BLASTX nr result
ID: Paeonia22_contig00027893
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia22_contig00027893
(406 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat... 76 5e-24
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia] 71 9e-24
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 70 2e-23
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia] 71 3e-23
gb|ABD33247.2| RNA-directed DNA polymerase (Reverse transcriptas... 75 4e-23
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 73 5e-23
ref|XP_004140807.1| PREDICTED: uncharacterized protein LOC101203... 75 5e-23
gb|ADB27474.1| gag-pol polyprotein [Melinis minutiflora] 73 6e-23
ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prun... 72 7e-23
emb|CAE04927.2| OSJNBa0017P10.4 [Oryza sativa Japonica Group] gi... 74 7e-23
ref|XP_004309164.1| PREDICTED: uncharacterized protein LOC101300... 72 7e-23
gb|ABD63193.1| gag-pol polyprotein, putative [Asparagus officina... 71 7e-23
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 71 9e-23
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 73 1e-22
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group] 72 2e-22
ref|XP_004161321.1| PREDICTED: uncharacterized protein LOC101223... 77 3e-22
ref|XP_007203327.1| hypothetical protein PRUPE_ppa020104mg, part... 72 3e-22
gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-... 72 3e-22
gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sati... 72 3e-22
gb|AAC28237.1| contains similarity to reverse trancriptase (Pfam... 70 4e-22
>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
Length = 1358
Score = 75.9 bits (185), Expect(2) = 5e-24
Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSR-HKHIHEFMNQVLKHLLNKFVVIYFDDILISS 8
+KGDEW TAFK K GL +WLV+PFGL+ MN VL++ + KFVV+YFDDILI S
Sbjct: 762 QKGDEWKTAFKTKNGLYEWLVMPFGLTNAPSTFMRLMNHVLRNFIGKFVVVYFDDILIYS 821
Query: 7 KN 2
K+
Sbjct: 822 KD 823
Score = 60.8 bits (146), Expect(2) = 5e-24
Identities = 28/46 (60%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Frame = -2
Query: 312 RGINN-TIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIKK 178
R INN T+KY +PIP++ DM D L GA IFSK+D+R YHQIR++K
Sbjct: 718 RAINNITVKYRYPIPRLDDMLDELHGAKIFSKIDLRRGYHQIRMQK 763
>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
Length = 1518
Score = 71.2 bits (173), Expect(2) = 9e-24
Identities = 34/61 (55%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSR-HKHIHEFMNQVLKHLLNKFVVIYFDDILISS 8
++GDEW TAFK K GL +WLV+PFGLS M +VL+ L KF V+YFDDIL+ S
Sbjct: 717 REGDEWKTAFKTKHGLYEWLVMPFGLSNAPSTFMRLMTEVLRPCLGKFAVVYFDDILVYS 776
Query: 7 K 5
K
Sbjct: 777 K 777
Score = 64.7 bits (156), Expect(2) = 9e-24
Identities = 29/47 (61%), Positives = 39/47 (82%), Gaps = 1/47 (2%)
Frame = -2
Query: 315 TRGINN-TIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIKK 178
+R INN T+KY FPIP++ DM D LSGA+IFSK+D+R YHQ+RI++
Sbjct: 672 SRAINNITVKYRFPIPRLDDMLDELSGASIFSKIDLRQGYHQVRIRE 718
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 70.5 bits (171), Expect(2) = 2e-23
Identities = 34/62 (54%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSR-HKHIHEFMNQVLKHLLNKFVVIYFDDILISS 8
K GDEW T FK K GL +WLV+PFGL+ MN+VL+ + +FVV+YFDDILI S
Sbjct: 863 KLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYS 922
Query: 7 KN 2
K+
Sbjct: 923 KS 924
Score = 63.9 bits (154), Expect(2) = 2e-23
Identities = 30/45 (66%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Frame = -2
Query: 312 RGINN-TIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIK 181
RGINN TI+Y PIP++ DM D LSG+TIFSK+D+R YHQIR+K
Sbjct: 819 RGINNITIRYRHPIPRLDDMLDELSGSTIFSKVDLRSGYHQIRMK 863
>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
Length = 1475
Score = 70.9 bits (172), Expect(2) = 3e-23
Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSR-HKHIHEFMNQVLKHLLNKFVVIYFDDILISS 8
K+GDEW TAFK K GL +WLV+PFGLS M +VL+ L +FVV+YFDDIL+ S
Sbjct: 705 KEGDEWKTAFKTKHGLYEWLVMPFGLSNAPSTFMRLMTEVLRPYLGRFVVVYFDDILVYS 764
Score = 63.2 bits (152), Expect(2) = 3e-23
Identities = 29/47 (61%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Frame = -2
Query: 315 TRGINN-TIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIKK 178
+R INN TIKY FPIP++ D+ D LSGA +FSK+D+R YHQ+RIK+
Sbjct: 660 SRAINNITIKYRFPIPRLDDILDELSGAQLFSKIDLRQGYHQVRIKE 706
>gb|ABD33247.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 386
Score = 74.7 bits (182), Expect(2) = 4e-23
Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSR-HKHIHEFMNQVLKHLLNKFVVIYFDDILISS 8
++GDEW TAFK K GL +WLV+PFGL+ MN +L+H + KFVV+YFDDIL+ S
Sbjct: 299 REGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHILRHFIGKFVVVYFDDILVYS 358
Query: 7 KN 2
N
Sbjct: 359 LN 360
Score = 58.9 bits (141), Expect(2) = 4e-23
Identities = 27/46 (58%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Frame = -2
Query: 312 RGINN-TIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIKK 178
R INN TIKY PIP++ DM D L GA +FSK+D++ YHQIRI++
Sbjct: 255 RAINNITIKYRHPIPRLDDMLDELHGACVFSKIDLKSGYHQIRIRE 300
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 73.2 bits (178), Expect(2) = 5e-23
Identities = 36/62 (58%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSR-HKHIHEFMNQVLKHLLNKFVVIYFDDILISS 8
K GDEW TAFK K GL +WLV+PFGL+ MN+VL+ + KFVV+YFDDILI S
Sbjct: 822 KLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGKFVVVYFDDILIYS 881
Query: 7 KN 2
K+
Sbjct: 882 KS 883
Score = 60.1 bits (144), Expect(2) = 5e-23
Identities = 28/45 (62%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Frame = -2
Query: 312 RGINN-TIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIK 181
R INN TI+Y PIP++ DM D LSGA +FSK+D+R YHQIR+K
Sbjct: 778 RAINNITIRYRHPIPRLDDMLDELSGAIVFSKVDLRSGYHQIRMK 822
>ref|XP_004140807.1| PREDICTED: uncharacterized protein LOC101203557 [Cucumis sativus]
Length = 1406
Score = 75.5 bits (184), Expect(2) = 5e-23
Identities = 36/62 (58%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSR-HKHIHEFMNQVLKHLLNKFVVIYFDDILISS 8
K GDEW TAFK EGL +WLV+PFGLS MNQ+L+ LN+F+V+YFDDILI S
Sbjct: 369 KPGDEWKTAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQILQPFLNQFIVVYFDDILIYS 428
Query: 7 KN 2
+
Sbjct: 429 SS 430
Score = 57.8 bits (138), Expect(2) = 5e-23
Identities = 27/46 (58%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Frame = -2
Query: 315 TRGINN-TIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIK 181
+R IN TIKY FPIP++ D+ D L A+IFSK+D++ YHQIRIK
Sbjct: 324 SRSINKITIKYRFPIPRLSDLLDQLGKASIFSKVDLKSGYHQIRIK 369
>gb|ADB27474.1| gag-pol polyprotein [Melinis minutiflora]
Length = 256
Score = 73.2 bits (178), Expect(2) = 6e-23
Identities = 36/62 (58%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSR-HKHIHEFMNQVLKHLLNKFVVIYFDDILISS 8
K GDEW TAFK K GL +WLV+PFGL+ MN+VL+ + KFVV+YFDDILI S
Sbjct: 51 KLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGKFVVVYFDDILIYS 110
Query: 7 KN 2
K+
Sbjct: 111 KS 112
Score = 60.1 bits (144), Expect(2) = 6e-23
Identities = 28/45 (62%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Frame = -2
Query: 312 RGINN-TIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIK 181
R INN TI+Y PIP++ DM D LSGA +FSK+D+R YHQIR+K
Sbjct: 7 RAINNITIRYRHPIPRLDDMLDELSGAIVFSKVDLRSGYHQIRMK 51
>ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prunus persica]
gi|462405925|gb|EMJ11389.1| hypothetical protein
PRUPE_ppa017790mg [Prunus persica]
Length = 1485
Score = 72.4 bits (176), Expect(2) = 7e-23
Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSR-HKHIHEFMNQVLKHLLNKFVVIYFDDILISS 8
+ GDEW TAFK K+GL +WLV+PFGLS MNQVL+ + FVV+YFDDILI S
Sbjct: 727 RPGDEWKTAFKSKDGLFEWLVMPFGLSNTPSTFMRLMNQVLRPFIGSFVVVYFDDILIYS 786
Score = 60.5 bits (145), Expect(2) = 7e-23
Identities = 27/46 (58%), Positives = 37/46 (80%), Gaps = 1/46 (2%)
Frame = -2
Query: 315 TRGINN-TIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIK 181
+R IN T+KY FPIP+++DM D LSG+ +FSK+D+R YHQIRI+
Sbjct: 682 SRAINKITVKYRFPIPRLEDMLDVLSGSKVFSKIDLRSGYHQIRIR 727
>emb|CAE04927.2| OSJNBa0017P10.4 [Oryza sativa Japonica Group]
gi|38345441|emb|CAE03293.2| OSJNBb0046P18.9 [Oryza sativa
Japonica Group]
Length = 1134
Score = 73.9 bits (180), Expect(2) = 7e-23
Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSRHKH-IHEFMNQVLKHLLNKFVVIYFDDILISS 8
K GDEW TAFK K GL +WLV+PFGL+ + MN+VL+ + KFVV+YFDDILI S
Sbjct: 1002 KLGDEWKTAFKTKFGLYEWLVMPFGLTNAPNTFMRLMNEVLRPFIEKFVVVYFDDILIYS 1061
Query: 7 KN 2
K+
Sbjct: 1062 KS 1063
Score = 58.9 bits (141), Expect(2) = 7e-23
Identities = 27/45 (60%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Frame = -2
Query: 312 RGINN-TIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIK 181
R INN TI+Y PIP++ DM D LSG+ +FSK+D+R YHQIR+K
Sbjct: 958 RAINNITIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGYHQIRMK 1002
>ref|XP_004309164.1| PREDICTED: uncharacterized protein LOC101300012 [Fragaria vesca
subsp. vesca]
Length = 1034
Score = 72.4 bits (176), Expect(2) = 7e-23
Identities = 37/62 (59%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSR-HKHIHEFMNQVLKHLLNKFVVIYFDDILISS 8
K GDEW TAFK K+GL +WLV+PFGLS MNQVLK + VV+YFDDILI S
Sbjct: 764 KLGDEWKTAFKSKDGLYEWLVMPFGLSNAPSTFMRVMNQVLKPYIGTCVVVYFDDILIYS 823
Query: 7 KN 2
K+
Sbjct: 824 KS 825
Score = 60.5 bits (145), Expect(2) = 7e-23
Identities = 28/46 (60%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Frame = -2
Query: 315 TRGINN-TIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIK 181
+R IN TIKY FPIP+++DM D L G+ +FSK+D+R YHQIRIK
Sbjct: 719 SRAINKITIKYRFPIPQLEDMLDVLGGSVVFSKIDLRSGYHQIRIK 764
>gb|ABD63193.1| gag-pol polyprotein, putative [Asparagus officinalis]
Length = 358
Score = 70.9 bits (172), Expect(2) = 7e-23
Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSR-HKHIHEFMNQVLKHLLNKFVVIYFDDILISS 8
+ GDEW TAFK K+GL +W+V+PFGL+ M QVL+ + KF+V+YFDDILI S
Sbjct: 50 RPGDEWKTAFKTKDGLYEWMVMPFGLTNAPSTFMRVMTQVLRPFMGKFLVVYFDDILIYS 109
Query: 7 KN 2
K+
Sbjct: 110 KS 111
Score = 62.0 bits (149), Expect(2) = 7e-23
Identities = 28/46 (60%), Positives = 37/46 (80%), Gaps = 1/46 (2%)
Frame = -2
Query: 315 TRGINN-TIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIK 181
+R IN T+KY FPIP++ DM D +SGATIFSK+D++ YHQIRI+
Sbjct: 5 SRAINKITVKYRFPIPRLDDMLDMMSGATIFSKIDLKSGYHQIRIR 50
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 70.9 bits (172), Expect(2) = 9e-23
Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSR-HKHIHEFMNQVLKHLLNKFVVIYFDDILISS 8
K GDEW TAFK K GL +WLV+PFGL+ MN+VL+ + +FVV+YFDDILI S
Sbjct: 875 KLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYS 934
Query: 7 KN 2
++
Sbjct: 935 RS 936
Score = 61.6 bits (148), Expect(2) = 9e-23
Identities = 29/45 (64%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Frame = -2
Query: 312 RGINN-TIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIK 181
RGINN TI+Y PIP++ DM D LSG+ IFSK+D+R YHQIR+K
Sbjct: 831 RGINNITIRYRHPIPRLDDMLDELSGSIIFSKVDLRSGYHQIRMK 875
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 73.2 bits (178), Expect(2) = 1e-22
Identities = 36/62 (58%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSR-HKHIHEFMNQVLKHLLNKFVVIYFDDILISS 8
K GDEW TAFK K GL +WLV+PFGL+ MN+VL+ + KFVV+YFDDILI S
Sbjct: 819 KLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDILIYS 878
Query: 7 KN 2
K+
Sbjct: 879 KS 880
Score = 58.9 bits (141), Expect(2) = 1e-22
Identities = 27/45 (60%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Frame = -2
Query: 312 RGINN-TIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIK 181
R INN TI+Y PIP++ DM D LSG+ +FSK+D+R YHQIR+K
Sbjct: 775 RAINNITIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGYHQIRMK 819
>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
Length = 2241
Score = 71.6 bits (174), Expect(2) = 2e-22
Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSR-HKHIHEFMNQVLKHLLNKFVVIYFDDILISS 8
K GDEW T FK K GL +WLV+PFGL+ MN+VL+ + KFVV+YFDDILI S
Sbjct: 913 KLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDILIYS 972
Query: 7 KN 2
K+
Sbjct: 973 KS 974
Score = 60.1 bits (144), Expect(2) = 2e-22
Identities = 25/41 (60%), Positives = 33/41 (80%)
Frame = -2
Query: 303 NNTIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIK 181
NNTI+Y PIP++ DM D LSG+ +FSK+D+R YHQIR+K
Sbjct: 873 NNTIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGYHQIRMK 913
>ref|XP_004161321.1| PREDICTED: uncharacterized protein LOC101223713 [Cucumis sativus]
Length = 645
Score = 76.6 bits (187), Expect(2) = 3e-22
Identities = 35/62 (56%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSRHKH-IHEFMNQVLKHLLNKFVVIYFDDILISS 8
+ GDEW T FK KEGL +W+V+PFGLS + MNQ+L LNKF+V+YFDDIL+ S
Sbjct: 572 RPGDEWKTTFKTKEGLFEWMVMPFGLSNAPNTFMRLMNQILHPFLNKFIVVYFDDILVYS 631
Query: 7 KN 2
N
Sbjct: 632 TN 633
Score = 54.3 bits (129), Expect(2) = 3e-22
Identities = 25/46 (54%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Frame = -2
Query: 315 TRGINN-TIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIK 181
+R IN T+KY F IP+I D+ D L A+IFSK+D++ YHQIRI+
Sbjct: 527 SRAINRITVKYRFSIPRISDLLDQLGKASIFSKIDLKSGYHQIRIR 572
>ref|XP_007203327.1| hypothetical protein PRUPE_ppa020104mg, partial [Prunus persica]
gi|462398858|gb|EMJ04526.1| hypothetical protein
PRUPE_ppa020104mg, partial [Prunus persica]
Length = 428
Score = 72.0 bits (175), Expect(2) = 3e-22
Identities = 33/62 (53%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSR-HKHIHEFMNQVLKHLLNKFVVIYFDDILISS 8
+ GDEW TAFK ++GL +WLV+PFGL+ MNQV + + KFVV+YFDDIL+ S
Sbjct: 45 RPGDEWKTAFKTRDGLFEWLVMPFGLTNVPSTFMRLMNQVFRPFIGKFVVVYFDDILVYS 104
Query: 7 KN 2
N
Sbjct: 105 HN 106
Score = 58.9 bits (141), Expect(2) = 3e-22
Identities = 27/45 (60%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Frame = -2
Query: 312 RGINN-TIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIK 181
R IN T+KY FPIP++ M DHLSGA IF K+D+R YHQIR++
Sbjct: 1 RAINKITVKYRFPIPRLDHMLDHLSGAKIFLKIDLRSGYHQIRMR 45
>gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|108864301|gb|ABA93040.2|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1748
Score = 71.6 bits (174), Expect(2) = 3e-22
Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSR-HKHIHEFMNQVLKHLLNKFVVIYFDDILISS 8
K GDEW T FK K GL +WLV+PFGL+ MN+VL+ + KFVV+YFDDILI S
Sbjct: 1161 KLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDILIYS 1220
Query: 7 KN 2
K+
Sbjct: 1221 KS 1222
Score = 58.9 bits (141), Expect(2) = 3e-22
Identities = 27/45 (60%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Frame = -2
Query: 312 RGINN-TIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIK 181
R INN TI+Y PIP++ DM D LSG+ +FSK+D+R YHQIR+K
Sbjct: 1117 RAINNITIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGYHQIRMK 1161
>gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
Length = 1739
Score = 71.6 bits (174), Expect(2) = 3e-22
Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSR-HKHIHEFMNQVLKHLLNKFVVIYFDDILISS 8
K GDEW T FK K GL +WLV+PFGL+ MN+VL+ + KFVV+YFDDILI S
Sbjct: 1152 KLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDILIYS 1211
Query: 7 KN 2
K+
Sbjct: 1212 KS 1213
Score = 58.9 bits (141), Expect(2) = 3e-22
Identities = 27/45 (60%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Frame = -2
Query: 312 RGINN-TIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIK 181
R INN TI+Y PIP++ DM D LSG+ +FSK+D+R YHQIR+K
Sbjct: 1108 RAINNITIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGYHQIRMK 1152
>gb|AAC28237.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
96.80) and CCHC-type zinc fingers (Pfam: zf-CCHC.hmm,
score: 14.43) [Arabidopsis thaliana]
gi|7267179|emb|CAB77891.1| putative transposon protein
[Arabidopsis thaliana]
Length = 315
Score = 70.5 bits (171), Expect(2) = 4e-22
Identities = 34/62 (54%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Frame = -1
Query: 184 KKGDEWNTAFKPKEGLCDWLVVPFGLSR-HKHIHEFMNQVLKHLLNKFVVIYFDDILISS 8
++GDEW TAFK K+GL + LV+PFGL+ MNQVL+ + KFVV+YFDDILI +
Sbjct: 202 REGDEWKTAFKTKQGLYECLVMPFGLTNAPSTFMRLMNQVLRSFIGKFVVVYFDDILIYN 261
Query: 7 KN 2
K+
Sbjct: 262 KS 263
Score = 60.1 bits (144), Expect(2) = 4e-22
Identities = 28/46 (60%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Frame = -2
Query: 312 RGINN-TIKYSFPIPKIKDMFDHLSGATIFSKLDMRCPYHQIRIKK 178
R INN TIKY PIP++ DM D LSGA IFSK+D+R YHQ+R+++
Sbjct: 158 RAINNITIKYRHPIPRLYDMLDELSGAIIFSKVDLRSGYHQVRMRE 203