BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00029477
         (1181 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]              366   e-130
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   300   e-103
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   305   e-102
emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]   302   e-102
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   303   e-102
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   294   e-102
emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]   301   e-101
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]   310   e-101
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  295   e-101
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc...   295   e-101
emb|CAN67546.1| hypothetical protein VITISV_027734 [Vitis vinifera]   303   e-100
gb|AAB82754.1| retrofit [Oryza longistaminata]                        291   e-100
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   304   e-100
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   290   e-100
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   300   1e-99
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   288   3e-99
emb|CAN61230.1| hypothetical protein VITISV_010115 [Vitis vinifera]   293   4e-99
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   288   5e-99
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa...   298   5e-99
emb|CAN67073.1| hypothetical protein VITISV_011746 [Vitis vinifera]   292   5e-99

>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score =  366 bits (939), Expect(2) = e-130
 Identities = 193/298 (64%), Positives = 224/298 (75%)
 Frame = +2

Query: 287  LSIYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYFLGLEAVFNANGDLSLSQTKY 466
            L IYVDDILITGN++SHIS L+ +L  LFSMKDLG +HYFLG+E V+N +  L L+Q KY
Sbjct: 1064 LLIYVDDILITGNNSSHISHLIHNLNSLFSMKDLGSVHYFLGIETVYNGD-HLHLTQHKY 1122

Query: 467  IVDLLHRTKFADVKLVSTPSQTRKKLSLYDGEPLSDLTEYRSVVGALQYLTLTRPDMSFA 646
            IVDLL +TK  D +   TP  + KKLS+YDG  L D +EYRS+VGALQYLTLTRPD+ +A
Sbjct: 1123 IVDLLKKTKLHDSRPYPTPVLSGKKLSVYDGVKLEDPSEYRSIVGALQYLTLTRPDICYA 1182

Query: 647  VNQVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSSVSLQLQAFSXXXXXXXXXXX 826
            VNQVCQFMH PT VHW  VKRILRYLK T +HGL YQ  S   +L A+S           
Sbjct: 1183 VNQVCQFMHSPTNVHWVAVKRILRYLKYTLNHGLVYQPGSH--KLVAYSDADYAGDPDDR 1240

Query: 827  XSTGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYTAAEISWLRSLFQELHVFLPA 1006
             STGG+C          S+KKH+TVS SS EAEYRQLAYTAAE+SWLRSLF++L+VFL  
Sbjct: 1241 HSTGGFC----------SSKKHKTVSRSSAEAEYRQLAYTAAELSWLRSLFRDLNVFLSC 1290

Query: 1007 PRIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRKELDVCYVCIQDQLVDIFT 1180
            PRIWCDNISSISLASNPVF +RTKH+EVDYHYVR+KVVR+EL V YV   DQ  DIFT
Sbjct: 1291 PRIWCDNISSISLASNPVFHSRTKHIEVDYHYVRDKVVRQELAVSYVSTADQTADIFT 1348



 Score =  129 bits (324), Expect(2) = e-130
 Identities = 62/90 (68%), Positives = 69/90 (76%)
 Frame = +1

Query: 1    LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
            LAV H WPIRQLDVQN FLH  L ED+YM+Q  GFVD  FP HV KL RSLYGLKQAPRA
Sbjct: 970  LAVSHRWPIRQLDVQNVFLHGYLNEDIYMKQHVGFVDPKFPQHVCKLRRSLYGLKQAPRA 1029

Query: 181  *YQHFSDYLEDLGFTGSKADYSLFTLRRNG 270
             ++ FSDYLE+LGF  S+ADYS+FT    G
Sbjct: 1030 WFRCFSDYLEELGFLESRADYSMFTFNNRG 1059


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score =  300 bits (769), Expect(2) = e-103
 Identities = 159/299 (53%), Positives = 207/299 (69%), Gaps = 3/299 (1%)
 Frame = +2

Query: 293  IYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYFLGLEAVFNANGDLSLSQTKYIV 472
            IYVDDI++T +    +  L+ DL + F++KDLG LHYFLG+E V   +G + L+Q KY+ 
Sbjct: 931  IYVDDIIVTSSRQEAVPALLRDLQKEFALKDLGDLHYFLGIE-VTKVSGGIVLTQDKYVN 989

Query: 473  DLLHRTKFADVKLVSTPSQTRKKLSLYDGEPL--SDLTEYRSVVGALQYLTLTRPDMSFA 646
            DLL R    D K VSTP  T +KLS+ +G+PL  +D T YRSVVGALQYLTLTRPD++F 
Sbjct: 990  DLLRRVNMFDCKPVSTPLSTSEKLSINEGDPLGPNDATHYRSVVGALQYLTLTRPDIAFP 1049

Query: 647  VNQVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSSVSLQLQAFSXXXXXXXXXXX 826
            VN+VCQF+H PTT HW  VKRILRYLK     GL   S S S+ + A+S           
Sbjct: 1050 VNKVCQFLHAPTTHHWAAVKRILRYLKQCTRLGL-KLSKSRSMLVSAYSDADWAGSLDDR 1108

Query: 827  XSTGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYTAAEISWLRSLFQELHVFLPA 1006
             STGG+ +FLG NL+SWSA+K  TVS SSTE+EY+ LA   AEI W+++L  EL V  P+
Sbjct: 1109 RSTGGFAVFLGDNLVSWSARKQATVSRSSTESEYKALANATAEIMWVQTLLAELQVESPS 1168

Query: 1007 -PRIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRKELDVCYVCIQDQLVDIFT 1180
              ++WCDN+ +  L++NPVF ARTKH+EVDYH+VRE+V RK L++ +V   DQ+ D FT
Sbjct: 1169 MAKLWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSRKLLEIDFVPTGDQVADGFT 1227



 Score =  104 bits (259), Expect(2) = e-103
 Identities = 52/84 (61%), Positives = 62/84 (73%)
 Frame = +1

Query: 1    LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
            +AV   W +RQLDVQNAFLH  L E+VYM+QP G+ DS+ P +V KL ++LYGLKQAPRA
Sbjct: 835  IAVSKGWCMRQLDVQNAFLHGVLEEEVYMKQPPGYEDSSLPGYVCKLDKALYGLKQAPRA 894

Query: 181  *YQHFSDYLEDLGFTGSKADYSLF 252
             Y   S  L D+GF GSKAD SLF
Sbjct: 895  WYSRLSKKLYDMGFQGSKADTSLF 918


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
            gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
            Japonica Group]
          Length = 821

 Score =  305 bits (781), Expect(2) = e-102
 Identities = 161/301 (53%), Positives = 208/301 (69%), Gaps = 3/301 (0%)
 Frame = +2

Query: 287  LSIYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYFLGLEAVFNANGDLSLSQTKY 466
            L IYVDDI++  +     STL+ +L + F++KDLG LHYFLG+E V      L LSQ KY
Sbjct: 497  LLIYVDDIIMASSVPDATSTLLQELSKDFALKDLGDLHYFLGIE-VHKVKDGLMLSQEKY 555

Query: 467  IVDLLHRTKFADVKLVSTPSQTRKKLSLYDGEPLS--DLTEYRSVVGALQYLTLTRPDMS 640
              DLL R    + K VSTP  T +KLS+ +G  L   D T+YRSVVGALQYLTLTRPD+S
Sbjct: 556  ASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDIS 615

Query: 641  FAVNQVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSSVSLQLQAFSXXXXXXXXX 820
            F++N+VCQF+H PTT HW  VKRILRY+K T D GL +   + SL +  FS         
Sbjct: 616  FSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKF-CRNPSLLVSGFSDADWAGSPD 674

Query: 821  XXXSTGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYTAAEISWLRSLFQELHVFL 1000
               STGG+ +FLGPNL+SWSA+K  TVS SSTEAEY+ LA   AEI W+++L QEL V  
Sbjct: 675  DRRSTGGFAVFLGPNLVSWSARKQATVSRSSTEAEYKALANATAEIMWVQTLLQELGVES 734

Query: 1001 P-APRIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRKELDVCYVCIQDQLVDIF 1177
            P A ++WCDN+ +  L++NP+F ARTKH+EVD+H+VRE+V RK L++ Y+  +DQ+ D F
Sbjct: 735  PRAAKLWCDNLGAKYLSANPIFHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGF 794

Query: 1178 T 1180
            T
Sbjct: 795  T 795



 Score = 97.1 bits (240), Expect(2) = e-102
 Identities = 49/88 (55%), Positives = 60/88 (68%)
 Frame = +1

Query: 1   LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
           LAV   W +RQLDV+NAFLH  L E+VYM QP G+   + P +V KL ++LYGLKQAPRA
Sbjct: 403 LAVSRGWSLRQLDVKNAFLHGVLEEEVYMEQPPGYEKKSMPNYVCKLDKALYGLKQAPRA 462

Query: 181 *YQHFSDYLEDLGFTGSKADYSLFTLRR 264
            Y   S  L +LGF  SKAD SLF  ++
Sbjct: 463 WYSRLSTKLSELGFVPSKADTSLFFYKK 490


>emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]
          Length = 1434

 Score =  302 bits (774), Expect(2) = e-102
 Identities = 160/318 (50%), Positives = 211/318 (66%)
 Frame = +2

Query: 227  DRKLTILSSPCDVMVSF*SSLSIYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYF 406
            D  L I  +  D+++     L +YVDDIL+TG++   +S  +  L   F+++DLGPL YF
Sbjct: 1034 DTSLFIFHTATDILI-----LLVYVDDILVTGSNPMLVSHFISYLRTKFALRDLGPLSYF 1088

Query: 407  LGLEAVFNANGDLSLSQTKYIVDLLHRTKFADVKLVSTPSQTRKKLSLYDGEPLSDLTEY 586
            LG++A       L L+Q KYI DLL+RT+    K   TP +  + LS  DG  LSD +EY
Sbjct: 1089 LGIQAQ-QLGSVLHLNQHKYIADLLNRTQMETSKPAPTPGRLGRTLSQSDGMSLSDPSEY 1147

Query: 587  RSVVGALQYLTLTRPDMSFAVNQVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSS 766
            R  VGALQY+TLTRPD++FAVN+ CQFM KP+ VHW  VKRILRYLK T   GL +Q ++
Sbjct: 1148 RRTVGALQYVTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLGLHFQPAA 1207

Query: 767  VSLQLQAFSXXXXXXXXXXXXSTGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYT 946
             S++LQ +S            ST GYC+FLG NLISWS+ K R VS SS E+EYR L   
Sbjct: 1208 -SMELQGYSDADWASCPDDRRSTSGYCVFLGSNLISWSSSKQRLVSKSSAESEYRGLVSL 1266

Query: 947  AAEISWLRSLFQELHVFLPAPRIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRK 1126
             AE+ W++SL QEL +    P +WCDN S+  LA+NPVF +R+KH+E+D H++REKV+R+
Sbjct: 1267 TAELVWIQSLLQELCLPTSPPILWCDNQSAAHLAANPVFHSRSKHIELDLHFIREKVLRQ 1326

Query: 1127 ELDVCYVCIQDQLVDIFT 1180
            EL +CYV   DQL DIFT
Sbjct: 1327 ELQICYVPSGDQLADIFT 1344



 Score = 99.0 bits (245), Expect(2) = e-102
 Identities = 48/84 (57%), Positives = 61/84 (72%)
 Frame = +1

Query: 1    LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
            LAV   W +RQLDV+NAFL+  L E+V+M QP+GFV+  +P +V KLH++LYGLKQAPRA
Sbjct: 955  LAVSFQWSVRQLDVENAFLNGDLEEEVFMTQPQGFVNPTYPTYVCKLHKALYGLKQAPRA 1014

Query: 181  *YQHFSDYLEDLGFTGSKADYSLF 252
             +Q     L D GF  S+AD SLF
Sbjct: 1015 WFQKLRIALLDYGFQSSRADTSLF 1038


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  303 bits (777), Expect(2) = e-102
 Identities = 160/301 (53%), Positives = 207/301 (68%), Gaps = 3/301 (0%)
 Frame = +2

Query: 287  LSIYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYFLGLEAVFNANGDLSLSQTKY 466
            L IYVDDI++  +     STL+ +L + F++KDLG LHYFLG+E V      L LSQ KY
Sbjct: 1075 LLIYVDDIIVASSVPDATSTLLQELSKDFALKDLGDLHYFLGIE-VHKVKDGLMLSQEKY 1133

Query: 467  IVDLLHRTKFADVKLVSTPSQTRKKLSLYDGEPLS--DLTEYRSVVGALQYLTLTRPDMS 640
              DLL R    + K VSTP  T +KLS+ +G  L   D T+YRSVVGALQYLTLTRPD+S
Sbjct: 1134 ASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDIS 1193

Query: 641  FAVNQVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSSVSLQLQAFSXXXXXXXXX 820
            F++N+VCQF+H PTT HW  VKRILRY+K T D GL +   + SL +  FS         
Sbjct: 1194 FSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKF-CRNPSLLVSGFSDADWAGSPD 1252

Query: 821  XXXSTGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYTAAEISWLRSLFQELHVFL 1000
               STGG+ +FLGPNL+SWSA+K  TVS SS EAEY+ LA   AEI W+++L QEL V  
Sbjct: 1253 DRRSTGGFAVFLGPNLVSWSARKQATVSRSSIEAEYKALANATAEIMWVQTLLQELGVES 1312

Query: 1001 P-APRIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRKELDVCYVCIQDQLVDIF 1177
            P A ++WCDN+ +  L++NP+F ARTKH+EVD+H+VRE+V RK L++ Y+  +DQ+ D F
Sbjct: 1313 PRAAKLWCDNLGAKYLSANPIFHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGF 1372

Query: 1178 T 1180
            T
Sbjct: 1373 T 1373



 Score = 97.8 bits (242), Expect(2) = e-102
 Identities = 49/88 (55%), Positives = 61/88 (69%)
 Frame = +1

Query: 1    LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
            LAV   W +RQLDV+NAFLH  L E+VYM+QP G+   + P +V KL ++LYGLKQAPRA
Sbjct: 981  LAVSRGWSLRQLDVKNAFLHGVLEEEVYMKQPPGYEKKSMPNYVCKLDKALYGLKQAPRA 1040

Query: 181  *YQHFSDYLEDLGFTGSKADYSLFTLRR 264
             Y   S  L +LGF  SKAD SLF  ++
Sbjct: 1041 WYSRLSTKLSELGFVPSKADTSLFFYKK 1068


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  294 bits (752), Expect(2) = e-102
 Identities = 157/299 (52%), Positives = 202/299 (67%), Gaps = 3/299 (1%)
 Frame = +2

Query: 293  IYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYFLGLEAVFNANGDLSLSQTKYIV 472
            IYVDDI++T +    +S L+ DL + F++KDLG LHYFLG+E V     ++ L+Q KY  
Sbjct: 1131 IYVDDIIVTSSRQEAVSALLQDLKKEFALKDLGDLHYFLGIE-VNKVTDEIILTQDKYAC 1189

Query: 473  DLLHRTKFADVKLVSTPSQTRKKLSLYDGEPLS--DLTEYRSVVGALQYLTLTRPDMSFA 646
            DLL R    D K VSTP  T +KLS ++G+ L   D T YRSVVGALQYLTLTRPD++F 
Sbjct: 1190 DLLRRVNMFDCKPVSTPLSTSEKLSAHEGDLLGPLDATNYRSVVGALQYLTLTRPDIAFP 1249

Query: 647  VNQVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSSVSLQLQAFSXXXXXXXXXXX 826
            VN+VCQF+H PTTVHW  VKRILRYLK     GL     S S+ + A+S           
Sbjct: 1250 VNKVCQFLHAPTTVHWAAVKRILRYLKQCTKLGL-KLCKSKSMLVSAYSDADWAGSLDDR 1308

Query: 827  XSTGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYTAAEISWLRSLFQELHV-FLP 1003
             STGG+ +FLG NL+SW A+K  TVS SSTE+EY+ LA   AEI W+++L  EL V   P
Sbjct: 1309 RSTGGFAVFLGDNLVSWCARKQATVSRSSTESEYKALANATAEIMWVQTLLTELQVQSPP 1368

Query: 1004 APRIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRKELDVCYVCIQDQLVDIFT 1180
              ++WCDN+ +  L+SNPVF ARTKH+EVDYH+VRE+V +K L++ +V   DQ+ D FT
Sbjct: 1369 MAKLWCDNLGAKYLSSNPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPTGDQVADGFT 1427



 Score =  106 bits (265), Expect(2) = e-102
 Identities = 53/90 (58%), Positives = 63/90 (70%)
 Frame = +1

Query: 1    LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
            +AV   W +RQLDVQNAFLH  L E+VYM+QP G+ D +FP +V KL ++LYGLKQAPRA
Sbjct: 1035 IAVSRGWCMRQLDVQNAFLHGFLEEEVYMKQPPGYEDESFPGYVCKLDKALYGLKQAPRA 1094

Query: 181  *YQHFSDYLEDLGFTGSKADYSLFTLRRNG 270
             Y   S  L DLGF GSK D SLF   + G
Sbjct: 1095 WYSRLSKKLYDLGFQGSKGDTSLFFYNKGG 1124


>emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]
          Length = 773

 Score =  301 bits (771), Expect(2) = e-101
 Identities = 159/318 (50%), Positives = 211/318 (66%)
 Frame = +2

Query: 227  DRKLTILSSPCDVMVSF*SSLSIYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYF 406
            D  L I  +  D+++     L +YVDDIL+TG++ + +S  +  L   F+++DLGPL YF
Sbjct: 381  DTSLFIFHTATDILI-----LLVYVDDILVTGSNPTLVSHFISYLRTKFALRDLGPLSYF 435

Query: 407  LGLEAVFNANGDLSLSQTKYIVDLLHRTKFADVKLVSTPSQTRKKLSLYDGEPLSDLTEY 586
            LG++A       L L+Q KYI DLL+RT+    K   TP +  + LS  DG  LSD +EY
Sbjct: 436  LGIQAQ-QLGSVLHLNQHKYIADLLNRTQMETSKPAPTPGRLGRTLSQSDGVSLSDPSEY 494

Query: 587  RSVVGALQYLTLTRPDMSFAVNQVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSS 766
            R  VGALQY+TLTRPD++FAVN+ CQFM KP+ VHW  VKRILRYLK T   GL +Q ++
Sbjct: 495  RRTVGALQYVTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLGLHFQPAA 554

Query: 767  VSLQLQAFSXXXXXXXXXXXXSTGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYT 946
             S++ Q +S            ST GYC+FLG NLISWS+ K R VS SS E+EYR L   
Sbjct: 555  -SMEXQGYSDADWASCPDDRRSTSGYCVFLGSNLISWSSSKQRLVSKSSAESEYRGLVSL 613

Query: 947  AAEISWLRSLFQELHVFLPAPRIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRK 1126
             AE+ W++SL QEL +    P +WCDN S+  LA+NPVF +R+KH+E+D H++REKV+R+
Sbjct: 614  TAELVWIQSLLQELCLPTSPPILWCDNQSAAHLAANPVFHSRSKHIELDLHFIREKVLRQ 673

Query: 1127 ELDVCYVCIQDQLVDIFT 1180
            EL +CYV   DQL DIFT
Sbjct: 674  ELQICYVPSGDQLADIFT 691



 Score = 97.4 bits (241), Expect(2) = e-101
 Identities = 47/84 (55%), Positives = 60/84 (71%)
 Frame = +1

Query: 1   LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
           LAV   W +RQLDV+N FL+  L E+V+M QP+GFV+  +P +V KLH++LYGLKQAPRA
Sbjct: 302 LAVSFQWSVRQLDVENGFLNGDLEEEVFMTQPQGFVNPTYPTYVCKLHKALYGLKQAPRA 361

Query: 181 *YQHFSDYLEDLGFTGSKADYSLF 252
            +Q     L D GF  S+AD SLF
Sbjct: 362 WFQKLRIALLDYGFQSSRADTSLF 385


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score =  310 bits (795), Expect(2) = e-101
 Identities = 151/297 (50%), Positives = 215/297 (72%), Gaps = 1/297 (0%)
 Frame = +2

Query: 293  IYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYFLGLEAVFNANGDLSLSQTKYIV 472
            +YVDDIL+TG+S++ IS+L+  L  +F+++DLG L +FLG+E  +N  G ++LSQTKYI 
Sbjct: 1080 VYVDDILVTGSSSTQISSLIAKLDSVFALRDLGQLSFFLGIEVSYN-EGSMTLSQTKYIS 1138

Query: 473  DLLHRTKFADVKLVSTPSQTRKKLSLYDGEPLSDLTEYRSVVGALQYLTLTRPDMSFAVN 652
            DLLHRT+  D K  +TP    K LS +DG+P++D+T YRSVVGALQY+TLTRPD++FAVN
Sbjct: 1139 DLLHRTELFDTKPANTPGAVGKNLSKFDGDPMTDVTHYRSVVGALQYVTLTRPDIAFAVN 1198

Query: 653  QVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSSVSLQLQAFSXXXXXXXXXXXXS 832
            + CQFM +PTT HW +VKRILRYL+ T   GL +  SS +L ++ F+            S
Sbjct: 1199 KACQFMQQPTTAHWLSVKRILRYLRGTMQDGLLFSPSS-NLTIEGFTDADWGAHLDDRRS 1257

Query: 833  TGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYTAAEISWLRSLFQELHVFLPA-P 1009
            + GY ++LG NL+SWS+ K + VS SS E+EYR L +  AEI W+++L QEL V +PA P
Sbjct: 1258 SSGYLVYLGGNLVSWSSTKQKVVSRSSAESEYRGLVFATAEIVWMQALLQELCVPIPAIP 1317

Query: 1010 RIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRKELDVCYVCIQDQLVDIFT 1180
             +W DNIS+  +A NPVF ARTKH+E+D H++R++V+R ++ + +V  ++Q VD+ T
Sbjct: 1318 LLWYDNISAYHMAKNPVFHARTKHIEIDLHFIRDQVMRGKIQLQFVPTEEQPVDLLT 1374



 Score = 87.4 bits (215), Expect(2) = e-101
 Identities = 44/84 (52%), Positives = 55/84 (65%)
 Frame = +1

Query: 1    LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
            +A+   W IRQLDV NAFL+  L E VYM QP G+ D  FP  V +L ++LYGLKQAPRA
Sbjct: 984  VALSFKWEIRQLDVHNAFLNGELEEQVYMSQPPGYFDPQFPNRVCRLKKALYGLKQAPRA 1043

Query: 181  *YQHFSDYLEDLGFTGSKADYSLF 252
             +Q  S  L   GF+ S+ D S+F
Sbjct: 1044 WFQRLSSALLQWGFSMSRTDSSMF 1067


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  295 bits (754), Expect(2) = e-101
 Identities = 153/299 (51%), Positives = 208/299 (69%), Gaps = 3/299 (1%)
 Frame = +2

Query: 293  IYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYFLGLEAVFNANGDLSLSQTKYIV 472
            +YVDDI+I  ++    + L+ DL + F++KDLG LHYFLG+E     NG + L+Q KY  
Sbjct: 1120 VYVDDIIIASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVPNG-IVLTQEKYAN 1178

Query: 473  DLLHRTKFADVKLVSTPSQTRKKLSLYDGEPL--SDLTEYRSVVGALQYLTLTRPDMSFA 646
            DLL R   ++ K VSTP    +KL+LY+G PL  +D T+YRS+VGALQYLTLTRPD++++
Sbjct: 1179 DLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYS 1238

Query: 647  VNQVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSSVSLQLQAFSXXXXXXXXXXX 826
            VN+VCQF+H PTT HWT VKRILRYL      GL    S+ +L +  +S           
Sbjct: 1239 VNKVCQFLHAPTTDHWTAVKRILRYLNQCTSLGLNIHKSASTL-VHGYSDADWAGSVDDR 1297

Query: 827  XSTGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYTAAEISWLRSLFQELHVFLP- 1003
             STGG+ +FLG NL+SWSA+K  TVS SSTEAEY+ +A T AE+ W+++L +EL +  P 
Sbjct: 1298 KSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTLLRELGIDSPK 1357

Query: 1004 APRIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRKELDVCYVCIQDQLVDIFT 1180
            A +IWCDN+ +  L++NPVF ARTKH+EVDYH+VRE+V +K L++ +V   DQ+ D FT
Sbjct: 1358 AAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFT 1416



 Score =  100 bits (250), Expect(2) = e-101
 Identities = 52/90 (57%), Positives = 62/90 (68%)
 Frame = +1

Query: 1    LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
            +AV   W +RQLDVQNAFLH  L E+VYM+QP GF   + P +V KL ++LYGLKQAPRA
Sbjct: 1024 IAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESFSKPNYVCKLDKALYGLKQAPRA 1083

Query: 181  *YQHFSDYLEDLGFTGSKADYSLFTLRRNG 270
             Y   S  L +LGF  SKAD SLF L + G
Sbjct: 1084 WYSRLSKKLVELGFEASKADTSLFFLNKGG 1113


>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 900

 Score =  295 bits (755), Expect(2) = e-101
 Identities = 161/308 (52%), Positives = 207/308 (67%), Gaps = 12/308 (3%)
 Frame = +2

Query: 293  IYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYFLGLEAVFNANGDLSLSQTKYIV 472
            +YVDDI++  +S+  ++ L+ DL + F++KDLG LHYFLG+E V      L LSQ +Y  
Sbjct: 576  VYVDDIIVASSSSPAVNALLKDLEKDFALKDLGDLHYFLGIE-VKRTPQTLLLSQERYTT 634

Query: 473  DLLHRTKFADVKLVSTPSQTRKKLSLYDGEPL--SDLTEYRSVVGALQYLTLTRPDMSFA 646
            +LL R      K VSTP  T +KLS+  G+ L  SD+T+YRS+VGALQYLTLTRPD+S++
Sbjct: 635  ELLERVNMTSCKPVSTPLSTAEKLSVEIGDELGPSDVTQYRSIVGALQYLTLTRPDISYS 694

Query: 647  VNQVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSSVSLQLQAFS---------XX 799
            VN+VCQF+  PTT HW+ VKRILRYLK T D GL    SS +L + AFS           
Sbjct: 695  VNKVCQFLQTPTTAHWSAVKRILRYLKGTLDLGLKIVKSSSNL-VSAFSDADWAGSVDDR 753

Query: 800  XXXXXXXXXXSTGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYTAAEISWLRSLF 979
                      STGG+ +F G NLISWSA+K  TVS SSTEAEY+ LA  AAEI W+R L 
Sbjct: 754  RSTGGFADRRSTGGFAVFFGDNLISWSARKQATVSRSSTEAEYKALANAAAEIIWVRKLL 813

Query: 980  QELHVFLP-APRIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRKELDVCYVCIQ 1156
             EL +  P A R+WCDN+ +  + +NPVF ARTKH+EVDYH+VRE+V +K LD+ +V  Q
Sbjct: 814  TELGILHPNAARLWCDNLGATYMTANPVFHARTKHIEVDYHFVREQVAQKLLDIHFVSSQ 873

Query: 1157 DQLVDIFT 1180
            DQ+ D FT
Sbjct: 874  DQVADGFT 881



 Score =  100 bits (249), Expect(2) = e-101
 Identities = 50/84 (59%), Positives = 61/84 (72%)
 Frame = +1

Query: 1   LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
           +A+   W +RQLDVQNAFLH  L E+VYMRQP GF D+  P  + KL ++LYGLKQAPRA
Sbjct: 480 IAMSQGWSLRQLDVQNAFLHGYLDEEVYMRQPPGFEDARQPHFLCKLDKALYGLKQAPRA 539

Query: 181 *YQHFSDYLEDLGFTGSKADYSLF 252
            Y   S  L++LGF+ SKAD SLF
Sbjct: 540 WYSRLSKKLQELGFSSSKADTSLF 563


>emb|CAN67546.1| hypothetical protein VITISV_027734 [Vitis vinifera]
          Length = 1635

 Score =  303 bits (777), Expect(2) = e-100
 Identities = 149/297 (50%), Positives = 210/297 (70%), Gaps = 1/297 (0%)
 Frame = +2

Query: 293  IYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYFLGLEAVFNANGDLSLSQTKYIV 472
            +YVDDI+I G S++ IS+L+  L  +F+++DLG L YFLG+E  ++  G ++LSQTKY+ 
Sbjct: 874  VYVDDIIIXGCSSTQISSLIXKLDSIFTLRDLGQLSYFLGIEVSYH-EGSMNLSQTKYVS 932

Query: 473  DLLHRTKFADVKLVSTPSQTRKKLSLYDGEPLSDLTEYRSVVGALQYLTLTRPDMSFAVN 652
            DLLHRT+  D K   TP    K LS +DG+P+ ++T+YRSVVGALQYLT+TRPD++FAVN
Sbjct: 933  DLLHRTEMFDTKPAKTPGVVGKNLSKFDGDPMDEVTQYRSVVGALQYLTITRPDIAFAVN 992

Query: 653  QVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSSVSLQLQAFSXXXXXXXXXXXXS 832
            + CQFM +PT+ HW ++KRILRYLK T   GL   S S +L ++ FS            S
Sbjct: 993  KACQFMQQPTSAHWLSIKRILRYLKGTMQDGLLL-SPSTNLTIEXFSDANWGAQPDDRRS 1051

Query: 833  TGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYTAAEISWLRSLFQELHVFLPA-P 1009
            + GY ++LG NL+SWS+ K + VS SS E+EYR LA   AEI W+++L QEL V +PA P
Sbjct: 1052 SSGYLVYLGGNLVSWSSTKQKVVSRSSAESEYRGLALATAEIIWMQALLQELCVPIPAIP 1111

Query: 1010 RIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRKELDVCYVCIQDQLVDIFT 1180
             +W DNIS+  +A NPVF ARTKH+E+D H++R++V+R ++ + +V  +DQ  D+ T
Sbjct: 1112 LLWYDNISAYHMAKNPVFHARTKHIEIDLHFIRDQVIRGKIQLHFVPTEDQPADLLT 1168



 Score = 90.9 bits (224), Expect(2) = e-100
 Identities = 44/84 (52%), Positives = 57/84 (67%)
 Frame = +1

Query: 1    LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
            +A+   W IRQLDV NAFL+  L E VYM QP G++D+ FP  V +L ++LYGLKQAPRA
Sbjct: 778  VALSFQWEIRQLDVHNAFLNGELEEQVYMSQPPGYLDTTFPTKVCRLKKALYGLKQAPRA 837

Query: 181  *YQHFSDYLEDLGFTGSKADYSLF 252
             +Q  S  L   GF+ S+ D S+F
Sbjct: 838  WFQRLSSALIQWGFSNSRTDSSMF 861


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  291 bits (745), Expect(2) = e-100
 Identities = 150/299 (50%), Positives = 207/299 (69%), Gaps = 3/299 (1%)
 Frame = +2

Query: 293  IYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYFLGLEAVFNANGDLSLSQTKYIV 472
            +YVDDI++  ++    + L+ DL + F++KDLG LHYFLG+E    +NG + L+Q KY  
Sbjct: 1129 VYVDDIIVASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNGVI-LTQEKYAN 1187

Query: 473  DLLHRTKFADVKLVSTPSQTRKKLSLYDGEPL--SDLTEYRSVVGALQYLTLTRPDMSFA 646
            DLL R   ++ K VSTP    +KL+LY+G PL  +D  +YRS+VGALQYLTLTRPD++++
Sbjct: 1188 DLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDAIQYRSIVGALQYLTLTRPDIAYS 1247

Query: 647  VNQVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSSVSLQLQAFSXXXXXXXXXXX 826
            VN+VCQF+H PTT HW  VKRILRYL      GL    S+ +L +  +S           
Sbjct: 1248 VNKVCQFLHAPTTSHWIAVKRILRYLNQCTSLGLHIHKSASTL-VHGYSDADWAGSIDDR 1306

Query: 827  XSTGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYTAAEISWLRSLFQELHVFLP- 1003
             STGG+ +FLG NL+SWSA+K  TVS SSTEAEY+ +A T AE+ W+++L +EL +  P 
Sbjct: 1307 KSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTLLKELGIESPK 1366

Query: 1004 APRIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRKELDVCYVCIQDQLVDIFT 1180
            A +IWCDN+ +  L++NPVF ARTKH+EVDYH+VRE+V +K L++ +V   DQ+ D FT
Sbjct: 1367 AAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFT 1425



 Score =  103 bits (256), Expect(2) = e-100
 Identities = 53/90 (58%), Positives = 63/90 (70%)
 Frame = +1

Query: 1    LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
            +AV   W +RQLDVQNAFLH  L E+VYM+QP GF  S+ P +V KL ++LYGLKQAPRA
Sbjct: 1033 IAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESSSKPDYVCKLDKALYGLKQAPRA 1092

Query: 181  *YQHFSDYLEDLGFTGSKADYSLFTLRRNG 270
             Y   S  L +LGF  SKAD SLF L + G
Sbjct: 1093 WYSRLSKKLVELGFEASKADTSLFFLNKGG 1122


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  304 bits (779), Expect(2) = e-100
 Identities = 158/297 (53%), Positives = 203/297 (68%), Gaps = 1/297 (0%)
 Frame = +2

Query: 293  IYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYFLGLEAVFNANGDLSLSQTKYIV 472
            +YVDDIL+ G+  + I++L+  L   FS+KDLG +HYFLG++ V + N  L LSQTKYI 
Sbjct: 1129 VYVDDILVIGSDTAAITSLIAQLNSEFSLKDLGEVHYFLGIQ-VSHTNNGLHLSQTKYIR 1187

Query: 473  DLLHRTKFADVKLVSTPSQTRKKLSLYDGEPLSDLTEYRSVVGALQYLTLTRPDMSFAVN 652
            DLL +TK    K   TP  T  KL + DG+P+ DL  YRS VGALQY+T+TRP++SF+VN
Sbjct: 1188 DLLQKTKMVHCKPARTPLPTGLKLRVGDGDPVEDLHGYRSTVGALQYVTITRPELSFSVN 1247

Query: 653  QVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSSVSLQLQAFSXXXXXXXXXXXXS 832
            +VCQFM  PT  HW  VKRILRYL+ T  HGL  + SS +L L  F             S
Sbjct: 1248 KVCQFMQNPTEEHWKVVKRILRYLQGTLQHGLHLKKSS-NLDLIGFCDADWASDLDDRRS 1306

Query: 833  TGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYTAAEISWLRSLFQELHVFL-PAP 1009
            T G+C+FLGPNLISW +KK   VS SS E EYR LA   AEI+WLRSL  EL + L   P
Sbjct: 1307 TSGHCVFLGPNLISWQSKKQHIVSRSSIEIEYRSLAGLVAEITWLRSLLSELQLPLAKPP 1366

Query: 1010 RIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRKELDVCYVCIQDQLVDIFT 1180
             +WCDN+S++ L++NPV  ARTKH+E+D ++VREKV+RKE++V +V   DQL D+ T
Sbjct: 1367 LVWCDNLSTVLLSANPVLHARTKHIELDLYFVREKVIRKEVEVRHVPSADQLADVLT 1423



 Score = 89.7 bits (221), Expect(2) = e-100
 Identities = 42/84 (50%), Positives = 59/84 (70%)
 Frame = +1

Query: 1    LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
            +A+  +W I+QLDV NAFL+  L E+V+M+QP+GF+D   P  V +LH++LYGLKQAPRA
Sbjct: 1033 IALSRNWAIKQLDVNNAFLNGDLQEEVFMQQPQGFIDEQNPNLVCRLHKALYGLKQAPRA 1092

Query: 181  *YQHFSDYLEDLGFTGSKADYSLF 252
             ++     L   GF  +K+D SLF
Sbjct: 1093 WFEKLHRALLSFGFVSAKSDQSLF 1116


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score =  290 bits (742), Expect(2) = e-100
 Identities = 153/299 (51%), Positives = 203/299 (67%), Gaps = 3/299 (1%)
 Frame = +2

Query: 293  IYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYFLGLEAVFNANGDLSLSQTKYIV 472
            +YVDDI++  +    +  L+ DL + F++KDLG LHYFLG+E V  A+  + L+Q KY+ 
Sbjct: 940  VYVDDIIVASSRQDAVPALLKDLQKDFALKDLGDLHYFLGIE-VNKASSGIVLTQEKYVT 998

Query: 473  DLLHRTKFADVKLVSTPSQTRKKLSLYDGEPL--SDLTEYRSVVGALQYLTLTRPDMSFA 646
            DLL R    D K VSTP  T +KL+L++G+ L  +D + YRSVVGALQYLTLTRPD+ F 
Sbjct: 999  DLLRRVGMTDCKPVSTPLSTSEKLTLHEGDLLGPNDASNYRSVVGALQYLTLTRPDIYFP 1058

Query: 647  VNQVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSSVSLQLQAFSXXXXXXXXXXX 826
            VN+VCQF+H PT VHW  +KRILRYLK     GL   S S S+ +  +S           
Sbjct: 1059 VNKVCQFLHAPTIVHWAAMKRILRYLKQCTKLGLKI-SKSKSMLVSGYSDADWAGNIDDR 1117

Query: 827  XSTGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYTAAEISWLRSLFQELHV-FLP 1003
             STGG+ +FLG NL+SW+AKK  TV  SSTE+EY+ LA   AEI W+++L +EL V   P
Sbjct: 1118 RSTGGFAVFLGDNLVSWNAKKQATVPRSSTESEYKALANATAEIMWIQTLLEELSVPSPP 1177

Query: 1004 APRIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRKELDVCYVCIQDQLVDIFT 1180
              R+WCDN+ +  L+SNPVF ARTKH+EVDYH+VRE++ RK L+V ++   DQ+ D FT
Sbjct: 1178 MARLWCDNLGAKYLSSNPVFHARTKHIEVDYHFVRERMQRKLLEVEFIPTGDQVADGFT 1236



 Score =  102 bits (255), Expect(2) = e-100
 Identities = 52/90 (57%), Positives = 62/90 (68%)
 Frame = +1

Query: 1    LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
            +AV   W +RQLDVQNAFLH  L E+VYM+QP G+ D   P +V KL ++LYGLKQAPRA
Sbjct: 844  IAVSRGWTLRQLDVQNAFLHGILEEEVYMKQPPGYEDKVHPDYVCKLDKALYGLKQAPRA 903

Query: 181  *YQHFSDYLEDLGFTGSKADYSLFTLRRNG 270
             Y   S  L+ LGF GSKAD SLF   + G
Sbjct: 904  WYAKLSQKLQHLGFQGSKADTSLFFYNKGG 933


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  300 bits (768), Expect(2) = 1e-99
 Identities = 155/299 (51%), Positives = 204/299 (68%), Gaps = 3/299 (1%)
 Frame = +2

Query: 293  IYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYFLGLEAVFNANGDLSLSQTKYIV 472
            +YVDDI++  +S    + L+ +L + F++KDLG LHYFLG+E V   N  + L+Q KY +
Sbjct: 1114 VYVDDIIVASSSIDATNALLKNLNQEFALKDLGRLHYFLGIE-VKEVNNGIVLTQEKYAM 1172

Query: 473  DLLHRTKFADVKLVSTPSQTRKKLSLYDGEPLS--DLTEYRSVVGALQYLTLTRPDMSFA 646
            D+L R   +D K V+TP    +KLS ++G P    D T YRS+VGALQYLTLTRPD+SF+
Sbjct: 1173 DVLKRVNMSDCKAVNTPLSISEKLSAHEGNPFGPEDSTRYRSLVGALQYLTLTRPDLSFS 1232

Query: 647  VNQVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSSVSLQLQAFSXXXXXXXXXXX 826
            VN+VCQ++H PTT HW   KRILRYLK+T   GL   S S SL + AFS           
Sbjct: 1233 VNKVCQYLHAPTTKHWAAAKRILRYLKHTVKLGLKI-SKSNSLLVSAFSDADWAGCLDDR 1291

Query: 827  XSTGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYTAAEISWLRSLFQELHVFLP- 1003
             STGG+ +F+GPNL+SWSA+K  TVS SSTEAEY+ LA   AEI W+++L  EL +  P 
Sbjct: 1292 HSTGGFAVFIGPNLVSWSARKQATVSRSSTEAEYKALANVTAEIMWIQTLLHELGIQAPK 1351

Query: 1004 APRIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRKELDVCYVCIQDQLVDIFT 1180
              ++WCDNI +  + +NPVF ARTKH+EVDYH+VRE+V RK L V Y+  +DQ+ D FT
Sbjct: 1352 IAKVWCDNIGAKYMTANPVFHARTKHIEVDYHFVRERVARKFLQVEYISTKDQVADGFT 1410



 Score = 91.7 bits (226), Expect(2) = 1e-99
 Identities = 47/84 (55%), Positives = 58/84 (69%)
 Frame = +1

Query: 1    LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
            +A+   W +RQLDVQNAFLH  L EDV+MRQP G+   +   +V KL ++LYGLKQAPRA
Sbjct: 1020 IAISRGWTLRQLDVQNAFLHGVLEEDVFMRQPPGYEQKD--GYVCKLDKALYGLKQAPRA 1077

Query: 181  *YQHFSDYLEDLGFTGSKADYSLF 252
             Y   S  L +LGF  SK+D SLF
Sbjct: 1078 WYSRLSTKLHELGFKSSKSDTSLF 1101


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score =  288 bits (738), Expect(2) = 3e-99
 Identities = 147/299 (49%), Positives = 207/299 (69%), Gaps = 3/299 (1%)
 Frame = +2

Query: 293  IYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYFLGLEAVFNANGDLSLSQTKYIV 472
            +YVDDI++  ++    + L+ DL + F++KDLG LHYFLG+E    +NG + L+Q KY  
Sbjct: 1132 VYVDDIIVASSTEKATTALLKDLNKEFTLKDLGDLHYFLGIEVTKVSNGVI-LTQEKYAN 1190

Query: 473  DLLHRTKFADVKLVSTPSQTRKKLSLYDGEPL--SDLTEYRSVVGALQYLTLTRPDMSFA 646
            D+L R   ++ K VSTP    +KL+LY+G PL  +D T+YRS+VGALQYLTLTRPD++++
Sbjct: 1191 DMLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYS 1250

Query: 647  VNQVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSSVSLQLQAFSXXXXXXXXXXX 826
            VN+VCQF+H PTT HW  VKRILRYL      GL    S+ +L +  +S           
Sbjct: 1251 VNKVCQFLHAPTTSHWIAVKRILRYLNQCTSLGLHVHKSASTL-VHGYSDADGAGSIDDR 1309

Query: 827  XSTGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYTAAEISWLRSLFQELHVFLP- 1003
             STGG+ +FLG NL+SWSA+K  TVS SSTEAEY+ +A T AE+ W++++ +EL +  P 
Sbjct: 1310 KSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTVLKELGIESPK 1369

Query: 1004 APRIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRKELDVCYVCIQDQLVDIFT 1180
            A +IWCDN+ +  L++NPVF A+TKH+ VDYH+VRE+V +K L++ +V   DQ+ D FT
Sbjct: 1370 AAKIWCDNLGAKYLSANPVFHAKTKHIHVDYHFVRERVSQKLLEIDFVPSGDQVADGFT 1428



 Score =  102 bits (253), Expect(2) = 3e-99
 Identities = 52/90 (57%), Positives = 63/90 (70%)
 Frame = +1

Query: 1    LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
            +AV   W +RQLDVQN FLH  L E+VYM+QP GF  S+ P +V KL+++LYGLKQAPRA
Sbjct: 1036 IAVSRGWSLRQLDVQNDFLHGFLEEEVYMQQPPGFESSSKPDYVCKLNKALYGLKQAPRA 1095

Query: 181  *YQHFSDYLEDLGFTGSKADYSLFTLRRNG 270
             Y   S  L +LGF  SKAD SLF L + G
Sbjct: 1096 WYSRLSKKLTELGFEASKADTSLFFLNKGG 1125


>emb|CAN61230.1| hypothetical protein VITISV_010115 [Vitis vinifera]
          Length = 478

 Score =  293 bits (749), Expect(2) = 4e-99
 Identities = 157/299 (52%), Positives = 199/299 (66%), Gaps = 1/299 (0%)
 Frame = +2

Query: 287  LSIYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYFLGLEAVFNANGDLSLSQTKY 466
            L +YVDDI+ITGN+     T +  L + FS+KDLGPL YFLG+E   + NG L LSQ KY
Sbjct: 148  LLVYVDDIIITGNNVEAAQTFIQQLSQRFSLKDLGPLTYFLGVEVTSHTNG-LFLSQRKY 206

Query: 467  IVDLLHRTKFADVKLVSTPSQTRKKLSLYDGEPLSDLTEYRSVVGALQYLTLTRPDMSFA 646
            I DLL+RT   + K   TP  T   L+L  G PLSD TEYR+VVG+LQYL+LTRPD+++ 
Sbjct: 207  IADLLNRTHMTEAKPAPTPLATSPILTLQSGTPLSDPTEYRTVVGSLQYLSLTRPDIAYT 266

Query: 647  VNQVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSSVSLQLQAFSXXXXXXXXXXX 826
            VN++ QFMH+PT+ HW  VKR+LRYL  T DH +  + +S  L L AFS           
Sbjct: 267  VNKLSQFMHQPTSDHWNAVKRLLRYLCGTLDHDITLRRTS-PLALHAFSDSDWAGNKDDF 325

Query: 827  XSTGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYTAAEISWLRSLFQELHVFLP- 1003
             ST  Y I+LG N ISWS+KK RTV+ SSTEAEYR +A TAAEI W+ SL  EL V LP 
Sbjct: 326  TSTSAYIIYLGHNPISWSSKKQRTVARSSTEAEYRSVASTAAEIRWICSLLTELGVTLPQ 385

Query: 1004 APRIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRKELDVCYVCIQDQLVDIFT 1180
             P I+CDN+ + +L SNPVF +R KH+ +DYH++RE+V    L V ++   DQL D  T
Sbjct: 386  QPVIYCDNVGATNLCSNPVFHSRMKHVALDYHFIREQVQNGLLRVSHISASDQLADALT 444



 Score = 97.4 bits (241), Expect(2) = 4e-99
 Identities = 48/84 (57%), Positives = 57/84 (67%)
 Frame = +1

Query: 1   LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
           LAV   W +RQLDV NAFL  +LTEDV+M QP GF+D + P HV KL +++YGLKQAPRA
Sbjct: 54  LAVSQGWSLRQLDVNNAFLQGTLTEDVFMSQPPGFIDRDHPHHVCKLRKAIYGLKQAPRA 113

Query: 181 *YQHFSDYLEDLGFTGSKADYSLF 252
            Y     +L   GF  S AD SLF
Sbjct: 114 WYHELCQFLLQFGFINSIADTSLF 137


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  288 bits (738), Expect(2) = 5e-99
 Identities = 155/301 (51%), Positives = 201/301 (66%), Gaps = 3/301 (0%)
 Frame = +2

Query: 287  LSIYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYFLGLEAVFNANGDLSLSQTKY 466
            L IYVDDI++  +    +S L+ DL + F++KDLG LHYFLG+E V    G + +SQ KY
Sbjct: 1113 LLIYVDDIIVVSSRKEAVSALLQDLQKEFALKDLGDLHYFLGIE-VTKIPGGILMSQEKY 1171

Query: 467  IVDLLHRTKFADVKLVSTPSQTRKKLSLYDGEPL--SDLTEYRSVVGALQYLTLTRPDMS 640
              DLL R   +D K V+TP    +KL    G  L  +D T+YRS+VGALQYLTLTR D++
Sbjct: 1172 ASDLLKRVNMSDCKSVATPLSASEKLIAGKGTILGPNDATQYRSIVGALQYLTLTRLDIA 1231

Query: 641  FAVNQVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSSVSLQLQAFSXXXXXXXXX 820
            F+VN+VCQF+H PTT HW  VKRILRY+K     GL    SS S+ +  +S         
Sbjct: 1232 FSVNKVCQFLHNPTTEHWAAVKRILRYIKQCTGLGLRICKSS-SMIVSGYSDADWAGCLD 1290

Query: 821  XXXSTGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYTAAEISWLRSLFQELHVFL 1000
               STGG+ ++LG NL+SW+AKK  TVS SSTEAEY+ LA   AEI W+++L QEL++  
Sbjct: 1291 DRRSTGGFAVYLGDNLVSWNAKKQATVSRSSTEAEYKALANATAEIMWVQTLLQELNIVS 1350

Query: 1001 PA-PRIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRKELDVCYVCIQDQLVDIF 1177
            PA  ++WCDN+ +  L+ NPVF ARTKH+EVDYH+VRE+V RK L V YV   DQ+ D F
Sbjct: 1351 PAMAQLWCDNMGAKYLSFNPVFHARTKHIEVDYHFVRERVARKLLQVDYVSTNDQVADGF 1410

Query: 1178 T 1180
            T
Sbjct: 1411 T 1411



 Score =  101 bits (251), Expect(2) = 5e-99
 Identities = 51/84 (60%), Positives = 61/84 (72%)
 Frame = +1

Query: 1    LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
            +AV   W +RQLDVQNAFLH  L E+VYM+QP G+ + + P +V KL ++LYGLKQAPRA
Sbjct: 1019 IAVSRGWCLRQLDVQNAFLHGVLEEEVYMKQPPGYENPSTPDYVCKLDKALYGLKQAPRA 1078

Query: 181  *YQHFSDYLEDLGFTGSKADYSLF 252
             Y   S  L DLGF GSKAD SLF
Sbjct: 1079 WYSRLSGKLHDLGFKGSKADTSLF 1102


>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|31433472|gb|AAP54977.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1031

 Score =  298 bits (763), Expect(2) = 5e-99
 Identities = 155/299 (51%), Positives = 205/299 (68%), Gaps = 3/299 (1%)
 Frame = +2

Query: 293  IYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYFLGLEAVFNANGDLSLSQTKYIV 472
            +YVDDI++  +S    + L+ +L + F++KDLG LHYFLG+E V   N  + L+Q KY +
Sbjct: 714  VYVDDIIVASSSIVATNALLKNLNQEFALKDLGRLHYFLGIE-VKEVNDGIVLTQEKYAM 772

Query: 473  DLLHRTKFADVKLVSTPSQTRKKLSLYDGEPLS--DLTEYRSVVGALQYLTLTRPDMSFA 646
            D+L R   +D K V+TP    +KLS ++G PL   D T YRS+VGALQYLTLTRPD+SF+
Sbjct: 773  DVLKRVNMSDCKAVNTPLSISEKLSAHEGNPLGPEDSTRYRSLVGALQYLTLTRPDLSFS 832

Query: 647  VNQVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSSVSLQLQAFSXXXXXXXXXXX 826
            VN+VCQ++H  TT HW   KRILRYLK+T   GL   S S SL + AFS           
Sbjct: 833  VNKVCQYLHAATTKHWVAAKRILRYLKHTVKLGLKI-SKSNSLLVSAFSDADWAGCLDDR 891

Query: 827  XSTGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYTAAEISWLRSLFQELHVFLP- 1003
             STGG+ +F+GPNL+SWSA+K  TVS SSTEAEY+ LA   AEI W+++L  EL + +P 
Sbjct: 892  RSTGGFAVFIGPNLVSWSARKQATVSRSSTEAEYKALANATAEIMWIQTLLHELGIQVPK 951

Query: 1004 APRIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRKELDVCYVCIQDQLVDIFT 1180
              ++WCDNI +  + +NPVF ARTKH+EVDYH+VRE+V RK L V Y+  +DQ+ D FT
Sbjct: 952  IAKVWCDNIGAKYMTANPVFHARTKHIEVDYHFVRERVARKLLQVEYISTKDQVADGFT 1010



 Score = 91.7 bits (226), Expect(2) = 5e-99
 Identities = 47/84 (55%), Positives = 58/84 (69%)
 Frame = +1

Query: 1   LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
           +A+   W +RQLDVQNAFLH  L EDV+MRQP G+   +   +V KL ++LYGLKQAPRA
Sbjct: 620 IAISRGWTLRQLDVQNAFLHGVLEEDVFMRQPPGYEQKD--GYVCKLDKALYGLKQAPRA 677

Query: 181 *YQHFSDYLEDLGFTGSKADYSLF 252
            Y   S  L +LGF  SK+D SLF
Sbjct: 678 WYSRLSTKLHELGFKSSKSDTSLF 701


>emb|CAN67073.1| hypothetical protein VITISV_011746 [Vitis vinifera]
          Length = 879

 Score =  292 bits (747), Expect(2) = 5e-99
 Identities = 156/283 (55%), Positives = 193/283 (68%), Gaps = 3/283 (1%)
 Frame = +2

Query: 293  IYVDDILITGNSASHISTLV*DLGRLFSMKDLGPLHYFLGLEAVFNANGDLSLSQTKYIV 472
            IYVDDIL+TG   S I +L+  L   F MKDLGPL YFLG++A  +++G L L Q+KYI 
Sbjct: 598  IYVDDILVTGTXPSLIXSLIQKLQTEFKMKDLGPLGYFLGIQASRDSSG-LHLXQSKYIG 656

Query: 473  DLLHRTKFADVKLVSTPSQTRKKLSLYDGEPL--SDLTEYRSVVGALQYLTLTRPDMSFA 646
            DLL RTK A  K  S+P  T  KLS + GEPL  S +TEYR   GALQY TL RPD++F+
Sbjct: 657  DLLQRTKMAGAKPASSPCTTGLKLSTHVGEPLTASQITEYRQTXGALQYCTLNRPDIAFS 716

Query: 647  VNQVCQFMHKPTTVHWTTVKRILRYLKNTPDHGLFYQSSSVSLQLQAFSXXXXXXXXXXX 826
            VNQ+CQ MH P +VHWTT KR+L YLK T D GL+Y     +  LQAF            
Sbjct: 717  VNQLCQHMHCPNSVHWTTAKRVLCYLKGTIDLGLWYTKGEQT--LQAFCDSDWAGNPDDR 774

Query: 827  XSTGGYCIFLGPNLISWSAKKHRTVS*SSTEAEYRQLAYTAAEISWLRSLFQELHVFLP- 1003
             ST GY +F G  LISW+AKK   V+ SSTEAEYR L  T AE+ W+R L +ELH+ LP 
Sbjct: 775  RSTTGYGVFFGSCLISWTAKKQSVVARSSTEAEYRALTITTAELYWIRMLLKELHISLPT 834

Query: 1004 APRIWCDNISSISLASNPVFRARTKHLEVDYHYVREKVVRKEL 1132
            AP IWCDN  +++LASNPVF ARTKH+EVD+H++REKV  +++
Sbjct: 835  APTIWCDNSGALALASNPVFHARTKHIEVDFHFIREKVANRDI 877



 Score = 97.8 bits (242), Expect(2) = 5e-99
 Identities = 49/88 (55%), Positives = 58/88 (65%)
 Frame = +1

Query: 1   LAVHHHWPIRQLDVQNAFLHRSLTEDVYMRQPRGFVDSNFPAHVYKLHRSLYGLKQAPRA 180
           L+    W IR LDV NAFLH  L EDVYM QP+GFV+S FP +V KL++SLYGLKQAPRA
Sbjct: 502 LSXQFDWEIRXLDVSNAFLHGILLEDVYMEQPKGFVNSEFPDYVCKLNKSLYGLKQAPRA 561

Query: 181 *YQHFSDYLEDLGFTGSKADYSLFTLRR 264
            +   S  L + GF  S  D SLF   +
Sbjct: 562 WFMRLSQTLLEFGFLSSPVDASLFVYHK 589