BLASTX nr result
ID: Paeonia23_contig00007108
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia23_contig00007108
(4744 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 253 0.0
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 218 e-180
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 197 e-169
emb|CAN71029.1| hypothetical protein VITISV_001707 [Vitis vinifera] 166 e-165
emb|CAN69431.1| hypothetical protein VITISV_024659 [Vitis vinifera] 172 e-156
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 237 e-153
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 266 e-151
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 262 e-150
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 247 e-148
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 246 e-147
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 246 e-147
emb|CAN65504.1| hypothetical protein VITISV_028342 [Vitis vinifera] 168 e-128
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 157 e-124
gb|AFB73911.1| polyprotein [Citrus sinensis] 187 e-113
gb|AFB73912.1| polyprotein [Citrus sinensis] 191 e-113
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 189 e-111
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 159 e-110
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 163 e-108
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 146 e-107
emb|CAN69998.1| hypothetical protein VITISV_006839 [Vitis vinifera] 134 e-105
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 253 bits (647), Expect(7) = 0.0
Identities = 158/396 (39%), Positives = 224/396 (56%), Gaps = 12/396 (3%)
Frame = -3
Query: 2093 IIRHFTVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTA 1914
I RHFTV+++P QN VAERMN TL+ K R M +AG + FW +A +AC+L+NR PS A
Sbjct: 541 ITRHFTVKKSPQQNGVAERMNRTLMEKERSMRFHAGLPEEFWAEAANHACYLINRSPSRA 600
Query: 1913 IGGKTHLEVWTGKPAHDYDFLHVFGCPAYFHVKED---*LDPRTKKAIFIRFETGVKGYK 1743
I K EVW+GKP DY L VFGC AY H+ +D L+P++ + +FI FE GVKGYK
Sbjct: 601 INFKCAEEVWSGKPV-DYSNLRVFGCSAYAHIPKDERTKLEPKSLECLFIGFEKGVKGYK 659
Query: 1742 LWDPKDRKTIQSSDVTFDE-----ASMLKPNGSQ*VENSSKTIEGSQQVETDVSPFSPYS 1578
LWD + K + S DV FDE S+ KP+ V +S +E ++Q +V+ P
Sbjct: 660 LWDIVNEKKVISRDVVFDEREAISISLAKPS----VADSEAQVEQNEQGNDEVAIEEPEH 715
Query: 1577 YRSDTYR*SK*GSSARVNCNE*T*EEC*ETRMVGNKYGGRCTPYHFICKHG*YDNS*WTD 1398
+ T ++ + G+ +P
Sbjct: 716 QQQPTVM----------------------AQVEQSPQRGQNSPI---------------- 737
Query: 1397 DDTENEAPVQESIATSRPKRN---VRNPGWLVTDMVAYALPIISKDVPSTYKEAMQSSEF 1227
+ + SIA +PKRN ++ G+ + V+ AL I D P+TY++A++S E
Sbjct: 738 --PQAPESFKRSIALDKPKRNRKPIQRFGFEPEEDVSRALSISQGD-PTTYEDAIESVES 794
Query: 1226 TIWDRAMYEEMQSLHKNET*ELSKLPKGKKAIGCMWVYTKKEGFSGED-VRFKARLVAKG 1050
W AM EEM+SLHKN EL PK +K +GC WV+ KKEG +D + +KARLVAKG
Sbjct: 795 AGWIGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAITYKARLVAKG 854
Query: 1049 YAQKKRIDYNEVFSPIVKHSSIRTLLAFVAQFDLKL 942
Y+QK+ +DY+E+FSP+VKH+SIR LL+ AQ+D+++
Sbjct: 855 YSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEI 890
Score = 152 bits (384), Expect(7) = 0.0
Identities = 70/117 (59%), Positives = 91/117 (77%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*KDKVSQHC 172
L+YAM+CTRPDL+Q +S+VS+YM + K HW+AVKWI +YL T +G+MF + +
Sbjct: 1090 LMYAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKWIFKYLKNTRQLGIMFERRQGEACV 1149
Query: 171 VGYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
G+VDSD+AGDLD+RR T G+VFT GGPVSW+ TLQ++ +STTEAEYMALTEA K
Sbjct: 1150 AGFVDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATLQAVTALSTTEAEYMALTEASK 1206
Score = 135 bits (340), Expect(7) = 0.0
Identities = 61/116 (52%), Positives = 83/116 (71%), Gaps = 2/116 (1%)
Frame = -1
Query: 2449 LQVGLNFCEHCVLGKQTRVKF--STAIHRTRGTLDYVHSYVWGPSKAVSLGGKDWFVSFV 2276
+ L FC +C LGKQTRV F S++ ++++G LDY+H+ VWGPS +S GG +FVSF+
Sbjct: 420 MSAALEFCRYCTLGKQTRVSFNLSSSENKSKGVLDYIHTDVWGPSATISKGGARYFVSFI 479
Query: 2275 DDFSRRVWVYTIRNKDEVLKVFIRWKKLIETQTGRKIKRLRLDNGGEYKSGSFLQV 2108
DDFSR+VW++ ++ K+EV F WK + QTGRKIK LR DNGGEY+ FLQ+
Sbjct: 480 DDFSRKVWIFFMKTKNEVFTKFKEWKAEVGNQTGRKIKCLRSDNGGEYRDKKFLQL 535
Score = 107 bits (268), Expect(7) = 0.0
Identities = 60/118 (50%), Positives = 77/118 (65%)
Frame = -1
Query: 703 DDSFIYLLLYVDDMLIAARSKSEIDMLKCRLSSKFEMKDLSEAKKILGMKIRRDGVKRRV 524
D I LLLYVDDMLIA R +I LK +L ++F+MKDL A+KILG++IRRD ++
Sbjct: 971 DGKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEIRRDRNAGKI 1030
Query: 523 WLS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSAFMSLSTYEERGYMTRVPYASAV 350
WLS + Y+ K+L++F M K S PLA HF+LSA S +E M VPYASAV
Sbjct: 1031 WLSQEKYIMKILERFNM-AEAKVVSIPLAAHFRLSAEQRPSDQKEIDMMKNVPYASAV 1087
Score = 107 bits (267), Expect(7) = 0.0
Identities = 48/78 (61%), Positives = 60/78 (76%)
Frame = -2
Query: 948 EISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR*WYKRFDW 769
EI +D+KTAFLHGDL+E IYM+QP F GKE+ VC+L+KSLYGLKQSPR WYK FD
Sbjct: 889 EIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPFDT 948
Query: 768 FMIGQKYTKSHHDHCVYF 715
+M+ YT+ +D CVY+
Sbjct: 949 YMLKIGYTRCQYDCCVYY 966
Score = 82.4 bits (202), Expect(7) = 0.0
Identities = 39/98 (39%), Positives = 61/98 (62%)
Frame = -1
Query: 2926 WLLNSTATYHVCTKRECFFSYEKLDTGVVLMGNDNPCRTVEIGTIRFKLHDEMIMELTEV 2747
W L++ T+H C R+ F +Y++ +T VLMGND+P R + IG ++ ++HD ++ L V
Sbjct: 263 WTLDTACTFHTCAHRDWFDTYKEGNTRSVLMGNDSPSRIMGIGMVKIRMHDGIVRALGNV 322
Query: 2746 RHIPDMTHNLISLGMLESKGFKVILEDGVSKVLHGALV 2633
RH P + NLISL ++ GF ++GV KV G +V
Sbjct: 323 RHTPGLNRNLISLSTMDRVGFWHKGQNGVLKVGKGQMV 360
Score = 29.6 bits (65), Expect(7) = 0.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 2607 NLYYLKGNAVLGDVAMVNSVVEDTTRIWHMHLAHASKKSL 2488
N+Y L G+ V G + ED T +W L H S++ L
Sbjct: 370 NMYKLTGSTVEGGAGVCTE--EDKTELWRRRLGHMSQRGL 407
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 218 bits (555), Expect(5) = e-180
Identities = 147/396 (37%), Positives = 204/396 (51%), Gaps = 12/396 (3%)
Frame = -3
Query: 2093 IIRHFTVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTA 1914
I+RH T TP QN +AER+N T++ KVR M+S +G K FW +A + A +L+NR PSTA
Sbjct: 562 IVRHKTCAYTPQQNGIAERLNRTIMDKVRSMLSRSGMEKKFWAEAASTAVYLINRSPSTA 621
Query: 1913 IGGKTHLEVWTGKPAHDYDFLHVFGCPAYFHVKED*LDPRTKKAIFIRFETGVKGYKLWD 1734
I E WTG D L FGC AY H + L+PR+KK IF + GVKGYK+W
Sbjct: 622 INFDLPEEKWTG-ALPDLSSLRKFGCLAYIHADQGKLNPRSKKGIFTSYPEGVKGYKVWV 680
Query: 1733 PKDRKTIQSSDVTFDEASMLKPNGSQ*VENSSKTIEGSQQVETDVSPFSPYSYRSDTYR* 1554
+D+K + S +V F E M K +S TI S + V+P +D
Sbjct: 681 LEDKKCVISRNVIFREQVMFKDLKG----DSQNTISESDLEDLRVNPDMNDQEFTDQ--- 733
Query: 1553 SK*GSSARVNCNE*T*EEC*ETRMVGNKYGGRCTPYHFICKHG*YDNS*WTDDDTENEAP 1374
G + + N N P H NS D E+E
Sbjct: 734 ---GGATQDNSN----------------------PSEATTSHNPVLNSPTHSQDEESEEE 768
Query: 1373 VQESI--------ATSRPKRNVR-NPGWLVTDMV--AYALPIISKDVPSTYKEAMQSSEF 1227
+++ R +R ++ NP + ++MV AY K P +Y+EA+ ++
Sbjct: 769 DSDAVEDLSTYQLVRDRVRRTIKANPKYNESNMVGFAYYSEDDGKPEPKSYQEALLDPDW 828
Query: 1226 TIWDRAMYEEMQSLHKNET*ELSKLPKGKKAIGCMWVYTKKEGFSG-EDVRFKARLVAKG 1050
W+ AM EEM S+ KN T +L P+ K IGC WV+T+K G G E RF ARLVAKG
Sbjct: 829 EKWNAAMKEEMVSMSKNHTWDLVTKPEKVKLIGCRWVFTRKAGIPGVEAPRFIARLVAKG 888
Query: 1049 YAQKKRIDYNEVFSPIVKHSSIRTLLAFVAQFDLKL 942
+ QK+ +DYNE+FSP+VKH SIR LL+ V ++++L
Sbjct: 889 FTQKEGVDYNEIFSPVVKHVSIRYLLSMVVHYNMEL 924
Score = 182 bits (461), Expect(5) = e-180
Identities = 103/270 (38%), Positives = 154/270 (57%), Gaps = 3/270 (1%)
Frame = -1
Query: 2932 SEWLLNSTATYHVCTKRECFFSYEKLDTGVVLMGNDNPCRTVEIGTIRFKLHDEMIMELT 2753
+EW+L++ ++H+ +++ F +++L +G V MGND IG+I+ + D + LT
Sbjct: 283 NEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKIRNSDGSQVILT 342
Query: 2752 EVRHIPDMTHNLISLGMLESKGFKVILEDGVSKVLHGALVIIARRSCEKLILFEG*CSSR 2573
+VR++P+MT NLISLG LE +G +DG+ K++ G I+ + + L + +G +
Sbjct: 343 DVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTLYILDG-VTEE 401
Query: 2572 *XXXXXXXXXXXY*DMAYALGACK*KVSICGEIGTAERCYDLQV--GLNFCEHCVLGKQT 2399
LG K EI + C +V L FCE CV GKQ
Sbjct: 402 GESHSSAEVKDETALWHSRLGHMSQKGM---EILVKKGCLRREVIKELEFCEDCVYGKQH 458
Query: 2398 RVKFSTAIHRTRGTLDYVHSYVWG-PSKAVSLGGKDWFVSFVDDFSRRVWVYTIRNKDEV 2222
RV F+ A H T+ L YVHS +WG P SLG +F+SFVDD+SR+VW+Y +R KDE
Sbjct: 459 RVSFAPAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYSRKVWIYFLRKKDEA 518
Query: 2221 LKVFIRWKKLIETQTGRKIKRLRLDNGGEY 2132
+ F+ WKK++E Q+ RK+K+LR DNG EY
Sbjct: 519 FEKFVEWKKMVENQSDRKVKKLRTDNGLEY 548
Score = 120 bits (300), Expect(5) = e-180
Identities = 57/117 (48%), Positives = 81/117 (69%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*KDKVSQHC 172
++Y+M+ TRPDL+ + ++SR+M K+HWQAVKW+L+Y+ GT L F K +
Sbjct: 1124 IMYSMIGTRPDLAYSLGVISRFMSKPLKDHWQAVKWVLRYMRGTEKKKLCFRKQE-DFLL 1182
Query: 171 VGYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
GY DSDY + D RR TG+VFT+ G +SW+ LQ ++ +S+TEAEYMALTEA+K
Sbjct: 1183 RGYCDSDYGSNFDTRRSITGYVFTVGGNTISWKSKLQKVVAISSTEAEYMALTEAVK 1239
Score = 105 bits (262), Expect(5) = e-180
Identities = 62/117 (52%), Positives = 79/117 (67%)
Frame = -1
Query: 700 DSFIYLLLYVDDMLIAARSKSEIDMLKCRLSSKFEMKDLSEAKKILGMKIRRDGVKRRVW 521
D++IYLLLYVDDMLIA+ +KSE++ LK LS +FEMKDL +AKKILGM+I RD +
Sbjct: 1006 DTYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDLGDAKKILGMEISRDRDAGLLT 1065
Query: 520 LS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSAFMSLSTYEERGYMTRVPYASAV 350
LS + Y++KVL+ F M N K STPL HFKL A E+ M VPYA+ +
Sbjct: 1066 LSQEGYVKKVLRSFQM-DNAKPVSTPLGIHFKLKAATDKEYEEQFERMKIVPYANTI 1121
Score = 102 bits (254), Expect(5) = e-180
Identities = 47/80 (58%), Positives = 60/80 (75%)
Frame = -2
Query: 948 EISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR*WYKRFDW 769
E+ +D+KTAFLHG L+E+IYM QP F++ + VC L++SLYGLKQSPR W RFD
Sbjct: 923 ELQQMDVKTAFLHGFLEEEIYMAQPEGFEIKRGSNKVCLLKRSLYGLKQSPRQWNLRFDE 982
Query: 768 FMIGQKYTKSHHDHCVYFRK 709
FM G KYT+S +D CVYF+K
Sbjct: 983 FMRGIKYTRSAYDSCVYFKK 1002
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 197 bits (501), Expect(8) = e-169
Identities = 135/408 (33%), Positives = 195/408 (47%), Gaps = 24/408 (5%)
Frame = -3
Query: 2093 IIRHFTVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTA 1914
I RH T TP QN VAERMN T++ KVRC+++ +G + FW +A A +L+NR P++A
Sbjct: 585 IERHRTCTYTPQQNGVAERMNRTIMEKVRCLLNKSGVEEVFWAEAAATAAYLINRSPASA 644
Query: 1913 IGGKTHLEVWTGKPAHDYDFLHVFGCPAYFHVKED*LDPRTKKAIFIRFETGVKGYKLWD 1734
I E+W + Y L FG AY H + L PR K F+ + G KGYK+W
Sbjct: 645 INHNVPEEMWLNRKP-GYKHLRKFGSIAYVHQDQGKLKPRALKGFFLGYPAGTKGYKVWL 703
Query: 1733 PKDRKTIQSSDVTFDEASMLKP----------------NGSQ*VENSSKTIEGSQ---QV 1611
++ K + S +V F E+ + + S+ +N GS Q+
Sbjct: 704 LEEEKCVISRNVVFQESVVYRDLKVKEDDTDNLNQKETTSSEVEQNKFAEASGSGGVIQL 763
Query: 1610 ETDVSPFSPYSYRSDTYR*SK*GSSARVNCNE*T*EEC*ETRMVGNKYGGRCTPYHFICK 1431
++D P + SD S V +E T E T + K
Sbjct: 764 QSDSEPITEGEQSSD--------SEEEVEYSEKTQETPKRTGLTTYK------------- 802
Query: 1430 HG*YDNS*WTDDDTENEAPVQESIATSRPKRNVRNPGWLVTDM-VAYALPIISKDV---P 1263
+A R +RN+ P + V +AL ++ + P
Sbjct: 803 -----------------------LARDRVRRNINPPTRFTEESSVTFALVVVENCIVQEP 839
Query: 1262 STYKEAMQSSEFTIWDRAMYEEMQSLHKNET*ELSKLPKGKKAIGCMWVYTKKEGFSG-E 1086
+Y+EAM+S + WD A ++EM SL KN T +L PK +K IGC W++ K G G E
Sbjct: 840 QSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKDRKIIGCRWLFKLKSGIPGVE 899
Query: 1085 DVRFKARLVAKGYAQKKRIDYNEVFSPIVKHSSIRTLLAFVAQFDLKL 942
RFKARLVAKGY Q++ +DY E+F+P+VKH SIR L++ V DL+L
Sbjct: 900 PTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMSLVVDKDLEL 947
Score = 129 bits (324), Expect(8) = e-169
Identities = 60/117 (51%), Positives = 84/117 (71%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*KDKVSQHC 172
++YAM+ TRPDL+ + ++SRYM HW+AVKW+++YL G D+ L+F K+K
Sbjct: 1144 IMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVKWVMRYLKGAQDLNLVFTKEK-DFTV 1202
Query: 171 VGYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
GY DS+YA DLD+RR +G+VFT+ G VSW+ +LQ ++ MSTTEAEY+AL EA K
Sbjct: 1203 TGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKASLQPVVAMSTTEAEYIALAEAAK 1259
Score = 111 bits (277), Expect(8) = e-169
Identities = 48/108 (44%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Frame = -1
Query: 2437 LNFCEHCVLGKQTRVKFSTAIHRTRGTLDYVHSYVWG-PSKAVSLGGKDWFVSFVDDFSR 2261
L FCEHCV+GK +V F+ H + L YVH+ +WG P+ S+ GK +F+S +DD +R
Sbjct: 469 LEFCEHCVMGKSKKVSFNVGKHTSEDALSYVHADLWGSPNVTPSISGKQYFLSIIDDKTR 528
Query: 2260 RVWVYTIRNKDEVLKVFIRWKKLIETQTGRKIKRLRLDNGGEYKSGSF 2117
+VW+Y +++KDE F WK L+E Q +K+K LR DNG E+ + F
Sbjct: 529 KVWLYFLKSKDETFDKFCEWKSLVENQVNKKVKCLRTDNGLEFCNSRF 576
Score = 102 bits (254), Expect(8) = e-169
Identities = 45/79 (56%), Positives = 58/79 (73%)
Frame = -2
Query: 948 EISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR*WYKRFDW 769
E+ +D+KT FLHGDL+E++YM QP F E+ VC+L+KSLYGLKQSPR W KRFD
Sbjct: 946 ELEQMDVKTTFLHGDLEEELYMEQPEGFVSDSSENKVCRLKKSLYGLKQSPRQWNKRFDR 1005
Query: 768 FMIGQKYTKSHHDHCVYFR 712
FM Q++ +S HD CVY +
Sbjct: 1006 FMSSQQFIRSEHDACVYVK 1024
Score = 90.9 bits (224), Expect(8) = e-169
Identities = 56/118 (47%), Positives = 77/118 (65%)
Frame = -1
Query: 703 DDSFIYLLLYVDDMLIAARSKSEIDMLKCRLSSKFEMKDLSEAKKILGMKIRRDGVKRRV 524
+ FIYLLLYVDDMLIA SK+EI+ +K +LS++FEMKD+ A +ILG+ I RD +
Sbjct: 1028 EHDFIYLLLYVDDMLIAGASKAEINRVKEQLSTEFEMKDMGGASRILGIDIYRDRKGGVL 1087
Query: 523 WLS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSAFMSLSTYEERGYMTRVPYASAV 350
LS + Y++KVL +F M G K + P+ HFKL+A + +E VPY+SAV
Sbjct: 1088 KLSQEIYIRKVLDRFNMSG-AKMTNAPVGAHFKLAA---VREEDECVDTDVVPYSSAV 1141
Score = 60.8 bits (146), Expect(8) = e-169
Identities = 31/92 (33%), Positives = 52/92 (56%)
Frame = -1
Query: 2926 WLLNSTATYHVCTKRECFFSYEKLDTGVVLMGNDNPCRTVEIGTIRFKLHDEMIMELTEV 2747
W+L+S T H+ ++R+ F S+++ +L+G+D+ + GTIR H I L V
Sbjct: 308 WILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDHSVESQGQGTIRIDTHGGTIKILENV 367
Query: 2746 RHIPDMTHNLISLGMLESKGFKVILEDGVSKV 2651
+++P + NLIS G L+ G++ E G KV
Sbjct: 368 KYVPHLRRNLISTGTLDKLGYR--HEGGEGKV 397
Score = 35.8 bits (81), Expect(8) = e-169
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = -2
Query: 3171 KDRQKPGGKGKAHSKSTGNSLAHDECAFCHRSGH*KKECPKIKRK 3037
++ QK GG+GK S+S NS C +C + GH KK+C K+K
Sbjct: 234 RNNQK-GGQGKGRSRS--NSKTKVPCWYCKKEGHVKKDCYSRKKK 275
Score = 26.2 bits (56), Expect(8) = e-169
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -2
Query: 2655 RFFTVH*LLLQDVRVRNLYYLKGNAVLGDVAMVNSVVEDTTRIWHMHLAHASKKSL 2488
R+F + L+ LY L G+ V+ ++ + + T +WH L H S +L
Sbjct: 398 RYFKNNKTALRGSLSNGLYVLDGSTVMSELCNAETD-KVKTALWHSRLGHMSMNNL 452
>emb|CAN71029.1| hypothetical protein VITISV_001707 [Vitis vinifera]
Length = 1286
Score = 166 bits (420), Expect(6) = e-165
Identities = 130/385 (33%), Positives = 188/385 (48%), Gaps = 6/385 (1%)
Frame = -3
Query: 2078 TVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTAIGGKT 1899
T+ TP QN VAERMN TL + R M +AG K+FW A++ A +L+NR PS + +
Sbjct: 553 TIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVSTAAYLINRGPSVPMEFRL 612
Query: 1898 HLEVWTGKPAHDYDFLHVFGCPAYFHVKED*---LDPRTKKAIFIRFETGVKGYKLWDPK 1728
EVW+GK + L VFGC +Y ++ D LD ++K FI + GY+ WD +
Sbjct: 613 PEEVWSGKEVK-FSHLKVFGCISYVYIDSDARSKLDAKSKICFFIDYGDEKFGYRFWDKQ 671
Query: 1727 DRKTIQSSDVTFDEASMLKPNGSQ*VENSSKTIEGSQQVETDVSPFSPYSYRSDTYR*SK 1548
+RK I+S +V F+E M K + S + +++ S F
Sbjct: 672 NRKIIRSRNVIFNEQVMYK--------DRSSVVSDVTEIDQKKSEF-------------- 709
Query: 1547 *GSSARVNCNE*T*EEC*ETRMVGNKYGGRCTPYHFICKHG*YDNS*WTDDDTEN-EAPV 1371
VN +E T E+ + + GG ++D EN + V
Sbjct: 710 ------VNLDELT-----ESTV---QKGG--------------------EEDKENVNSQV 735
Query: 1370 QESIATSRPKRNVRN--PGWLVTDMVAYALPIISKDVPSTYKEAMQSSEFTIWDRAMYEE 1197
S +R+ RN P + ++ Y L + P Y EA+Q + W+ AM +E
Sbjct: 736 DLSTXVVEVRRSSRNXRPPQRYSPVLNYLL-LTDGGXPECYDEALQDENSSKWELAMKDE 794
Query: 1196 MQSLHKNET*ELSKLPKGKKAIGCMWVYTKKEGFSGEDVRFKARLVAKGYAQKKRIDYNE 1017
M SL N+T EL++LP GKKA+ WVY K G R+K RLV KG+ Q + IDY E
Sbjct: 795 MDSLLGNQTWELTELPVGKKALHNKWVYXIKNEHDGSK-RYKXRLVVKGFQQXEGIDYTE 853
Query: 1016 VFSPIVKHSSIRTLLAFVAQFDLKL 942
+FSP+VK S+IR +L VA +L L
Sbjct: 854 IFSPVVKMSTIRLVLGMVAAENLHL 878
Score = 155 bits (392), Expect(6) = e-165
Identities = 91/272 (33%), Positives = 139/272 (51%), Gaps = 1/272 (0%)
Frame = -1
Query: 2929 EWLLNSTATYHVCTKRECFFSYEKLDTGVVLMGNDNPCRTVEIGTIRFKLHDEMIMELTE 2750
+W+L+S A++H RE +Y D G V + + + V +G +R L + + L +
Sbjct: 285 DWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEK 344
Query: 2749 VRHIPDMTHNLISLGMLESKGFKVILEDGVSKVLHGALVIIARRSCEKLILFEG*CSSR* 2570
VRHIPD+ NLIS+G L+ +G ++ G KV GA + SC + + S+
Sbjct: 345 VRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARMT----SCPRDTIAVADASTDT 400
Query: 2569 XXXXXXXXXXXY*DMAYALGACK*KVSICGEIGTAERCYDLQVGLNFCEHCVLGKQTRVK 2390
M L G++ + + + E C+LGKQ RV
Sbjct: 401 SLWHRRLGHMSEKXMKMLLSK--------GKLPELK-----SIDFDMXESCILGKQKRVS 447
Query: 2389 FSTAIHRTRGT-LDYVHSYVWGPSKAVSLGGKDWFVSFVDDFSRRVWVYTIRNKDEVLKV 2213
F + L+ VH+ +WGPS SLGG ++++F+DD SR+VWVY ++NK +V
Sbjct: 448 FLKTSRTPKAEKLELVHTDLWGPSPIASLGGSRYYITFIDDSSRKVWVYFLKNKSDVFVT 507
Query: 2212 FIRWKKLIETQTGRKIKRLRLDNGGEYKSGSF 2117
F +WK ++ET+TG K+K LR DNGGEY G F
Sbjct: 508 FKKWKAMVETETGLKVKCLRSDNGGEYIDGGF 539
Score = 133 bits (334), Expect(6) = e-165
Identities = 65/117 (55%), Positives = 83/117 (70%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*KDKVSQHC 172
L+YAMVCTRPD++ V +VSR+M K+HW+ VKWIL+YL G++D L F S
Sbjct: 1077 LMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEVVKWILRYLKGSLDTCLCF--TGASLKL 1134
Query: 171 VGYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
GYVD+D+AGD+D R+ TTG VFTL G +SW LQ I+ +STTEAEY+A TEA K
Sbjct: 1135 QGYVDADFAGDIDSRKSTTGFVFTLGGTAISWASNLQKIVTLSTTEAEYVAATEAGK 1191
Score = 110 bits (274), Expect(6) = e-165
Identities = 63/125 (50%), Positives = 82/125 (65%)
Frame = -1
Query: 724 CLLSQTIDDSFIYLLLYVDDMLIAARSKSEIDMLKCRLSSKFEMKDLSEAKKILGMKIRR 545
C ++ D+S+I LLLYVDDMLIA +I+ LK +LS +F MKDL AK+ILGM+I R
Sbjct: 951 CCYFKSFDNSYIILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIR 1010
Query: 544 DGVKRRVWLS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSAFMSLSTYEERGYMTRVP 365
D + LS Y++KVL +F M K STPL HFKLS S T E+R +M++VP
Sbjct: 1011 DKANGTLKLSQSEYVKKVLSRFNM-NEAKPVSTPLGSHFKLSKEQSPKTEEKRDHMSKVP 1069
Query: 364 YASAV 350
YASA+
Sbjct: 1070 YASAI 1074
Score = 103 bits (258), Expect(6) = e-165
Identities = 47/78 (60%), Positives = 58/78 (74%)
Frame = -2
Query: 945 ISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR*WYKRFDWF 766
+ LD+KTAFLHGDL+E +YM QP F V G+E+ VCKLRKSLYGLKQ+PR WYK+FD F
Sbjct: 878 LEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNF 937
Query: 765 MIGQKYTKSHHDHCVYFR 712
M + + DHC YF+
Sbjct: 938 MHRIGFKRCEADHCCYFK 955
Score = 32.0 bits (71), Expect(6) = e-165
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -2
Query: 3177 RTKDRQKPGGKGKAHSKSTGNSLAHDECAFCHRSGH*KKECPKIKRKNND 3028
R ++ + + ++S S +C C ++GH K++C K+KN D
Sbjct: 212 RNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTGHFKRQCKSPKKKNED 261
>emb|CAN69431.1| hypothetical protein VITISV_024659 [Vitis vinifera]
Length = 1287
Score = 172 bits (437), Expect(6) = e-156
Identities = 132/385 (34%), Positives = 187/385 (48%), Gaps = 6/385 (1%)
Frame = -3
Query: 2078 TVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTAIGGKT 1899
T+ TP QN VAERMN TL + R M +AG K+FW A++ A +L+NR PS + +
Sbjct: 548 TIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVSTAAYLINRGPSVPMEFRL 607
Query: 1898 HLEVWTGKPAHDYDFLHVFGCPAYFHVKED*---LDPRTKKAIFIRFETGVKGYKLWDPK 1728
EVW+GK + L VFGC +Y H+ D LD ++K FI + GY+ WD +
Sbjct: 608 PEEVWSGKEVK-FSHLKVFGCISYVHIDSDARSKLDAKSKICFFIGYGDEKFGYRFWDEQ 666
Query: 1727 DRKTIQSSDVTFDEASMLKPNGSQ*VENSSKTIEGSQQVETDVSPFSPYSYRSDTYR*SK 1548
+RK I+S +V F+E M K + S + +++ S F
Sbjct: 667 NRKIIRSRNVIFNEQVMYK--------DRSSVVSDVTEIDQKKSEF-------------- 704
Query: 1547 *GSSARVNCNE*T*EEC*ETRMVGNKYGGRCTPYHFICKHG*YDNS*WTDDDTEN-EAPV 1371
VN +E T+ K G ++D EN + V
Sbjct: 705 ------VNLDE-------LTKSTVQKGG---------------------EEDKENVNSQV 730
Query: 1370 QESIATSRPKRNVRN--PGWLVTDMVAYALPIISKDVPSTYKEAMQSSEFTIWDRAMYEE 1197
S +R+ RN P + ++ Y L + P Y EA+Q + W+ AM +E
Sbjct: 731 DLSTPVVEVRRSSRNTRPPQRYSPVLNYLL-LTDGGEPECYDEALQDENSSKWELAMKDE 789
Query: 1196 MQSLHKNET*ELSKLPKGKKAIGCMWVYTKKEGFSGEDVRFKARLVAKGYAQKKRIDYNE 1017
M SL N+T EL++LP GKKA+ WVY K G R+KARLV KG+ QK+ IDY E
Sbjct: 790 MDSLLGNQTWELTELPVGKKALHNKWVYRIKNEHDGSK-RYKARLVVKGFQQKEGIDYTE 848
Query: 1016 VFSPIVKHSSIRTLLAFVAQFDLKL 942
+FSP+VK S+IR +L VA +L L
Sbjct: 849 IFSPVVKMSTIRLVLGMVAAENLHL 873
Score = 134 bits (338), Expect(6) = e-156
Identities = 66/117 (56%), Positives = 84/117 (71%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*KDKVSQHC 172
L+YAMVCTRPD++ V +VSR+M K+HW+AVKWIL+YL G++D L F S
Sbjct: 1078 LMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCF--TGASLKL 1135
Query: 171 VGYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
GYVD+D+AGD+D R+ TTG VFTL G +SW LQ I+ +STTEAEY+A TEA K
Sbjct: 1136 QGYVDADFAGDIDSRKSTTGFVFTLGGTXISWTSNLQKIVTLSTTEAEYVAATEAGK 1192
Score = 127 bits (319), Expect(6) = e-156
Identities = 84/280 (30%), Positives = 130/280 (46%), Gaps = 9/280 (3%)
Frame = -1
Query: 2929 EWLLNSTATYHVCTKRECFFSYEKLDTGVVLMGNDNPCRTVEIGTIRFKLHDEMIMELTE 2750
+W+L+S A++H RE +Y D G V + + + V +G +R L + + L +
Sbjct: 285 DWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEK 344
Query: 2749 VRHIPDMTHNLISLGMLESKGFKVILEDGVSKVLHGALVI--------IARRSCEKLILF 2594
VRHIPD+ NLIS+G L+ +G ++ G KV GA V+ + SC + +
Sbjct: 345 VRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLAHGKKTGTLYMTSCPRDTIA 404
Query: 2593 EG*CSSR*XXXXXXXXXXXY*DMAYALGACK*KVSICGEIGTAERCYDLQVGLNFCEHCV 2414
S+ M L G++ + + + CE C+
Sbjct: 405 VADASTDTSLWHRRLGHMSEKGMKMLLSK--------GKLPELK-----SIDFDMCESCI 451
Query: 2413 LGKQTRVKF-STAIHRTRGTLDYVHSYVWGPSKAVSLGGKDWFVSFVDDFSRRVWVYTIR 2237
LGKQ +V F T L+ VH+ +WGPS SLGG ++++F+DD SR+
Sbjct: 452 LGKQKKVSFLKTGRTPKAEKLELVHTDLWGPSPVASLGGSRYYITFIDDSSRK------- 504
Query: 2236 NKDEVLKVFIRWKKLIETQTGRKIKRLRLDNGGEYKSGSF 2117
+WK ++ET+T K+K LR DNGGEY G F
Sbjct: 505 ----------KWKXMVETETSLKVKCLRSDNGGEYIDGGF 534
Score = 102 bits (255), Expect(6) = e-156
Identities = 62/131 (47%), Positives = 81/131 (61%), Gaps = 6/131 (4%)
Frame = -1
Query: 724 CLLSQTIDDSFIYLLLYVDDMLIAA------RSKSEIDMLKCRLSSKFEMKDLSEAKKIL 563
C ++ D+S+I LLLYVDDMLI + +I+ LK +LS +F MKDL AK+IL
Sbjct: 946 CCYVKSFDNSYIILLLYVDDMLIVGSDIEKINNLKKINNLKKQLSKQFAMKDLGAAKQIL 1005
Query: 562 GMKIRRDGVKRRVWLS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSAFMSLSTYEERG 383
GM+I RD + LS Y++KVL +F M K TPL HFKLS S T EER
Sbjct: 1006 GMRIIRDKANGTLKLSQSEYVKKVLSRFNM-NEAKPVXTPLGSHFKLSKEQSPKTEEERD 1064
Query: 382 YMTRVPYASAV 350
+M++VPYASA+
Sbjct: 1065 HMSKVPYASAI 1075
Score = 98.6 bits (244), Expect(6) = e-156
Identities = 45/78 (57%), Positives = 56/78 (71%)
Frame = -2
Query: 945 ISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR*WYKRFDWF 766
+ LD+KTAFLHGDL+E +YM QP F V G+E+ VCKLRKSLYGLKQ+PR WYK+FD
Sbjct: 873 LEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNX 932
Query: 765 MIGQKYTKSHHDHCVYFR 712
M + + DHC Y +
Sbjct: 933 MHRIGFKRCEADHCCYVK 950
Score = 32.7 bits (73), Expect(6) = e-156
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Frame = -2
Query: 3195 ALVAQERTKDRQKPGGKGKAHSKSTGNSLAHD------ECAFCHRSGH*KKECPKIKRKN 3034
AL + R + + +G+++S+++ + + +C C ++GH K++C K+KN
Sbjct: 200 ALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTGHFKRQCKSPKKKN 259
Query: 3033 ND 3028
D
Sbjct: 260 ED 261
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 237 bits (604), Expect(6) = e-153
Identities = 155/406 (38%), Positives = 211/406 (51%), Gaps = 22/406 (5%)
Frame = -3
Query: 2093 IIRHFTVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTA 1914
I RH TVR TP QN VAERMN TLL + RCM+SNAG + FW +A++ AC+L+NR P T
Sbjct: 558 IARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTG 617
Query: 1913 IGGKTHLEVWTGKPAHDYDFLHVFGCPAYFHVKED*LDPRTKKAIFIRFETGVKGYKLWD 1734
I KT +E+W+GK A DY L FGC AY+HV E L+PR KK +F+ + GVKG+++W
Sbjct: 618 IQCKTPMEMWSGKAA-DYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWS 676
Query: 1733 PKDRKTIQSSDVTFDEASML----KPNGS------------Q*VENSSKTIEGSQ----- 1617
P +++ I S +V FDE+ +L KP + Q ++N S E +
Sbjct: 677 PAEKRVIMSRNVVFDESPLLRTIVKPTTTSETGSLDKQVEFQVIQNESDLKEPEEEDQEP 736
Query: 1616 QVETDVSPFSPYSYRSDTYR*SK*GSSARVNCNE*T*EEC*ETRMVGNKYGGRCTPYHFI 1437
Q ETD+ P S SD ++ RV T +YG
Sbjct: 737 QTETDI----PESMPSDIHQSIAQDRPRRVGVRPPT------------RYG--------- 771
Query: 1436 CKHG*YDNS*WTDDDTENEAPVQESIATSRPKRNVRNPGWLVTDMVAYALPIISKDVPST 1257
+D V E + TS P Y I+S D
Sbjct: 772 -----------FEDMVGYALQVAEEVDTSEPS--------------TYKEAILSSDSEK- 805
Query: 1256 YKEAMQSSEFTIWDRAMYEEMQSLHKNET*ELSKLPKGKKAIGCMWVYTKKEGFS-GEDV 1080
W AM +EM+SLHKN+T +L P G+K I C WV+ KKEG S E V
Sbjct: 806 ------------WFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGV 853
Query: 1079 RFKARLVAKGYAQKKRIDYNEVFSPIVKHSSIRTLLAFVAQFDLKL 942
++KAR+VA+G+ Q++ +DYNE+FSP+V+H+SIR LLA VA +L+L
Sbjct: 854 KYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLEL 899
Score = 207 bits (527), Expect(6) = e-153
Identities = 120/278 (43%), Positives = 159/278 (57%), Gaps = 6/278 (2%)
Frame = -1
Query: 2926 WLLNSTATYHVCTKRECFFSYEKLDTGVVLMGNDNPCRTVEIGTIRFKLHDEMIMELTEV 2747
W+L+S A+YH+C +RE F +YE++D G + M N + C+ V G+I+ + HD L EV
Sbjct: 279 WVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEV 338
Query: 2746 RHIPDMTHNLISLGMLESKGFKVILEDGVSKVLHGALVIIARRSCEKLILFEG*CSSR*X 2567
RH+P MT NLISL +L+SKGF +DGV +V G+ +I+ L +G S+
Sbjct: 339 RHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQG--STVTG 396
Query: 2566 XXXXXXXXXXY*DMAYALGACK*KVSICGEIGTAERCY-DLQVG-----LNFCEHCVLGK 2405
DM ++ GE G DL G L FCEHCV GK
Sbjct: 397 SAHVASSEFHQKDMTKLWHI---RLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGK 453
Query: 2404 QTRVKFSTAIHRTRGTLDYVHSYVWGPSKAVSLGGKDWFVSFVDDFSRRVWVYTIRNKDE 2225
R KF AIHRT+GTLDY+HS WGP + SLGG +FVS +DD+SR WVY +++K E
Sbjct: 454 LHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSE 513
Query: 2224 VLKVFIRWKKLIETQTGRKIKRLRLDNGGEYKSGSFLQ 2111
+ F WK L+E QTG+KIKRLR DNG E+ F Q
Sbjct: 514 AFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQ 551
Score = 120 bits (301), Expect(6) = e-153
Identities = 53/81 (65%), Positives = 68/81 (83%)
Frame = -2
Query: 948 EISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR*WYKRFDW 769
E+ LD+KTAFLHG+L+E+IYMTQP F+V GKE++VCKL+KSLYGLKQSPR WYKRFD
Sbjct: 898 ELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDS 957
Query: 768 FMIGQKYTKSHHDHCVYFRKL 706
+M+ YT+S +D CVY+ +L
Sbjct: 958 YMVKLGYTRSSYDCCVYYNRL 978
Score = 33.1 bits (74), Expect(6) = e-153
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -2
Query: 3171 KDRQKPGGKGKAHSKSTGNSLAHDECAFCHRSGH*KKECPKIKRKN 3034
K R+ G K K SK + D C +C GH K +CPK K+++
Sbjct: 203 KGRKNGGKKNKPMSKG---AKPDDVCNYCKEKGHWKFDCPKKKKQS 245
Score = 32.3 bits (72), Expect(6) = e-153
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -3
Query: 3434 LSEYMNDFAKLLADLANLDEIVKDDDRAXXXXXXXXLEYEHFKKTLLYGKSIV 3276
L E++ LL +L N+D ++D+D A + +E+F ++ + GK V
Sbjct: 115 LREHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTV 167
Score = 27.7 bits (60), Expect(6) = e-153
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 3528 LEEKYFTKTLENRLYLKGRFYTFRRRPNISMAERV 3424
LE Y TK+L N+L LK R + R + E +
Sbjct: 85 LESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHL 119
Score = 142 bits (358), Expect(2) = 1e-60
Identities = 74/119 (62%), Positives = 88/119 (73%), Gaps = 2/119 (1%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*KDKVSQHC 172
L+YAMVCTRPDL+ VS+VSR+M +EHWQAVK I +YL GT DVGL++ D C
Sbjct: 1099 LMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDT---QC 1155
Query: 171 V--GYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
+ GY DSDYAGD+D RR TG+VFTL G VSW+ TLQ + +STTEAEYMALTEA K
Sbjct: 1156 LVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAAK 1214
Score = 122 bits (305), Expect(2) = 1e-60
Identities = 69/134 (51%), Positives = 95/134 (70%), Gaps = 1/134 (0%)
Frame = -1
Query: 748 YQKSP*SLCLLSQTI-DDSFIYLLLYVDDMLIAARSKSEIDMLKCRLSSKFEMKDLSEAK 572
Y +S C+ + DDSFIYL+LYVDDMLIAA+ K +I LK LS++FEMKDL A+
Sbjct: 964 YTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAAR 1023
Query: 571 KILGMKIRRDGVKRRVWLS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSAFMSLSTYE 392
KILGM+I RD +R+++LS ++Y+QKVL +F M ++K TP A + L+A + + E
Sbjct: 1024 KILGMEIIRDRERRKLFLSQRSYIQKVLARFGM-SSSKPIDTPSAANIHLTAMFAPQSEE 1082
Query: 391 ERGYMTRVPYASAV 350
E+ YM+RVPYASAV
Sbjct: 1083 EKEYMSRVPYASAV 1096
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 266 bits (680), Expect(4) = e-151
Identities = 160/391 (40%), Positives = 221/391 (56%), Gaps = 7/391 (1%)
Frame = -3
Query: 2093 IIRHFTVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTA 1914
I+RH+TV TP QN VAERMN T++ K RCM+SNA K FW +A++ AC+L+NR PS A
Sbjct: 489 IVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYA 548
Query: 1913 IGGKTHLEVWTGKPAHDYDFLHVFGCPAYFHVKED*LDPRTKKAIFIRFETGVKGYKLWD 1734
I KT +EVW+G PA+ Y L VFGC AY HV L+PR K IF+ + +GVKGYKLW
Sbjct: 549 IDKKTPIEVWSGSPAN-YSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWC 607
Query: 1733 PKDRKTIQSSDVTFDEASMLKPNGSQ*VENSSKTIEGSQQVETDVSPFSPYSYRSDTYR* 1554
P+ +K + S +V F E+ ML S ++ +E ++V V + +
Sbjct: 608 PETKKVVISRNVVFHESIMLHDKPS-----TNVPVESQEKVSVQVEHLISSGHAPEK--- 659
Query: 1553 SK*GSSARVNCNE*T*EEC*ETRMVGNKYGGRCTPYHFICKHG*YDNS*WTDDDTENEAP 1374
+N + E+ +D ++P
Sbjct: 660 ----EDVAINQDAPVIED--------------------------------SDSSIVQQSP 683
Query: 1373 VQESIATSRPKRNVRNPGWLVTD--MVAYALPIISK----DVPSTYKEAMQSSEFTIWDR 1212
+ SIA RPKRN + P + + +VAYAL + + PSTY +A+ S + W
Sbjct: 684 -KRSIAKDRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAIVSDDCNRWIT 742
Query: 1211 AMYEEMQSLHKNET*ELSKLPKGKKAIGCMWVYTKKEGFS-GEDVRFKARLVAKGYAQKK 1035
AM++EM+SL KN + EL KLPK KK I C W++ +KEG S ++ R+KARLVAKGY+Q
Sbjct: 743 AMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIP 802
Query: 1034 RIDYNEVFSPIVKHSSIRTLLAFVAQFDLKL 942
ID+N+VFSP+VKHSSIRTLL+ VA D +L
Sbjct: 803 GIDFNDVFSPVVKHSSIRTLLSIVAMHDYEL 833
Score = 196 bits (499), Expect(4) = e-151
Identities = 109/277 (39%), Positives = 157/277 (56%), Gaps = 6/277 (2%)
Frame = -1
Query: 2929 EWLLNSTATYHVCTKRECFFSYEKLDTGVVLMGNDNPCRTVEIGTIRFKLHDEMIMELTE 2750
+W+L++ TYH+C R+ F +YE + G VLMG+D PC IGT++ K+ D I L +
Sbjct: 208 QWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLD 267
Query: 2749 VRHIPDMTHNLISLGMLESKGFKVILEDGVSKVLHGALVIIARRSCEKLILFEG*CSSR* 2570
VRHIP++ +LISL L+ KG+K DG+ KV G+LV++ + + L+ ++
Sbjct: 268 VRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVM-KADIKYANLYHLRGTTIL 326
Query: 2569 XXXXXXXXXXXY*DMAYALGACK*KVSICGEIGTAERCY-----DLQVG-LNFCEHCVLG 2408
D A ++ EIG AE +G L FCEHC+ G
Sbjct: 327 GNVAAVSDSLSNSD---ATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFG 383
Query: 2407 KQTRVKFSTAIHRTRGTLDYVHSYVWGPSKAVSLGGKDWFVSFVDDFSRRVWVYTIRNKD 2228
K RVKF+T+ H T G LDYVHS +WGP++ S GG + ++ VDD+SR+VW Y +++K
Sbjct: 384 KHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKY 443
Query: 2227 EVLKVFIRWKKLIETQTGRKIKRLRLDNGGEYKSGSF 2117
+ VF WK ++E QT RK+K LR DNG E S F
Sbjct: 444 QAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIF 480
Score = 115 bits (287), Expect(4) = e-151
Identities = 50/79 (63%), Positives = 64/79 (81%)
Frame = -2
Query: 948 EISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR*WYKRFDW 769
E+ +D+KTAFLHG+L+E IYM QP F V GKE+ VC+L+KSLYGLKQSPR WYKRFD
Sbjct: 832 ELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDS 891
Query: 768 FMIGQKYTKSHHDHCVYFR 712
FM+ QK+ +S++D CVY +
Sbjct: 892 FMLSQKFRRSNYDSCVYLK 910
Score = 32.7 bits (73), Expect(4) = e-151
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -2
Query: 3171 KDRQKPGGKGKAHSKSTGNSLAHDECAFCHRSGH*KKECPKIKRKNNDTK 3022
K R K + SKS G + C +C R GH EC K++ K+ T+
Sbjct: 123 KSRDKSSSIYRGRSKSRGR---YKSCKYCKRDGHDISECWKLQDKDKRTR 169
Score = 141 bits (355), Expect(2) = 8e-61
Identities = 69/117 (58%), Positives = 89/117 (76%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*KDKVSQHC 172
L+YAMVC+RPDLS +S+VSRYM + KEHW+AV+WI +YL GT L F + S
Sbjct: 1032 LMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQF--GRSSDGL 1089
Query: 171 VGYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
VGYVDSD+AGDLD+RR TG+VFT+ G VSW+ +LQ+ + +STTEAEYMA++EA K
Sbjct: 1090 VGYVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQATVALSTTEAEYMAISEACK 1146
Score = 123 bits (309), Expect(2) = 8e-61
Identities = 69/136 (50%), Positives = 96/136 (70%)
Frame = -1
Query: 757 TEVYQKSP*SLCLLSQTIDDSFIYLLLYVDDMLIAARSKSEIDMLKCRLSSKFEMKDLSE 578
++ +++S C+ + +D S IYLLLYVDDMLIAA+ KSEI LK +LSS+FEMKDL
Sbjct: 895 SQKFRRSNYDSCVYLKVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGA 954
Query: 577 AKKILGMKIRRDGVKRRVWLS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSAFMSLST 398
AKKILGM+I R+ +++LS K Y++KVL +F M + K ST LA HF+LS+ + +
Sbjct: 955 AKKILGMEITRERHSGKLYLSQKCYIEKVLHRFNM-HDAKLVSTLLAAHFRLSSDLCPQS 1013
Query: 397 YEERGYMTRVPYASAV 350
+ YM+RVPY+SAV
Sbjct: 1014 AYDIEYMSRVPYSSAV 1029
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 262 bits (670), Expect(4) = e-150
Identities = 168/391 (42%), Positives = 224/391 (57%), Gaps = 7/391 (1%)
Frame = -3
Query: 2093 IIRHFTVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTA 1914
I+RH+TV TP QN VAERMN T++ K RC++SNAG K FW +A++ AC+L+NR PS A
Sbjct: 787 IVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYA 846
Query: 1913 IGGKTHLEVWTGKPAHDYDFLHVFGCPAYFHVKED*LDPRTKKAIFIRFETGVKGYKLWD 1734
I KT +EVW+G PA +Y L VFGC AY HV L+PR K IF+ + +GVKGYKLW
Sbjct: 847 IDKKTPIEVWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWC 905
Query: 1733 PKDRKTIQSSDVTFDEASML--KPNGSQ*VENSSKTIEGSQQVETDVSPFSPYSYRSDTY 1560
P+ +K + S +V F E+ ML KP+ + VE+ K S QVE +S S ++ +
Sbjct: 906 PETKKVVISRNVVFHESVMLHDKPSTNVPVESQEK---ASVQVEHLIS--SGHAPEKE-- 958
Query: 1559 R*SK*GSSARVNCNE*T*EEC*ETRMVGNKYGGRCTPYHFICKHG*YDNS*WTDDDTENE 1380
+N +E E+ N + +P I K D N
Sbjct: 959 -------DVAINQDEPVIED-------SNSSIVQQSPKRSIAK----------DRPKRNI 994
Query: 1379 APVQESIATSRPKRNVRNPGWLVTDMVAYALPIISK----DVPSTYKEAMQSSEFTIWDR 1212
P Q I + ++VAYAL + + PSTY EA+ S + W
Sbjct: 995 KPPQRYIEEA--------------NIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWIT 1040
Query: 1211 AMYEEMQSLHKNET*ELSKLPKGKKAIGCMWVYTKKEGFSGED-VRFKARLVAKGYAQKK 1035
AM++EM+SL KN T EL KLPK KK I C W++ +KEG S D R+KARL+AKGY+Q
Sbjct: 1041 AMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIP 1100
Query: 1034 RIDYNEVFSPIVKHSSIRTLLAFVAQFDLKL 942
ID+N+VFSP+VKHSSIRTLL+ VA D +L
Sbjct: 1101 GIDFNDVFSPVVKHSSIRTLLSIVAMHDYEL 1131
Score = 199 bits (506), Expect(4) = e-150
Identities = 109/277 (39%), Positives = 158/277 (57%), Gaps = 6/277 (2%)
Frame = -1
Query: 2929 EWLLNSTATYHVCTKRECFFSYEKLDTGVVLMGNDNPCRTVEIGTIRFKLHDEMIMELTE 2750
+W+LN+ YH+C R+ F +YE + G VLMG+D PC IGT++ K+ D I L++
Sbjct: 506 QWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSD 565
Query: 2749 VRHIPDMTHNLISLGMLESKGFKVILEDGVSKVLHGALVIIARRSCEKLILFEG*CSSR* 2570
VRHIP++ +LISL L+ KG+K DG+ KV G+LV++ + + L+ ++
Sbjct: 566 VRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVM-KADIKSANLYHLRGTTIL 624
Query: 2569 XXXXXXXXXXXY*DMAYALGACK*KVSICGEIGTAERCY-----DLQVG-LNFCEHCVLG 2408
D A ++ EIG AE +G L FCEHC+ G
Sbjct: 625 GNVAAVSDSLSNSD---ATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFG 681
Query: 2407 KQTRVKFSTAIHRTRGTLDYVHSYVWGPSKAVSLGGKDWFVSFVDDFSRRVWVYTIRNKD 2228
K RVKF+T+ H T G LDYVHS +WGP++ S GG + ++ VDD+SR+VW Y +++K
Sbjct: 682 KHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKY 741
Query: 2227 EVLKVFIRWKKLIETQTGRKIKRLRLDNGGEYKSGSF 2117
+ VF WK ++E QT RK+K LR DNG E+ S F
Sbjct: 742 QAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIF 778
Score = 115 bits (287), Expect(4) = e-150
Identities = 50/79 (63%), Positives = 64/79 (81%)
Frame = -2
Query: 948 EISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR*WYKRFDW 769
E+ +D+KTAFLHG+L+E IYM QP F V GKE+ VC+L+KSLYGLKQSPR WYKRFD
Sbjct: 1130 ELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDS 1189
Query: 768 FMIGQKYTKSHHDHCVYFR 712
FM+ QK+ +S++D CVY +
Sbjct: 1190 FMLSQKFRRSNYDSCVYLK 1208
Score = 30.4 bits (67), Expect(4) = e-150
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 3177 RTKDRQKPGGKGKAHSKSTGNSLAHDECAFCHRSGH*KKECPKIKRKNNDT 3025
+ + R K + SKS G + C +C R GH EC K+ K+ T
Sbjct: 419 KNQSRDKSSSSYRGRSKSRGR---YKSCKYCKRDGHDIFECWKLHDKDKRT 466
Score = 135 bits (341), Expect(2) = 3e-59
Identities = 66/117 (56%), Positives = 87/117 (74%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*KDKVSQHC 172
L+YAMVC+RPDLS +S+VSRYM + KEHW+AV+WI +YL GT L F + +
Sbjct: 1330 LMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSR--DGL 1387
Query: 171 VGYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
VGYVDSD+AGDLD+ R G+VFT+ G VSW+ +LQ+ + +STTEAEYMA++EA K
Sbjct: 1388 VGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACK 1444
Score = 124 bits (310), Expect(2) = 3e-59
Identities = 70/136 (51%), Positives = 97/136 (71%)
Frame = -1
Query: 757 TEVYQKSP*SLCLLSQTIDDSFIYLLLYVDDMLIAARSKSEIDMLKCRLSSKFEMKDLSE 578
++ +++S C+ + +D S IYLLLYVDDMLIAA+ KSEI LK +LSS+FEMKDL
Sbjct: 1193 SQKFRRSNYDSCVYLKVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGA 1252
Query: 577 AKKILGMKIRRDGVKRRVWLS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSAFMSLST 398
AKKILGM+I R +++LS K Y++KVL++F M + K STPLA HF+LS+ + +
Sbjct: 1253 AKKILGMEITRKRHSFKLYLSQKGYIEKVLRRFNM-HDAKPVSTPLAAHFRLSSDLCPQS 1311
Query: 397 YEERGYMTRVPYASAV 350
+ YM+RVPY+SAV
Sbjct: 1312 DYDIEYMSRVPYSSAV 1327
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 247 bits (631), Expect(4) = e-148
Identities = 154/400 (38%), Positives = 213/400 (53%), Gaps = 16/400 (4%)
Frame = -3
Query: 2093 IIRHFTVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTA 1914
I+RH T+ TP QN VAERMN T++ + RCM+S+A K FW +A + AC+L+NR PS
Sbjct: 572 IVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIP 631
Query: 1913 IGGKTHLEVWTGKPAHDYDFLHVFGCPAYFHVKED*LDPRTKKAIFIRFETGVKGYKLWD 1734
+ KT +EVW+G PA DY L VFGC AY HV L+PR K +F+ + +GVKGYKLW+
Sbjct: 632 LNKKTPIEVWSGTPA-DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWN 690
Query: 1733 PKDRKTIQSSDVTFDEASMLKPNGSQ*VENSSKTIEGSQQVETDVSPFSPYSYRSDTYR* 1554
P+ KT S V F+E+ M + ++ E ++ D Y
Sbjct: 691 PETGKTFMSRSVVFNESVMF-----------TNSLPSEHVPEKELQRMHMQVEHVDDYT- 738
Query: 1553 SK*GSSARVNCNE*T*EEC*ETRMVGNKYGGRCTPYHFICKHG*YDNS*WTDDDTENEA- 1377
G + P H H N+ DDD ++
Sbjct: 739 -----------------------------GVQVEPVHEQDDH----NNDVADDDAHDDVQ 765
Query: 1376 ---PVQE-----SIATSRPKRNVRNPGWLVTD--MVAYAL----PIISKDVPSTYKEAMQ 1239
P+ + IA + KR + P L+ + + YAL + + P+TYKEA++
Sbjct: 766 QTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVR 825
Query: 1238 SSEFTIWDRAMYEEMQSLHKNET*ELSKLPKGKKAIGCMWVYTKKEGF-SGEDVRFKARL 1062
+ W AM+EEMQSL KN T E+ LPK KK I C W++ +KEG S E ++KARL
Sbjct: 826 CGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARL 885
Query: 1061 VAKGYAQKKRIDYNEVFSPIVKHSSIRTLLAFVAQFDLKL 942
VA+GY+Q +DYN+VFSP+VKHSSIRT L+ VA DL+L
Sbjct: 886 VARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLEL 925
Score = 211 bits (537), Expect(4) = e-148
Identities = 116/283 (40%), Positives = 166/283 (58%), Gaps = 8/283 (2%)
Frame = -1
Query: 2941 SGQSEWLLNSTATYHVCTKRECFFSYEKLDTG-VVLMGNDNPCRTVEIGTIRFKLHDEMI 2765
+G EW+L+S ++H+CTKR F SY+ + G VV MG+DNPC V IG+++ K D M
Sbjct: 285 AGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMT 344
Query: 2764 MELTEVRHIPDMTHNLISLGMLESKGFKVILEDGVSKVLHGALVII-ARRSCEKLILFEG 2588
L VR+IP M+ NLISL L+++G+K DGV KV G+LV + + KL + G
Sbjct: 345 RTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRG 404
Query: 2587 *CSSR*XXXXXXXXXXXY*DMAYALGACK*KVSICGEIGTAERCY-DLQVG-----LNFC 2426
C+ D ++ +G E +L G + FC
Sbjct: 405 -CT---LTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFC 460
Query: 2425 EHCVLGKQTRVKFSTAIHRTRGTLDYVHSYVWGPSKAVSLGGKDWFVSFVDDFSRRVWVY 2246
EHC+ GK RV+F+T++H T+GTLDYVH+ +WGPSK SLGG + ++ +DD+SR+VW Y
Sbjct: 461 EHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPY 520
Query: 2245 TIRNKDEVLKVFIRWKKLIETQTGRKIKRLRLDNGGEYKSGSF 2117
+++KD+ F WK +IE QT RK+K LR DNGGE+ S +F
Sbjct: 521 FLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAF 563
Score = 109 bits (273), Expect(4) = e-148
Identities = 49/79 (62%), Positives = 60/79 (75%)
Frame = -2
Query: 948 EISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR*WYKRFDW 769
E+ LD+KTAFLHG+L+E IYM QP F V GKE YVCKL++SLYGLKQSPR W KRFD
Sbjct: 924 ELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDS 983
Query: 768 FMIGQKYTKSHHDHCVYFR 712
FM+ + +S +D CVY +
Sbjct: 984 FMLSHSFKRSKYDSCVYIK 1002
Score = 30.4 bits (67), Expect(4) = e-148
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -2
Query: 3183 QERTKDRQKPGGKGKAHSKSTGNSLAHDECAFCHRSGH*KKECPKIKRKNNDTK 3022
+ RT + + +G++ SK GN C +C H EC K++ K K
Sbjct: 206 ENRTSNEKNYDRRGRSKSKPPGNKKF---CVYCKLKNHNIDECKKVQAKERKNK 256
Score = 139 bits (349), Expect(2) = 6e-61
Identities = 68/117 (58%), Positives = 86/117 (73%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*KDKVSQHC 172
L+YAMVC+RPDLS +S+VSRYM + KEHW+ V+WI +YL GT L F + +
Sbjct: 1124 LMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCLKF--GRTDKGL 1181
Query: 171 VGYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
+GYVDSDYA DLD+RR TG+VFT+ VSWR TLQS++ +STTEAEYMA+ EA K
Sbjct: 1182 IGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACK 1238
Score = 126 bits (316), Expect(2) = 6e-61
Identities = 74/133 (55%), Positives = 93/133 (69%)
Frame = -1
Query: 748 YQKSP*SLCLLSQTIDDSFIYLLLYVDDMLIAARSKSEIDMLKCRLSSKFEMKDLSEAKK 569
+++S C+ + ++ S IYLLLYVDDMLIAA+SK EI LK LSS+F+MKDL AKK
Sbjct: 990 FKRSKYDSCVYIKHVNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKK 1049
Query: 568 ILGMKIRRDGVKRRVWLS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSAFMSLSTYEE 389
IL M+I RD ++LS Y++KVLQ+F M N K STP+APHFKLSA ST E
Sbjct: 1050 ILVMEISRDRKSGLLFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSTDAE 1108
Query: 388 RGYMTRVPYASAV 350
YM+RVPY+SAV
Sbjct: 1109 IEYMSRVPYSSAV 1121
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 246 bits (628), Expect(4) = e-147
Identities = 153/400 (38%), Positives = 214/400 (53%), Gaps = 16/400 (4%)
Frame = -3
Query: 2093 IIRHFTVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTA 1914
I+RH T+ TP QN VAERMN T++ + RCM+S+A K FW +A + AC+L+NR PS
Sbjct: 572 IVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIP 631
Query: 1913 IGGKTHLEVWTGKPAHDYDFLHVFGCPAYFHVKED*LDPRTKKAIFIRFETGVKGYKLWD 1734
+ KT +EVW+G PA DY L VFGC AY HV L+PR K +F+ + +GVKGYKLW+
Sbjct: 632 LNKKTPIEVWSGTPA-DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWN 690
Query: 1733 PKDRKTIQSSDVTFDEASMLKPNGSQ*VENSSKTIEGSQQVETDVSPFSPYSYRSDTYR* 1554
P+ KT S V F+E+ M + ++ E ++
Sbjct: 691 PETGKTFMSRSVVFNESVMF-----------TNSLPSEHVPEKELQRMHM---------- 729
Query: 1553 SK*GSSARVNCNE*T*EEC*ETRMVGNKYGGRCTPYHFICKHG*YDNS*WTDDDTENEA- 1377
+ V + G + P H H N+ DDD ++
Sbjct: 730 --------------------QVEHVDDDTGVQVEPVHEQDDH----NNDVADDDAHDDVQ 765
Query: 1376 ---PVQE-----SIATSRPKRNVRNPGWLVTD--MVAYAL----PIISKDVPSTYKEAMQ 1239
P+ + IA + KR + P L+ + + YAL + + P+TYKEA++
Sbjct: 766 QTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVR 825
Query: 1238 SSEFTIWDRAMYEEMQSLHKNET*ELSKLPKGKKAIGCMWVYTKKEGF-SGEDVRFKARL 1062
+ W AM+EEMQSL KN T E+ LPK KK I C W++ +KEG S E ++KARL
Sbjct: 826 CGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARL 885
Query: 1061 VAKGYAQKKRIDYNEVFSPIVKHSSIRTLLAFVAQFDLKL 942
VA+GY+Q +DYN+VFSP+VKHSSIRT L+ VA DL+L
Sbjct: 886 VARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLEL 925
Score = 211 bits (536), Expect(4) = e-147
Identities = 116/283 (40%), Positives = 166/283 (58%), Gaps = 8/283 (2%)
Frame = -1
Query: 2941 SGQSEWLLNSTATYHVCTKRECFFSYEKLDTG-VVLMGNDNPCRTVEIGTIRFKLHDEMI 2765
+G EW+L+S ++H+CTKR F SY+ + G VV MG+DNPC V IG+++ K D M
Sbjct: 285 AGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMT 344
Query: 2764 MELTEVRHIPDMTHNLISLGMLESKGFKVILEDGVSKVLHGALVIIARR-SCEKLILFEG 2588
L VR+IP M+ NLISL L+++G+K DGV KV G+LV + + KL + G
Sbjct: 345 RTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRG 404
Query: 2587 *CSSR*XXXXXXXXXXXY*DMAYALGACK*KVSICGEIGTAERCY-DLQVG-----LNFC 2426
C+ D ++ +G E +L G + FC
Sbjct: 405 -CT---LTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFC 460
Query: 2425 EHCVLGKQTRVKFSTAIHRTRGTLDYVHSYVWGPSKAVSLGGKDWFVSFVDDFSRRVWVY 2246
EHC+ GK RV+F+T++H T+GTLDYVH+ +WGPSK SLGG + ++ +DD+SR+VW Y
Sbjct: 461 EHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPY 520
Query: 2245 TIRNKDEVLKVFIRWKKLIETQTGRKIKRLRLDNGGEYKSGSF 2117
+++KD+ F WK +IE QT RK+K LR DNGGE+ S +F
Sbjct: 521 FLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAF 563
Score = 109 bits (273), Expect(4) = e-147
Identities = 49/79 (62%), Positives = 60/79 (75%)
Frame = -2
Query: 948 EISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR*WYKRFDW 769
E+ LD+KTAFLHG+L+E IYM QP F V GKE YVCKL++SLYGLKQSPR W KRFD
Sbjct: 924 ELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDS 983
Query: 768 FMIGQKYTKSHHDHCVYFR 712
FM+ + +S +D CVY +
Sbjct: 984 FMLSHSFKRSKYDSCVYIK 1002
Score = 30.4 bits (67), Expect(4) = e-147
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -2
Query: 3183 QERTKDRQKPGGKGKAHSKSTGNSLAHDECAFCHRSGH*KKECPKIKRKNNDTK 3022
+ RT + + +G++ SK GN C +C H EC K++ K K
Sbjct: 206 ENRTSNEKNYDRRGRSKSKPPGNKKF---CVYCKLKNHNIDECKKVQAKERKNK 256
Score = 140 bits (353), Expect(2) = 1e-61
Identities = 69/117 (58%), Positives = 87/117 (74%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*KDKVSQHC 172
L+YAMVC+RPDLS +S+VSRYM + KEHW+AV+WI +YL GT L F + +
Sbjct: 1124 LMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKF--GRTDKGL 1181
Query: 171 VGYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
+GYVDSDYA DLD+RR TG+VFT+ VSWR TLQS++ +STTEAEYMA+ EA K
Sbjct: 1182 IGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACK 1238
Score = 127 bits (319), Expect(2) = 1e-61
Identities = 74/133 (55%), Positives = 93/133 (69%)
Frame = -1
Query: 748 YQKSP*SLCLLSQTIDDSFIYLLLYVDDMLIAARSKSEIDMLKCRLSSKFEMKDLSEAKK 569
+++S C+ + ++ S IYLLLYVDDMLIAA+SK EI LK LSS+F+MKDL AKK
Sbjct: 990 FKRSKYDSCVYIKHVNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKK 1049
Query: 568 ILGMKIRRDGVKRRVWLS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSAFMSLSTYEE 389
ILGM+I RD ++LS Y++KVLQ+F M N K STP+APHFKLSA S E
Sbjct: 1050 ILGMEISRDRKSGLLFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSIDAE 1108
Query: 388 RGYMTRVPYASAV 350
YM+RVPY+SAV
Sbjct: 1109 IEYMSRVPYSSAV 1121
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 246 bits (628), Expect(4) = e-147
Identities = 153/400 (38%), Positives = 214/400 (53%), Gaps = 16/400 (4%)
Frame = -3
Query: 2093 IIRHFTVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTA 1914
I+RH T+ TP QN VAERMN T++ + RCM+S+A K FW +A + AC+L+NR PS
Sbjct: 572 IVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIP 631
Query: 1913 IGGKTHLEVWTGKPAHDYDFLHVFGCPAYFHVKED*LDPRTKKAIFIRFETGVKGYKLWD 1734
+ KT +EVW+G PA DY L VFGC AY HV L+PR K +F+ + +GVKGYKLW+
Sbjct: 632 LNKKTPIEVWSGMPA-DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWN 690
Query: 1733 PKDRKTIQSSDVTFDEASMLKPNGSQ*VENSSKTIEGSQQVETDVSPFSPYSYRSDTYR* 1554
P+ KT S V F+E+ M + ++ E ++
Sbjct: 691 PETGKTFMSRSVVFNESVMF-----------TNSLPSEHVPEKELQRMHM---------- 729
Query: 1553 SK*GSSARVNCNE*T*EEC*ETRMVGNKYGGRCTPYHFICKHG*YDNS*WTDDDTENEA- 1377
+ V + G + P H H N+ DDD ++
Sbjct: 730 --------------------QVEHVDDDTGVQVEPVHEQDDH----NNDVADDDAHDDVQ 765
Query: 1376 ---PVQE-----SIATSRPKRNVRNPGWLVTD--MVAYAL----PIISKDVPSTYKEAMQ 1239
P+ + IA + KR + P L+ + + YAL + + P+TYKEA++
Sbjct: 766 QTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVR 825
Query: 1238 SSEFTIWDRAMYEEMQSLHKNET*ELSKLPKGKKAIGCMWVYTKKEGF-SGEDVRFKARL 1062
+ W AM+EEMQSL KN T E+ LPK KK I C W++ +KEG S E ++KARL
Sbjct: 826 CGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARL 885
Query: 1061 VAKGYAQKKRIDYNEVFSPIVKHSSIRTLLAFVAQFDLKL 942
VA+GY+Q +DYN+VFSP+VKHSSIRT L+ VA DL+L
Sbjct: 886 VARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLEL 925
Score = 211 bits (536), Expect(4) = e-147
Identities = 116/283 (40%), Positives = 166/283 (58%), Gaps = 8/283 (2%)
Frame = -1
Query: 2941 SGQSEWLLNSTATYHVCTKRECFFSYEKLDTG-VVLMGNDNPCRTVEIGTIRFKLHDEMI 2765
+G EW+L+S ++H+CTKR F SY+ + G VV MG+DNPC V IG+++ K D M
Sbjct: 285 AGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMT 344
Query: 2764 MELTEVRHIPDMTHNLISLGMLESKGFKVILEDGVSKVLHGALVII-ARRSCEKLILFEG 2588
L VR+IP M+ NLISL L+++G+K DGV KV G+LV + + KL + G
Sbjct: 345 RTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRG 404
Query: 2587 *CSSR*XXXXXXXXXXXY*DMAYALGACK*KVSICGEIGTAERCY-DLQVG-----LNFC 2426
C+ D ++ +G E +L G + FC
Sbjct: 405 -CT---LTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFC 460
Query: 2425 EHCVLGKQTRVKFSTAIHRTRGTLDYVHSYVWGPSKAVSLGGKDWFVSFVDDFSRRVWVY 2246
EHC+ GK RV+F+T++H T+GTLDYVH+ +WGPSK SLGG + ++ +DD+SR+VW Y
Sbjct: 461 EHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWPY 520
Query: 2245 TIRNKDEVLKVFIRWKKLIETQTGRKIKRLRLDNGGEYKSGSF 2117
+++KD+ F WK +IE QT RK+K LR DNGGE+ S +F
Sbjct: 521 FLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAF 563
Score = 109 bits (273), Expect(4) = e-147
Identities = 49/79 (62%), Positives = 60/79 (75%)
Frame = -2
Query: 948 EISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR*WYKRFDW 769
E+ LD+KTAFLHG+L+E IYM QP F V GKE YVCKL++SLYGLKQSPR W KRFD
Sbjct: 924 ELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDS 983
Query: 768 FMIGQKYTKSHHDHCVYFR 712
FM+ + +S +D CVY +
Sbjct: 984 FMLSHSFKRSKYDSCVYIK 1002
Score = 30.4 bits (67), Expect(4) = e-147
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -2
Query: 3183 QERTKDRQKPGGKGKAHSKSTGNSLAHDECAFCHRSGH*KKECPKIKRKNNDTK 3022
+ RT + + +G++ SK GN C +C H EC K++ K K
Sbjct: 206 ENRTSNEKNYDRRGRSKSKPPGNKKF---CVYCKLKNHNIDECKKVQAKERKNK 256
Score = 140 bits (353), Expect(2) = 1e-61
Identities = 69/117 (58%), Positives = 87/117 (74%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*KDKVSQHC 172
L+YAMVC+RPDLS +S+VSRYM + KEHW+AV+WI +YL GT L F + +
Sbjct: 1124 LMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKF--GRTDKGL 1181
Query: 171 VGYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
+GYVDSDYA DLD+RR TG+VFT+ VSWR TLQS++ +STTEAEYMA+ EA K
Sbjct: 1182 IGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACK 1238
Score = 127 bits (319), Expect(2) = 1e-61
Identities = 74/133 (55%), Positives = 93/133 (69%)
Frame = -1
Query: 748 YQKSP*SLCLLSQTIDDSFIYLLLYVDDMLIAARSKSEIDMLKCRLSSKFEMKDLSEAKK 569
+++S C+ + ++ S IYLLLYVDDMLIAA+SK EI LK LSS+F+MKDL AKK
Sbjct: 990 FKRSKYDSCVYIKHVNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKK 1049
Query: 568 ILGMKIRRDGVKRRVWLS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSAFMSLSTYEE 389
ILGM+I RD ++LS Y++KVLQ+F M N K STP+APHFKLSA S E
Sbjct: 1050 ILGMEISRDRKSGLLFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSIDAE 1108
Query: 388 RGYMTRVPYASAV 350
YM+RVPY+SAV
Sbjct: 1109 IEYMSRVPYSSAV 1121
>emb|CAN65504.1| hypothetical protein VITISV_028342 [Vitis vinifera]
Length = 1252
Score = 168 bits (425), Expect(5) = e-128
Identities = 127/382 (33%), Positives = 180/382 (47%), Gaps = 3/382 (0%)
Frame = -3
Query: 2078 TVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTAIGGKT 1899
T+ TP QN VAERMN TL + R M +AG K+FW A++ A +L+NR PS + +
Sbjct: 336 TIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKNFWADAISTAAYLINRGPSIPMEFRL 395
Query: 1898 HLEVWTGKPAHDYDFLHVFGCPAYFHVKED---*LDPRTKKAIFIRFETGVKGYKLWDPK 1728
EVW+GK + L VFGC +Y H+ D LD ++K FI + GY+ WD +
Sbjct: 396 PEEVWSGKEM-KFSHLKVFGCVSYVHIDSDARSKLDAKSKICFFIGYGDEKFGYRFWDEQ 454
Query: 1727 DRKTIQSSDVTFDEASMLKPNGSQ*VENSSKTIEGSQQVETDVSPFSPYSYRSDTYR*SK 1548
+RK I+S +V F+E M K + S + +++ S F +++ K
Sbjct: 455 NRKIIRSRNVIFNEQVMYK--------DRSTVVSDVTEIDQKKSEFVKLDELTES-TVQK 505
Query: 1547 *GSSARVNCNE*T*EEC*ETRMVGNKYGGRCTPYHFICKHG*YDNS*WTDDDTENEAPVQ 1368
G + N N + P+
Sbjct: 506 GGKEDKENVN----------------------------------------SQVDLSTPIA 525
Query: 1367 ESIATSRPKRNVRNPGWLVTDMVAYALPIISKDVPSTYKEAMQSSEFTIWDRAMYEEMQS 1188
E R RN+R P + + Y L + P Y EA+Q + W+ M +EM S
Sbjct: 526 E---VRRSSRNIRPPK-RYSPGLNYLL-LTDGGEPECYDEALQDENSSKWELTMKDEMDS 580
Query: 1187 LHKNET*ELSKLPKGKKAIGCMWVYTKKEGFSGEDVRFKARLVAKGYAQKKRIDYNEVFS 1008
L N+T EL +LP GKKA+ WVY K G R+KARLV KG+ QK+ IDY E+FS
Sbjct: 581 LLGNQTWELIELPVGKKALHNKWVYRIKNEHDGSK-RYKARLVVKGFQQKEGIDYTEIFS 639
Query: 1007 PIVKHSSIRTLLAFVAQFDLKL 942
P+VK S+IR +L VA +L L
Sbjct: 640 PVVKMSTIRLVLGMVAAENLHL 661
Score = 133 bits (334), Expect(5) = e-128
Identities = 65/117 (55%), Positives = 83/117 (70%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*KDKVSQHC 172
L+YAMVCTRPD++ V +VSR+M K+HW+AVKWIL+YL G++D L F S
Sbjct: 860 LMYAMVCTRPDIAHAVGIVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCF--TGASLKL 917
Query: 171 VGYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
GYVD+D+AGD+D R+ TTG VFTL G +SW LQ I+ +STTEAEY+ TEA K
Sbjct: 918 QGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVVATEAGK 974
Score = 106 bits (265), Expect(5) = e-128
Identities = 62/125 (49%), Positives = 80/125 (64%)
Frame = -1
Query: 724 CLLSQTIDDSFIYLLLYVDDMLIAARSKSEIDMLKCRLSSKFEMKDLSEAKKILGMKIRR 545
C ++ D+S+I LLLYVDDMLI +I+ LK +LS +F MKDL AK+ILGM+I R
Sbjct: 734 CCYVKSFDNSYIILLLYVDDMLIVGSDIEKINNLKKQLSKQFAMKDLGVAKQILGMRIIR 793
Query: 544 DGVKRRVWLS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSAFMSLSTYEERGYMTRVP 365
D + LS Y++KVL +F M K STPL HFKLS S T EE +M++VP
Sbjct: 794 DKANGTLKLSQSEYVKKVLSKFNM-NEAKPMSTPLGSHFKLSKEQSSKTDEEGDHMSKVP 852
Query: 364 YASAV 350
YASA+
Sbjct: 853 YASAI 857
Score = 99.8 bits (247), Expect(5) = e-128
Identities = 45/78 (57%), Positives = 56/78 (71%)
Frame = -2
Query: 945 ISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR*WYKRFDWF 766
+ LD+KT FLHGDL+E +YM QP F V G+E+ VCKLRKSLYGLKQ+PR WYK+FD F
Sbjct: 661 LEQLDVKTTFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNF 720
Query: 765 MIGQKYTKSHHDHCVYFR 712
M + + DHC Y +
Sbjct: 721 MHRIGFKRCEADHCCYVK 738
Score = 45.1 bits (105), Expect(5) = e-128
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = -1
Query: 2206 RWKKLIETQTGRKIKRLRLDNGGEYKSGSF 2117
+WK ++ET+TG KIK LR DNGGEY G F
Sbjct: 293 KWKAMVETETGLKIKCLRSDNGGEYIDGRF 322
Score = 149 bits (375), Expect = 2e-32
Identities = 94/281 (33%), Positives = 141/281 (50%), Gaps = 11/281 (3%)
Frame = -1
Query: 2926 WL---LNSTATYHVCTKRECFFSYEKLDTGVVLMGNDNPCRTVEIGTIRFKLHDEMIMEL 2756
WL L+ A++H RE +Y D G V + + + V +G +R L + + L
Sbjct: 978 WLHGFLDELASFHTTPHREIIQNYVAGDFGKVYLADGSVLDVVGLGDVRISLPNGSVWLL 1037
Query: 2755 TEVRHIPDMTHNLISLGMLESKGFKVILEDGVSKVLHGALVIIARRSCEKLILFEG*CSS 2576
+VRHIPD+ NLIS+G L+ +G ++ G KV GA V+ + L +
Sbjct: 1038 EKVRHIPDLRRNLISIGQLDDEGHAILFIGGTWKVTKGARVLARGKKTGTLYMTS----- 1092
Query: 2575 R*XXXXXXXXXXXY*DMAYALGACK*KVSICGEIG-----TAERCYDLQ-VGLNFCEHCV 2414
D + K+ E G + + +L+ + + CE C+
Sbjct: 1093 ------CPRDTIAVADASTDTSLWHHKLGHMSEKGMKMLLSKGKLPELKSIDFDMCESCI 1146
Query: 2413 LGKQTRVKFSTAIHRTRGT--LDYVHSYVWGPSKAVSLGGKDWFVSFVDDFSRRVWVYTI 2240
LGKQ V F I RT L+ VH +WGPS SLGG ++++F+DD SR+VWVY +
Sbjct: 1147 LGKQKNVSF-LKIGRTLKAEKLELVHIDLWGPSPVASLGGSRYYITFIDDSSRKVWVYFL 1205
Query: 2239 RNKDEVLKVFIRWKKLIETQTGRKIKRLRLDNGGEYKSGSF 2117
+NK +V + F +WK ++E +TG K+K LR DNGGEY G F
Sbjct: 1206 KNKSDVFETFKKWKAMVEKETGLKVKCLRSDNGGEYIDGEF 1246
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 145 bits (366), Expect(4) = e-124
Identities = 80/161 (49%), Positives = 108/161 (67%), Gaps = 7/161 (4%)
Frame = -3
Query: 1403 TDDDTENEAPVQESIATSRPKRNVRNPGWLVTD--MVAYALPIISK----DVPSTYKEAM 1242
+D +++P + SIA +PKRN++ P + + +VAYAL + K PSTY EA+
Sbjct: 737 SDSSIVHQSP-KRSIAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAI 795
Query: 1241 QSSEFTIWDRAMYEEMQSLHKNET*ELSKLPKGKKAIGCMWVYTKKEGFS-GEDVRFKAR 1065
S + W AM++EM+SL KN T EL KLPK KK I C W++ +KEG S ++ R+KAR
Sbjct: 796 VSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKAR 855
Query: 1064 LVAKGYAQKKRIDYNEVFSPIVKHSSIRTLLAFVAQFDLKL 942
LVAKGY+Q ID+N+VFSP+VKHSSIRTLL VA D +L
Sbjct: 856 LVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLGIVAMHDYEL 896
Score = 137 bits (346), Expect(4) = e-124
Identities = 67/117 (57%), Positives = 87/117 (74%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*KDKVSQHC 172
L+YAMVC RPDLS +S+V+RYM + KEHW+AV+WI +YL GT L F ++
Sbjct: 1095 LMYAMVCCRPDLSHALSVVNRYMANPGKEHWKAVQWIFRYLRGTSSACLQF--ERSRDGL 1152
Query: 171 VGYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
VGYVDSD+AGDLD+RR TG+VFT+ G VSW+ +LQ+ + +STTEAEYMA+ EA K
Sbjct: 1153 VGYVDSDFAGDLDRRRSITGYVFTIGGCAVSWKASLQATVALSTTEAEYMAIFEACK 1209
Score = 125 bits (315), Expect(4) = e-124
Identities = 72/126 (57%), Positives = 94/126 (74%), Gaps = 1/126 (0%)
Frame = -1
Query: 724 CLLSQTIDDSFIYLLLYVDDMLIAARSKSEIDMLKCRLSSKFEMKDLSEAKKILGMKIRR 545
C+ + +D S IYLLLYVDDMLIAA+ KSEI+ LK +LSS+FEMKDL AKKILGM+I R
Sbjct: 969 CVYLKVVDGSVIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITR 1028
Query: 544 DGVKRRVWLS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSA-FMSLSTYEERGYMTRV 368
+ +++LS K Y++KVL++F M + K STPLA HF+LS+ LS Y+ YM+RV
Sbjct: 1029 ERHSGKLYLSQKGYIEKVLRRFNM-HDAKPVSTPLAAHFRLSSDLCPLSDYDIE-YMSRV 1086
Query: 367 PYASAV 350
PY+SAV
Sbjct: 1087 PYSSAV 1092
Score = 111 bits (277), Expect(4) = e-124
Identities = 49/79 (62%), Positives = 63/79 (79%)
Frame = -2
Query: 948 EISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR*WYKRFDW 769
E+ +++KTAFLHG+L+E IYM QP F V GKE+ VC+L+KSLYGLKQSPR WYKRFD
Sbjct: 895 ELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDS 954
Query: 768 FMIGQKYTKSHHDHCVYFR 712
FM+ QK+ S++D CVY +
Sbjct: 955 FMLSQKFRISNYDSCVYLK 973
Score = 157 bits (397), Expect(2) = 3e-74
Identities = 98/268 (36%), Positives = 143/268 (53%), Gaps = 12/268 (4%)
Frame = -1
Query: 2884 RECFFSYEKLDTGVVLMGNDNPCRTVEIGTIRFKLHDEMIMELTEVRHIPDMTHNLISL- 2708
++ F +YE L G VLMG+D PC IGT++ K+ D I L++V+HIP++ +LISL
Sbjct: 299 QDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVQHIPNLKRSLISLY 358
Query: 2707 GMLE-SKGFKVILEDGVSKV----LHGALVIIARRSCEKLILFEG*CSSR*XXXXXXXXX 2543
G+L+ +KG V+++ + L G ++ +F+ +S
Sbjct: 359 GILKVTKGSLVVMKVDIKSANLYHLRGTTIL-----GNVAAVFDSLSNSD---------- 403
Query: 2542 XXY*DMAYALGACK*KVSICGEIGTAERCY-DLQVG-----LNFCEHCVLGKQTRVKFST 2381
A ++ EIG AE L G L FCEHC+ GK RVKF+T
Sbjct: 404 --------ATNLWHMRLGHMSEIGLAELSKRGLLDGQSIRKLKFCEHCIFGKHKRVKFNT 455
Query: 2380 AIHRTRGTLDYVHSYVWGPSKAVSLGGKDWFVSFVDDFSRRVWVYTIRNKDEVLKVFIRW 2201
+ H T G LDYVHS +WGP+ S GG + ++ VDD+SR+VW Y +++K + F W
Sbjct: 456 STHTTEGILDYVHSDLWGPAHKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEW 515
Query: 2200 KKLIETQTGRKIKRLRLDNGGEYKSGSF 2117
K ++E QT RK+K LR DNG E+ S F
Sbjct: 516 KTMVERQTERKVKILRTDNGMEFCSKIF 543
Score = 152 bits (383), Expect(2) = 3e-74
Identities = 82/168 (48%), Positives = 110/168 (65%), Gaps = 2/168 (1%)
Frame = -3
Query: 2093 IIRHFTVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTA 1914
I+ H+T TP QN+VAERMN T++ K RCM+SNAG K FW +A++ AC+L+NR P A
Sbjct: 552 IVCHYTAPHTPQQNDVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYA 611
Query: 1913 IGGKTHLEVWTGKPAHDYDFLHVFGCPAYFHVKED*LDPRTKKAIFIRFETGVKGYKLWD 1734
I KT +EVW+G P +Y L VFGC AY HV L+PR K IF+ + +GVKGYKLW
Sbjct: 612 IDKKTPIEVWSGSPT-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWC 670
Query: 1733 PKDRKTIQSSDVTFDEASML--KPNGSQ*VENSSKTIEGSQQVETDVS 1596
P+ +K + S +V F E+ +L KP+ + VE+ K S QVE +S
Sbjct: 671 PETKKVVISRNVVFHESVILHDKPSTNVPVESQEK---ASVQVEHLIS 715
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 135 bits (340), Expect(4) = e-113
Identities = 67/117 (57%), Positives = 88/117 (75%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*KDKVSQHC 172
L++AM+CTRPD++Q V +VSRYM + EHW AVK IL+Y+ GT DV L + + +
Sbjct: 1099 LMFAMICTRPDIAQAVGVVSRYMANPGGEHWIAVKRILRYIRGTSDVALCYGGSEFTVR- 1157
Query: 171 VGYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
GYVDSD+AGDLDKR+ TTG+VFTL+G VSW LQ+++ +STTEAEYMA T+A K
Sbjct: 1158 -GYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACK 1213
Score = 128 bits (321), Expect(4) = e-113
Identities = 73/163 (44%), Positives = 102/163 (62%), Gaps = 4/163 (2%)
Frame = -3
Query: 1418 DNS*WTDDDTENEAPVQESIATSRPKRNVRNPGW---LVTDM-VAYALPIISKDVPSTYK 1251
D+S + E E E+ R R R P W VT++ VAY L + PST+
Sbjct: 738 DSSEAAPEHEEQEPVESEAPEVRRSTRERRPPTWHSEYVTEINVAYCL-LTEDGEPSTFH 796
Query: 1250 EAMQSSEFTIWDRAMYEEMQSLHKNET*ELSKLPKGKKAIGCMWVYTKKEGFSGEDVRFK 1071
EA+ SS+ +W AM EE+++LHKN+T EL LP+G+KAIG WVY K + + R++
Sbjct: 797 EALNSSDVALWMTAMQEEIEALHKNKTWELVPLPRGRKAIGNKWVYKIKRDGNDQVERYR 856
Query: 1070 ARLVAKGYAQKKRIDYNEVFSPIVKHSSIRTLLAFVAQFDLKL 942
ARLV KGYAQK+ ID+NE+FSP+V+ +++R +LA A FDL L
Sbjct: 857 ARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHL 899
Score = 114 bits (284), Expect(4) = e-113
Identities = 64/118 (54%), Positives = 81/118 (68%)
Frame = -1
Query: 703 DDSFIYLLLYVDDMLIAARSKSEIDMLKCRLSSKFEMKDLSEAKKILGMKIRRDGVKRRV 524
D+ FI LLLYVDDML+A +K I LK +L+ +FEMKDL A KILGM+I RD ++
Sbjct: 980 DNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNMKI 1039
Query: 523 WLS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSAFMSLSTYEERGYMTRVPYASAV 350
WLS K YL+K+L++F M + K ST L +FKLS+ M S ER M+RVPYASAV
Sbjct: 1040 WLSQKNYLKKILRRFNM-QDCKSISTSLPVNFKLSSSMCPSNEAERKEMSRVPYASAV 1096
Score = 105 bits (262), Expect(4) = e-113
Identities = 45/79 (56%), Positives = 59/79 (74%)
Frame = -2
Query: 945 ISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR*WYKRFDWF 766
+ LD+KTAFLHG+L+E+IYM QP F GKE+ VC+L KSLYGLKQ+PR WYKRFD F
Sbjct: 899 LEQLDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRYWYKRFDSF 958
Query: 765 MIGQKYTKSHHDHCVYFRK 709
++ Y + DHC Y+++
Sbjct: 959 IMSLGYNRLSSDHCAYYKR 977
Score = 187 bits (476), Expect(3) = 2e-83
Identities = 107/273 (39%), Positives = 155/273 (56%), Gaps = 2/273 (0%)
Frame = -1
Query: 2926 WLLNSTATYHVCTKRECFFSYEKLDTGVVLMGNDNPCRTVEIGTIRFKLHDEMIMELTEV 2747
WL++S AT+H+ ++RE F +YE + G V MGND+ IGTI+ K+ D I + EV
Sbjct: 292 WLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTIGEV 351
Query: 2746 RHIPDMTHNLISLGMLESKGFKVILEDGVSKVLHGALVII-ARRSCEKLILFEG*CSSR* 2570
RH+ + NL+SLG ++S G+K +E+G+ K++ GALV++ + L + +G
Sbjct: 352 RHVNGLKKNLLSLGQMDSHGYKTHVENGIMKIVKGALVLMKVEKIGANLFMLKGETLQEA 411
Query: 2569 XXXXXXXXXXXY*DMAYALGACK*K-VSICGEIGTAERCYDLQVGLNFCEHCVLGKQTRV 2393
LG + + I E V L FCEHCV KQ R+
Sbjct: 412 DACVASNGEESTMMWHLKLGHMSEQGLKILSERKLLPGLKS--VSLPFCEHCVTSKQHRL 469
Query: 2392 KFSTAIHRTRGTLDYVHSYVWGPSKAVSLGGKDWFVSFVDDFSRRVWVYTIRNKDEVLKV 2213
KFS +I R++ LD +HS VW S +S+GG + V+F+DD+SRR WVY I+ K +V V
Sbjct: 470 KFSRSIARSKCILDLIHSDVW-ESPDISMGGAKYMVTFIDDYSRRCWVYPIKKKSDVFPV 528
Query: 2212 FIRWKKLIETQTGRKIKRLRLDNGGEYKSGSFL 2114
F +K +E ++G+KIK LR DNGGEY G FL
Sbjct: 529 FKEYKAWVELESGKKIKCLRTDNGGEYTDGEFL 561
Score = 143 bits (361), Expect(3) = 2e-83
Identities = 78/159 (49%), Positives = 104/159 (65%), Gaps = 4/159 (2%)
Frame = -3
Query: 2093 IIRHFTVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTA 1914
I R FTV TP QN VAERMN TL ++R M+ AG SFW +A AC++VNR PSTA
Sbjct: 569 IQRQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSPSTA 628
Query: 1913 IGGKTHLEVWTGKPAHDYDFLHVFGCPAY--FHVKE-D*LDPRTKKAIFIRFETGVKGYK 1743
IG KT +E+WTGKPA DY +LH FGCP Y ++ +E LD ++++ IF+ + GVKGY+
Sbjct: 629 IGLKTAMEMWTGKPA-DYSYLHAFGCPMYVMYNAQERTKLDAKSRRCIFLGYADGVKGYR 687
Query: 1742 LWDPKDRKTIQSSDVTFDEASMLKPNGSQ-*VENSSKTI 1629
LWDP K + S DV F E + + +G V+ S+T+
Sbjct: 688 LWDPTAHKIVISRDVIFVEDQLQRKDGDDGTVKEKSETV 726
Score = 30.4 bits (67), Expect(3) = 2e-83
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -2
Query: 3198 EAL-VAQERTKDRQKPGGKGKAHSKSTGNSLAHDECAFCHRSGH*KKECPKIKRKNNDTK 3022
EAL V + R+ +R G + + SK G + +C C + GH KKEC +K + K
Sbjct: 197 EALSVTRGRSTERGPSGSQNQGRSKFRGKK--NVKCYNCGKKGHVKKECWS-NQKRREGK 253
Query: 3021 NP 3016
P
Sbjct: 254 EP 255
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 132 bits (333), Expect(4) = e-113
Identities = 66/117 (56%), Positives = 87/117 (74%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*KDKVSQHC 172
L++AM+CTRPD++Q V VSRYM + EHW AVK IL+Y+ GT +V L + + +
Sbjct: 1099 LMFAMICTRPDIAQAVGAVSRYMANPGGEHWIAVKRILRYIRGTSNVALCYGGSEFTVR- 1157
Query: 171 VGYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
GYVDSD+AGDLDKR+ TTG+VFTL+G VSW LQ+++ +STTEAEYMA T+A K
Sbjct: 1158 -GYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACK 1213
Score = 124 bits (312), Expect(4) = e-113
Identities = 72/163 (44%), Positives = 100/163 (61%), Gaps = 4/163 (2%)
Frame = -3
Query: 1418 DNS*WTDDDTENEAPVQESIATSRPKRNVRNPGW---LVTDM-VAYALPIISKDVPSTYK 1251
D+S + E E E+ R R R P W VT++ VAY L + PST+
Sbjct: 738 DSSEAAPEHEEQEPVESEAPEVRRSTRERRPPTWHSEYVTEINVAYCL-LTEDGEPSTFH 796
Query: 1250 EAMQSSEFTIWDRAMYEEMQSLHKNET*ELSKLPKGKKAIGCMWVYTKKEGFSGEDVRFK 1071
EA+ S + +W AM EE+++LHKN+T EL LP G+KAIG WVY K + + R++
Sbjct: 797 EALNSLDVALWMTAMQEEIEALHKNKTWELVPLPHGRKAIGNKWVYKIKRDGNDQVERYR 856
Query: 1070 ARLVAKGYAQKKRIDYNEVFSPIVKHSSIRTLLAFVAQFDLKL 942
ARLV KGYAQK+ ID+NE+FSP+V+ +++R +LA A FDL L
Sbjct: 857 ARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHL 899
Score = 119 bits (298), Expect(4) = e-113
Identities = 66/118 (55%), Positives = 83/118 (70%)
Frame = -1
Query: 703 DDSFIYLLLYVDDMLIAARSKSEIDMLKCRLSSKFEMKDLSEAKKILGMKIRRDGVKRRV 524
D+ FI LLLYVDDML+A +K I LK +L+ +FEMKDL A KILGM+I RD R++
Sbjct: 980 DNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNRKI 1039
Query: 523 WLS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSAFMSLSTYEERGYMTRVPYASAV 350
WLS K YL+K+L++F M + K STPL +FKLS+ M S ER M+RVPYASAV
Sbjct: 1040 WLSQKNYLKKILRRFNM-QDCKSISTPLPVNFKLSSSMCPSNEAERKEMSRVPYASAV 1096
Score = 105 bits (262), Expect(4) = e-113
Identities = 45/79 (56%), Positives = 59/79 (74%)
Frame = -2
Query: 945 ISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR*WYKRFDWF 766
+ LD+KTAFLHG+L+E+IYM QP F GKE+ VC+L KSLYGLKQ+PR WYKRFD F
Sbjct: 899 LEQLDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRCWYKRFDSF 958
Query: 765 MIGQKYTKSHHDHCVYFRK 709
++ Y + DHC Y+++
Sbjct: 959 IMSLGYNRLSSDHCAYYKR 977
Score = 191 bits (485), Expect(3) = 6e-86
Identities = 110/275 (40%), Positives = 157/275 (57%), Gaps = 4/275 (1%)
Frame = -1
Query: 2926 WLLNSTATYHVCTKRECFFSYEKLDTGVVLMGNDNPCRTVEIGTIRFKLHDEMIMELTEV 2747
WL++S AT+H+ ++RE F +YE + G V MGND+ IGTI+ K+ D I + EV
Sbjct: 292 WLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTIEEV 351
Query: 2746 RHIPDMTHNLISLGMLESKGFKVILEDGVSKVLHGALVII-ARRSCEKLILFEG*CSSR* 2570
RH+ + NL+SLG ++S G K +E+G+ K++ GALV++ A + C L + +G
Sbjct: 352 RHVNGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLMKAEKICANLFMLKGETLQEA 411
Query: 2569 XXXXXXXXXXXY*DMAYALGACK*KVSICGEIGTAERCYD---LQVGLNFCEHCVLGKQT 2399
LG +S G +ER V L FCEHCV KQ
Sbjct: 412 DACVASNGEESTMMWHLKLG----HMSEQGLKILSERKLPPGLKSVSLPFCEHCVTSKQH 467
Query: 2398 RVKFSTAIHRTRGTLDYVHSYVWGPSKAVSLGGKDWFVSFVDDFSRRVWVYTIRNKDEVL 2219
R+KFS +I R++ LD +HS VW S +S+GG + V+F+DD+SRR WVY I+ K +V
Sbjct: 468 RLKFSRSIARSKCILDLIHSDVW-ESPDISMGGAKYMVTFIDDYSRRCWVYPIKKKSDVF 526
Query: 2218 KVFIRWKKLIETQTGRKIKRLRLDNGGEYKSGSFL 2114
VF +K +E ++G+KIK LR DNGGEY FL
Sbjct: 527 PVFKEYKAWVELESGKKIKCLRTDNGGEYTDSEFL 561
Score = 148 bits (373), Expect(3) = 6e-86
Identities = 80/159 (50%), Positives = 105/159 (66%), Gaps = 4/159 (2%)
Frame = -3
Query: 2093 IIRHFTVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTA 1914
I R FTV TP QN VAERMN TL ++R M+ AG SFW +A AC++VNR PSTA
Sbjct: 569 IQRQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSPSTA 628
Query: 1913 IGGKTHLEVWTGKPAHDYDFLHVFGCPAY--FHVKE-D*LDPRTKKAIFIRFETGVKGYK 1743
IG KT +E+WTGKPA DY +LH FGCP Y ++ +E LDP+++K IF+ + GVKGY+
Sbjct: 629 IGLKTAMEMWTGKPA-DYSYLHAFGCPVYVMYNAQERTKLDPKSRKCIFLGYADGVKGYR 687
Query: 1742 LWDPKDRKTIQSSDVTFDEASMLKPNGSQ-*VENSSKTI 1629
LWDP K + S DV F E + + +G V+ S+T+
Sbjct: 688 LWDPTAHKIVISRDVIFVEDQLQRKDGDDGTVKEKSETV 726
Score = 30.8 bits (68), Expect(3) = 6e-86
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -2
Query: 3198 EAL-VAQERTKDRQKPGGKGKAHSKSTGNSLAHDECAFCHRSGH*KKECPKIKRKNNDTK 3022
EAL V + R+ +R G + H +S S + +C C + GH KKEC +K + K
Sbjct: 197 EALSVTRGRSTERGPSGSQN--HGRSKSRSKKNVKCYNCGKKGHVKKECWS-NQKRREGK 253
Query: 3021 NP 3016
P
Sbjct: 254 EP 255
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 139 bits (351), Expect(4) = e-111
Identities = 69/117 (58%), Positives = 87/117 (74%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*KDKVSQHC 172
L+YAM+CTRPD++Q V VSR+M D KEHW AVK IL+Y+ GT L F + +
Sbjct: 1095 LMYAMICTRPDIAQAVGTVSRFMADPGKEHWNAVKRILRYIRGTSGAALCFGGSEFTIR- 1153
Query: 171 VGYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
GYVDSD+AGDLDKR+ TTG+VFTL+GG VSW LQ+++ +STTEAEYMA T+A K
Sbjct: 1154 -GYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACK 1209
Score = 122 bits (307), Expect(4) = e-111
Identities = 68/162 (41%), Positives = 101/162 (62%), Gaps = 3/162 (1%)
Frame = -3
Query: 1418 DNS*WTDDDTENEAPVQESIATSRPKRNVRNPGWLVTDMVAY--ALPIISKD-VPSTYKE 1248
+NS + E E R R +R P W ++A A ++S+D PST+ E
Sbjct: 734 ENSEAEPEHEEQEPNEVNDAEPRRTTRQIRKPSWHSEYVMASHDAYCLLSEDGEPSTFHE 793
Query: 1247 AMQSSEFTIWDRAMYEEMQSLHKNET*ELSKLPKGKKAIGCMWVYTKKEGFSGEDVRFKA 1068
A+ S+ ++W AM EE+++LH+N T EL +LPKG+KAIG WV+ K + + R++A
Sbjct: 794 AVNGSDASLWMAAMQEEIEALHRNNTWELVELPKGRKAIGNKWVFKIKRDGNDQVERYRA 853
Query: 1067 RLVAKGYAQKKRIDYNEVFSPIVKHSSIRTLLAFVAQFDLKL 942
RLV KGYAQK+ ID+NE+FSP+V+ ++IR +LA A F+L L
Sbjct: 854 RLVVKGYAQKEGIDFNEIFSPVVRLTTIRIVLAMCAAFELHL 895
Score = 113 bits (283), Expect(4) = e-111
Identities = 63/118 (53%), Positives = 80/118 (67%)
Frame = -1
Query: 703 DDSFIYLLLYVDDMLIAARSKSEIDMLKCRLSSKFEMKDLSEAKKILGMKIRRDGVKRRV 524
D FI LLLYVDDML+ +K + LK +L+ +F+MKDL A KILGM+I RD R++
Sbjct: 976 DGDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKI 1035
Query: 523 WLS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSAFMSLSTYEERGYMTRVPYASAV 350
WLS K YLQKVL++F M STPL ++KLS+ M S+ ER M+RVPYASAV
Sbjct: 1036 WLSQKNYLQKVLRRFNMQDYNPI-STPLPVNYKLSSSMIPSSEAERMEMSRVPYASAV 1092
Score = 101 bits (251), Expect(4) = e-111
Identities = 43/79 (54%), Positives = 59/79 (74%)
Frame = -2
Query: 945 ISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR*WYKRFDWF 766
+ LD+KTAFLHG+L+E+IYM QP F+ +E+ VC+L KSLYGLKQ+PR WYKRFD F
Sbjct: 895 LEQLDVKTAFLHGELEEEIYMLQPEGFEEKERENLVCRLTKSLYGLKQAPRCWYKRFDSF 954
Query: 765 MIGQKYTKSHHDHCVYFRK 709
++ Y + DHC Y+++
Sbjct: 955 IMSLGYNRLSSDHCTYYKR 973
Score = 189 bits (480), Expect(2) = 2e-80
Identities = 110/285 (38%), Positives = 165/285 (57%), Gaps = 14/285 (4%)
Frame = -1
Query: 2926 WLLNSTATYHVCTKRECFFSYEKLDTGVVLMGNDNPCRTVEIGTIRFKLHDEMIMELTEV 2747
W+++S AT+H+ +R+ F +YE + G V MGND+ V IGT++ K++D I L EV
Sbjct: 291 WIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTLQEV 350
Query: 2746 RHIPDMTHNLISLGMLESKGFKVILEDGVSKVLHGALVII-ARRSCEKLILFEG*CSSR* 2570
RH+ ++ NL+S+G L+ G+K ++ G+ KV+ G+LV++ A++ L + G
Sbjct: 351 RHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLLG------ 404
Query: 2569 XXXXXXXXXXXY*DMAYALGACK*-------KVSICGEIGT---AERCYD---LQVGLNF 2429
D + A+G+ + ++ E G AER V L F
Sbjct: 405 -------DTWQMADASVAVGSQEETTMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPF 457
Query: 2428 CEHCVLGKQTRVKFSTAIHRTRGTLDYVHSYVWGPSKAVSLGGKDWFVSFVDDFSRRVWV 2249
CEHCV+ KQ R+KF+ + R++ LD +HS VW S VS+GG +FVSF+DD+SRR+WV
Sbjct: 458 CEHCVISKQHRLKFAKSTARSKHILDLIHSDVW-ESPEVSIGGAKYFVSFIDDYSRRLWV 516
Query: 2248 YTIRNKDEVLKVFIRWKKLIETQTGRKIKRLRLDNGGEYKSGSFL 2114
Y I+ K V VF +K +E +TG++IK LR DNGGEY G FL
Sbjct: 517 YPIKKKSGVYSVFKEFKAQVELETGKRIKCLRTDNGGEYTDGDFL 561
Score = 141 bits (355), Expect(2) = 2e-80
Identities = 77/173 (44%), Positives = 100/173 (57%), Gaps = 3/173 (1%)
Frame = -3
Query: 2093 IIRHFTVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTA 1914
I R FTV TP QN VAERMN TLL + R M+ AG KSFW +A AC+++NR PSTA
Sbjct: 569 ITRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGLAKSFWAEAAKTACYVINRSPSTA 628
Query: 1913 IGGKTHLEVWTGKPAHDYDFLHVFGCPAYF---HVKED*LDPRTKKAIFIRFETGVKGYK 1743
IG KT +E+W GKP DY L VFGCP Y + LDP++++ F+ + VKGY+
Sbjct: 629 IGLKTPMEMWKGKPG-DYSSLRVFGCPVYVMYNSQERTKLDPKSRRCTFLGYADNVKGYR 687
Query: 1742 LWDPKDRKTIQSSDVTFDEASMLKPNGSQ*VENSSKTIEGSQQVETDVSPFSP 1584
LWDP RK S DV F E + K + + T+E ++ + S P
Sbjct: 688 LWDPTARKIFVSRDVIFVENELQKEQKNDGTTKETATVEIEEKSGEENSEAEP 740
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 135 bits (339), Expect(4) = e-110
Identities = 65/117 (55%), Positives = 86/117 (73%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*KDKVSQHC 172
L+YAMVCTRPDL+ VS+VSR+M + K HW+AVKWI++YL G+ V L++ VS
Sbjct: 1423 LMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYLKGSSSVCLVYGNGDVSSGL 1482
Query: 171 VGYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
VG+ DSD+ GDL KRR T ++FTL G +SWR +LQ + +STTEAEYM+LTE +K
Sbjct: 1483 VGFTDSDHGGDLMKRRSLTCYIFTLFGCAISWRASLQPTVALSTTEAEYMSLTEGVK 1539
Score = 115 bits (288), Expect(4) = e-110
Identities = 68/126 (53%), Positives = 89/126 (70%), Gaps = 1/126 (0%)
Frame = -1
Query: 724 CLLSQTIDD-SFIYLLLYVDDMLIAARSKSEIDMLKCRLSSKFEMKDLSEAKKILGMKIR 548
C+ +T+ D SFIYLLLYVDDMLIAA++++EI+ LK LSS+FEMKDL AKKILGM+I
Sbjct: 1296 CVYFKTLPDGSFIYLLLYVDDMLIAAKNRAEINKLKQLLSSEFEMKDLGAAKKILGMEIW 1355
Query: 547 RDGVKRRVWLS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSAFMSLSTYEERGYMTRV 368
RD +++S + Y++K++Q F M ++K STPLA HFK ST EE YM V
Sbjct: 1356 RDRDAGLLYVSQQKYIEKLMQAFHM-DHSKPVSTPLAQHFKFDHSTLPSTDEEVEYMKSV 1414
Query: 367 PYASAV 350
PY+S V
Sbjct: 1415 PYSSVV 1420
Score = 114 bits (284), Expect(4) = e-110
Identities = 72/168 (42%), Positives = 98/168 (58%), Gaps = 16/168 (9%)
Frame = -3
Query: 1397 DDTENEAPV-----QESIATSRPKRNVRNPGWLV-------TDMVAYALPI---ISKDVP 1263
DDT E PV +SIA RP+R +R P V T+ VA+AL + I ++ P
Sbjct: 1068 DDTSEEQPVIDQNDSQSIAAXRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEP 1127
Query: 1262 STYKEAMQSSEFTIWDRAMYEEMQSLHKNET*ELSKLPKGKKAIGCMWVYTKKEGFS-GE 1086
+YKEAM+S + W +M +EM SL KN+T EL LP+G K + C W++ K+G S E
Sbjct: 1128 RSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISEDE 1187
Query: 1085 DVRFKARLVAKGYAQKKRIDYNEVFSPIVKHSSIRTLLAFVAQFDLKL 942
++K+RLVAK VFSP+VKH SIR LLA V+ F+L+L
Sbjct: 1188 PPKYKSRLVAK------------VFSPVVKHKSIRVLLAMVSVFNLEL 1223
Score = 109 bits (272), Expect(4) = e-110
Identities = 48/81 (59%), Positives = 63/81 (77%)
Frame = -2
Query: 948 EISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR*WYKRFDW 769
E+ LD+KTAFLHG+L+E+IYM QP F + K D+VC L+KSLYGLKQSPR WYKRFD
Sbjct: 1222 ELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFDA 1281
Query: 768 FMIGQKYTKSHHDHCVYFRKL 706
FM+ ++ ++ +D CVYF+ L
Sbjct: 1282 FMVSHEFMRNQYDSCVYFKTL 1302
Score = 159 bits (402), Expect(3) = 2e-76
Identities = 94/292 (32%), Positives = 148/292 (50%), Gaps = 17/292 (5%)
Frame = -1
Query: 2941 SGQSEWLLNSTATYHVCTKRECFFSYEKLDTGVVLMGNDNPCRTVEIGTIRFKLHDEMIM 2762
S W+L++ A+YH+ R+ F ++++ + G V +G+D G+++ K++D ++
Sbjct: 615 SSAESWILDTGASYHMAYSRDLFTTFKEWN-GSVKLGDDGELGVKGSGSVQIKMYDGLVR 673
Query: 2761 ELTEVRHIPDMTHNLISLGMLESKGFKVILEDGVSKVLHGALVIIARRSCEKLILFEG*C 2582
L ++P + NLIS+G L+ G+ GV +V GALV++ R + G
Sbjct: 674 TLN-AWYVPGLRKNLISVGTLDKNGYTFSGSGGVLRVSKGALVVMKGRLQHGIYTLMG-- 730
Query: 2581 SSR*XXXXXXXXXXXY*DMAYALGACK*KVSICGEIGTAERCYDLQVGLN---------- 2432
+ LG + C E+ + + GL+
Sbjct: 731 -------------------SSVLGTAAVEEDNCTELWHRRLGHMSEKGLSILSKQGLLSG 771
Query: 2431 -------FCEHCVLGKQTRVKFSTAIHRTRGTLDYVHSYVWGPSKAVSLGGKDWFVSFVD 2273
FCE CV+GKQ RVKFS H T G L+Y+HS +WGPS S G ++V+F+D
Sbjct: 772 AETGKLKFCETCVMGKQRRVKFSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFID 831
Query: 2272 DFSRRVWVYTIRNKDEVLKVFIRWKKLIETQTGRKIKRLRLDNGGEYKSGSF 2117
DFSR+VWVY ++ KDEV F WK ++E +TG+ +K LR DNG E+ + F
Sbjct: 832 DFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDF 883
Score = 155 bits (391), Expect(3) = 2e-76
Identities = 90/171 (52%), Positives = 115/171 (67%), Gaps = 6/171 (3%)
Frame = -3
Query: 2093 IIRHFTVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTA 1914
I+RH TVR TP QN VAERMN TL+ + RCM +AG K FW +A+ A +LVNR PSTA
Sbjct: 892 IVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTA 951
Query: 1913 IGGKTHLEVWTGKPAHDYDFLHVFGCPAYFHVKED*LDPRTKKAIFIRFETGVKGYKLWD 1734
I KT EVW+GKP+ +Y L +FGCPAY HV + L+PR K IF+ + TGVKGY+LW
Sbjct: 952 IDFKTPQEVWSGKPS-NYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWC 1010
Query: 1733 PKDR--KTIQSSDVTFDEASML---KPNGSQ*VENSSKT-IEGSQQVETDV 1599
+DR K I S DVTFDE++M K G + +SKT + +Q+VE +V
Sbjct: 1011 TEDRTPKFIISRDVTFDESAMFGQRKEFGD--LAGTSKTDLGANQKVEFEV 1059
Score = 23.9 bits (50), Expect(3) = 2e-76
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 1564 PIGNQNEAPVQELIATSRPKRNVRKP 1487
P+ +QN++ + IA RP+R +R+P
Sbjct: 1075 PVIDQNDS---QSIAAXRPRREIRRP 1097
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 129 bits (325), Expect(4) = e-108
Identities = 64/117 (54%), Positives = 85/117 (72%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*KDKVSQHC 172
L++AM+CTRPD++Q V +VSRYM + +EHW VK IL+Y+ GT DV L + +
Sbjct: 1088 LMFAMICTRPDIAQAVGVVSRYMANPGREHWNCVKRILRYIKGTSDVALCYGGSDFIIN- 1146
Query: 171 VGYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
GYVDSDYAGDLDK + TTG+VF ++GG VSW LQ+++ STTEAEY+A T+A K
Sbjct: 1147 -GYVDSDYAGDLDKSKSTTGYVFKVAGGAVSWVSKLQAVVATSTTEAEYVAATQASK 1202
Score = 119 bits (297), Expect(4) = e-108
Identities = 66/161 (40%), Positives = 99/161 (61%), Gaps = 7/161 (4%)
Frame = -3
Query: 1403 TDDDTENEAPVQESIA---TSRPKRNVRNPGW----LVTDMVAYALPIISKDVPSTYKEA 1245
++ + +E P ES T + R R P W ++ VAY L + PST++EA
Sbjct: 729 SEAEPAHEEPEPESSGAPTTRQSDREKRRPTWHSDYVMEGNVAYCL-LTEDGEPSTFQEA 787
Query: 1244 MQSSEFTIWDRAMYEEMQSLHKNET*ELSKLPKGKKAIGCMWVYTKKEGFSGEDVRFKAR 1065
+ SS+ + W AM EE+++LHKN T +L LP+G+K IG WV+ K + R++AR
Sbjct: 788 INSSDVSQWTAAMQEEIEALHKNNTWDLVPLPQGRKPIGNKWVFKIKRNGDDQVERYRAR 847
Query: 1064 LVAKGYAQKKRIDYNEVFSPIVKHSSIRTLLAFVAQFDLKL 942
LV KGYAQK+ ID+NE+FSP+V+ +++R +LA A F+L L
Sbjct: 848 LVVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFNLHL 888
Score = 119 bits (297), Expect(4) = e-108
Identities = 65/117 (55%), Positives = 83/117 (70%)
Frame = -1
Query: 700 DSFIYLLLYVDDMLIAARSKSEIDMLKCRLSSKFEMKDLSEAKKILGMKIRRDGVKRRVW 521
D+F+ LLLYVDDML+A +K ID LK +L+ +FEMKDL A KILGM+I RD R++W
Sbjct: 970 DNFVILLLYVDDMLVAGPNKDHIDELKAQLAREFEMKDLGPANKILGMQIHRDRGNRKIW 1029
Query: 520 LS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSAFMSLSTYEERGYMTRVPYASAV 350
LS K YL+K+L +F M + K STPL + K+S+ MS S E R M+RVPYASAV
Sbjct: 1030 LSQKNYLKKILSRFSM-QDCKSISTPLPINLKVSSSMSPSNEEGRMEMSRVPYASAV 1085
Score = 97.4 bits (241), Expect(4) = e-108
Identities = 43/79 (54%), Positives = 58/79 (73%)
Frame = -2
Query: 945 ISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR*WYKRFDWF 766
+ LD+KTAFLHGDL+E+IYM QP F+ ++ VC+L KSLYGLKQ+PR WYKRFD F
Sbjct: 888 LEQLDVKTAFLHGDLEEEIYMLQPEGFEDKENQNLVCRLNKSLYGLKQAPRCWYKRFDSF 947
Query: 765 MIGQKYTKSHHDHCVYFRK 709
++ Y + + D C YF++
Sbjct: 948 IMCLGYNRLNADPCAYFKR 966
Score = 163 bits (413), Expect(3) = 4e-74
Identities = 97/274 (35%), Positives = 148/274 (54%), Gaps = 4/274 (1%)
Frame = -1
Query: 2926 WLLNSTATYHVCTKRECFFSYEKLDTGVVLMGNDNPCRTVEIGTIRFKLHDEMIMELTEV 2747
WL++S ATYH+ +++E F YE + G V +D+ + IGTI+ K++D + + +V
Sbjct: 282 WLIDSGATYHMTSRKEWFHHYEPISGGSVYSCDDHALEIIGIGTIKLKMYDGTVQTVQDV 341
Query: 2746 RHIPDMTHNLISLGMLESKGFKVILEDGVSKVLHGALVII-ARRSCEKLILFEG*CSSR* 2570
RH+ + NL+S G+L++ ++ + GV K+ GALV++ + L + +G
Sbjct: 342 RHVKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALVVMKGEKIAANLYMLKGETLQEA 401
Query: 2569 XXXXXXXXXXXY*DMAYALGACK*KVSICG-EIGTAERCYD--LQVGLNFCEHCVLGKQT 2399
LG +S G +I ++ +V L CEHC+ KQ
Sbjct: 402 EASVAACSPDSTLLWHQKLG----HMSDQGMKILVEQKLIPGLTKVSLPLCEHCITSKQH 457
Query: 2398 RVKFSTAIHRTRGTLDYVHSYVWGPSKAVSLGGKDWFVSFVDDFSRRVWVYTIRNKDEVL 2219
R+KFST+ R + L+ VHS VW + SLGG +FVSF+DD+SRR WVY I+ K +V
Sbjct: 458 RLKFSTSNSRGKVVLELVHSDVW-QAPVPSLGGAKYFVSFIDDYSRRCWVYPIKKKSDVF 516
Query: 2218 KVFIRWKKLIETQTGRKIKRLRLDNGGEYKSGSF 2117
F +K +E +G+KIK R DNGGEY S F
Sbjct: 517 ATFKAFKARVELDSGKKIKCFRTDNGGEYTSEEF 550
Score = 134 bits (337), Expect(3) = 4e-74
Identities = 79/176 (44%), Positives = 107/176 (60%), Gaps = 6/176 (3%)
Frame = -3
Query: 2093 IIRHFTVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTA 1914
I R FTV TP QN VAERMN TLL + R M+ AG KSFW +A+ AC+LVNR PSTA
Sbjct: 559 IKRQFTVAYTPQQNGVAERMNRTLLERTRAMLRAAGLEKSFWAEAVNTACYLVNRAPSTA 618
Query: 1913 IGGKTHLEVWTGKPAHDYDFLHVFGCPAY--FHVKE-D*LDPRTKKAIFIRFETGVKGYK 1743
I KT +E+WTGKP DY LH+FG Y ++ +E LDP+++K F+ + GVKGY+
Sbjct: 619 IELKTPMEMWTGKPV-DYSNLHIFGSIVYAMYNAQEITKLDPKSRKCRFLGYADGVKGYR 677
Query: 1742 LWDPKDRKTIQSSDVTFDEASMLK---PNGSQ*VENSSKTIEGSQQVETDVSPFSP 1584
LWDP K + S DV F E + + + ++ + + I+ ++ E D S P
Sbjct: 678 LWDPTAHKVVISRDVIFVEDRLQRGEVDDSTEKEKPETTQIQVEEEFEQDSSEAEP 733
Score = 32.7 bits (73), Expect(3) = 4e-74
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 9/179 (5%)
Frame = -2
Query: 3528 LEEKYFTKTLENRLYLKGRFYTFRRRPNISMAERV------YE*FRQVAC*LGESR*DCQ 3367
L Y K+L N+++LK + YT R + S+ E + + ++C + +
Sbjct: 84 LNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTEHLNTLNTLFSQLTSLSCKIEPQ----E 139
Query: 3366 RRR*SIASAEFPTS*I*AL*ENSSLW*EYCYTDVSTAXXXXXXXXXXXXXXXXSFFEA-- 3193
R + S + N+ L + DV+ A + +A
Sbjct: 140 RAELLLQSLPDSYDQLIINLTNNILTDYLVFDDVAAAVLEEESRRKNKEDRQVNLQQAEA 199
Query: 3192 -LVAQERTKDRQKPGGKGKAHSKSTGNSLAHDECAFCHRSGH*KKECPKIKRKNNDTKN 3019
V + R+ +R + G+G+ SKS+ +L C C + GH KK+C + + +N N
Sbjct: 200 LTVMRGRSTERGQSSGRGR--SKSSKKNLT---CYNCGKKGHLKKDCWNLAQNSNPQGN 253
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 126 bits (316), Expect(4) = e-107
Identities = 62/118 (52%), Positives = 84/118 (71%), Gaps = 1/118 (0%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*-KDKVSQH 175
L+YAMVCTRPD++ V +VSR++ + KEHW+AVKWIL+YL GT L F D + +
Sbjct: 1118 LMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILK- 1176
Query: 174 CVGYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
GY D+D AGD+D R+ +TG++FT SGG +SW+ LQ + +STTEAEY+A TE K
Sbjct: 1177 --GYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGK 1232
Score = 115 bits (288), Expect(4) = e-107
Identities = 53/87 (60%), Positives = 67/87 (77%)
Frame = -2
Query: 969 LRSSV*SEISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR* 790
L +S+ E+ LD+KTAFLHGDL+E+IYM QP F+VAGK+ VCKL KSLYGLKQ+PR
Sbjct: 910 LAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQ 969
Query: 789 WYKRFDWFMIGQKYTKSHHDHCVYFRK 709
WY +FD FM Q Y K++ D CVYF++
Sbjct: 970 WYMKFDSFMKSQTYLKTYSDPCVYFKR 996
Score = 115 bits (288), Expect(4) = e-107
Identities = 63/118 (53%), Positives = 83/118 (70%)
Frame = -1
Query: 703 DDSFIYLLLYVDDMLIAARSKSEIDMLKCRLSSKFEMKDLSEAKKILGMKIRRDGVKRRV 524
+++FI LLLYVDDMLI + K I LK LS F+MKDL A++ILGMKI R+ R++
Sbjct: 999 ENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKL 1058
Query: 523 WLS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSAFMSLSTYEERGYMTRVPYASAV 350
WLS + Y+++VL++F M N K STPLA H KLS M +T EE+G M +VPY+SAV
Sbjct: 1059 WLSQEKYIERVLERFNM-KNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAV 1115
Score = 104 bits (259), Expect(4) = e-107
Identities = 55/115 (47%), Positives = 78/115 (67%), Gaps = 1/115 (0%)
Frame = -3
Query: 1283 IISKD-VPSTYKEAMQSSEFTIWDRAMYEEMQSLHKNET*ELSKLPKGKKAIGCMWVYTK 1107
+IS D P + KE + E +AM EEM+SL KN T +L +LPKGK+ + C WV+
Sbjct: 804 LISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKL 863
Query: 1106 KEGFSGEDVRFKARLVAKGYAQKKRIDYNEVFSPIVKHSSIRTLLAFVAQFDLKL 942
K+ + VR+KARLV KG+ QKK ID++E+FSP+VK +SIRT+L+ A DL++
Sbjct: 864 KKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEV 918
Score = 146 bits (368), Expect(5) = 1e-66
Identities = 96/279 (34%), Positives = 147/279 (52%), Gaps = 6/279 (2%)
Frame = -1
Query: 2935 QSEWLLNSTATYHVCTKRECFFSYEKLDTGVVLMGNDNPCRTVEIGTIRFKLHDEMIMEL 2756
+SEW++++ A++H R+ F Y D G V MGN + + IG I K + + L
Sbjct: 291 ESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVL 350
Query: 2755 TEVRHIPDMTHNLISLGMLESKGFKVILEDGVSKVLHGALVI---IARRSCEK--LILFE 2591
+VRH+PD+ NLIS L+ G++ + ++ G+LVI +AR + + + +
Sbjct: 351 KDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEICQ 410
Query: 2590 G*CSSR*XXXXXXXXXXXY*DMA-YALGACK*KVSICGEIGTAERCYDLQVGLNFCEHCV 2414
G ++ M+ L K I GT + D +C+
Sbjct: 411 GELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCD---------YCL 461
Query: 2413 LGKQTRVKFSTAIHRTRGTLDYVHSYVWGPSKAVSLGGKDWFVSFVDDFSRRVWVYTIRN 2234
GKQ RV F T+ R LD V+S V GP + S+GG +FV+F+DD SR++WVY ++
Sbjct: 462 FGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKT 521
Query: 2233 KDEVLKVFIRWKKLIETQTGRKIKRLRLDNGGEYKSGSF 2117
KD+V +VF ++ L+E +TGRK+KRLR DNGGEY S F
Sbjct: 522 KDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREF 560
Score = 103 bits (258), Expect(5) = 1e-66
Identities = 63/142 (44%), Positives = 83/142 (58%), Gaps = 4/142 (2%)
Frame = -3
Query: 2090 IRHF-TVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTA 1914
IRH TV TP N VAERMN T++ KVR M+ A KSFW +A+ AC+L+NR PS
Sbjct: 569 IRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVP 628
Query: 1913 IGGKTHLEVWTGKPAHDYDFLHVFGCPAYFHVKED---*LDPRTKKAIFIRFETGVKGYK 1743
+ + VWT K Y L VFGC A+ HV ++ LD ++ IFI + GY+
Sbjct: 629 LAFEIPERVWTNKEV-SYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYR 687
Query: 1742 LWDPKDRKTIQSSDVTFDEASM 1677
LWDP +K I+S DV F E+ +
Sbjct: 688 LWDPVKKKVIRSRDVVFRESEV 709
Score = 32.7 bits (73), Expect(5) = 1e-66
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = -3
Query: 3425 YMNDFAKLLADLANLDEIVKDDDRAXXXXXXXXLEYEHFKKTLLYGKSIV 3276
++N F L+ LANL ++++D+A Y++ T+L+GK+ +
Sbjct: 121 HLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTI 170
Score = 32.0 bits (71), Expect(5) = 1e-66
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = -2
Query: 3198 EALVAQERTKDRQKPG---GKGKAHSKSTGNSLAH-DECAFCHRSGH*KKECPKIKRKNN 3031
+AL+ + R + Q+ G+ A KS S + C C++ GH K++CP ++
Sbjct: 194 QALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPNPRKGKG 253
Query: 3030 DTKNPR 3013
+T +
Sbjct: 254 ETSGQK 259
Score = 31.2 bits (69), Expect(5) = 1e-66
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 3573 SNNLNETYTKAI*KILEEKYFTKTLENRLYLKGRFY 3466
+N ++E + I LE Y +KTL N+LYLK + Y
Sbjct: 73 NNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLY 108
>emb|CAN69998.1| hypothetical protein VITISV_006839 [Vitis vinifera]
Length = 1211
Score = 134 bits (338), Expect(4) = e-105
Identities = 66/117 (56%), Positives = 84/117 (71%)
Frame = -2
Query: 351 LIYAMVCTRPDLSQVVSMVSRYMHDTEKEHWQAVKWILQYLLGTMDVGLMF*KDKVSQHC 172
L+YAMVCTRPD++ V +VSR+M K+HW+AVKWIL+YL G++D L F S
Sbjct: 1002 LMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCF--TGASLKL 1059
Query: 171 VGYVDSDYAGDLDKRRYTTGHVFTLSGGPVSWRFTLQSIIIMSTTEAEYMALTEAIK 1
GYVD+D+AGD+D R+ TTG VFTL G +SW LQ I+ +STTEAEY+A TEA K
Sbjct: 1060 QGYVDADFAGDIDSRKSTTGFVFTLGGTTISWTSNLQKIVTLSTTEAEYVAATEAGK 1116
Score = 109 bits (272), Expect(4) = e-105
Identities = 63/125 (50%), Positives = 81/125 (64%)
Frame = -1
Query: 724 CLLSQTIDDSFIYLLLYVDDMLIAARSKSEIDMLKCRLSSKFEMKDLSEAKKILGMKIRR 545
C ++ D+S+I LLLYVDDMLI +I+ LK +LS +F MKDL AK+ILGM+I R
Sbjct: 876 CCYFKSFDNSYIILLLYVDDMLITGFDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIR 935
Query: 544 DGVKRRVWLS*KTYLQKVLQQFCMVGNTKFASTPLAPHFKLSAFMSLSTYEERGYMTRVP 365
D + LS Y++KVL +F M K STPL HFKLS S T EER +M++VP
Sbjct: 936 DKANGTLKLSQSEYVKKVLSRFNM-NEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVP 994
Query: 364 YASAV 350
YASA+
Sbjct: 995 YASAI 999
Score = 107 bits (267), Expect(4) = e-105
Identities = 65/158 (41%), Positives = 89/158 (56%), Gaps = 5/158 (3%)
Frame = -3
Query: 1400 DDDTENEAPVQESIATSRPKRNVRNPGWLVTDMVAYA-----LPIISKDVPSTYKEAMQS 1236
++D EN V + S P VR + + Y+ L + D P Y EA+Q
Sbjct: 650 EEDKEN---VNSQVDLSTPVAEVRRSSRNIRPLQRYSPVLNYLLLTDGDEPEGYDEALQD 706
Query: 1235 SEFTIWDRAMYEEMQSLHKNET*ELSKLPKGKKAIGCMWVYTKKEGFSGEDVRFKARLVA 1056
+ W+ AM +EM SL N+T EL++LP GKKA+ WVY K + G R+KARLV
Sbjct: 707 ENSSKWELAMKDEMDSLLGNQTWELTELPVGKKALHNKWVYRIKNEYDGSK-RYKARLVV 765
Query: 1055 KGYAQKKRIDYNEVFSPIVKHSSIRTLLAFVAQFDLKL 942
KG+ QK+ IDY E+FSP+VK S+IR +L VA +L L
Sbjct: 766 KGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAKNLHL 803
Score = 103 bits (258), Expect(4) = e-105
Identities = 47/78 (60%), Positives = 58/78 (74%)
Frame = -2
Query: 945 ISSLDIKTAFLHGDLDEKIYMTQPSWFKVAGKEDYVCKLRKSLYGLKQSPR*WYKRFDWF 766
+ LD+KTAFLHGDL+E +YM QP F V G+E+ VCKLRKSLYGLKQ+PR WYK+FD F
Sbjct: 803 LEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNF 862
Query: 765 MIGQKYTKSHHDHCVYFR 712
M + + DHC YF+
Sbjct: 863 MHRIGFKRCEADHCCYFK 880
Score = 130 bits (328), Expect(2) = 1e-44
Identities = 89/284 (31%), Positives = 133/284 (46%), Gaps = 9/284 (3%)
Frame = -1
Query: 2941 SGQSEWLLNSTATYHVCTKRECFFSYEKLDTGVVLMGNDNPCRTVEIGTIRFKLHDEMIM 2762
SGQ N T H KR+C +K D+ V T L + +
Sbjct: 233 SGQQVQCWNCGKTGHF--KRQCKSPKKK--------NEDDSANAV---TEEISLPNGSVW 279
Query: 2761 ELTEVRHIPDMTHNLISLGMLESKGFKVILEDGVSKVLHGALVI--------IARRSCEK 2606
L +VRHIP++ NLIS+G L+ +G ++ G KV G V+ + SC +
Sbjct: 280 LLEKVRHIPELRRNLISIGQLDDEGHAILFVGGTWKVTKGXRVLAHGKKTGTLYMTSCPR 339
Query: 2605 LILFEG*CSSR*XXXXXXXXXXXY*DMAYALGACK*KVSICGEIGTAERCYDLQVGLNFC 2426
+ S+ M L G++ + + + C
Sbjct: 340 DTIVVADASTDTSLWHRRLGHMSEKGMKMLLSK--------GKLPELK-----SIDFDMC 386
Query: 2425 EHCVLGKQTRVKFSTAIHRTRGT-LDYVHSYVWGPSKAVSLGGKDWFVSFVDDFSRRVWV 2249
E C+LGKQ +V F ++ L+ VH+ +WGPS SLGG ++++F+DD SR+VWV
Sbjct: 387 ESCILGKQKKVSFLKTGRTSKAEKLELVHTDLWGPSPVASLGGSRYYITFIDDSSRKVWV 446
Query: 2248 YTIRNKDEVLKVFIRWKKLIETQTGRKIKRLRLDNGGEYKSGSF 2117
Y ++NK +V F +WK ++ET+TG K+K LR DNGGEY G F
Sbjct: 447 YFLKNKSDVFVTFKKWKVMVETETGLKVKCLRSDNGGEYIDGGF 490
Score = 80.1 bits (196), Expect(2) = 1e-44
Identities = 62/181 (34%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Frame = -3
Query: 2078 TVRRTP*QNEVAERMNCTLL*KVRCMISNAG*GKSFWTKALTYACHLVNRLPSTAIGGKT 1899
T+ TP QN VAERMN TL + R M +AG K+FW A++ A +L+NR PS + +
Sbjct: 504 TIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKNFWADAVSTAAYLINRGPSXPMEFRL 563
Query: 1898 HLEVWTGKPAHDYDFLHVFGCPAYFHVKED---*LDPRTKKAIFIRFETGVKGYKLWDPK 1728
EVW+GK + L VFGC +Y H+ D LD ++K FI + GY+
Sbjct: 564 XEEVWSGKEV-KFSHLKVFGCVSYVHIDSDARSKLDAKSKICFFIGYGDEKFGYRSTVTS 622
Query: 1727 DRKTI---QSSDVTFDE--ASMLKPNGSQ*VENSSKTIEGSQQV------ETDVSPFSPY 1581
D I +S V DE S ++ G + EN + ++ S V ++ P Y
Sbjct: 623 DVIEIDQKKSEFVNLDELTESTVQKGGEEDKENVNSQVDLSTPVAEVRRSSRNIRPLQRY 682
Query: 1580 S 1578
S
Sbjct: 683 S 683