BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00041424
         (582 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204...   122   5e-26
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   122   9e-26
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678...   121   2e-25
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   119   6e-25
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta...   118   1e-24
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   114   1e-23
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...   111   1e-22
gb|ABE65413.1| hypothetical protein At1g62890 [Arabidopsis thali...   109   5e-22
gb|ABK28152.1| unknown [Arabidopsis thaliana]                         109   5e-22
ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, part...   108   8e-22
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]              108   1e-21
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]             107   3e-21
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]           106   4e-21
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta...   105   7e-21
ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcript...   105   9e-21
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   104   2e-20
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ...   103   3e-20
dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidop...   103   3e-20
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           102   1e-19
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   101   1e-19

>ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204314 [Cucumis sativus]
          Length = 282

 Score =  122 bits (307), Expect = 5e-26
 Identities = 68/186 (36%), Positives = 92/186 (49%)
 Frame = +3

Query: 3   VSNSLEPDKVTWDLTLDKKFSIHSLWNFIRHKSGEVEWSHFVWFPKAIKKHAFCLWLAIR 182
           +S S+E D+  W       FSI S W  IR  S  V WS  +W    I KH+FC WLAIR
Sbjct: 90  LSPSVE-DRWVWVPGSHDSFSITSAWETIRPHSSRVGWSGLLWGGGNIPKHSFCAWLAIR 148

Query: 183 GALTTQDRIRGWGVSASNRCYLCGSDEETRDHLFFACELSSSIWTDILRLCLITGGVRTW 362
             L T+ R+  W  S    C LCG + E+RDHLFF+C     IW+ IL L   +     W
Sbjct: 149 DRLGTRGRLSRWDRSIPLSCLLCGGNYESRDHLFFSCHFGWEIWSRILLLKSSSHRTGYW 208

Query: 363 NDTMIWATNSLKHSSFANWVRRLALAASVYVLWRERNERYHNNKCKDKRALVVFIRDQVR 542
              + W  N     S    + RL   A++Y +W+ERN R H    ++   +   IR  ++
Sbjct: 209 GVELSWIYNQGIGKSVRRKLWRLLWCATIYFIWQERNHRLHGGSIREPLVVFQLIRSCIK 268

Query: 543 FRVASF 560
            R AS+
Sbjct: 269 VRAASW 274


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  122 bits (305), Expect = 9e-26
 Identities = 66/181 (36%), Positives = 87/181 (48%), Gaps = 3/181 (1%)
 Frame = +3

Query: 24   DKVTWDLTLD---KKFSIHSLWNFIRHKSGEVEWSHFVWFPKAIKKHAFCLWLAIRGALT 194
            DKV W    D     FS    W+  R  S  V W   +WF  A  K++FC WLA  G L 
Sbjct: 1023 DKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLP 1082

Query: 195  TQDRIRGWGVSASNRCYLCGSDEETRDHLFFACELSSSIWTDILRLCLITGGVRTWNDTM 374
            T DR+  W    +  C  C    ETRDHLFF C  +S IW D+ R    T     W   +
Sbjct: 1083 TGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIWVDLARGIFKTQYTSHWQSII 1142

Query: 375  IWATNSLKHSSFANWVRRLALAASVYVLWRERNERYHNNKCKDKRALVVFIRDQVRFRVA 554
               TNS +H     ++RR    A++Y++WRERN R H         LV +I  Q+R +++
Sbjct: 1143 EAITNS-QHHRVEWFLRRYVFQATIYIVWRERNGRRHGEPPNTASQLVGWIDKQIRNQLS 1201

Query: 555  S 557
            S
Sbjct: 1202 S 1202


>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
           putative protein [Arabidopsis thaliana]
          Length = 473

 Score =  121 bits (303), Expect = 2e-25
 Identities = 62/172 (36%), Positives = 86/172 (50%)
 Frame = +3

Query: 60  FSIHSLWNFIRHKSGEVEWSHFVWFPKAIKKHAFCLWLAIRGALTTQDRIRGWGVSASNR 239
           FS    WN IR  S +V W   VWF +AI KHAFC+WLA+   L+T DR+  W +     
Sbjct: 287 FSTKDTWNHIRTVSNKVAWYKGVWFAQAIPKHAFCMWLAVHNRLSTGDRMTLWNMGVDAT 346

Query: 240 CYLCGSDEETRDHLFFACELSSSIWTDILRLCLITGGVRTWNDTMIWATNSLKHSSFANW 419
           C LC    E+RDHLFF+C  ++ IW  + +    T     W  T+I   +       A +
Sbjct: 347 CILCNKALESRDHLFFSCPFATEIWEPLAKTIYNTCFYTDW-QTIINNVSRNWPDRIAGF 405

Query: 420 VRRLALAASVYVLWRERNERYHNNKCKDKRALVVFIRDQVRFRVASFKTIDD 575
           + R  L  ++Y LWRERNER H         L+ +I   +R  + + K   D
Sbjct: 406 LARCILQVTIYTLWRERNERKHGASPNSSSRLISWIDKHIRNHLMAIKQSGD 457


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  119 bits (298), Expect = 6e-25
 Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 2/177 (1%)
 Frame = +3

Query: 51   DKKFSIHSLWNFIRHKSGEVEWSHFVWFPKAIKKHAFCLWLAIRGALTTQDRIRGWGVSA 230
            +K+F     WN +R    +  W   VWFP +  K++F LWL ++  L+T DRI+ W    
Sbjct: 1333 NKRFITKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQ 1392

Query: 231  SNRCYLCGSDEETRDHLFFACELSSSIWTDILRLCLITGGVRTWND--TMIWATNSLKHS 404
               C LC + EETRDHLFF+C+ +S +W  + +  L T   R WN   T++  +N  +  
Sbjct: 1393 LVTCTLCNNAEETRDHLFFSCQYTSYVWEALTQRLLSTNYSRDWNRLFTLLCTSNLPRDH 1452

Query: 405  SFANWVRRLALAASVYVLWRERNERYHNNKCKDKRALVVFIRDQVRFRVASFKTIDD 575
             F   + R    AS+Y +WRERN R H         L+  I   VR R++S +   D
Sbjct: 1453 LF---LFRYVFQASIYHIWRERNARRHGEISSPTNRLIKLIDKTVRNRISSIRDTGD 1506


>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1447

 Score =  118 bits (296), Expect = 1e-24
 Identities = 67/187 (35%), Positives = 94/187 (50%), Gaps = 3/187 (1%)
 Frame = +3

Query: 24   DKVTWDLTLD---KKFSIHSLWNFIRHKSGEVEWSHFVWFPKAIKKHAFCLWLAIRGALT 194
            D V W    D    +FS    WN IR  + +V W   VWF +A  K +FC+WLA    L+
Sbjct: 1247 DDVVWRGRNDIYKPQFSTRDTWNNIRTTATKVTWYKGVWFYQATPKFSFCVWLAALDRLS 1306

Query: 195  TQDRIRGWGVSASNRCYLCGSDEETRDHLFFACELSSSIWTDILRLCLITGGVRTWNDTM 374
            T DR+  W   +S  C  C    ++RDHLFF C  SS +WT   +  L T     W+  +
Sbjct: 1307 TGDRMANWKGVSSGSCVFCNHPTKSRDHLFFNCPYSSEVWTVTAKNILTTRFTTDWH-LL 1365

Query: 375  IWATNSLKHSSFANWVRRLALAASVYVLWRERNERYHNNKCKDKRALVVFIRDQVRFRVA 554
            +   +SL+ +   N++ R A  ASVY +W ERN R H N       L+ +I  QVR  ++
Sbjct: 1366 LNTVSSLQQNRVENFLVRYAFQASVYSIWSERNRRRHGNTLHSATRLIGWIDKQVRNILS 1425

Query: 555  SFKTIDD 575
            S +   D
Sbjct: 1426 SIRIKGD 1432


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  114 bits (286), Expect = 1e-23
 Identities = 60/173 (34%), Positives = 85/173 (49%)
 Frame = +3

Query: 57   KFSIHSLWNFIRHKSGEVEWSHFVWFPKAIKKHAFCLWLAIRGALTTQDRIRGWGVSASN 236
            +FS    WN IR  S +  W   VWF  A  K +FC WLAIR  L+T DR+  W      
Sbjct: 759  RFSTKDTWNHIRTSSNQRAWHKGVWFAHATPKFSFCAWLAIRNRLSTGDRMMTWNNGTPT 818

Query: 237  RCYLCGSDEETRDHLFFACELSSSIWTDILRLCLITGGVRTWNDTMIWATNSLKHSSFAN 416
             C  C S  ETRDHLFF C  SS IWT I +          W+  + + ++S +     +
Sbjct: 819  TCVFCSSPMETRDHLFFQCCYSSEIWTSIAKNVYKDRFSTKWSAVVNYISDS-QPDRIQS 877

Query: 417  WVRRLALAASVYVLWRERNERYHNNKCKDKRALVVFIRDQVRFRVASFKTIDD 575
            ++ R     S++ +WRERN R H  K +    L+  I   +R ++++ K   D
Sbjct: 878  FLSRYTFQVSIHSIWRERNSRRHGEKSRSASNLIRQIDKTIRNQLSTIKKKGD 930


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  111 bits (278), Expect = 1e-22
 Identities = 59/181 (32%), Positives = 91/181 (50%), Gaps = 3/181 (1%)
 Frame = +3

Query: 9   NSLEPDKVTWDLTLD---KKFSIHSLWNFIRHKSGEVEWSHFVWFPKAIKKHAFCLWLAI 179
           N L  D   W    D     FS    WN +R KS EV W   VWF  +  K+ FC WLA+
Sbjct: 424 NLLREDATLWRGKGDVFKTSFSTKDTWNQVRKKSNEVAWYKGVWFSHSTPKYQFCTWLAL 483

Query: 180 RGALTTQDRIRGWGVSASNRCYLCGSDEETRDHLFFACELSSSIWTDILRLCLITGGVRT 359
           R  L+T  R++ W   +  +C  C +  ETRDHLFF+C  +S+IWT I +  L       
Sbjct: 484 RNRLSTGYRMQLWNNGSDVKCTFCSTSIETRDHLFFSCSYASAIWTAIAKNVLQHRFSTD 543

Query: 360 WNDTMIWATNSLKHSSFANWVRRLALAASVYVLWRERNERYHNNKCKDKRALVVFIRDQV 539
           W  T++   +  +     +++ R     +V+ +W+ERN+R H  + +    L+ ++  Q+
Sbjct: 544 W-QTIVNYISETQTDRIRSFLSRYIFQLTVHTVWKERNDRRHGEEPRTSANLISWMDKQI 602

Query: 540 R 542
           R
Sbjct: 603 R 603


>gb|ABE65413.1| hypothetical protein At1g62890 [Arabidopsis thaliana]
          Length = 195

 Score =  109 bits (273), Expect = 5e-22
 Identities = 58/166 (34%), Positives = 81/166 (48%)
 Frame = +3

Query: 78  WNFIRHKSGEVEWSHFVWFPKAIKKHAFCLWLAIRGALTTQDRIRGWGVSASNRCYLCGS 257
           WN I     +  W   VWFP +  K++F LWL I+  L+T D I+ W       C LCG+
Sbjct: 9   WNNIGMHQPQTNWYKGVWFPYSTPKYSFLLWLTIQNRLSTGDHIKAWNSGQQVTCTLCGN 68

Query: 258 DEETRDHLFFACELSSSIWTDILRLCLITGGVRTWNDTMIWATNSLKHSSFANWVRRLAL 437
            EETR+ LFF+C  +S +W  + +  L     R WN  +    N+   +    ++ R   
Sbjct: 69  AEETRNLLFFSCHYTSEVWRTLTQRLLSNDYSRDWNRLLPLLCNTNMPTDLL-FLFRYVF 127

Query: 438 AASVYVLWRERNERYHNNKCKDKRALVVFIRDQVRFRVASFKTIDD 575
            ASVY +WRERN R H         L+ FI   VR R+ S +   D
Sbjct: 128 QASVYHIWRERNARRHGEISSPPNRLIKFIDKNVRNRINSIRDTGD 173


>gb|ABK28152.1| unknown [Arabidopsis thaliana]
          Length = 196

 Score =  109 bits (273), Expect = 5e-22
 Identities = 58/166 (34%), Positives = 81/166 (48%)
 Frame = +3

Query: 78  WNFIRHKSGEVEWSHFVWFPKAIKKHAFCLWLAIRGALTTQDRIRGWGVSASNRCYLCGS 257
           WN I     +  W   VWFP +  K++F LWL I+  L+T D I+ W       C LCG+
Sbjct: 9   WNNIGMHQPQTNWYKGVWFPYSTPKYSFLLWLTIQNRLSTGDHIKAWNSGQQVTCTLCGN 68

Query: 258 DEETRDHLFFACELSSSIWTDILRLCLITGGVRTWNDTMIWATNSLKHSSFANWVRRLAL 437
            EETR+ LFF+C  +S +W  + +  L     R WN  +    N+   +    ++ R   
Sbjct: 69  AEETRNLLFFSCHYTSEVWRTLTQRLLSNDYSRDWNRLLPLLCNTNMPTDLL-FLFRYVF 127

Query: 438 AASVYVLWRERNERYHNNKCKDKRALVVFIRDQVRFRVASFKTIDD 575
            ASVY +WRERN R H         L+ FI   VR R+ S +   D
Sbjct: 128 QASVYHIWRERNARRHGEISSPPNRLIKFIDKNVRNRINSIRDTGD 173


>ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, partial [Capsella rubella]
           gi|482569649|gb|EOA33837.1| hypothetical protein
           CARUB_v10021318mg, partial [Capsella rubella]
          Length = 290

 Score =  108 bits (271), Expect = 8e-22
 Identities = 63/184 (34%), Positives = 90/184 (48%), Gaps = 3/184 (1%)
 Frame = +3

Query: 12  SLEPDKVTWDLTLDKK---FSIHSLWNFIRHKSGEVEWSHFVWFPKAIKKHAFCLWLAIR 182
           SLE D   W  + ++    FS    W         V W   VWF + I KHAF  W+ IR
Sbjct: 76  SLESDFFLWRNSPNEPPGVFSTSKTWISTHPAGPLVPWFKSVWFKERIPKHAFISWVVIR 135

Query: 183 GALTTQDRIRGWGVSASNRCYLCGSDEETRDHLFFACELSSSIWTDILRLCLITGGVRTW 362
             LTT+DR+RGWG++  + C LC S  E+R HLFF C  S  +W+       ++     +
Sbjct: 136 NRLTTRDRLRGWGMNVPSECLLCTSSAESRLHLFFECAYSHEVWSSFFTHPSLSPPA-MF 194

Query: 363 NDTMIWATNSLKHSSFANWVRRLALAASVYVLWRERNERYHNNKCKDKRALVVFIRDQVR 542
            D + W  +S   S     + +L   A VY LWRERN R H +  K    ++  I+  +R
Sbjct: 195 EDIVAWVRSS--RSKKLRTICKLIFQAVVYGLWRERNSRLHTSSFKSPAIIIKEIQLVMR 252

Query: 543 FRVA 554
            ++A
Sbjct: 253 AKLA 256


>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score =  108 bits (269), Expect = 1e-21
 Identities = 55/165 (33%), Positives = 85/165 (51%)
 Frame = +3

Query: 57   KFSIHSLWNFIRHKSGEVEWSHFVWFPKAIKKHAFCLWLAIRGALTTQDRIRGWGVSASN 236
            +FS    W++++  S  V W   VWF   + K AF  W+     L T+DR+R WG S   
Sbjct: 967  RFSTADTWSYLQPSSTSVLWHKAVWFKDHVPKQAFICWVVAHNRLHTRDRLRRWGFSIPP 1026

Query: 237  RCYLCGSDEETRDHLFFACELSSSIWTDILRLCLITGGVRTWNDTMIWATNSLKHSSFAN 416
             C LC   +E+R+HLFF C+ SS IW+  +R  L       +   ++W   + +  +   
Sbjct: 1027 TCVLCNDLDESREHLFFRCQFSSEIWSFFMR-ALNLNPPPQFMHCLLWTLTASRDRNI-T 1084

Query: 417  WVRRLALAASVYVLWRERNERYHNNKCKDKRALVVFIRDQVRFRV 551
             + +L   ASVY +WRERN R H+N  +    ++  I+  VR R+
Sbjct: 1085 LITKLLFHASVYFIWRERNLRIHSNSVRPAHLIIKEIQLIVRARL 1129


>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
          Length = 653

 Score =  107 bits (266), Expect = 3e-21
 Identities = 55/194 (28%), Positives = 97/194 (50%), Gaps = 3/194 (1%)
 Frame = +3

Query: 3    VSNSLEPDKVTWDLTLDK---KFSIHSLWNFIRHKSGEVEWSHFVWFPKAIKKHAFCLWL 173
            V  +   D V W    D+   KFS    WN  R+ S  V W   +WF  A  K +FC WL
Sbjct: 446  VQTTTNMDSVLWRGRNDEYMPKFSTRDTWNQTRNTSTPVTWHMGIWFAHATPKFSFCAWL 505

Query: 174  AIRGALTTQDRIRGWGVSASNRCYLCGSDEETRDHLFFACELSSSIWTDILRLCLITGGV 353
            A++  L+T D++  W    S  C LC ++ ETR+HLFF+C  ++ IW ++ +        
Sbjct: 506  AVQNRLSTGDKMLQWNRRLSPTCVLCNNNIETRNHLFFSCCYTAEIWENLAKNIYKAKFS 565

Query: 354  RTWNDTMIWATNSLKHSSFANWVRRLALAASVYVLWRERNERYHNNKCKDKRALVVFIRD 533
              W+ T++ + ++   +   +++ R    A+++ +W ERN R H  +      L+ ++  
Sbjct: 566  TNWS-TILTSVSTTWRNRTESFLARYIFQATIHTIWHERNGRRHGERSNSATHLIWWLDK 624

Query: 534  QVRFRVASFKTIDD 575
            Q+R ++++     D
Sbjct: 625  QMRNQISTIAASGD 638


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score =  106 bits (265), Expect = 4e-21
 Identities = 58/173 (33%), Positives = 85/173 (49%), Gaps = 1/173 (0%)
 Frame = +3

Query: 60  FSIHSLWNFIRHKSGEVEWSHFVWFPKAIKKHAFCLWLAIRGALTTQDRIRGWGVSASNR 239
           F+    W   R    +V W   VWF  A  K++   W+AI+  LTT DR+  W   A + 
Sbjct: 294 FNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSS 353

Query: 240 CYLCGSDEETRDHLFFACELSSSIWTDILRLCLITGGVRTWNDTMIWATN-SLKHSSFAN 416
           C LC    ETRDHLFF C  S+ +W+ + R  L       W   +   TN SL H     
Sbjct: 354 CVLCHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHFTNRWEAILKLLTNKSLGHE--VP 411

Query: 417 WVRRLALAASVYVLWRERNERYHNNKCKDKRALVVFIRDQVRFRVASFKTIDD 575
           ++ R     +++ LW+ERN R H    +    +V F+  QVR R++S ++ +D
Sbjct: 412 FLTRYTFQLTLHSLWKERNGRRHGEVPQAAAQMVRFLDKQVRNRISSIQSQED 464


>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1449

 Score =  105 bits (263), Expect = 7e-21
 Identities = 55/172 (31%), Positives = 81/172 (47%)
 Frame = +3

Query: 60   FSIHSLWNFIRHKSGEVEWSHFVWFPKAIKKHAFCLWLAIRGALTTQDRIRGWGVSASNR 239
            FS    WN  R    EV W   VWF  +  K +FC+WLA+   L+T D++  W       
Sbjct: 1264 FSTKETWNNTRTMGIEVPWHKGVWFTHSTPKFSFCVWLAVYDRLSTGDKMLLWNRGLQGT 1323

Query: 240  CYLCGSDEETRDHLFFACELSSSIWTDILRLCLITGGVRTWNDTMIWATNSLKHSSFANW 419
            C LC +  E+RDHLFF+C  SS +W    +    +     W   +     + K     ++
Sbjct: 1324 CLLCRNATESRDHLFFSCSFSSEVWEMSAKSIYKSSYSTDWRHLLTKIQENWK-DRVESF 1382

Query: 420  VRRLALAASVYVLWRERNERYHNNKCKDKRALVVFIRDQVRFRVASFKTIDD 575
            + R     SVY +WRERN R H         LV +I  Q+R ++++ K + D
Sbjct: 1383 IARYIFQVSVYAIWRERNRRKHGRNPNQAAQLVRWIDKQIRDQLSAIKLMGD 1434


>ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcriptase)-related protein
           [Arabidopsis thaliana] gi|332195602|gb|AEE33723.1|
           RNA-directed DNA polymerase (reverse
           transcriptase)-related protein [Arabidopsis thaliana]
          Length = 289

 Score =  105 bits (262), Expect = 9e-21
 Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 1/145 (0%)
 Frame = +3

Query: 60  FSIHSLWNFIRHKSGEVEWSHFVWFPKAIKKHAFCLWLAIRGALTTQDRIRGWGVSASNR 239
           FS    W+ IR ++ E++W+  VWF  A+ KHAF +W++    L T+ R+  WG   S  
Sbjct: 109 FSSARTWDAIRPRAPELDWAKAVWFKGAVPKHAFNMWISQLDRLPTRQRLASWGHIQSFD 168

Query: 240 CYLCGSDEETRDHLFFACELSSSIW-TDILRLCLITGGVRTWNDTMIWATNSLKHSSFAN 416
           C LC  + E+RDHL F+CE ++ +W     RLC       +W + + W  +S   SS  +
Sbjct: 169 CCLCTIETESRDHLLFSCEFAAQVWRLAFSRLCPRQRLFCSWAELLSWMRSS--SSSAPS 226

Query: 417 WVRRLALAASVYVLWRERNERYHNN 491
            +R+++  A +Y +WR+RN   HNN
Sbjct: 227 LLRKVSAHAIIYNIWRQRNNVLHNN 251


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  104 bits (260), Expect = 2e-20
 Identities = 53/143 (37%), Positives = 75/143 (52%)
 Frame = +3

Query: 114  WSHFVWFPKAIKKHAFCLWLAIRGALTTQDRIRGWGVSASNRCYLCGSDEETRDHLFFAC 293
            W   VWF     KH+FC+WLAI   L+T  R++ W + +S  C LC ++ ETRDHLFF+C
Sbjct: 761  WHKGVWFAHETPKHSFCVWLAIWNKLSTGQRMQHWNLQSSVGCVLCNNNLETRDHLFFSC 820

Query: 294  ELSSSIWTDILRLCLITGGVRTWNDTMIWATNSLKHSSFANWVRRLALAASVYVLWRERN 473
              +S IW  + +  L       W  T+I   +   H   + ++ R  L ASVY +WRERN
Sbjct: 821  AYTSGIWEALAKNLLQRSYTTDW-QTIISYVSGQCHDRVSCFLARSVLQASVYTIWRERN 879

Query: 474  ERYHNNKCKDKRALVVFIRDQVR 542
             R H         L+ +I   +R
Sbjct: 880  GRRHGETPNPAARLIQWIDKHIR 902


>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 637

 Score =  103 bits (258), Expect = 3e-20
 Identities = 65/192 (33%), Positives = 84/192 (43%), Gaps = 6/192 (3%)
 Frame = +3

Query: 6   SNSLEPDKVTWDLTLDK---KFSIHSLWNFIRHKSGEVEWSHFVWFPKAIKKHAFCLWLA 176
           + S E D+  W    D     FS    W  IR  S E EW   VWFP +  K++F  WLA
Sbjct: 240 ARSQESDRSLWKQKEDSFKGSFSSPKTWQQIRTISNECEWYRGVWFPSSTPKYSFVTWLA 299

Query: 177 IRGALTTQDRIRGWGVSASNRCYLCGSDEETRDHLFFACELSSSIWTDILRLCLITGGVR 356
               L T DR+  W   A   C  C  + ETRDHLFF+C  SS IW  + +  L    V 
Sbjct: 300 FHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSSQIWIALAKGLLNGRNVS 359

Query: 357 TWNDTMIWATNSLKHSS---FANWVRRLALAASVYVLWRERNERYHNNKCKDKRALVVFI 527
           +W+      T  L  SS      +  R    A ++ LWRERN R H         L   I
Sbjct: 360 SWS----LITPHLLDSSQPYLHVFTLRYTFQALIHSLWRERNGRRHGEPAIPASKLTKLI 415

Query: 528 RDQVRFRVASFK 563
              +R R ++ +
Sbjct: 416 DKNIRNRFSTLQ 427


>dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidopsis thaliana]
          Length = 278

 Score =  103 bits (258), Expect = 3e-20
 Identities = 65/192 (33%), Positives = 84/192 (43%), Gaps = 6/192 (3%)
 Frame = +3

Query: 6   SNSLEPDKVTWDLTLDK---KFSIHSLWNFIRHKSGEVEWSHFVWFPKAIKKHAFCLWLA 176
           + S E D+  W    D     FS    W  IR  S E EW   VWFP +  K++F  WLA
Sbjct: 72  ARSQESDRSLWKQKEDSFKGSFSSPKTWQQIRTISNECEWYRGVWFPSSTPKYSFVTWLA 131

Query: 177 IRGALTTQDRIRGWGVSASNRCYLCGSDEETRDHLFFACELSSSIWTDILRLCLITGGVR 356
               L T DR+  W   A   C  C  + ETRDHLFF+C  SS IW  + +  L    V 
Sbjct: 132 FHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSSQIWIALAKGLLNGRNVS 191

Query: 357 TWNDTMIWATNSLKHSS---FANWVRRLALAASVYVLWRERNERYHNNKCKDKRALVVFI 527
           +W+      T  L  SS      +  R    A ++ LWRERN R H         L   I
Sbjct: 192 SWS----LITPHLLDSSQPYLHVFTLRYTFQALIHSLWRERNGRRHGEPAIPASKLTKLI 247

Query: 528 RDQVRFRVASFK 563
              +R R ++ +
Sbjct: 248 DKNIRNRFSTLQ 259


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  102 bits (253), Expect = 1e-19
 Identities = 52/145 (35%), Positives = 75/145 (51%), Gaps = 1/145 (0%)
 Frame = +3

Query: 60   FSIHSLWNFIRHKSGEVEWSHFVWFPKAIKKHAFCLWLAIRGALTTQDRIRGWGVSASNR 239
            FS    W  +R +     W+  VWF  A+ KHAF  W A    L T+ R+  WG+ +S  
Sbjct: 892  FSAAKTWEVLRPRRPVKRWARSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAE 951

Query: 240  CYLCGSDEETRDHLFFACELSSSIWTDI-LRLCLITGGVRTWNDTMIWATNSLKHSSFAN 416
            C LC  D ETRDHL   C+ SS +W  + LRLC     + TW + + W   S   ++  +
Sbjct: 952  CCLCSFDTETRDHLLLLCDFSSQVWRMVFLRLCPRQRLLCTWAELLSWTRQST--AAAPS 1009

Query: 417  WVRRLALAASVYVLWRERNERYHNN 491
             +R++     VY LWR+RN   H++
Sbjct: 1010 LLRKVVAQLVVYNLWRQRNLVLHSS 1034


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  101 bits (252), Expect = 1e-19
 Identities = 52/145 (35%), Positives = 75/145 (51%), Gaps = 1/145 (0%)
 Frame = +3

Query: 60   FSIHSLWNFIRHKSGEVEWSHFVWFPKAIKKHAFCLWLAIRGALTTQDRIRGWGVSASNR 239
            FS    W  +R +     W+  VWF  A+ KHAF  W A    L T+ R+  WG+ +S  
Sbjct: 892  FSAAKTWEVLRPRRPVKRWAKSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAE 951

Query: 240  CYLCGSDEETRDHLFFACELSSSIWTDI-LRLCLITGGVRTWNDTMIWATNSLKHSSFAN 416
            C LC  D ETRDHL   C+ SS +W  + LRLC     + TW + + W   S   ++  +
Sbjct: 952  CCLCSFDTETRDHLLLLCDFSSQVWRMVFLRLCPRQRLLCTWAELLSWTRQST--AAAPS 1009

Query: 417  WVRRLALAASVYVLWRERNERYHNN 491
             +R++     VY LWR+RN   H++
Sbjct: 1010 LLRKVVAQLVVYNLWRQRNLVLHSS 1034