BLASTX nr result
ID: Paeonia23_contig00003767
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia23_contig00003767
(1747 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein A... 63 1e-18
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 57 3e-16
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 59 2e-15
ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein A... 56 7e-14
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta... 55 8e-14
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 56 4e-13
ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204... 57 5e-13
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 55 9e-13
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 62 1e-12
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 54 1e-12
ref|XP_004174148.1| PREDICTED: uncharacterized protein LOC101232... 54 4e-12
ref|XP_004305958.1| PREDICTED: uncharacterized protein LOC101308... 79 8e-12
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 55 3e-11
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ... 62 5e-11
ref|XP_004173049.1| PREDICTED: putative ribonuclease H protein A... 56 1e-10
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 49 1e-10
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 50 2e-10
ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcript... 51 3e-10
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali... 54 5e-10
dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like ... 50 5e-10
>ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
sativus]
Length = 288
Score = 63.2 bits (152), Expect(2) = 1e-18
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%)
Frame = -2
Query: 1737 KHIWRIVTKEESN*VKWI-FFRLKYKSFWAVRCFQDCPWYLRKILKIRGRFFGLVKCCIG 1561
K +W ++ K S V W+ + LK +S W + W R IL+ R VK +G
Sbjct: 37 KILWLLLVKSCSLWVAWVEAYILKGRSLWEIDVGVGRSWCFRAILRKRDILKAHVKMEVG 96
Query: 1560 DGNKVFLWCHN*HLLGSLCGRVSTRIIYDFASSLDAKVCSVI-FNGGWK*LXXXSNVVLE 1384
+G K +W G + + R+IYD S DA++ + +G W+ + +++
Sbjct: 97 NGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLD-LMD 155
Query: 1383 VIDNC-SVAPNVNVEEMYVWLP-TNSTFSIQSTWNCFRGLIPKVDWARLVWQG 1231
+ D V P+ +VE+M+V +P ++ +FSI S R +V W+ L+W G
Sbjct: 156 IWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGG 208
Score = 58.9 bits (141), Expect(2) = 1e-18
Identities = 26/65 (40%), Positives = 39/65 (60%)
Frame = -3
Query: 1238 GKGHFSKVAFITWLAVRGGLATQDKLTQWRIIERMSCVLSRSQVEDNNHLFFSCDFIALI 1059
G G+ K +F TWLA++ L T+D+L++W +SC+L E +HLFF C F I
Sbjct: 207 GGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGRNYESRDHLFFPCPFGWEI 266
Query: 1058 WKQVL 1044
W ++L
Sbjct: 267 WSRIL 271
>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
putative protein [Arabidopsis thaliana]
Length = 473
Score = 57.0 bits (136), Expect(2) = 3e-16
Identities = 26/71 (36%), Positives = 37/71 (52%)
Frame = -3
Query: 1220 KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLSRSQVEDNNHLFFSCDFIALIWKQVLR 1041
K AF WLAV L+T D++T W + +C+L +E +HLFFSC F IW+ + +
Sbjct: 317 KHAFCMWLAVHNRLSTGDRMTLWNMGVDATCILCNKALESRDHLFFSCPFATEIWEPLAK 376
Query: 1040 WSLIAVDLVDW 1008
DW
Sbjct: 377 TIYNTCFYTDW 387
Score = 56.6 bits (135), Expect(2) = 3e-16
Identities = 56/178 (31%), Positives = 74/178 (41%), Gaps = 8/178 (4%)
Frame = -2
Query: 1746 CLGKHIWRIVTKEESN*VKWIFFRLKYK-SFWAVRCFQDC-PWYLRKILKIRGRFFGLVK 1573
C K IWRI++ +S VKWI L K SFWAVR W RKILK R L K
Sbjct: 135 CCLKLIWRIISHADSLWVKWIQSSLLKKVSFWAVRENTSLGSWMWRKILKFRDIARTLCK 194
Query: 1572 CCIGDGNKVFLWCHN*HLLGSLCGRVSTRIIYDFASSLDAKVCSVIFNGGWK*LXXXSNV 1393
I +G + W + LG L R D + A V G + +N
Sbjct: 195 VEINNGARTSFWYDDWSDLGRLIDSAGDRGAIDLGINKHATVVEAW--GNRRRRRHRTNF 252
Query: 1392 VLEVIDNCSVAPNVN--VEEMYVWLPTN----STFSIQSTWNCFRGLIPKVDWARLVW 1237
+ V + ++ N E+ +W S FS + TWN R + KV W + VW
Sbjct: 253 LNRVEERLILSWNSRNQAEDRALWKGKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVW 310
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 58.9 bits (141), Expect(2) = 2e-15
Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 9/179 (5%)
Frame = -2
Query: 1746 CLGKHIWRIVTKEESN*VKWIFFRL-KYKSFWAVR-CFQDCPWYLRKILKIRGRFFGLVK 1573
C K +W+IV+ S VKW+ L + SFW V+ W +K+LK R L K
Sbjct: 886 CCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSK 945
Query: 1572 CCIGDGNKVFLWCHN*HLLGSLCGRVSTRIIYDFASSLDAKVCSVIFNGGWK*LXXXSNV 1393
+G+G + W N LG L R R + D S V N + N
Sbjct: 946 VEVGNGKQTSFWYDNWSDLGQLLERTGDRGLIDLGISRRMTVEEAWTNRRQR---RHRND 1002
Query: 1392 VLEVIDNC---SVAPNVNVEEMYVWLPTN----STFSIQSTWNCFRGLIPKVDWARLVW 1237
V VI++ S E+ +W + +TFS + TW+ R +V W +++W
Sbjct: 1003 VYNVIEDALKKSWDTRTETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIW 1061
Score = 52.0 bits (123), Expect(2) = 2e-15
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = -3
Query: 1220 KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLSRSQVEDNNHLFFSCDFIALIWKQVLR 1041
K +F +WLA G L T D++ W C+ + +E +HLFF+C F ++IW + R
Sbjct: 1068 KYSFCSWLAAHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIWVDLAR 1127
>ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
sativus]
Length = 342
Score = 56.2 bits (134), Expect(2) = 7e-14
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 4/173 (2%)
Frame = -2
Query: 1737 KHIWRIVTKEESN*VKWI-FFRLKYKSFWAVRCFQDCPWYLRKILKIRGRFFGLVKCCIG 1561
K +W ++ K S V W+ + LK +S W + + +G
Sbjct: 57 KILWLLLVKSGSLWVSWVESYILKGRSLWEIDAGME----------------------VG 94
Query: 1560 DGNKVFLWCHN*HLLGSLCGRVSTRIIYDFASSLDAKVCSVIF-NGGWK*LXXXSNVVLE 1384
+G K +W G + + R+IYD S D ++ + NG W+ ++ ++
Sbjct: 95 NGRKCRVWLVPWIQGGPIIQQFGERVIYDAGSRWDVRLVDFMGRNGDWRWSLVSLDL-MD 153
Query: 1383 VIDNCS-VAPNVNVEEMYVWLP-TNSTFSIQSTWNCFRGLIPKVDWARLVWQG 1231
+ D V P+ +VE+ +VW+P + +FSI S W R +V W+ L+W G
Sbjct: 154 IWDRVQGVRPSPSVEDRWVWVPGSRDSFSITSAWETIRPHSSRVGWSGLLWGG 206
Score = 49.7 bits (117), Expect(2) = 7e-14
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = -3
Query: 1238 GKGHFSKVAFITWLAVRGGLATQDKLTQWRIIERMSCVLSRSQVEDNNHLFF 1083
G G+ K +F WLA+R L+T+D+L++W +SC+L E NHLFF
Sbjct: 205 GGGNIPKHSFCAWLAIRDRLSTRDRLSRWDRSIPLSCLLCGGNYESRNHLFF 256
>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1447
Score = 55.1 bits (131), Expect(3) = 8e-14
Identities = 49/181 (27%), Positives = 71/181 (39%), Gaps = 11/181 (6%)
Frame = -2
Query: 1746 CLGKHIWRIVTKEESN*VKWIFFRL-KYKSFWAVRCFQDC-PWYLRKILKIRGRFFGLVK 1573
C K IWRI++ +S VKWI L K SFW ++ W +K+LK R K
Sbjct: 1110 CCLKLIWRILSHGDSLWVKWIETNLLKNNSFWIIKSSTTMGSWMWKKLLKYREVAKTFSK 1169
Query: 1572 CCIGDGNKVFLWCHN*HLLGSLCGRVSTRIIYDFASSLDAKVCSVIFNGGWK*LXXXSNV 1393
+ +G + W + +G + + + I D D V V W ++
Sbjct: 1170 IEVHNGQRTSFWYDDWSCMGRIMNFIGDKGIIDLGIKRDKLVAEV-----WDTHRSRRHI 1224
Query: 1392 V--LEVIDNCSVAPNVNVEEM---YVWLPTNST----FSIQSTWNCFRGLIPKVDWARLV 1240
L ++N N +E VW N FS + TWN R KV W + V
Sbjct: 1225 TDYLNQVENVIATSKANRKEKADDVVWRGRNDIYKPQFSTRDTWNNIRTTATKVTWYKGV 1284
Query: 1239 W 1237
W
Sbjct: 1285 W 1285
Score = 49.7 bits (117), Expect(3) = 8e-14
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = -3
Query: 1220 KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLSRSQVEDNNHLFFSCDFIALIWKQVLR 1041
K +F WLA L+T D++ W+ + SCV + +HLFF+C + + +W +
Sbjct: 1292 KFSFCVWLAALDRLSTGDRMANWKGVSSGSCVFCNHPTKSRDHLFFNCPYSSEVWTVTAK 1351
Query: 1040 WSLIAVDLVDW 1008
L DW
Sbjct: 1352 NILTTRFTTDW 1362
Score = 20.4 bits (41), Expect(3) = 8e-14
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -1
Query: 946 KCSIYLVWLEHNR 908
+ S+Y +W E NR
Sbjct: 1387 QASVYSIWSERNR 1399
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 56.2 bits (134), Expect(2) = 4e-13
Identities = 48/175 (27%), Positives = 68/175 (38%), Gaps = 10/175 (5%)
Frame = -2
Query: 1731 IWRIVTKEESN*VKWI-FFRLKYKSFWAVRCFQDCPWYLRKILKIRGRFFGLVKCCIGDG 1555
IW + ++ S +W RL + SFW V Q PW + +L +R +K +G+G
Sbjct: 744 IWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNG 803
Query: 1554 NKVFLWCHN*HLLGSL---CGRVSTRIIYDFASSLDAKVCSVIFNGGWK*LXXXSNVVLE 1384
V W LG L G V +R AKV I GW+ S
Sbjct: 804 GTVSFWFDCWTSLGPLIKYLGDVGSR---PLRIPFSAKVADAIDGSGWRLPLSRSLTADS 860
Query: 1383 VIDNCSVAP---NVNVEEMYVWLPTN---STFSIQSTWNCFRGLIPKVDWARLVW 1237
++ + + P + V + Y W + FS TW R P WAR VW
Sbjct: 861 ILSHLASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEVLRPRRPVKRWARSVW 915
Score = 47.0 bits (110), Expect(2) = 4e-13
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = -3
Query: 1235 KGHFSKVAFITWLAVRGGLATQDKLTQWRIIERMSCVLSRSQVEDNNHLFFSCDFIALIW 1056
KG K AF W A L T+ +L W ++ C L E +HL CDF + +W
Sbjct: 917 KGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCDFSSQVW 976
Query: 1055 KQV 1047
+ V
Sbjct: 977 RMV 979
>ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204314 [Cucumis sativus]
Length = 282
Score = 56.6 bits (135), Expect(2) = 5e-13
Identities = 26/65 (40%), Positives = 38/65 (58%)
Frame = -3
Query: 1238 GKGHFSKVAFITWLAVRGGLATQDKLTQWRIIERMSCVLSRSQVEDNNHLFFSCDFIALI 1059
G G+ K +F WLA+R L T+ +L++W +SC+L E +HLFFSC F I
Sbjct: 132 GGGNIPKHSFCAWLAIRDRLGTRGRLSRWDRSIPLSCLLCGGNYESRDHLFFSCHFGWEI 191
Query: 1058 WKQVL 1044
W ++L
Sbjct: 192 WSRIL 196
Score = 46.2 bits (108), Expect(2) = 5e-13
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Frame = -2
Query: 1515 GSLCGRVSTRIIYDFASSLDAKVCSVIFNGG---WK*LXXXSNVVLEVIDNCSVAPNVNV 1345
G + + R+IYD S DA++ + G W + + + + ++P+V
Sbjct: 37 GPIIQQFGERVIYDAGSRWDARLVDFMGRDGDWRWPLVYLDLMDIWDRVQGVRLSPSV-- 94
Query: 1344 EEMYVWLP-TNSTFSIQSTWNCFRGLIPKVDWARLVWQG 1231
E+ +VW+P ++ +FSI S W R +V W+ L+W G
Sbjct: 95 EDRWVWVPGSHDSFSITSAWETIRPHSSRVGWSGLLWGG 133
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 55.1 bits (131), Expect(2) = 9e-13
Identities = 47/175 (26%), Positives = 68/175 (38%), Gaps = 10/175 (5%)
Frame = -2
Query: 1731 IWRIVTKEESN*VKWI-FFRLKYKSFWAVRCFQDCPWYLRKILKIRGRFFGLVKCCIGDG 1555
IW + ++ S +W RL + SFW V Q PW + +L +R +K +G+G
Sbjct: 744 IWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNG 803
Query: 1554 NKVFLWCHN*HLLGSL---CGRVSTRIIYDFASSLDAKVCSVIFNGGWK*LXXXSNVVLE 1384
V W LG L G V +R AKV I GW+ S
Sbjct: 804 GTVSFWFDCWTSLGPLIKYLGDVGSR---PLRIPFSAKVADAIDGSGWRLPLSRSLTADS 860
Query: 1383 VIDNCSVAP---NVNVEEMYVWLPTN---STFSIQSTWNCFRGLIPKVDWARLVW 1237
++ + + P + V + Y W + FS TW R P WA+ VW
Sbjct: 861 ILSHLASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEVLRPRRPVKRWAKSVW 915
Score = 47.0 bits (110), Expect(2) = 9e-13
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = -3
Query: 1235 KGHFSKVAFITWLAVRGGLATQDKLTQWRIIERMSCVLSRSQVEDNNHLFFSCDFIALIW 1056
KG K AF W A L T+ +L W ++ C L E +HL CDF + +W
Sbjct: 917 KGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCDFSSQVW 976
Query: 1055 KQV 1047
+ V
Sbjct: 977 RMV 979
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 61.6 bits (148), Expect(2) = 1e-12
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Frame = -3
Query: 1220 KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLSRSQVEDNNHLFFSCDFIALIW----- 1056
K +F+TWLA L T DK+ +W R CV ++E +HLFFSC + + +W
Sbjct: 1215 KYSFVTWLAFHNRLTTSDKICKWNSGARYDCVFCGEELETRDHLFFSCPYSSHVWFSLTK 1274
Query: 1055 -----KQVLRWSLIAVDLVD 1011
+ +L W+LI L+D
Sbjct: 1275 GLLNGRNILNWNLITPHLLD 1294
Score = 40.0 bits (92), Expect(2) = 1e-12
Identities = 45/174 (25%), Positives = 70/174 (40%), Gaps = 7/174 (4%)
Frame = -2
Query: 1737 KHIWRIVTKEESN*VKWIFFRL-KYKSFWAVRCFQDC-PWYLRKILKIRGRFFGLVKCCI 1564
K IWRI++ +S VKW+ L + ++FW+V+ W RKILK R + + +
Sbjct: 1036 KLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEV 1095
Query: 1563 GDGNKVFLWCHN*HLLGSLCGRVSTRIIYDFASSLDAKVCSVIFNGGWK*-LXXXSNVVL 1387
G W + LG L + +R D +A V V+ K N +
Sbjct: 1096 RSGTFTSFWHDHWCPLGRLHQHMGSRGTIDLGIPNNATVAEVMNTHRRKRHRADFLNQIK 1155
Query: 1386 EVIDNCSVAPNVNVEEMYVWLPTNSTF----SIQSTWNCFRGLIPKVDWARLVW 1237
I+ + + + +W TF S TW R + + DW R VW
Sbjct: 1156 SQIELARQDRSTDGDRS-LWKQKEDTFKSSFSSSKTWQQIRSISLRCDWYRGVW 1208
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 53.5 bits (127), Expect(2) = 1e-12
Identities = 52/178 (29%), Positives = 70/178 (39%), Gaps = 13/178 (7%)
Frame = -2
Query: 1731 IWRIVTKEESN*VKWIFFR-LKYKSFWAVRCFQDCPWYLRKILKIRGRFFGLVKCCIGDG 1555
IWR+ ++S W L SFWAV Q W +++L +R + C +G+G
Sbjct: 884 IWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNG 943
Query: 1554 NKVFLWCHN*HLLGSLCGRVSTRIIYDFASS-----LDAKVCSVIFNGGWK*LXXXSNVV 1390
K W N LG L RII D S L AKV S GW+ S
Sbjct: 944 LKADYWYDNWTSLGPL-----FRIIGDIGPSSLRVPLLAKVASAFSEDGWRLPVSRSAPA 998
Query: 1389 LEVIDN-CSV-APNVNVEEM--YVWLPTN---STFSIQSTWNCFRGLIPKVDWARLVW 1237
+ D+ C+V P+ E++ Y W FS TW R WA +W
Sbjct: 999 KGIHDHLCTVPVPSTAQEDVDRYEWSVNGFLCQGFSAAKTWEAIRPKATVKSWASSIW 1056
Score = 48.1 bits (113), Expect(2) = 1e-12
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = -3
Query: 1235 KGHFSKVAFITWLAVRGGLATQDKLTQWRIIERMSCVLSRSQVEDNNHLFFSCDFIALIW 1056
KG K AF W++ L T+ +L W I+ +CVL E +HL C+F A +W
Sbjct: 1058 KGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSDACVLCSFASESRDHLLLICEFSAQVW 1117
Query: 1055 KQVLR 1041
+ V R
Sbjct: 1118 RLVFR 1122
>ref|XP_004174148.1| PREDICTED: uncharacterized protein LOC101232502 [Cucumis sativus]
Length = 191
Score = 53.5 bits (127), Expect(2) = 4e-12
Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Frame = -2
Query: 1566 IGDGNKVFLWCHN*HLLGSLCGRVSTRIIYDFASSLDAKVCSVIF-NGGWK*LXXXSNVV 1390
+G+G K +W G++ + R+IYD S DA++ + +G W+ ++
Sbjct: 3 VGNGKKCRVWLDPWIQGGAIIQQFGERVIYDAGSQRDARLVDFMGQDGDWRCPLVSLDL- 61
Query: 1389 LEVIDNCS-VAPNVNVEEMYVWLPTN-STFSIQSTWNCFRGLIPKVDWARLVWQG 1231
+++ D V P+++VE+ +VW+P + +FSI S W R +V W+ L+W G
Sbjct: 62 MDIWDRIQGVWPSLSVEDRWVWVPGSLDSFSIASVWETIRPHSSRVGWSGLLWGG 116
Score = 46.6 bits (109), Expect(2) = 4e-12
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = -3
Query: 1238 GKGHFSKVAFITWLAVRGGLATQDKLTQWRIIERMSCVLSRSQVEDNNHLFF 1083
G G+ K +F WLA+R L T+D+L++W +SC+L E +HLFF
Sbjct: 115 GGGNIPKHSFYAWLAIRDMLGTRDRLSRWDRSIPLSCMLCGRNFESRDHLFF 166
>ref|XP_004305958.1| PREDICTED: uncharacterized protein LOC101308407 [Fragaria vesca
subsp. vesca]
Length = 177
Score = 78.6 bits (192), Expect = 8e-12
Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 3/171 (1%)
Frame = -2
Query: 1743 LGKHIWRIVTKEESN*VKWIFFR-LKYKSFWAVRCFQDCPWYLRKILKIRGRFFGLVKCC 1567
+ +HI ++T + S WI L+ KSFW V Q C W RK+LKIR +K
Sbjct: 1 MARHIRILLTDDSSLWSSWIKVNFLRDKSFWMVSTPQICSWNWRKLLKIRDFIRPSIKHI 60
Query: 1566 IGDGNKVFLWCHN*HLLGSLCGRVSTRIIYDFASSLDAKVCSVIFNGGWK*LXXXSNVVL 1387
IGDG + W H G L R+ + + +A V S++ W ++ +L
Sbjct: 61 IGDGKSTYFWHDYWHPFGPLLPRLGPGAMINSGIPSNALVSSIVKGESWCWPLSTNSAIL 120
Query: 1386 EVIDNC-SVAPNVNVEEMYVWLP-TNSTFSIQSTWNCFRGLIPKVDWARLV 1240
V N + PN + ++ +WLP T+ FS ST + P VDWA++V
Sbjct: 121 RVASNVEGLIPNSSCKDSCIWLPSTSGIFSTASTMDQIWIHHPVVDWAKIV 171
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 55.1 bits (131), Expect(2) = 3e-11
Identities = 23/77 (29%), Positives = 42/77 (54%)
Frame = -3
Query: 1220 KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLSRSQVEDNNHLFFSCDFIALIWKQVLR 1041
K +F+ WL V+ L+T D++ W + ++C L + E +HLFFSC + + +W+ + +
Sbjct: 1366 KYSFLLWLTVQNRLSTGDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYVWEALTQ 1425
Query: 1040 WSLIAVDLVDWDATFVV 990
L DW+ F +
Sbjct: 1426 RLLSTNYSRDWNRLFTL 1442
Score = 42.0 bits (97), Expect(2) = 3e-11
Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 7/177 (3%)
Frame = -2
Query: 1746 CLGKHIWRIVTKEESN*VKWIF-FRLKYKSFWAVRCFQDC-PWYLRKILKIRGRFFGLVK 1573
CL K IWR+++ + S V WI+ F ++ +FW+ W +K+LK R + K
Sbjct: 1184 CL-KLIWRLLSTQPSLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHK 1242
Query: 1572 CCIGDGNKVFLWCHN*HLLGSLCGRVSTRIIYDFASSLDAKVCSVIFNGGWK*-LXXXSN 1396
+ +G+ W + LG L TR + D L+ + +V+ + N
Sbjct: 1243 VEVRNGSSTSFWYDHWSHLGRLLDITGTRRVIDLGIPLETNLETVLRTHQHRQHRAAIYN 1302
Query: 1395 VVLEVIDNCSVAPNVNVEEMYVWLPT----NSTFSIQSTWNCFRGLIPKVDWARLVW 1237
+ I ++ +W N F + TWN R P+ +W + VW
Sbjct: 1303 RINAEIQRLQQQEREAGPDISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVW 1359
>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 637
Score = 62.0 bits (149), Expect(2) = 5e-11
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Frame = -3
Query: 1220 KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLSRSQVEDNNHLFFSCDFIALIW----- 1056
K +F+TWLA LAT D+L +W R +CV ++E +HLFFSC + + IW
Sbjct: 291 KYSFVTWLAFHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSSQIWIALAK 350
Query: 1055 -----KQVLRWSLIAVDLVD 1011
+ V WSLI L+D
Sbjct: 351 GLLNGRNVSSWSLITPHLLD 370
Score = 34.3 bits (77), Expect(2) = 5e-11
Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 8/175 (4%)
Frame = -2
Query: 1737 KHIWRIVTKEESN*VKWIFFRL-KYKSFWAVRCFQDC-PWYLRKILKIRGRFFGLVKCCI 1564
K+ +V+ ++S V+W++ L + ++FW+V+ W +KILK R + + +
Sbjct: 112 KYTVLVVSAKDSLWVQWVYKNLIRKETFWSVKENTSLGSWLWKKILKQRDKARLFHQMEV 171
Query: 1563 GDGNKVFLWCHN*HLLGSLCGRVSTRIIYDFASSLDAKVCSVIFNGGWK*LXXXSNVVLE 1384
G W + LG L + +R D + A V V+ K ++ + +
Sbjct: 172 RSGTTTSFWHDHWSPLGRLHQHLGSRGTIDLGIATQATVAEVLDTHRRK--RHRADFLNQ 229
Query: 1383 VIDNCSVAPNVNVEEM--YVWLPTNSTF----SIQSTWNCFRGLIPKVDWARLVW 1237
+ ++ + +E +W +F S TW R + + +W R VW
Sbjct: 230 IENHIELVRQARSQESDRSLWKQKEDSFKGSFSSPKTWQQIRTISNECEWYRGVW 284
>ref|XP_004173049.1| PREDICTED: putative ribonuclease H protein At1g65750-like, partial
[Cucumis sativus]
Length = 647
Score = 56.2 bits (134), Expect(2) = 1e-10
Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 5/174 (2%)
Frame = -2
Query: 1737 KHIWRIVTKEESN*VKWI-FFRLKYKSFWAVRCFQDCPWYLRKILKIRGRFFGLVKCCIG 1561
K +W ++ K S V W+ + LK +S W + W R IL+ R V+ +G
Sbjct: 341 KILWLLLVKSGSLWVAWVEAYILKGRSLWEIDAGAGRSWCFRAILRKRDILKAHVEMKLG 400
Query: 1560 DGNKVFLWCHN*HLLGSLCGRVSTRIIYDFASSLDAKVCSVIFNGG---WK*LXXXSNVV 1390
+ K + G + R+IYD S DA++ + G W + +
Sbjct: 401 NVRKCRMLLDAWIQGGMIIQLFGERVIYDAGSRRDARLMDFMGGDGDWRWSLVSLDLMDI 460
Query: 1389 LEVIDNCSVAPNVNVEEMYVWLPTN-STFSIQSTWNCFRGLIPKVDWARLVWQG 1231
++I ++P+V ++ +VW+ +FSI S W R +V W+ L+W G
Sbjct: 461 WDMIQGVRLSPSV--DDRWVWVSGRLDSFSIVSAWETIRPNSSRVGWSGLLWGG 512
Score = 38.9 bits (89), Expect(2) = 1e-10
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -3
Query: 1220 KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLSRSQVEDNNHL 1089
+V F WLA+R L T+D+L+ W +SC+L E +HL
Sbjct: 519 RVYFCAWLAIRDRLGTRDRLSWWDRFIPLSCMLCGGNYESRDHL 562
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 48.5 bits (114), Expect(2) = 1e-10
Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 9/179 (5%)
Frame = -2
Query: 1746 CLGKHIWRIVTKEESN*VKWIF-FRLKYKSFWAVRCFQDC-PWYLRKILKIRGRFFGLVK 1573
CL K +WRI++ S KW+ + ++ KS W+++ W RKILKIR +
Sbjct: 534 CL-KLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKSFSR 592
Query: 1572 CCIGDGNKVFLWCHN*HLLGSLCGRVSTRIIYDFASSLDAKVCSVIFNGGWK*LXXXSNV 1393
+G+G W + G L V + D +A V +
Sbjct: 593 VEVGNGESASFWYDHWSAHGRLIDTVGDKGTIDLGIPREASVADAWTRRSRR---RHRTS 649
Query: 1392 VLEVIDNCSVAPNV---NVEEMYVWLPTNST----FSIQSTWNCFRGLIPKVDWARLVW 1237
+L I+ + + E+ +W N FS + TW+ + V W + VW
Sbjct: 650 LLNEIEEMMAYQRIHHSDAEDTVLWRGKNDVFKPHFSTRDTWHLIKATSSTVSWHKGVW 708
Score = 46.2 bits (108), Expect(2) = 1e-10
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -3
Query: 1220 KVAFITWLAVRGGLATQDKLTQWRIIERMS--CVLSRSQVEDNNHLFFSCDFIALIW 1056
K A TWLA+ L T D++ +W +S CVL + + HLFFSC + + +W
Sbjct: 715 KYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSCSYASTVW 771
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 50.4 bits (119), Expect(2) = 2e-10
Identities = 23/71 (32%), Positives = 35/71 (49%)
Frame = -3
Query: 1220 KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLSRSQVEDNNHLFFSCDFIALIWKQVLR 1041
K F TWLA+R L+T ++ W + C + +E +HLFFSC + + IW + +
Sbjct: 474 KYQFCTWLALRNRLSTGYRMQLWNNGSDVKCTFCSTSIETRDHLFFSCSYASAIWTAIAK 533
Query: 1040 WSLIAVDLVDW 1008
L DW
Sbjct: 534 NVLQHRFSTDW 544
Score = 43.5 bits (101), Expect(2) = 2e-10
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 7/174 (4%)
Frame = -2
Query: 1737 KHIWRIVTKEESN*VKWIFFRL-KYKSFWAVRCFQDC-PWYLRKILKIRGRFFGLVKCCI 1564
K IWR+ + ++S VKW L K +SFW++ W +K+LK R + +
Sbjct: 294 KLIWRVTSNDDSLWVKWSKMNLLKQESFWSLTPNSSLGSWMWKKMLKYRETAKPFSRVEV 353
Query: 1563 GDGNKVFLWCHN*HLLGSLCGRVSTRIIYDFASSLDAKVCSVIFNGGW-K*LXXXSNVVL 1387
+G + W N +G L R D S + V N K N +
Sbjct: 354 NNGARTSFWFDNWSGMGHLMDVTGQRGQIDLGISRNKTVAEAWSNRRRRKHRTEQLNDIE 413
Query: 1386 EVIDNCSVAPNVNVEEMYVWLPTN----STFSIQSTWNCFRGLIPKVDWARLVW 1237
++ N+ E+ +W ++FS + TWN R +V W + VW
Sbjct: 414 AALNQKYQTRNLLREDATLWRGKGDVFKTSFSTKDTWNQVRKKSNEVAWYKGVW 467
>ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcriptase)-related protein
[Arabidopsis thaliana] gi|332195602|gb|AEE33723.1|
RNA-directed DNA polymerase (reverse
transcriptase)-related protein [Arabidopsis thaliana]
Length = 289
Score = 50.8 bits (120), Expect(2) = 3e-10
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = -3
Query: 1235 KGHFSKVAFITWLAVRGGLATQDKLTQWRIIERMSCVLSRSQVEDNNHLFFSCDFIALIW 1056
KG K AF W++ L T+ +L W I+ C L + E +HL FSC+F A +W
Sbjct: 134 KGAVPKHAFNMWISQLDRLPTRQRLASWGHIQSFDCCLCTIETESRDHLLFSCEFAAQVW 193
Query: 1055 K 1053
+
Sbjct: 194 R 194
Score = 42.7 bits (99), Expect(2) = 3e-10
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Frame = -2
Query: 1578 VKCCIGDGNKVFLWCHN*HLLGSLCGRVSTRIIYDFASS-----LDAKVCSVIFNGGWK* 1414
VKC +G+G W + LG L +++ D+ S L+A+V + GWK
Sbjct: 13 VKCNLGNGRIAHFWHDSWTSLGPLI-----KVMGDYGSRSLRIPLNARVVEALGVNGWKL 67
Query: 1413 LXXXSNVVLEVIDNCSVAPN---VNVEEMYVWLPTNST---FSIQSTWNCFRGLIPKVDW 1252
S + D+ S +E+ + W+ FS TW+ R P++DW
Sbjct: 68 PLSRSAPAQAIHDHISTITTPSPATIEDSFDWVVGGVVCQGFSSARTWDAIRPRAPELDW 127
Query: 1251 ARLVW 1237
A+ VW
Sbjct: 128 AKAVW 132
>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 53.5 bits (127), Expect(2) = 5e-10
Identities = 55/178 (30%), Positives = 73/178 (41%), Gaps = 8/178 (4%)
Frame = -2
Query: 1746 CLGKHIWRIVTKEESN*VKWIFFRLKYKSF-WAVRCFQDC-PWYLRKILKIRGRFFGLVK 1573
C K IWRI++ +S VKWI L K F WAVR W RKILK R L K
Sbjct: 216 CCLKLIWRIISHADSLWVKWIQSSLLKKVFFWAVRENTSLGSWMWRKILKFRDIARTLCK 275
Query: 1572 CCIGDGNKVFLWCHN*HLLGSLCGRVSTRIIYDFASSLDAKVCSVIFNGGWK*LXXXSNV 1393
I +G + W + LG L R D + A V G + +N
Sbjct: 276 VEINNGAQTSFWYDDWSDLGRLIESAGDRGAIDLGINKHATVVEAW--GNRRRRRHRANF 333
Query: 1392 VLEVIDNCSVAPNVN--VEEMYVWLPTN----STFSIQSTWNCFRGLIPKVDWARLVW 1237
+ V + ++ N E+ +W S FS + TWN R + KV W + VW
Sbjct: 334 LNRVEERLVLSWNSRNQAEDCALWKGKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVW 391
Score = 39.3 bits (90), Expect(2) = 5e-10
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -3
Query: 1220 KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLSRSQVEDNNHL 1089
K AF WLAV L+T D++T W + +C+L + +E +HL
Sbjct: 398 KHAFCMWLAVHNRLSTGDRMTLWNMGVDATCILCNNALESRDHL 441
>dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana] gi|93007380|gb|ABE97193.1| hypothetical protein
At5g13655 [Arabidopsis thaliana]
Length = 385
Score = 49.7 bits (117), Expect(2) = 5e-10
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = -3
Query: 1220 KVAFITWLAVRGGLATQDKLTQWRIIERMSCVLSRSQVEDNNHLFFSCDFIALIWKQVLR 1041
K A +TWL VR +AT +K+ W SC+ ++ E HLFF C + +W +++
Sbjct: 228 KYALLTWLMVRNRIATGEKMGLWNQNTDTSCIFCKNPNETREHLFFQCVYTRKVWNGLIK 287
Query: 1040 WSLI 1029
L+
Sbjct: 288 GLLL 291
Score = 43.1 bits (100), Expect(2) = 5e-10
Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 7/177 (3%)
Frame = -2
Query: 1746 CLGKHIWRIVTKEESN*VKWI-FFRLKYKSFWAVR-CFQDCPWYLRKILKIRGRFFGLVK 1573
C+ K IWRI++ + S V W+ L+ S WAV+ W +K+LK R + K
Sbjct: 45 CMLKLIWRILSAKGSLWVDWVKKHLLRGGSLWAVKETSSRGSWIWKKLLKYRDKAKCFHK 104
Query: 1572 CCIGDGNKVFLWCHN*HLLGSLCGRVSTRIIYDFASSLDAKVCSVIF-NGGWK*LXXXSN 1396
+ +G W + LG L + R D D+ + S I K N
Sbjct: 105 VDVRNGESTSFWYDSWSSLGCLYDKFGERGCIDMGIPKDSTLSSAIMTTRRRKHRQPLLN 164
Query: 1395 VVLEVIDNCSVAPNVNVEEMYVWLPT----NSTFSIQSTWNCFRGLIPKVDWARLVW 1237
V I + V ++ +W + TF + TW+ R P++ R +W
Sbjct: 165 AVETEIQKQKQSRIVTERDVALWKGKEDGFHPTFLSKETWSQIRNTQPEMQGYRGIW 221