI +E + +K+ + +KA LL LP+ YE +D +L G+ TL ++V +L +
Sbjct: 127 FNKIILDLEGVENVKICDEDKAFFLLSSLPKSYEGFVDTMLYGR--TTLTLEDVKASLSS 184
Query: 543 KAIR---DVETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXXGEEECHWCHQLG 713
K I+ ++E TS+ E E+ + + +C +C + G
Sbjct: 185 KEIQKNCELE-TSNGEGLMARTEKKKDQKNKNQGKGHGKNQETADKKKKKRKCFYCRKEG 243
Query: 714 HYXXXXXXXXXXXXXXXXXXXXXASVAQVGDEVLEYLLGGD--DSEVLTAETSEDVMYEW 887
HY S + GD + G D S L ++ + +W
Sbjct: 244 HY-----------IRDCFEKKKKESQEKSGDAAVASDDGSDGYQSADLLVASNSNTKGQW 292
Query: 888 IFDTGASYHMCPARENFSTYREVDGGKVLMGDKGSLKTVGVGSIK-FQMFDSAERTLTEV 1064
+ D+G S+H+CP + F Y VDGG+VLMG+ VG+ K + R+L EV
Sbjct: 293 VIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCKRSRCLMELLRSLHEV 352
Query: 1065 RHVPGLRKGLISLGVLEAAGYGFSGK 1142
RH P L++ LISLG+L++ GY F +
Sbjct: 353 RHAPRLKRNLISLGMLDSLGYFFKSR 378
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 150 bits (379), Expect = 1e-33
Identities = 106/378 (28%), Positives = 173/378 (45%), Gaps = 5/378 (1%)
Frame = +3
Query: 6 FDIVKFDGKNNFTNWQTEVKDILISLKQFKALKGKPSXXXXXXXXXXXXXXXXXACSTIR 185
F+I KF+G+ F+ W+ +++ IL A+ G+P+ A + +
Sbjct: 5 FEIEKFNGRK-FSLWKLKIRAILRKDNCLDAIDGRPADITDEKWKEMDDN----AVANLH 59
Query: 186 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 365
L + ++ + A + +AKE+WD L +Y K L + L+++LYT S++DHIN
Sbjct: 60 LAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINT 119
Query: 366 FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 545
+ + K+ E E+A +LL LP Y+ I N+ TL +D+V A+ +
Sbjct: 120 LNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEE 179
Query: 546 AIR----DVETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXXGEEECHWCHQLG 713
R + + SS +A++L + RGR T +C+ C G
Sbjct: 180 ESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRK--NNIKCYGCGMKG 237
Query: 714 HYXXXXXXXXXXXXXXXXXXXXXASVAQVGDEVLEYLLGGDDSEVLTAETSEDVMYE-WI 890
H VA D+ E L SE T+ E + + WI
Sbjct: 238 HVKKECWNNKKNGEKNSEATTSQGCVASTSDDG-EILY----SEAATSSEGERQLNDVWI 292
Query: 891 FDTGASYHMCPARENFSTYREVDGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLTEVRH 1070
D+GA++HM P R+ F +Y + G V MG+ +L+ GVG+I+ +M D R + VRH
Sbjct: 293 MDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRH 352
Query: 1071 VPGLRKGLISLGVLEAAG 1124
V GL+K L+S+G L+ G
Sbjct: 353 VKGLKKNLLSVGQLDDLG 370
>emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]
Length = 344
Score = 148 bits (374), Expect = 4e-33
Identities = 101/316 (31%), Positives = 152/316 (48%), Gaps = 1/316 (0%)
Frame = +3
Query: 180 IRLCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHI 359
I LCL +++ A E +LW KL+ ++M K L L L+++L+T S+ DH
Sbjct: 17 ILLCLGNKVLREIAEEDITAKLWLKLESLHMTKSLKNRLYLKKRLHTLQMKESMSIKDHF 76
Query: 360 NAFTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQ 539
N F K + +I +K++ ++A+ L+C LP YE +D ++ G+ TL +V AL
Sbjct: 77 NEFNKTIXDLRNIDVKVNYEDQAIFLMCSLPNSYEHFVDIMMYGRG--TLFIKDVRVALN 134
Query: 540 AKAIRDVETTSSS-EAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXXGEEECHWCHQLGH 716
++ ++ + S ++ V RGR G +C C + GH
Sbjct: 135 SRELKKMVFKSRKYDSGEGLVARGRTRKKNNGRRGRSRSKSR-----GNNKCFKCKKEGH 189
Query: 717 YXXXXXXXXXXXXXXXXXXXXXASVAQVGDEVLEYLLGGDDSEVLTAETSEDVMYEWIFD 896
Y A+ A+ + LL + S+D EWI D
Sbjct: 190 YVKNXPDRKGKENKRNYNSGD-ATFAKENSNTTDVLL-------VXVTNSDD---EWILD 238
Query: 897 TGASYHMCPARENFSTYREVDGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLTEVRHVP 1076
+G SYHM P + FSTY+ +DGGKVLMG+K + K VG+ I+ +M RTLT VRHVP
Sbjct: 239 SGCSYHMSPNGDWFSTYQPIDGGKVLMGNKVACKVVGIHXIQIKMHGGIIRTLTNVRHVP 298
Query: 1077 GLRKGLISLGVLEAAG 1124
L K LI L L++ G
Sbjct: 299 KLNKNLIFLRTLDSNG 314
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 147 bits (372), Expect = 6e-33
Identities = 106/383 (27%), Positives = 169/383 (44%), Gaps = 9/383 (2%)
Frame = +3
Query: 6 FDIVKFDGKNNFTNWQTEVKDILISLKQFKALKGKPSXXXXXXXXXXXXXXXXXACSTIR 185
+++ KF+G N F+ WQ ++D+LI K L S A S IR
Sbjct: 6 YEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLD-VDSKKPDTMKAEDWADLDERAASAIR 64
Query: 186 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 365
L L+ ++++N E +A+ +W +L+ +YM K L L L+++LY G + H+N
Sbjct: 65 LHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNV 124
Query: 366 FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 545
F + + ++G+K++E +KA++LL LP Y+ +L GK T++ +V +AL
Sbjct: 125 FNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGK--TTIELKDVTSALLLN 182
Query: 546 AIRDVETTSSSEAQSLFVE-RGR--QTXXXXXXXXXXXXXXXXXXXXGEEECHWCHQLGH 716
+ ++ Q+L E RGR Q C+ C+Q GH
Sbjct: 183 --EKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGH 240
Query: 717 YXXXXXXXXXXXXXXXXXXXXXASVAQVGDEVLEYLLGGDDSEVLTAETSEDVMY----- 881
+ + Q D+ ++ +D+ VL E+ M+
Sbjct: 241 F---------KRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPE 291
Query: 882 -EWIFDTGASYHMCPARENFSTYREVDGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLT 1058
EW+ DT AS+H P R+ F Y D G V MG+ K G+G I + L
Sbjct: 292 SEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLK 351
Query: 1059 EVRHVPGLRKGLISLGVLEAAGY 1127
+VRHVP LR LIS L+ GY
Sbjct: 352 DVRHVPDLRMNLISGIALDRDGY 374
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 147 bits (371), Expect = 8e-33
Identities = 104/383 (27%), Positives = 171/383 (44%), Gaps = 10/383 (2%)
Frame = +3
Query: 6 FDIVKFDGKNNFTNWQTEVKDILISLKQFKALKGKPSXXXXXXXXXXXXXXXXXACSTIR 185
F+I KF+G+N F+ W+ +++ IL A+ G+ + A + +
Sbjct: 5 FEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGRLADITDEKWKEMDDN----AVANLH 59
Query: 186 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 365
L + ++ + A + +AKE+WD L +Y K L + L+++LYT S++DHIN
Sbjct: 60 LAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLQMGESTSVTDHINT 119
Query: 366 FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 545
+ + K+ + E+A +LL LP Y+ I N+ TL +D+V A+ +
Sbjct: 120 LNTLFSQLTASDFKIAKNERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEE 179
Query: 546 AIR----DVETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXXGEEECHWCHQLG 713
R + + SS +A++L + RGR T +C+ C G
Sbjct: 180 ESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKK--NIKCYGCGMKG 237
Query: 714 HYXXXXXXXXXXXXXXXXXXXXXASVAQVGDEVLEYLLGGDDSEVLTAETSEDVMYE--- 884
H VA D D E+L +E + E
Sbjct: 238 HVKKECWNIKKNGEKNSEASTSQGCVASTSD----------DGEILYSEAATSSKGERRL 287
Query: 885 ---WIFDTGASYHMCPARENFSTYREVDGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTL 1055
WI D+GA++HM P R+ F +Y + G V MG+ +L+ GVG+I+ +M D R +
Sbjct: 288 NDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKI 347
Query: 1056 TEVRHVPGLRKGLISLGVLEAAG 1124
VRHV GL+K L+S+G L+ G
Sbjct: 348 QGVRHVKGLKKNLLSVGQLDDLG 370
>emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]
Length = 947
Score = 147 bits (371), Expect = 8e-33
Identities = 97/325 (29%), Positives = 148/325 (45%)
Frame = +3
Query: 168 ACSTIRLCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSL 347
A S I L L ++ A ELW KL+ +YM K L L + KLYTF G S+
Sbjct: 103 AQSAIILSLGDTMLREVAKAKPTAELWLKLESLYMTKSLANRLHKKIKLYTFKITPGMSI 162
Query: 348 SDHINAFTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVV 527
+H + F KI +E+I I + +KA++LL L Y + ++ G+D T +DEV
Sbjct: 163 EEHFDHFNKIILDLENIDITVSNEDKAILLLTSLDASYTNMKEAIMYGRDSMT--FDEVQ 220
Query: 528 TALQAKAIRDVETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXXGEEECHWCHQ 707
+ L + ++ E + + L + RGR +C CH+
Sbjct: 221 SILHPRELQKQEESKDESGEGLNI-RGRYDKREKKCKNLKAKSKSNTKKF---KCFICHK 276
Query: 708 LGHYXXXXXXXXXXXXXXXXXXXXXASVAQVGDEVLEYLLGGDDSEVLTAETSEDVMYEW 887
GH+ GD + +L G DS + D EW
Sbjct: 277 EGHFKKDCSDKRQNTIK---------KTVNEGDAAV--ILDGYDSAKVLNVAEMDSGKEW 325
Query: 888 IFDTGASYHMCPARENFSTYREVDGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLTEVR 1067
I D+G S+HMCP + F ++E +GG VL+G+ K +G ++ + +D ER L VR
Sbjct: 326 ILDSGCSFHMCPIKAWFEDFKEANGGHVLLGNNKHCKILGTSIVRIKHYDGIERVLEVVR 385
Query: 1068 HVPGLRKGLISLGVLEAAGYGFSGK 1142
++P L++ LISLG+L+ GY F K
Sbjct: 386 YIPELKRNLISLGMLDKLGYTFKSK 410
>gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vulgaris]
Length = 324
Score = 146 bits (368), Expect = 2e-32
Identities = 91/302 (30%), Positives = 152/302 (50%), Gaps = 2/302 (0%)
Frame = +3
Query: 168 ACSTIRLCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSL 347
AC TIR CL+RE + +ETSA +LW L+ ++KK L ++++L+ F + G ++
Sbjct: 39 ACGTIRSCLSREQKYVVKNETSAHKLWKALEDKFLKKSGQNKLLMKKRLFRFDYQQGTTM 98
Query: 348 SDHINAFTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVV 527
+ HI F ++ + ++ +K ++ + A++L+ LP ++E LL GKD +L D V
Sbjct: 99 NAHITMFNQLVAYLLNLDVKFEDEDLALMLVSSLPDEFEHLETTLLHGKDNVSL--DVVC 156
Query: 528 TALQAKAIR--DVETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXXGEEECHWC 701
+AL + +R D T S+ ++ V RG Q ++EC +C
Sbjct: 157 SALYSHELRKQDKMKTKSTTSEEALVTRGGQ---QSQTKERRGMCKSKGRVVAKDECAFC 213
Query: 702 HQLGHYXXXXXXXXXXXXXXXXXXXXXASVAQVGDEVLEYLLGGDDSEVLTAETSEDVMY 881
H+ GH+ A+VA+ +V D ++ + ++
Sbjct: 214 HEKGHW-----KKDCPKLQKKEKVPQDANVAECKSDV------ESDISLIVSLSASSYPD 262
Query: 882 EWIFDTGASYHMCPARENFSTYREVDGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLTE 1061
EWI D+G +YHMCP R+ F ++E+DGG V MG+ KT G+GSIK + D + R L +
Sbjct: 263 EWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTAGIGSIKLRNHDGSTRILRD 322
Query: 1062 VR 1067
VR
Sbjct: 323 VR 324
>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 867
Score = 139 bits (351), Expect = 2e-30
Identities = 108/362 (29%), Positives = 161/362 (44%), Gaps = 3/362 (0%)
Frame = +3
Query: 48 WQTEVKDILISLKQFKALKG-KPSXXXXXXXXXXXXXXXXXACSTIRLCLTREIMHNFAS 224
WQ EV D L A++G KP AC TIR CL+RE + +
Sbjct: 2 WQGEVLDSLFQQGLDIAIEGEKPKEVEEKDWSIINRL----ACGTIRSCLSREQKYAVKN 57
Query: 225 ETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINAFTKITCAMEDIGI 404
ETSA +LW L+ ++KK +
Sbjct: 58 ETSAHKLWKALEDKFLKKS---------------------------------------DV 78
Query: 405 KLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAKAIR--DVETTSSS 578
K ++ + A++LL LP ++E LL GK+ +L D V +AL + +R D T S+
Sbjct: 79 KFEDEDLALMLLSSLPDEFEHLETTLLHGKENVSL--DVVCSALYSHELRKQDKMKTKST 136
Query: 579 EAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXXGEEECHWCHQLGHYXXXXXXXXXXXXX 758
++ V RGRQ ++EC +CH+ GH+
Sbjct: 137 TSEEALVARGRQQSQTKERRGMSKSKGRAV---AKDECAFCHEKGHWKKDCPKLQKKEKV 193
Query: 759 XXXXXXXXASVAQVGDEVLEYLLGGDDSEVLTAETSEDVMYEWIFDTGASYHMCPARENF 938
A+VA+ +V D ++ + ++ + EWI D+G +YHMCP R+ F
Sbjct: 194 LQD-----ANVAECKSDV------ESDISLIVSLSASLYLDEWILDSGCTYHMCPIRDWF 242
Query: 939 STYREVDGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLTEVRHVPGLRKGLISLGVLEA 1118
++E+DGG V MG+ KTVG+GSIK + D + R L +VR+VP L+K LISLG LE+
Sbjct: 243 FEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALES 302
Query: 1119 AG 1124
G
Sbjct: 303 KG 304
>emb|CAN61435.1| hypothetical protein VITISV_033767 [Vitis vinifera]
Length = 1298
Score = 128 bits (321), Expect = 5e-27
Identities = 104/379 (27%), Positives = 161/379 (42%), Gaps = 7/379 (1%)
Frame = +3
Query: 12 IVKFDGKNNFTNWQTEVKDILISLKQFKALKG-KPSXXXXXXXXXXXXXXXXXACSTIRL 188
I KFDG +F W+ +++D L K L G KP IRL
Sbjct: 11 IEKFDG-TDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQ----VLGVIRL 65
Query: 189 CLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINAF 368
L+R + HN E + +L L MY K + L +KL+ S++ H+N F
Sbjct: 66 TLSRSVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEF 125
Query: 369 TKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAKA 548
IT + + I D+ +A+I+L LP +EA + ++ LKY+++ + AK
Sbjct: 126 NTITKQLSSVEIDFDDEIRALIVLTSLPNSWEAMRMAVSNSTGKEQLKYNDIRDLILAKE 185
Query: 549 IR--DVETTSSSEAQSLFVERGR---QTXXXXXXXXXXXXXXXXXXXXGEE-ECHWCHQL 710
IR D TS S + RGR + G++ +C C +
Sbjct: 186 IRQRDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKT 245
Query: 711 GHYXXXXXXXXXXXXXXXXXXXXXASVAQVGDEVLEYLLGGDDSEVLTAETSEDVMYEWI 890
GH+ S V +EV + LL DS + +W+
Sbjct: 246 GHFKRQCKSPKKKNEDD--------SANAVTEEVQDALLLAVDSP----------LDDWV 287
Query: 891 FDTGASYHMCPARENFSTYREVDGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLTEVRH 1070
D+GAS+H P RE Y D GKV + D +L VG+G ++ + + + L +VRH
Sbjct: 288 LDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRH 347
Query: 1071 VPGLRKGLISLGVLEAAGY 1127
+P LR+ LIS+G L+ G+
Sbjct: 348 IPDLRRNLISVGQLDDEGH 366