BLASTX nr result

ID: Paeonia22_contig00034273 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00034273
         (788 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                 42   2e-07
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    41   1e-06

>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score = 42.4 bits (98), Expect(3) = 2e-07
 Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
 Frame = +1

Query: 4   LNLDKSMCFTVGISDVCKSNFLSLMDFGEGKLLIRYXXXXXXXXXXXXKDCRPIWDRI-- 177
           ++L+KS  +  G+S++ ++N LS   F  G+L +RY             D  P+ D++  
Sbjct: 309 ISLEKSTLYLAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRS 368

Query: 178 -VPGSTLGAIGYCSSLGAFS*SNRFSLVSRFLV*CFLTS*ACLEDIFR---NFPWKGSDM 345
            +   T  ++ Y   L     ++    +S F +  +     C+++I +    F W G ++
Sbjct: 369 KISSWTARSLSYAGRLALI--NSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPEL 426

Query: 346 LKGGNKIARASFC 384
                KI   S C
Sbjct: 427 NPKKAKITWTSLC 439



 Score = 38.1 bits (87), Expect(3) = 2e-07
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +2

Query: 401 GLGFKRLEDWSLASIG*HIWRIVSKADSVWVRWIW 505
           GLG K L + +  S    IWR+VS+  S+WV W+W
Sbjct: 446 GLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVW 480



 Score = 20.8 bits (42), Expect(3) = 2e-07
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 540 WYWWKILKFR 569
           W W K+LK+R
Sbjct: 501 WMWKKLLKYR 510


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 40.8 bits (94), Expect(2) = 1e-06
 Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 4/131 (3%)
 Frame = +1

Query: 4    LNLDKSMCFTVGISDVCKSNFLSLMDFGEGKLLIRYXXXXXXXXXXXXKDCRPIWDRIVP 183
            ++L+KS  F  GIS   K++ L    F  G L ++Y             D  P+ ++I  
Sbjct: 883  ISLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRA 942

Query: 184  GSTLGAIGYCSSLGAFS-*SNRFSLVSRFLV*CFLTS*ACLEDI---FRNFPWKGSDMLK 351
              T     + S  G      +  S ++ F +  F    ACL++I   F  F W G D+  
Sbjct: 943  RITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNT 1002

Query: 352  GGNKIARASFC 384
               KIA +  C
Sbjct: 1003 KKAKIAWSEVC 1013



 Score = 38.5 bits (88), Expect(2) = 1e-06
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 10/52 (19%)
 Frame = +2

Query: 401  GLGFKRLEDWSLASIG*HIWRIVSKADSVWVRWI----------WEVRLNFG 526
            GLG K L++ +  S+   IWRI+S  DS+WV+W+          W V+ N G
Sbjct: 1020 GLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTG 1071


Top