BLASTX nr result
ID: Paeonia22_contig00046011
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia22_contig00046011
(372 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFB73912.1| polyprotein [Citrus sinensis] 86 1e-33
gb|AFB73911.1| polyprotein [Citrus sinensis] 79 2e-32
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 78 1e-27
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 78 3e-27
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 78 3e-27
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 77 6e-27
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 69 4e-25
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 65 2e-21
emb|CAN62092.1| hypothetical protein VITISV_022473 [Vitis vinifera] 55 2e-13
emb|CAN66775.1| hypothetical protein VITISV_035302 [Vitis vinifera] 52 3e-13
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu... 45 2e-12
gb|AAC12735.1| putative retrovirus-related polyprotein [Lithospe... 54 2e-12
emb|CAN68884.1| hypothetical protein VITISV_039230 [Vitis vinifera] 64 2e-11
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 47 3e-10
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote... 46 3e-10
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc... 46 3e-10
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 46 5e-10
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 46 5e-10
emb|CAN66075.1| hypothetical protein VITISV_026161 [Vitis vinifera] 68 1e-09
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 47 1e-09
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 85.5 bits (210), Expect(3) = 1e-33
Identities = 39/52 (75%), Positives = 48/52 (92%)
Frame = +1
Query: 7 TVRTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMKGKK 162
T+RTI++VRH+ GLKKNLLS+GQ+DS GCKTHVENGIMKI+K ALV+MK +K
Sbjct: 344 TIRTIEEVRHVNGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLMKAEK 395
Score = 55.8 bits (133), Expect(3) = 1e-33
Identities = 25/33 (75%), Positives = 29/33 (87%)
Frame = +3
Query: 273 KILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKF 371
KILS++KL PG KSV+ PFCEHCVT KQ+RLKF
Sbjct: 439 KILSERKLPPGLKSVSLPFCEHCVTSKQHRLKF 471
Score = 48.1 bits (113), Expect(3) = 1e-33
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +2
Query: 197 DACVASTSKEEESTMMWHLKLGHMSEDSLR 286
DACVAS EESTMMWHLKLGHMSE L+
Sbjct: 412 DACVASNG--EESTMMWHLKLGHMSEQGLK 439
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 78.6 bits (192), Expect(3) = 2e-32
Identities = 38/52 (73%), Positives = 46/52 (88%)
Frame = +1
Query: 7 TVRTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMKGKK 162
T+RTI +VRH+ GLKKNLLS+GQ+DS G KTHVENGIMKI+K ALV+MK +K
Sbjct: 344 TIRTIGEVRHVNGLKKNLLSLGQMDSHGYKTHVENGIMKIVKGALVLMKVEK 395
Score = 58.5 bits (140), Expect(3) = 2e-32
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = +3
Query: 273 KILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKF 371
KILS++KLLPG KSV+ PFCEHCVT KQ+RLKF
Sbjct: 439 KILSERKLLPGLKSVSLPFCEHCVTSKQHRLKF 471
Score = 48.1 bits (113), Expect(3) = 2e-32
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +2
Query: 197 DACVASTSKEEESTMMWHLKLGHMSEDSLR 286
DACVAS EESTMMWHLKLGHMSE L+
Sbjct: 412 DACVASNG--EESTMMWHLKLGHMSEQGLK 439
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 78.2 bits (191), Expect(3) = 1e-27
Identities = 36/52 (69%), Positives = 44/52 (84%)
Frame = +1
Query: 7 TVRTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMKGKK 162
TVR IQ VRH+KGLKKNLLS+GQ+D LGCK H E+GI+K++K LVVMK +K
Sbjct: 343 TVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEK 394
Score = 50.1 bits (118), Expect(3) = 1e-27
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = +3
Query: 273 KILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKF 371
K+L+++ LL G K+VN PFCEHCV KQ+RLKF
Sbjct: 439 KVLAERNLLHGLKAVNLPFCEHCVISKQHRLKF 471
Score = 40.8 bits (94), Expect(3) = 1e-27
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = +2
Query: 197 DACVASTSKEEESTMMWHLKLGHMSEDSLR 286
DA VA++S +EE+TMMWH +LGHMSE L+
Sbjct: 411 DASVAASS-QEETTMMWHQRLGHMSERGLK 439
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 78.2 bits (191), Expect(3) = 3e-27
Identities = 36/52 (69%), Positives = 44/52 (84%)
Frame = +1
Query: 7 TVRTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMKGKK 162
TVR IQ VRH+KGLKKNLLS+GQ+D LGCK H E+GI+K++K LVVMK +K
Sbjct: 343 TVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEK 394
Score = 48.9 bits (115), Expect(3) = 3e-27
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = +3
Query: 273 KILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKF 371
K+L ++ LL G K+VN PFCEHCV KQ+RLKF
Sbjct: 439 KVLVERNLLHGLKTVNLPFCEHCVMSKQHRLKF 471
Score = 40.4 bits (93), Expect(3) = 3e-27
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +2
Query: 197 DACVASTSKEEESTMMWHLKLGHMSEDSLR 286
DA VA+ S +EE+TMMWH +LGHMSE L+
Sbjct: 411 DASVAAAS-QEETTMMWHQRLGHMSERGLK 439
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 78.2 bits (191), Expect(3) = 3e-27
Identities = 36/52 (69%), Positives = 44/52 (84%)
Frame = +1
Query: 7 TVRTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMKGKK 162
TVR IQ VRH+KGLKKNLLS+GQ+D LGCK H E+GI+K++K LVVMK +K
Sbjct: 343 TVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEK 394
Score = 48.9 bits (115), Expect(3) = 3e-27
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = +3
Query: 273 KILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKF 371
K+L ++ LL G K+VN PFCEHCV KQ+RLKF
Sbjct: 439 KVLVERNLLHGLKTVNLPFCEHCVISKQHRLKF 471
Score = 40.4 bits (93), Expect(3) = 3e-27
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +2
Query: 197 DACVASTSKEEESTMMWHLKLGHMSEDSLR 286
DA VA+ S +EE+TMMWH +LGHMSE L+
Sbjct: 411 DASVAAAS-QEETTMMWHQRLGHMSERGLK 439
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 77.4 bits (189), Expect(3) = 6e-27
Identities = 36/52 (69%), Positives = 44/52 (84%)
Frame = +1
Query: 7 TVRTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMKGKK 162
TVR IQ VRH+KGLKKNLLS+GQ+D LGCK H E+GI+K++K LVVMK +K
Sbjct: 343 TVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKAEK 394
Score = 48.9 bits (115), Expect(3) = 6e-27
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = +3
Query: 273 KILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKF 371
K+L ++ LL G K+VN PFCEHCV KQ+RLKF
Sbjct: 439 KVLVERNLLHGLKTVNLPFCEHCVISKQHRLKF 471
Score = 40.4 bits (93), Expect(3) = 6e-27
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +2
Query: 197 DACVASTSKEEESTMMWHLKLGHMSEDSLR 286
DA VA+ S +EE+TMMWH +LGHMSE L+
Sbjct: 411 DASVAAAS-QEETTMMWHQRLGHMSERGLK 439
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 69.3 bits (168), Expect(3) = 4e-25
Identities = 31/52 (59%), Positives = 43/52 (82%)
Frame = +1
Query: 7 TVRTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMKGKK 162
T+RT+Q+VRH+K L KNLLS+GQ+D LG K ++ GI+K++K +LVVMK KK
Sbjct: 343 TIRTLQEVRHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKK 394
Score = 52.0 bits (123), Expect(3) = 4e-25
Identities = 21/33 (63%), Positives = 28/33 (84%)
Frame = +3
Query: 273 KILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKF 371
K+L+++ L+PG KSV+ PFCEHCV KQ+RLKF
Sbjct: 439 KVLAERNLIPGLKSVSLPFCEHCVISKQHRLKF 471
Score = 39.3 bits (90), Expect(3) = 4e-25
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Frame = +2
Query: 152 KAKKTSSNHA*EINN-----DACVASTSKEEESTMMWHLKLGHMSEDSLR 286
KAKK ++N + + DA VA S +EE+TMMWH +LGHMSE L+
Sbjct: 391 KAKKVAANLYMLLGDTWQMADASVAVGS-QEETTMMWHRRLGHMSERGLK 439
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 64.7 bits (156), Expect(3) = 2e-21
Identities = 30/52 (57%), Positives = 40/52 (76%)
Frame = +1
Query: 7 TVRTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMKGKK 162
TV+T+Q VRH+KGLKKNLLS G +D+ + + G+MKI + ALVVMKG+K
Sbjct: 334 TVQTVQDVRHVKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALVVMKGEK 385
Score = 50.4 bits (119), Expect(3) = 2e-21
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = +3
Query: 273 KILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKF 371
KIL +QKL+PG V+ P CEHC+T KQ+RLKF
Sbjct: 429 KILVEQKLIPGLTKVSLPLCEHCITSKQHRLKF 461
Score = 32.7 bits (73), Expect(3) = 2e-21
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +2
Query: 197 DACVASTSKEEESTMMWHLKLGHMSEDSLR 286
+A VA+ S + ST++WH KLGHMS+ ++
Sbjct: 402 EASVAACSPD--STLLWHQKLGHMSDQGMK 429
>emb|CAN62092.1| hypothetical protein VITISV_022473 [Vitis vinifera]
Length = 318
Score = 54.7 bits (130), Expect(3) = 2e-13
Identities = 25/51 (49%), Positives = 35/51 (68%)
Frame = +1
Query: 10 VRTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMKGKK 162
+ T+ +RH+ LKK L+S+G +DS GC G+++ILK ALVVMKG K
Sbjct: 80 IMTLIDLRHVPKLKKKLISLGTLDSNGCTYKAGGGVLRILKGALVVMKGNK 130
Score = 35.4 bits (80), Expect(3) = 2e-13
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +3
Query: 276 ILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKF 371
ILS + LL G K+ FCEHCV KQ R+KF
Sbjct: 175 ILSKRGLLDGQKTGELDFCEHCVFGKQCRVKF 206
Score = 30.4 bits (67), Expect(3) = 2e-13
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 230 ESTMMWHLKLGHMSEDSL 283
E+T +WH++LGHMS+ L
Sbjct: 156 ETTRLWHMRLGHMSDKGL 173
>emb|CAN66775.1| hypothetical protein VITISV_035302 [Vitis vinifera]
Length = 734
Score = 52.0 bits (123), Expect(3) = 3e-13
Identities = 25/50 (50%), Positives = 34/50 (68%)
Frame = +1
Query: 13 RTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMKGKK 162
RT+ +RH+ LKK L+S+G +DS C G+++I K ALVVMKGKK
Sbjct: 135 RTLTDLRHVPKLKKILISLGTLDSNKCTYKAGGGVLRISKGALVVMKGKK 184
Score = 35.0 bits (79), Expect(3) = 3e-13
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +3
Query: 276 ILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKF 371
ILS + LL G K+ FCEHCV KQ R+KF
Sbjct: 229 ILSKRGLLDGQKTGELNFCEHCVFGKQCRVKF 260
Score = 32.7 bits (73), Expect(3) = 3e-13
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 200 ACVASTSKEE-ESTMMWHLKLGHMSEDSL 283
A V STS+ E+T +WH+ LGHMSE L
Sbjct: 199 AIVVSTSESIIETTRLWHMXLGHMSEKGL 227
>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 867
Score = 45.4 bits (106), Expect(3) = 2e-12
Identities = 23/52 (44%), Positives = 36/52 (69%)
Frame = +1
Query: 1 GSTVRTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMKG 156
GST R ++ VR++ LKKNL+S+G ++S G + +GI+K ALV++KG
Sbjct: 276 GST-RILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATSGALVMLKG 326
Score = 36.2 bits (82), Expect(3) = 2e-12
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +3
Query: 273 KILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKF 371
+I + Q LL G K+ FCEHCV KQ R+KF
Sbjct: 374 QIFTKQGLLKGTKACKLEFCEHCVLGKQRRVKF 406
Score = 35.8 bits (81), Expect(3) = 2e-12
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 200 ACVASTSKEEESTMMWHLKLGHMSEDSLR 286
A +S+ K+ E+T +WH++LGH E SL+
Sbjct: 346 AATSSSKKDAEATKLWHMRLGHAGEKSLQ 374
>gb|AAC12735.1| putative retrovirus-related polyprotein [Lithospermum
erythrorhizon]
Length = 244
Score = 53.5 bits (127), Expect(3) = 2e-12
Identities = 23/50 (46%), Positives = 38/50 (76%)
Frame = +1
Query: 7 TVRTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMKG 156
T+ T+ VRHI+ L KNL+S+ ++ GCK +E+G++K+++ +LVVMKG
Sbjct: 27 TIITLNDVRHIQDLHKNLISLRLLEKNGCKIVLEDGVLKVVRRSLVVMKG 76
Score = 33.5 bits (75), Expect(3) = 2e-12
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 206 VASTSKEEESTMMWHLKLGHMSEDSL 283
V + E TM+WH++LGHMSE L
Sbjct: 98 VVGHKDQTECTMIWHMRLGHMSEKGL 123
Score = 30.0 bits (66), Expect(3) = 2e-12
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 276 ILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKF 371
+LS Q LL K FCEH V K +RLKF
Sbjct: 125 LLSGQGLLKNMKKSCMEFCEHWVYGKTHRLKF 156
>emb|CAN68884.1| hypothetical protein VITISV_039230 [Vitis vinifera]
Length = 220
Score = 63.5 bits (153), Expect(2) = 2e-11
Identities = 29/51 (56%), Positives = 38/51 (74%)
Frame = +1
Query: 10 VRTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMKGKK 162
+RT+ VRH+ LKKNL+S+G +DS GC E G+++I K ALVVMKGKK
Sbjct: 122 IRTLTDVRHVPKLKKNLISLGTLDSNGCTYKAEGGVLRISKGALVVMKGKK 172
Score = 30.4 bits (67), Expect(2) = 2e-11
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 206 VASTSKEE-ESTMMWHLKLGHMSEDSL 283
V STSK E+T ++H++LGHMSE L
Sbjct: 189 VVSTSKSIIETTRLFHIRLGHMSEKGL 215
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 46.6 bits (109), Expect(3) = 3e-10
Identities = 20/51 (39%), Positives = 35/51 (68%)
Frame = +1
Query: 13 RTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMKGKKN 165
RT++ VR+I G+ +NL+S+ +D+ G K +G++K+ K +LV +KG N
Sbjct: 347 RTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLN 397
Score = 32.3 bits (72), Expect(3) = 3e-10
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 191 NNDACVASTSKEEESTMMWHLKLGHMS 271
++ A A T+ E T +WH++LGHMS
Sbjct: 412 SDSAAAAVTNDEPSKTNLWHMRLGHMS 438
Score = 30.4 bits (67), Expect(3) = 3e-10
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 279 LSDQKLLPGFKSVN*PFCEHCVTRKQYRLKF 371
L + LL G+ S FCEHC+ K R++F
Sbjct: 445 LMKRNLLKGYTSSKIKFCEHCIFGKHKRVQF 475
>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
Group] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa Japonica Group]
gi|31431214|gb|AAP53029.1| retrotransposon protein,
putative, Ty1-copia subclass, expressed [Oryza sativa
Japonica Group]
Length = 1229
Score = 45.8 bits (107), Expect(3) = 3e-10
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = +1
Query: 13 RTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMKGKKN 165
RT++ VRHI G+ +NL+S+ +D+ G K G++K+ K +LV M G N
Sbjct: 344 RTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMN 394
Score = 32.7 bits (73), Expect(3) = 3e-10
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 188 INNDACVASTSKEEES-TMMWHLKLGHMSE 274
++ A+ SK+E S T +WH++LGHMSE
Sbjct: 406 LHGSLTAAAVSKDEPSKTNLWHMRLGHMSE 435
Score = 30.8 bits (68), Expect(3) = 3e-10
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +3
Query: 279 LSDQKLLPGFKSVN*PFCEHCVTRKQYRLKF 371
L + LL G N FCEHCV K R+KF
Sbjct: 441 LMKRNLLDGCTQGNMKFCEHCVFGKHKRVKF 471
>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1156
Score = 45.8 bits (107), Expect(3) = 3e-10
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = +1
Query: 13 RTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMKGKKN 165
RT++ VRHI G+ +NL+S+ +D+ G K G++K+ K +LV M G N
Sbjct: 287 RTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMN 337
Score = 32.7 bits (73), Expect(3) = 3e-10
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 188 INNDACVASTSKEEES-TMMWHLKLGHMSE 274
++ A+ SK+E S T +WH++LGHMSE
Sbjct: 349 LHGSITAAAVSKDEPSKTNLWHMRLGHMSE 378
Score = 30.8 bits (68), Expect(3) = 3e-10
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +3
Query: 279 LSDQKLLPGFKSVN*PFCEHCVTRKQYRLKF 371
L + LL G N FCEHCV K R+KF
Sbjct: 384 LMKRNLLDGCTQGNMKFCEHCVFGKHKRVKF 414
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 45.8 bits (107), Expect(3) = 5e-10
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = +1
Query: 13 RTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMKGKKN 165
RT++ VRHI G+ +NL+S+ +D+ G K G++K+ K +LV M G N
Sbjct: 347 RTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMN 397
Score = 32.0 bits (71), Expect(3) = 5e-10
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 188 INNDACVASTSKEEES-TMMWHLKLGHMSE 274
++ A+ +K+E S T +WH++LGHMSE
Sbjct: 409 LHGSVTAAAVTKDEPSKTNLWHMRLGHMSE 438
Score = 30.8 bits (68), Expect(3) = 5e-10
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +3
Query: 279 LSDQKLLPGFKSVN*PFCEHCVTRKQYRLKF 371
L + LL G N FCEHCV K R+KF
Sbjct: 444 LMKRNLLDGCTQGNMKFCEHCVFGKHKRVKF 474
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 45.8 bits (107), Expect(3) = 5e-10
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +1
Query: 10 VRTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMK 153
+RT+ VRHI LK++L+S+ +D G K +GI+K+ K +LVVMK
Sbjct: 353 IRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 400
Score = 33.9 bits (76), Expect(3) = 5e-10
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 188 INNDACVASTSKEEESTMMWHLKLGHMSEDSL 283
+ N A V+ + ++T +WH++LGHMSE L
Sbjct: 417 LGNVATVSDSLSNSDATNLWHMRLGHMSEIGL 448
Score = 28.9 bits (63), Expect(3) = 5e-10
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 279 LSDQKLLPGFKSVN*PFCEHCVTRKQYRLKF 371
LS + LL G FCEHC+ K R+KF
Sbjct: 451 LSKRGLLDGQSISKLKFCEHCIFGKHKRVKF 481
>emb|CAN66075.1| hypothetical protein VITISV_026161 [Vitis vinifera]
Length = 277
Score = 68.2 bits (165), Expect = 1e-09
Identities = 31/51 (60%), Positives = 41/51 (80%)
Frame = +1
Query: 10 VRTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMKGKK 162
+RTI KVRH+KGLKKN+LSMGQ+D L + HV+ GIMK+++ VVMK +K
Sbjct: 24 IRTIPKVRHVKGLKKNMLSMGQLDDLRYEFHVKRGIMKVIRGTFVVMKVEK 74
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 46.6 bits (109), Expect(3) = 1e-09
Identities = 20/51 (39%), Positives = 35/51 (68%)
Frame = +1
Query: 13 RTIQKVRHIKGLKKNLLSMGQIDSLGCKTHVENGIMKILKDALVVMKGKKN 165
RT++ VR+I G+ +NL+S+ +D+ G K +G++K+ K +LV +KG N
Sbjct: 345 RTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVN 395
Score = 32.3 bits (72), Expect(3) = 1e-09
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 191 NNDACVASTSKEEESTMMWHLKLGHMS 271
++ A A T+ E T +WH++LGHMS
Sbjct: 410 SDSAAAAITNDEPSKTNLWHMRLGHMS 436
Score = 28.5 bits (62), Expect(3) = 1e-09
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 279 LSDQKLLPGFKSVN*PFCEHCVTRKQYRLKF 371
L + LL G S FCEHC+ K R++F
Sbjct: 443 LMKRNLLKGCTSSKIKFCEHCIFGKHKRVQF 473