BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00023838
         (1254 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   152   1e-94
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   152   6e-94
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     150   1e-93
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     154   3e-91
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc...   153   1e-90
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     150   5e-88
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   152   9e-88
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   151   1e-87
gb|AFB73912.1| polyprotein [Citrus sinensis]                          149   7e-87
gb|AFB73911.1| polyprotein [Citrus sinensis]                          149   8e-86
emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group]        148   3e-84
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             141   7e-84
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  143   3e-83
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              146   3e-83
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              146   3e-83
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   149   6e-83
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              146   6e-83
emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]   140   8e-83
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        143   4e-82
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              146   9e-81

>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  152 bits (383), Expect(4) = 1e-94
 Identities = 72/123 (58%), Positives = 92/123 (74%)
 Frame = +1

Query: 460  RYKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFHGTL 639
            RYKAR++AKGY+Q  GID+N+VFSPV+KHSSIRT L +V   D EL Q+DVK AF HG L
Sbjct: 1086 RYKARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGEL 1145

Query: 640  DEEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFDNVS 819
            +E+IYM QP+GF V G EN  C+L  SLYGLK   R WYK+FD+FM +Q++  S +D+  
Sbjct: 1146 EEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCV 1205

Query: 820  TLR 828
             L+
Sbjct: 1206 YLK 1208



 Score =  145 bits (367), Expect(4) = 1e-94
 Identities = 79/126 (62%), Positives = 99/126 (78%)
 Frame = +3

Query: 813  CVYLKKLQDGTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            CVYLK + DG+ IYLLLYV+DMLI +K K EI +LKA LSSEFEMKDLG AKKILGMEI 
Sbjct: 1204 CVYLKVV-DGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEIT 1262

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            R R   +++LSQK Y++KVL++F M  + K VSTPLA HF+LS+ + P +D + EYM+ V
Sbjct: 1263 RKRHSFKLYLSQKGYIEKVLRRFNM-HDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRV 1321

Query: 1173 PYASAV 1190
            PY+SAV
Sbjct: 1322 PYSSAV 1327



 Score = 82.0 bits (201), Expect(4) = 1e-94
 Identities = 49/107 (45%), Positives = 61/107 (57%), Gaps = 8/107 (7%)
 Frame = +2

Query: 158  PSESITTSRPKRNIQKPARY---TYMVAYALPITEDDILYN-----YKEALKSMESNKWK 313
            P  SI   RPKRNI+ P RY     +VAYAL + E+ I  N     Y EA+ S + N+W 
Sbjct: 981  PKRSIAKDRPKRNIKPPQRYIEEANIVAYALSVAEE-IEGNAEPSTYSEAIVSDDCNRWI 1039

Query: 314  MTMDEKMRSLHQN*T*KLVPLSKGKKSIGCKWVFARKEGAPGKDSIR 454
              M ++M SL +N T +LV L K KK I CKW+F RKEG    D  R
Sbjct: 1040 TAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEAR 1086



 Score = 38.1 bits (87), Expect(4) = 1e-94
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +1

Query: 1189 LIYAMVCTRPDLSQVVSMVSRY 1254
            L+YAMVC+RPDLS  +S+VSRY
Sbjct: 1330 LMYAMVCSRPDLSHALSVVSRY 1351


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  152 bits (384), Expect(4) = 6e-94
 Identities = 71/117 (60%), Positives = 89/117 (76%)
 Frame = +1

Query: 460  RYKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFHGTL 639
            +YKARVVA+G+ Q+EG+DYNE+FSPV++H+SIR  L +V   +LEL QLDVK AF HG L
Sbjct: 854  KYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGEL 913

Query: 640  DEEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFD 810
            +EEIYM QP+GF+V G EN  CKL  SLYGLK   R WYK+FD++M    YT S +D
Sbjct: 914  EEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYD 970



 Score =  147 bits (372), Expect(4) = 6e-94
 Identities = 72/126 (57%), Positives = 100/126 (79%)
 Frame = +3

Query: 813  CVYLKKLQDGTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            CVY  +L D +FIYL+LYV+DMLI +K K +I +LK  LS+EFEMKDLG A+KILGMEI 
Sbjct: 972  CVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEII 1031

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            RDR +++++LSQ++Y+QKVL +FGM  ++K + TP A +  L+A  +P ++EE+EYM+ V
Sbjct: 1032 RDRERRKLFLSQRSYIQKVLARFGM-SSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRV 1090

Query: 1173 PYASAV 1190
            PYASAV
Sbjct: 1091 PYASAV 1096



 Score = 77.4 bits (189), Expect(4) = 6e-94
 Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 9/137 (6%)
 Frame = +2

Query: 71   IIHPENEVNDHNERSVEEPELASTPEIRYPSE---SITTSRPKR-NIQKPARYTY--MVA 232
            +I  E+++ +  E   E       PE   PS+   SI   RP+R  ++ P RY +  MV 
Sbjct: 719  VIQNESDLKEPEEEDQEPQTETDIPE-SMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVG 777

Query: 233  YALPITED---DILYNYKEALKSMESNKWKMTMDEKMRSLHQN*T*KLVPLSKGKKSIGC 403
            YAL + E+        YKEA+ S +S KW   M ++M SLH+N T  LV    G+K I C
Sbjct: 778  YALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITC 837

Query: 404  KWVFARKEGAPGKDSIR 454
            KWVF +KEG    + ++
Sbjct: 838  KWVFKKKEGISPAEGVK 854



 Score = 38.1 bits (87), Expect(4) = 6e-94
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +1

Query: 1189 LIYAMVCTRPDLSQVVSMVSRY 1254
            L+YAMVCTRPDL+  VS+VSR+
Sbjct: 1099 LMYAMVCTRPDLAHAVSVVSRF 1120


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  150 bits (379), Expect(4) = 1e-93
 Identities = 73/123 (59%), Positives = 92/123 (74%)
 Frame = +1

Query: 460  RYKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFHGTL 639
            RYKAR+VAKGY+Q  GID+N+VFSPV+KHSSIRT L +V   D EL Q++VK AF HG L
Sbjct: 851  RYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGEL 910

Query: 640  DEEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFDNVS 819
            +E+IYM QPEGF V G EN  C+L  SLYGLK   R WYK+FD+FM +Q++  S +D+  
Sbjct: 911  EEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCV 970

Query: 820  TLR 828
             L+
Sbjct: 971  YLK 973



 Score =  148 bits (374), Expect(4) = 1e-93
 Identities = 79/126 (62%), Positives = 101/126 (80%)
 Frame = +3

Query: 813  CVYLKKLQDGTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            CVYLK + DG+ IYLLLYV+DMLI +K K EI++LKA LSSEFEMKDLG AKKILGMEI 
Sbjct: 969  CVYLKVV-DGSVIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEIT 1027

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            R+R   +++LSQK Y++KVL++F M  + K VSTPLA HF+LS+ + P +D + EYM+ V
Sbjct: 1028 RERHSGKLYLSQKGYIEKVLRRFNM-HDAKPVSTPLAAHFRLSSDLCPLSDYDIEYMSRV 1086

Query: 1173 PYASAV 1190
            PY+SAV
Sbjct: 1087 PYSSAV 1092



 Score = 79.3 bits (194), Expect(4) = 1e-93
 Identities = 46/106 (43%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
 Frame = +2

Query: 158  PSESITTSRPKRNIQKPARY---TYMVAYALPITE----DDILYNYKEALKSMESNKWKM 316
            P  SI   +PKRNI+ P RY     +VAYAL + E    +     Y EA+ S + N+W  
Sbjct: 746  PKRSIAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWIT 805

Query: 317  TMDEKMRSLHQN*T*KLVPLSKGKKSIGCKWVFARKEGAPGKDSIR 454
             M ++M SL +N T +LV L K KK I CKW+F RKEG    D  R
Sbjct: 806  AMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEAR 851



 Score = 36.2 bits (82), Expect(4) = 1e-93
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +1

Query: 1189 LIYAMVCTRPDLSQVVSMVSRY 1254
            L+YAMVC RPDLS  +S+V+RY
Sbjct: 1095 LMYAMVCCRPDLSHALSVVNRY 1116


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  154 bits (388), Expect(4) = 3e-91
 Identities = 74/123 (60%), Positives = 92/123 (74%)
 Frame = +1

Query: 460  RYKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFHGTL 639
            RYKAR+VAKGY+Q  GID+N+VFSPV+KHSSIRT L +V   D EL Q+DVK AF HG L
Sbjct: 788  RYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGEL 847

Query: 640  DEEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFDNVS 819
            +E+IYM QPEGF V G EN  C+L  SLYGLK   R WYK+FD+FM +Q++  S +D+  
Sbjct: 848  EEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCV 907

Query: 820  TLR 828
             L+
Sbjct: 908  YLK 910



 Score =  140 bits (352), Expect(4) = 3e-91
 Identities = 77/126 (61%), Positives = 97/126 (76%)
 Frame = +3

Query: 813  CVYLKKLQDGTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            CVYLK + DG+ IYLLLYV+DMLI +K K EI +LKA LSSEFEMKDLG AKKILGMEI 
Sbjct: 906  CVYLKVV-DGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEIT 964

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            R+R   +++LSQK Y++KVL +F M  + K VST LA HF+LS+ + P +  + EYM+ V
Sbjct: 965  RERHSGKLYLSQKCYIEKVLHRFNM-HDAKLVSTLLAAHFRLSSDLCPQSAYDIEYMSRV 1023

Query: 1173 PYASAV 1190
            PY+SAV
Sbjct: 1024 PYSSAV 1029



 Score = 74.3 bits (181), Expect(4) = 3e-91
 Identities = 45/107 (42%), Positives = 59/107 (55%), Gaps = 8/107 (7%)
 Frame = +2

Query: 158  PSESITTSRPKRNIQKPARY---TYMVAYALPITEDDILYN-----YKEALKSMESNKWK 313
            P  SI   RPKRN + P RY     +VAYAL + E+ I  N     Y +A+ S + N+W 
Sbjct: 683  PKRSIAKDRPKRNTKPPRRYIEEANIVAYALSVAEE-IEGNAEPSTYSDAIVSDDCNRWI 741

Query: 314  MTMDEKMRSLHQN*T*KLVPLSKGKKSIGCKWVFARKEGAPGKDSIR 454
              M ++M SL +N + +L  L K KK I CKW+F RKEG    D  R
Sbjct: 742  TAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEAR 788



 Score = 38.1 bits (87), Expect(4) = 3e-91
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +1

Query: 1189 LIYAMVCTRPDLSQVVSMVSRY 1254
            L+YAMVC+RPDLS  +S+VSRY
Sbjct: 1032 LMYAMVCSRPDLSHALSVVSRY 1053


>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 983

 Score =  153 bits (386), Expect(3) = 1e-90
 Identities = 73/123 (59%), Positives = 91/123 (73%)
 Frame = +1

Query: 460 RYKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFHGTL 639
           RYKAR+VAKGY+Q   ID+N+VFSP++KHSSIRT L +V   D EL Q+DVK AF HG L
Sbjct: 621 RYKARLVAKGYSQIPSIDFNDVFSPIVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGEL 680

Query: 640 DEEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFDNVS 819
           +E+IYM QPEGF V G EN  C+L  SLYGLK   R WYK+FD+FM +Q++  S +DN  
Sbjct: 681 EEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDNCV 740

Query: 820 TLR 828
            L+
Sbjct: 741 YLK 743



 Score =  146 bits (369), Expect(3) = 1e-90
 Identities = 78/126 (61%), Positives = 100/126 (79%)
 Frame = +3

Query: 813  CVYLKKLQDGTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            CVYLK + DG+ IYLLLYV+DMLI +K K EI++LKA LSSEFEMKDLG AKKILGMEI 
Sbjct: 739  CVYLKVV-DGSAIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEIT 797

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            R+R   +++LSQK Y++KVL++F M  + K VSTPLA HF+ S+ + P +D + EYM+ V
Sbjct: 798  RERHSGKLYLSQKGYIEKVLRRFNM-HDAKPVSTPLAAHFRSSSDLCPQSDYDIEYMSRV 856

Query: 1173 PYASAV 1190
            PY+SAV
Sbjct: 857  PYSSAV 862



 Score = 84.0 bits (206), Expect(3) = 1e-90
 Identities = 50/107 (46%), Positives = 63/107 (58%), Gaps = 8/107 (7%)
 Frame = +2

Query: 158 PSESITTSRPKRNIQKPARY---TYMVAYALPITEDDILYN-----YKEALKSMESNKWK 313
           P  SI   +PKRNI+ P RY     +VAYAL + E+ I  N     Y EA+ S + N+W 
Sbjct: 516 PKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEE-IEGNAEPSIYSEAIVSDDCNRWI 574

Query: 314 MTMDEKMRSLHQN*T*KLVPLSKGKKSIGCKWVFARKEGAPGKDSIR 454
            TM ++M SL +N T +LV L K KKSI CKW+F RKEG    D  R
Sbjct: 575 TTMHDEMESLEKNHTWELVKLPKEKKSIRCKWIFKRKEGMSPSDEAR 621


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  150 bits (380), Expect(4) = 5e-88
 Identities = 69/116 (59%), Positives = 87/116 (75%)
 Frame = +1

Query: 463  YKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFHGTLD 642
            YKAR+VAKGY+QKEG+DY+E+FSPV+KH+SIR  L +  Q+D+E+ Q+DVK AF HG L+
Sbjct: 846  YKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLE 905

Query: 643  EEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFD 810
            E+IYM+QPEGF   G EN  C+L  SLYGLK   R WYK FD +M    YT  Q+D
Sbjct: 906  EDIYMSQPEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYD 961



 Score =  133 bits (335), Expect(4) = 5e-88
 Identities = 68/126 (53%), Positives = 89/126 (70%)
 Frame = +3

Query: 813  CVYLKKLQDGTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            CVY    +DG  I LLLYV+DMLI  +  ++I +LK  L +EF+MKDLG A+KILG+EIR
Sbjct: 963  CVYYHVFEDGKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEIR 1022

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            RDR   ++WLSQ+ Y+ K+L++F M    K VS PLA HF+LSA   PS  +E + M +V
Sbjct: 1023 RDRNAGKIWLSQEKYIMKILERFNM-AEAKVVSIPLAAHFRLSAEQRPSDQKEIDMMKNV 1081

Query: 1173 PYASAV 1190
            PYASAV
Sbjct: 1082 PYASAV 1087



 Score = 72.4 bits (176), Expect(4) = 5e-88
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 24/147 (16%)
 Frame = +2

Query: 83   ENEVNDHNERSVEEPELASTPEIRYPSE--------------------SITTSRPKRNIQ 202
            E     ++E ++EEPE    P +    E                    SI   +PKRN +
Sbjct: 699  EQNEQGNDEVAIEEPEHQQQPTVMAQVEQSPQRGQNSPIPQAPESFKRSIALDKPKRNRK 758

Query: 203  KPARYTYM----VAYALPITEDDILYNYKEALKSMESNKWKMTMDEKMRSLHQN*T*KLV 370
               R+ +     V+ AL I++ D    Y++A++S+ES  W   M E+M SLH+N   +LV
Sbjct: 759  PIQRFGFEPEEDVSRALSISQGDPT-TYEDAIESVESAGWIGAMTEEMESLHKNSVWELV 817

Query: 371  PLSKGKKSIGCKWVFARKEGAPGKDSI 451
            P  K +K +GCKWVF +KEG    D+I
Sbjct: 818  PKPKERKLVGCKWVFRKKEGIHEDDAI 844



 Score = 38.9 bits (89), Expect(4) = 5e-88
 Identities = 15/22 (68%), Positives = 21/22 (95%)
 Frame = +1

Query: 1189 LIYAMVCTRPDLSQVVSMVSRY 1254
            L+YAM+CTRPDL+Q +S+VS+Y
Sbjct: 1090 LMYAMICTRPDLAQAMSVVSKY 1111


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  152 bits (384), Expect(4) = 9e-88
 Identities = 73/118 (61%), Positives = 91/118 (77%)
 Frame = +1

Query: 460  RYKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFHGTL 639
            R+KAR+VAKG++Q  G+DYN+VFSPV+KHSSIRT   +V   DLEL QLDVK AF HG L
Sbjct: 869  RFKARLVAKGFSQIVGVDYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGEL 928

Query: 640  DEEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFDN 813
            +EEIYM+QPEGF V G E++ CKL  SLYGLK   R WYK+FD+FM +  +  S+FD+
Sbjct: 929  EEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDS 986



 Score =  140 bits (354), Expect(4) = 9e-88
 Identities = 77/126 (61%), Positives = 99/126 (78%)
 Frame = +3

Query: 813  CVYLKKLQDGTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            CVY+K + +G+ IYLLLYV+D+LI +KSK +I  LK  LSSEF+MKDLG AKKILGMEI 
Sbjct: 987  CVYIKFV-NGSPIYLLLYVDDILIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEIT 1045

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            RD+    ++LSQ++Y++KVLQ F M  + K VSTP+APHFKLSA    +TDE+ EYM+ V
Sbjct: 1046 RDKNSGLLFLSQQSYIKKVLQCFNM-HDAKPVSTPIAPHFKLSALQCANTDEDVEYMSRV 1104

Query: 1173 PYASAV 1190
            PY+SAV
Sbjct: 1105 PYSSAV 1110



 Score = 63.2 bits (152), Expect(4) = 9e-88
 Identities = 46/122 (37%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
 Frame = +2

Query: 86   NEVNDHNERSVEEPELASTPEIRYPSESITTSRPKRNIQKPARYTY---MVAYALPITE- 253
            N+VND  + S         P ++   E I   R KR+   P R      MV YA    E 
Sbjct: 748  NDVNDTVQHS--------PPVLQPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFSCAEQ 799

Query: 254  -DDILY--NYKEALKSMESNKWKMTMDEKMRSLHQN*T*KLVPLSKGKKSIGCKWVFARK 424
             ++ L    Y EA+ S +  KW   M E+M+SL +N T +LV L K KK + CKW+F RK
Sbjct: 800  VENTLEPATYTEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRK 859

Query: 425  EG 430
            EG
Sbjct: 860  EG 861



 Score = 38.5 bits (88), Expect(4) = 9e-88
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +1

Query: 1189 LIYAMVCTRPDLSQVVSMVSRY 1254
            L+YAMVC+RPDLS  +S+VSRY
Sbjct: 1113 LMYAMVCSRPDLSHAMSLVSRY 1134


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  151 bits (382), Expect(4) = 1e-87
 Identities = 72/118 (61%), Positives = 90/118 (76%)
 Frame = +1

Query: 460  RYKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFHGTL 639
            R+K R+VAKG++Q  G+DYN+VFSPV+KHSSIRT   +VT  DLEL QLDVK  F HG L
Sbjct: 869  RFKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGEL 928

Query: 640  DEEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFDN 813
            +EEIYM+QPEGF V G E++ CKL  SLYGLK   R WYK+FD+FM +  +  S+FD+
Sbjct: 929  EEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDS 986



 Score =  146 bits (368), Expect(4) = 1e-87
 Identities = 80/126 (63%), Positives = 100/126 (79%)
 Frame = +3

Query: 813  CVYLKKLQDGTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            CVY+K + +G+ IYLLLYV+DMLI +KSK +I  LK  LSSEF+MKDLG AKKILGMEI 
Sbjct: 987  CVYIKFV-NGSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEIT 1045

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            RDR    ++LSQ++Y++KVLQ+F M  + K VSTP+APHFKLSA    STDE+ EYM+ V
Sbjct: 1046 RDRNSGLLFLSQQSYIKKVLQRFNM-HDAKPVSTPIAPHFKLSALQCASTDEDVEYMSRV 1104

Query: 1173 PYASAV 1190
            PY+SAV
Sbjct: 1105 PYSSAV 1110



 Score = 61.2 bits (147), Expect(4) = 1e-87
 Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
 Frame = +2

Query: 86   NEVNDHNERSVEEPELASTPEIRYPS-ESITTSRPKRNIQKPARYT-------YMVAYAL 241
            N+VND  + S         P +  P  E I   R KR+   P R         Y  +YA 
Sbjct: 748  NDVNDTVQHS---------PSVLQPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFSYAE 798

Query: 242  PITEDDILYNYKEALKSMESNKWKMTMDEKMRSLHQN*T*KLVPLSKGKKSIGCKWVFAR 421
             +        Y EA+ S +  KW   + E+M+SL +N T +LV L K KK + CKW+F R
Sbjct: 799  QVENTLEPATYTEAVVSGDREKWISAIQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKR 858

Query: 422  KEG 430
            KEG
Sbjct: 859  KEG 861



 Score = 35.4 bits (80), Expect(4) = 1e-87
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +1

Query: 1189 LIYAMVCTRPDLSQVVSMVSRY 1254
            L+YAMVC+ PDLS  +S+VSRY
Sbjct: 1113 LMYAMVCSWPDLSHAMSLVSRY 1134


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  149 bits (376), Expect(4) = 7e-87
 Identities = 70/129 (54%), Positives = 92/129 (71%)
 Frame = +1

Query: 451  QIDRYKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFH 630
            Q++RY+AR+V KGYAQKEGID+NE+FSPV++ +++R  L +   FDL L QLDVK AF H
Sbjct: 851  QVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLH 910

Query: 631  GTLDEEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFD 810
            G L+EEIYM QPEGF   G EN  C+LN SLYGLK   R WYK+FD+F+ +  Y     D
Sbjct: 911  GELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSD 970

Query: 811  NVSTLRNFK 837
            + +  + F+
Sbjct: 971  HCAYYKRFE 979



 Score =  145 bits (365), Expect(4) = 7e-87
 Identities = 73/126 (57%), Positives = 94/126 (74%)
 Frame = +3

Query: 813  CVYLKKLQDGTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            C Y K+ +D  FI LLLYV+DML+   +K  I  LKA L+ EFEMKDLG A KILGM+I 
Sbjct: 972  CAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIH 1031

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            RDR  +++WLSQK YL+K+L++F M  + KS+STPL  +FKLS+SM PS + ER+ M+ V
Sbjct: 1032 RDRNNRKIWLSQKNYLKKILRRFNM-QDCKSISTPLPVNFKLSSSMCPSNEAERKEMSRV 1090

Query: 1173 PYASAV 1190
            PYASAV
Sbjct: 1091 PYASAV 1096



 Score = 60.8 bits (146), Expect(4) = 7e-87
 Identities = 44/129 (34%), Positives = 66/129 (51%), Gaps = 4/129 (3%)
 Frame = +2

Query: 77   HPENEVNDHN--ERSVEEPELASTPEIRYPSESITTSRPKRNIQKPARYT--YMVAYALP 244
            +PEN  +     E   +EP  +  PE+R       ++R +R     + Y     VAY L 
Sbjct: 733  NPENSDSSEAAPEHEEQEPVESEAPEVR------RSTRERRPPTWHSEYVTEINVAYCL- 785

Query: 245  ITEDDILYNYKEALKSMESNKWKMTMDEKMRSLHQN*T*KLVPLSKGKKSIGCKWVFARK 424
            +TED     + EAL S++   W   M E++ +LH+N T +LVPL  G+K+IG KWV+  K
Sbjct: 786  LTEDGEPSTFHEALNSLDVALWMTAMQEEIEALHKNKTWELVPLPHGRKAIGNKWVYKIK 845

Query: 425  EGAPGKDSI 451
                G D +
Sbjct: 846  R--DGNDQV 852



 Score = 36.6 bits (83), Expect(4) = 7e-87
 Identities = 14/22 (63%), Positives = 19/22 (86%)
 Frame = +1

Query: 1189 LIYAMVCTRPDLSQVVSMVSRY 1254
            L++AM+CTRPD++Q V  VSRY
Sbjct: 1099 LMFAMICTRPDIAQAVGAVSRY 1120


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  149 bits (376), Expect(4) = 8e-86
 Identities = 70/129 (54%), Positives = 92/129 (71%)
 Frame = +1

Query: 451  QIDRYKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFH 630
            Q++RY+AR+V KGYAQKEGID+NE+FSPV++ +++R  L +   FDL L QLDVK AF H
Sbjct: 851  QVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLH 910

Query: 631  GTLDEEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFD 810
            G L+EEIYM QPEGF   G EN  C+LN SLYGLK   R WYK+FD+F+ +  Y     D
Sbjct: 911  GELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRYWYKRFDSFIMSLGYNRLSSD 970

Query: 811  NVSTLRNFK 837
            + +  + F+
Sbjct: 971  HCAYYKRFE 979



 Score =  140 bits (354), Expect(4) = 8e-86
 Identities = 72/126 (57%), Positives = 92/126 (73%)
 Frame = +3

Query: 813  CVYLKKLQDGTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            C Y K+ +D  FI LLLYV+DML+   +K  I  LKA L+ EFEMKDLG A KILGM+I 
Sbjct: 972  CAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIH 1031

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            RDR   ++WLSQK YL+K+L++F M  + KS+ST L  +FKLS+SM PS + ER+ M+ V
Sbjct: 1032 RDRNNMKIWLSQKNYLKKILRRFNM-QDCKSISTSLPVNFKLSSSMCPSNEAERKEMSRV 1090

Query: 1173 PYASAV 1190
            PYASAV
Sbjct: 1091 PYASAV 1096



 Score = 60.8 bits (146), Expect(4) = 8e-86
 Identities = 44/129 (34%), Positives = 66/129 (51%), Gaps = 4/129 (3%)
 Frame = +2

Query: 77   HPENEVNDHN--ERSVEEPELASTPEIRYPSESITTSRPKRNIQKPARYT--YMVAYALP 244
            +PEN  +     E   +EP  +  PE+R       ++R +R     + Y     VAY L 
Sbjct: 733  NPENSDSSEAAPEHEEQEPVESEAPEVR------RSTRERRPPTWHSEYVTEINVAYCL- 785

Query: 245  ITEDDILYNYKEALKSMESNKWKMTMDEKMRSLHQN*T*KLVPLSKGKKSIGCKWVFARK 424
            +TED     + EAL S +   W   M E++ +LH+N T +LVPL +G+K+IG KWV+  K
Sbjct: 786  LTEDGEPSTFHEALNSSDVALWMTAMQEEIEALHKNKTWELVPLPRGRKAIGNKWVYKIK 845

Query: 425  EGAPGKDSI 451
                G D +
Sbjct: 846  R--DGNDQV 852



 Score = 37.4 bits (85), Expect(4) = 8e-86
 Identities = 14/22 (63%), Positives = 20/22 (90%)
 Frame = +1

Query: 1189 LIYAMVCTRPDLSQVVSMVSRY 1254
            L++AM+CTRPD++Q V +VSRY
Sbjct: 1099 LMFAMICTRPDIAQAVGVVSRY 1120


>emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group]
          Length = 576

 Score =  148 bits (374), Expect(4) = 3e-84
 Identities = 71/118 (60%), Positives = 90/118 (76%)
 Frame = +1

Query: 460 RYKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFHGTL 639
           R+KAR+VAKG++Q  G+DYN+VFSPV+KHSSIRT   +V   DLEL QLDVK  F HG L
Sbjct: 202 RFKARLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVAMDDLELKQLDVKTTFLHGEL 261

Query: 640 DEEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFDN 813
           ++EIYM+QPEGF V G E++ CKL  SLYGLK   R WYK+FD+FM +  +  S+FD+
Sbjct: 262 EDEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKWSEFDS 319



 Score =  134 bits (337), Expect(4) = 3e-84
 Identities = 75/126 (59%), Positives = 96/126 (76%)
 Frame = +3

Query: 813  CVYLKKLQDGTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            CVY+K + +G+ IYLLLYV+DMLI +KSK +I  LK  LSSEF+MKDLG AKKILGMEI 
Sbjct: 320  CVYIKFV-NGSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEIT 378

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            RD     ++LSQ++Y++KVL+ F M  + K +STP+A HFKLSA    STDE+  YM+ V
Sbjct: 379  RDINFGLLFLSQQSYIKKVLEHFNM-HDAKPISTPIAAHFKLSALQCASTDEDVGYMSRV 437

Query: 1173 PYASAV 1190
            PY+SAV
Sbjct: 438  PYSSAV 443



 Score = 62.0 bits (149), Expect(4) = 3e-84
 Identities = 43/125 (34%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
 Frame = +2

Query: 77  HPENEVNDHNERSVEEPELASTPEIRYPSESITTSRPKRNIQKPARYTY---MVAYALPI 247
           H +++  +     V +    S P ++   + I   R KR+   P R      MV YA   
Sbjct: 70  HVDDQETEIVSNDVNDTVQHSPPVLQPQDQPIAHRRTKRSCGAPIRLIEECDMVYYAFSC 129

Query: 248 TE--DDILY--NYKEALKSMESNKWKMTMDEKMRSLHQN*T*KLVPLSKGKKSIGCKWVF 415
            E  ++ L    Y EA+ S +   W   M E+M+SL +N T KLV L K KK + CKW+F
Sbjct: 130 VEQVENTLEPATYTEAVVSGDRENWISAMQEEMQSLEKNGTWKLVHLPKQKKPVHCKWIF 189

Query: 416 ARKEG 430
            RKEG
Sbjct: 190 KRKEG 194



 Score = 38.1 bits (87), Expect(4) = 3e-84
 Identities = 15/22 (68%), Positives = 20/22 (90%)
 Frame = +1

Query: 1189 LIYAMVCTRPDLSQVVSMVSRY 1254
            L+YAM+C+RPDLS  +S+VSRY
Sbjct: 446  LMYAMICSRPDLSHAMSLVSRY 467


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  141 bits (356), Expect(4) = 7e-84
 Identities = 67/128 (52%), Positives = 90/128 (70%)
 Frame = +1

Query: 451  QIDRYKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFH 630
            Q++RY+AR+V KGYAQKEGID+NE+FSPV++ +++R  L +   F+L L QLDVK AF H
Sbjct: 840  QVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFNLHLEQLDVKTAFLH 899

Query: 631  GTLDEEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFD 810
            G L+EEIYM QPEGF+   ++N  C+LN SLYGLK   R WYK+FD+F+    Y     D
Sbjct: 900  GDLEEEIYMLQPEGFEDKENQNLVCRLNKSLYGLKQAPRCWYKRFDSFIMCLGYNRLNAD 959

Query: 811  NVSTLRNF 834
              +  + F
Sbjct: 960  PCAYFKRF 967



 Score =  139 bits (350), Expect(4) = 7e-84
 Identities = 71/126 (56%), Positives = 91/126 (72%)
 Frame = +3

Query: 813  CVYLKKLQDGTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            C Y K+     F+ LLLYV+DML+   +K  ID LKA L+ EFEMKDLG A KILGM+I 
Sbjct: 961  CAYFKRFGKDNFVILLLYVDDMLVAGPNKDHIDELKAQLAREFEMKDLGPANKILGMQIH 1020

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            RDR  +++WLSQK YL+K+L +F M  + KS+STPL  + K+S+SMSPS +E R  M+ V
Sbjct: 1021 RDRGNRKIWLSQKNYLKKILSRFSM-QDCKSISTPLPINLKVSSSMSPSNEEGRMEMSRV 1079

Query: 1173 PYASAV 1190
            PYASAV
Sbjct: 1080 PYASAV 1085



 Score = 63.5 bits (153), Expect(4) = 7e-84
 Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 8/149 (5%)
 Frame = +2

Query: 29   EQGEFEINTDPE*IIIHPEN---EVNDHNERSVEEPELASTPEIRYPSESITTSRPKRNI 199
            ++GE + +T+ E     PE    +V +  E+   E E A        S + TT +  R  
Sbjct: 700  QRGEVDDSTEKE----KPETTQIQVEEEFEQDSSEAEPAHEEPEPESSGAPTTRQSDREK 755

Query: 200  QKPARYT-YM----VAYALPITEDDILYNYKEALKSMESNKWKMTMDEKMRSLHQN*T*K 364
            ++P  ++ Y+    VAY L +TED     ++EA+ S + ++W   M E++ +LH+N T  
Sbjct: 756  RRPTWHSDYVMEGNVAYCL-LTEDGEPSTFQEAINSSDVSQWTAAMQEEIEALHKNNTWD 814

Query: 365  LVPLSKGKKSIGCKWVFARKEGAPGKDSI 451
            LVPL +G+K IG KWVF  K    G D +
Sbjct: 815  LVPLPQGRKPIGNKWVFKIKRN--GDDQV 841



 Score = 37.4 bits (85), Expect(4) = 7e-84
 Identities = 14/22 (63%), Positives = 20/22 (90%)
 Frame = +1

Query: 1189 LIYAMVCTRPDLSQVVSMVSRY 1254
            L++AM+CTRPD++Q V +VSRY
Sbjct: 1088 LMFAMICTRPDIAQAVGVVSRY 1109


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  143 bits (360), Expect(4) = 3e-83
 Identities = 68/128 (53%), Positives = 90/128 (70%)
 Frame = +1

Query: 451  QIDRYKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFH 630
            Q++RY+AR+V KGYAQKEGID+NE+FSPV++ ++IR  L +   F+L L QLDVK AF H
Sbjct: 847  QVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRIVLAMCAAFELHLEQLDVKTAFLH 906

Query: 631  GTLDEEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFD 810
            G L+EEIYM QPEGF+    EN  C+L  SLYGLK   R WYK+FD+F+ +  Y     D
Sbjct: 907  GELEEEIYMLQPEGFEEKERENLVCRLTKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSD 966

Query: 811  NVSTLRNF 834
            + +  + F
Sbjct: 967  HCTYYKRF 974



 Score =  140 bits (353), Expect(4) = 3e-83
 Identities = 71/126 (56%), Positives = 92/126 (73%)
 Frame = +3

Query: 813  CVYLKKLQDGTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            C Y K+  DG FI LLLYV+DML+   +K  +  LKA L+ EF+MKDLG A KILGM+I 
Sbjct: 968  CTYYKRFDDGDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIH 1027

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            RDR  +++WLSQK YLQKVL++F M  +   +STPL  ++KLS+SM PS++ ER  M+ V
Sbjct: 1028 RDRKDRKIWLSQKNYLQKVLRRFNM-QDYNPISTPLPVNYKLSSSMIPSSEAERMEMSRV 1086

Query: 1173 PYASAV 1190
            PYASAV
Sbjct: 1087 PYASAV 1092



 Score = 59.7 bits (143), Expect(4) = 3e-83
 Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 8/158 (5%)
 Frame = +2

Query: 2    KENQNPNSYEQG---EFEINTDPE*IIIHPENEVNDHNERSVEEPELASTPEIRYPSESI 172
            KE +N  + ++    E E  +  E     PE+E  + NE +  EP               
Sbjct: 711  KEQKNDGTTKETATVEIEEKSGEENSEAEPEHEEQEPNEVNDAEPR-------------- 756

Query: 173  TTSRPKRNIQKPARYTYMV-----AYALPITEDDILYNYKEALKSMESNKWKMTMDEKMR 337
               R  R I+KP+ ++  V     AY L ++ED     + EA+   +++ W   M E++ 
Sbjct: 757  ---RTTRQIRKPSWHSEYVMASHDAYCL-LSEDGEPSTFHEAVNGSDASLWMAAMQEEIE 812

Query: 338  SLHQN*T*KLVPLSKGKKSIGCKWVFARKEGAPGKDSI 451
            +LH+N T +LV L KG+K+IG KWVF  K    G D +
Sbjct: 813  ALHRNNTWELVELPKGRKAIGNKWVFKIKR--DGNDQV 848



 Score = 36.6 bits (83), Expect(4) = 3e-83
 Identities = 14/22 (63%), Positives = 19/22 (86%)
 Frame = +1

Query: 1189 LIYAMVCTRPDLSQVVSMVSRY 1254
            L+YAM+CTRPD++Q V  VSR+
Sbjct: 1095 LMYAMICTRPDIAQAVGTVSRF 1116


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  146 bits (369), Expect(4) = 3e-83
 Identities = 70/128 (54%), Positives = 91/128 (71%)
 Frame = +1

Query: 451  QIDRYKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFH 630
            Q++RY+AR+V KGYAQKEGID+NE+FSPV++ ++IR  L +    DL L QLDVK AF H
Sbjct: 847  QVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLH 906

Query: 631  GTLDEEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFD 810
            G L+EEIYM QPEGFK  G EN  C+L  SLYGLK   R WYK+FD+F+ +  Y+    D
Sbjct: 907  GELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSD 966

Query: 811  NVSTLRNF 834
            + +  + F
Sbjct: 967  HCTYYKRF 974



 Score =  137 bits (346), Expect(4) = 3e-83
 Identities = 70/126 (55%), Positives = 90/126 (71%)
 Frame = +3

Query: 813  CVYLKKLQDGTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            C Y K+     FI LLLYV+DML+   +K  +  LKA L+ EF+MKDLG A KILGM+I 
Sbjct: 968  CTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIH 1027

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            RDR  +++WLSQK YL+KVL++F M  + K +STPL  +FKLS+ MSPS + ER  M+ V
Sbjct: 1028 RDRKDRKIWLSQKNYLRKVLRRFNM-QDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRV 1086

Query: 1173 PYASAV 1190
            PYASAV
Sbjct: 1087 PYASAV 1092



 Score = 57.8 bits (138), Expect(4) = 3e-83
 Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
 Frame = +2

Query: 182  RPKRNIQKPARYTYMV-----AYALPITEDDILYNYKEALKSMESNKWKMTMDEKMRSLH 346
            R  R  QKP+  +  V     AY L ITE+     + EAL   ++++W   M E+M +LH
Sbjct: 757  RSTRQTQKPSWQSDYVMTSHDAYCL-ITEEGEPSTFHEALNGSDASQWMTAMHEEMEALH 815

Query: 347  QN*T*KLVPLSKGKKSIGCKWVFARKEGAPGKDSI 451
            +N T +LV L KG+K+IG KWV+  K    G D +
Sbjct: 816  RNKTWELVELPKGRKAIGNKWVYKIKR--DGNDQV 848



 Score = 37.4 bits (85), Expect(4) = 3e-83
 Identities = 14/22 (63%), Positives = 20/22 (90%)
 Frame = +1

Query: 1189 LIYAMVCTRPDLSQVVSMVSRY 1254
            L+YAM+CTRPD++Q V +VSR+
Sbjct: 1095 LMYAMICTRPDIAQAVGVVSRF 1116


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  146 bits (368), Expect(4) = 3e-83
 Identities = 70/128 (54%), Positives = 90/128 (70%)
 Frame = +1

Query: 451  QIDRYKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFH 630
            Q++RY+AR+V KGYAQKEGID+NE+FSPV++ ++IR  L +    DL L QLDVK AF H
Sbjct: 847  QVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLH 906

Query: 631  GTLDEEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFD 810
            G L+EEIYM QPEGFK  G EN  C+L  SLYGLK   R WYK+FD+F+ +  Y     D
Sbjct: 907  GELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSD 966

Query: 811  NVSTLRNF 834
            + +  + F
Sbjct: 967  HCTYYKRF 974



 Score =  137 bits (346), Expect(4) = 3e-83
 Identities = 70/126 (55%), Positives = 90/126 (71%)
 Frame = +3

Query: 813  CVYLKKLQDGTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            C Y K+     FI LLLYV+DML+   +K  +  LKA L+ EF+MKDLG A KILGM+I 
Sbjct: 968  CTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIH 1027

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            RDR  +++WLSQK YL+KVL++F M  + K +STPL  +FKLS+ MSPS + ER  M+ V
Sbjct: 1028 RDRKDRKIWLSQKNYLRKVLRRFNM-QDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRV 1086

Query: 1173 PYASAV 1190
            PYASAV
Sbjct: 1087 PYASAV 1092



 Score = 58.2 bits (139), Expect(4) = 3e-83
 Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
 Frame = +2

Query: 98   DHNERSVEEPELASTPEIRYPSE-SITTSRPKRNIQKPARYTYMV-----AYALPITEDD 259
            +   +  +  E  S  E + P + +    R  R  QKP+  +  V     AY L ITE+ 
Sbjct: 728  EEKSKESDSSEAESVHEEQEPDDVNDGVRRSTRQTQKPSWQSDYVMTSHDAYCL-ITEEG 786

Query: 260  ILYNYKEALKSMESNKWKMTMDEKMRSLHQN*T*KLVPLSKGKKSIGCKWVFARKEGAPG 439
                + EAL   ++++W   M E+M +LH+N T +LV L KG+K+IG KWV+  K    G
Sbjct: 787  EPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKR--DG 844

Query: 440  KDSI 451
             D +
Sbjct: 845  NDQV 848



 Score = 37.4 bits (85), Expect(4) = 3e-83
 Identities = 14/22 (63%), Positives = 20/22 (90%)
 Frame = +1

Query: 1189 LIYAMVCTRPDLSQVVSMVSRY 1254
            L+YAM+CTRPD++Q V +VSR+
Sbjct: 1095 LMYAMICTRPDIAQAVGVVSRF 1116


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  149 bits (375), Expect(4) = 6e-83
 Identities = 72/125 (57%), Positives = 90/125 (72%)
 Frame = +1

Query: 460  RYKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFHGTL 639
            RYKAR+V KG+ QK+GID++E+FSPV+K +SIRT L L    DLE+ QLDVK AF HG L
Sbjct: 873  RYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDL 932

Query: 640  DEEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFDNVS 819
            +EEIYM QPEGF+V G ++  CKLN SLYGLK   R WY +FD+FMK+Q Y  +  D   
Sbjct: 933  EEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCV 992

Query: 820  TLRNF 834
              + F
Sbjct: 993  YFKRF 997



 Score =  134 bits (337), Expect(4) = 6e-83
 Identities = 69/126 (54%), Positives = 90/126 (71%)
 Frame = +3

Query: 813  CVYLKKLQDGTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            CVY K+  +  FI LLLYV+DMLI  K K  I +LK  LS  F+MKDLG A++ILGM+I 
Sbjct: 991  CVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIV 1050

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            R+R  +++WLSQ+ Y+++VL++F M  N K VSTPLA H KLS  M P+T EE+  M  V
Sbjct: 1051 RERTSRKLWLSQEKYIERVLERFNM-KNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKV 1109

Query: 1173 PYASAV 1190
            PY+SAV
Sbjct: 1110 PYSSAV 1115



 Score = 59.7 bits (143), Expect(4) = 6e-83
 Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
 Frame = +2

Query: 8    NQNPNSYEQGEFEINTDPE*IIIHPENEVNDHNERSVEEPELASTPEIRYPSESITTSRP 187
            + NP S E    E++   E        EV +  E+  E  E     E+ +P++     +P
Sbjct: 734  SNNPTSAESTTDEVSEQGE-----QPGEVIEQGEQLDEGVE-----EVEHPTQGEEQHQP 783

Query: 188  KRNIQKP---ARYTYMVAYALPITEDDILYNYKEALKSMESNKWKMTMDEKMRSLHQN*T 358
             R  ++P   +R      Y L I++D    + KE L   E N+    M E+M SL +N T
Sbjct: 784  LRRSERPRVESRRYPSTEYVL-ISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGT 842

Query: 359  *KLVPLSKGKKSIGCKWVFARKE 427
             KLV L KGK+ + CKWVF  K+
Sbjct: 843  YKLVELPKGKRPLKCKWVFKLKK 865



 Score = 35.8 bits (81), Expect(4) = 6e-83
 Identities = 14/22 (63%), Positives = 19/22 (86%)
 Frame = +1

Query: 1189 LIYAMVCTRPDLSQVVSMVSRY 1254
            L+YAMVCTRPD++  V +VSR+
Sbjct: 1118 LMYAMVCTRPDIAHAVGVVSRF 1139


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  146 bits (369), Expect(4) = 6e-83
 Identities = 70/128 (54%), Positives = 91/128 (71%)
 Frame = +1

Query: 451  QIDRYKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFH 630
            Q++RY+AR+V KGYAQKEGID+NE+FSPV++ ++IR  L +    DL L QLDVK AF H
Sbjct: 847  QVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLH 906

Query: 631  GTLDEEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFD 810
            G L+EEIYM QPEGFK  G EN  C+L  SLYGLK   R WYK+FD+F+ +  Y+    D
Sbjct: 907  GELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSD 966

Query: 811  NVSTLRNF 834
            + +  + F
Sbjct: 967  HCTYYKRF 974



 Score =  136 bits (343), Expect(4) = 6e-83
 Identities = 70/126 (55%), Positives = 89/126 (70%)
 Frame = +3

Query: 813  CVYLKKLQDGTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            C Y K+     FI LLLYV+DML+   +K  +  LKA L+ EF+MKDLG A KILGM+I 
Sbjct: 968  CTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIH 1027

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            RDR   ++WLSQK YL+KVL++F M  + K +STPL  +FKLS+ MSPS + ER  M+ V
Sbjct: 1028 RDRKDMKIWLSQKNYLRKVLRRFNM-QDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRV 1086

Query: 1173 PYASAV 1190
            PYASAV
Sbjct: 1087 PYASAV 1092



 Score = 58.2 bits (139), Expect(4) = 6e-83
 Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
 Frame = +2

Query: 98   DHNERSVEEPELASTPEIRYPSE-SITTSRPKRNIQKPARYTYMV-----AYALPITEDD 259
            +   +  +  E  S  E + P + +    R  R  QKP+  +  V     AY L ITE+ 
Sbjct: 728  EEKSKESDSSEAESVHEEQEPDDVNDGVRRSTRQTQKPSWQSDYVMTSHDAYCL-ITEEG 786

Query: 260  ILYNYKEALKSMESNKWKMTMDEKMRSLHQN*T*KLVPLSKGKKSIGCKWVFARKEGAPG 439
                + EAL   ++++W   M E+M +LH+N T +LV L KG+K+IG KWV+  K    G
Sbjct: 787  EPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKR--DG 844

Query: 440  KDSI 451
             D +
Sbjct: 845  NDQV 848



 Score = 37.4 bits (85), Expect(4) = 6e-83
 Identities = 14/22 (63%), Positives = 20/22 (90%)
 Frame = +1

Query: 1189 LIYAMVCTRPDLSQVVSMVSRY 1254
            L+YAM+CTRPD++Q V +VSR+
Sbjct: 1095 LMYAMICTRPDIAQAVGVVSRF 1116


>emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]
          Length = 595

 Score =  140 bits (352), Expect(4) = 8e-83
 Identities = 71/126 (56%), Positives = 98/126 (77%), Gaps = 1/126 (0%)
 Frame = +3

Query: 816  VYLKKLQD-GTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            VY+K L D  +FI+LLLYV+DMLI +KS VE+++LK+ LS EF+MK+L  AKKI+GMEI 
Sbjct: 343  VYVKSLDDDSSFIFLLLYVDDMLIAAKSMVEVNKLKSLLSKEFDMKELDAAKKIIGMEIH 402

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            RDR  +R+WLSQ +Y+++V ++F M  + K VSTPLA HF+LS +  P T++E + M+ V
Sbjct: 403  RDRASRRLWLSQYSYVKRVFERFNM-DDAKPVSTPLANHFRLSTNQCPKTBDEVKDMSKV 461

Query: 1173 PYASAV 1190
            PYASAV
Sbjct: 462  PYASAV 467



 Score =  134 bits (337), Expect(4) = 8e-83
 Identities = 61/118 (51%), Positives = 87/118 (73%)
 Frame = +1

Query: 457 DRYKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFHGT 636
           +++KAR+VAKGY+Q++G+DY+E+FSP+++H+SIRT L LV  FD++L Q+DV+  F HG 
Sbjct: 223 EKFKARLVAKGYSQRKGVDYDEIFSPMVRHTSIRTVLGLVAHFDMQLEQMDVETTFLHGD 282

Query: 637 LDEEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFD 810
           L+E +YM QPEGF   G E+  CKL  SLYGLK   R WYK FD+++    Y   ++D
Sbjct: 283 LEELVYMVQPEGFIQPGQEHLVCKLRKSLYGLKQSPRQWYKCFDSYIIRIGYKRCEYD 340



 Score = 70.9 bits (172), Expect(4) = 8e-83
 Identities = 36/95 (37%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
 Frame = +2

Query: 167 SITTSRPKRNIQKPARYTY--MVAYALPITEDDILYNYKEALKSMESNKWKMTMDEKMRS 340
           SI   +P+R I+ P RY +  +V+YAL  +  D +  ++EA+ + E ++W   M E+++ 
Sbjct: 128 SIAIDKPRRTIKPPTRYGFEDLVSYALITSSKDPI-TFQEAIHNQEKSRWMGAMVEEIQF 186

Query: 341 LHQN*T*KLVPLSKGKKSIGCKWVFARKEGAPGKD 445
           LH+N T  LV   +GK++IGCKWV+ +KE    K+
Sbjct: 187 LHKNQTWDLVEPPEGKRAIGCKWVYKKKEAISKKE 221



 Score = 33.1 bits (74), Expect(4) = 8e-83
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = +1

Query: 1192 IYAMVCTRPDLSQVVSMVSRY 1254
            +YAMVC RPDL+  VS+VS++
Sbjct: 471  MYAMVCIRPDLAHTVSVVSKF 491


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  143 bits (361), Expect(4) = 4e-82
 Identities = 65/118 (55%), Positives = 90/118 (76%)
 Frame = +1

Query: 460  RYKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFHGTL 639
            +YKAR+VA+G+ Q+EG+D+NE+FSPV+KHSSIR  L +V   DLEL Q+DVK AF HG L
Sbjct: 877  KYKARLVARGFTQREGVDFNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNL 936

Query: 640  DEEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFDN 813
            +E+I M QPEGF+    E++ C L+ SLYGLK   R WY++FD+FM ++ Y  S++D+
Sbjct: 937  EEQILMAQPEGFECKDKEDYVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDS 994



 Score =  120 bits (301), Expect(4) = 4e-82
 Identities = 69/126 (54%), Positives = 84/126 (66%)
 Frame = +3

Query: 813  CVYLKKLQDGTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            CVY      G   YLLLYV+DMLI SK K EI+RLK  L +EFEMKDLG AK+ILGM+I 
Sbjct: 995  CVYFGGSDQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAKRILGMDII 1054

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            RDR    ++LSQ  Y++KVL++F M  + K V TPL P FKLSA+   +T E+   M   
Sbjct: 1055 RDRSAGTLFLSQGKYIKKVLERFEM-QDCKPVQTPLGPQFKLSAA---TTSEDESQMNEF 1110

Query: 1173 PYASAV 1190
            PYA AV
Sbjct: 1111 PYAQAV 1116



 Score = 76.6 bits (187), Expect(4) = 4e-82
 Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
 Frame = +2

Query: 83   ENEVNDHNERSV---EEPELASTPEIRYPSESITTSRPKRNIQKPARYTY--MVAYALPI 247
            E E    +ER+    EE E++  P+    +  +   R +R ++ P RY Y  ++AYAL  
Sbjct: 746  EKEAASDDERATAESEEHEVSELPQADLQNYQLARDRVRREVRAPVRYGYADLIAYALLC 805

Query: 248  TEDDILY---NYKEALKSMESNKWKMTMDEKMRSLHQN*T*KLVPLSKGKKSIGCKWVFA 418
             ++  +    N+ EA++S+  +KW   M ++M SL +N T  L+P    K+ I CKW+F 
Sbjct: 806  ADEVTIEEPANFSEAMESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFK 865

Query: 419  RKEGAP 436
            R EG P
Sbjct: 866  RNEGIP 871



 Score = 35.4 bits (80), Expect(4) = 4e-82
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +1

Query: 1189 LIYAMVCTRPDLSQVVSMVSRY 1254
            L+YAMVCTR D++  VS+VSRY
Sbjct: 1119 LMYAMVCTRSDIAYAVSVVSRY 1140


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  146 bits (368), Expect(4) = 9e-81
 Identities = 70/128 (54%), Positives = 90/128 (70%)
 Frame = +1

Query: 451  QIDRYKARVVAKGYAQKEGIDYNEVFSPVIKHSSIRTRLVLVTQFDLELAQLDVKIAFFH 630
            Q++RY+AR+V KGYAQKEGID+NE+FSPV++ ++IR  L +    DL L QLDVK AF H
Sbjct: 847  QVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLH 906

Query: 631  GTLDEEIYMNQPEGFKVLGHENWTCKLNNSLYGLK*LSR*WYKQFDNFMKNQRYTHSQFD 810
            G L+EEIYM QPEGFK  G EN  C+L  SLYGLK   R WYK+FD+F+ +  Y     D
Sbjct: 907  GELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSD 966

Query: 811  NVSTLRNF 834
            + +  + F
Sbjct: 967  HCTYYKRF 974



 Score =  136 bits (342), Expect(4) = 9e-81
 Identities = 69/126 (54%), Positives = 90/126 (71%)
 Frame = +3

Query: 813  CVYLKKLQDGTFIYLLLYVNDMLITSKSKVEIDRLKA*LSSEFEMKDLGEAKKILGMEIR 992
            C Y K+     FI LLLYV+D+L+   +K  +  LKA L+ EF+MKDLG A KILGM+I 
Sbjct: 968  CTYYKRFDGNDFIILLLYVDDILVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIH 1027

Query: 993  RDRVKKRVWLSQKTYLQKVLQQFGMVGNTKSVSTPLAPHFKLSASMSPSTDEEREYMTHV 1172
            RDR  +++WLSQK YL+KVL++F M  + K +STPL  +FKLS+ MSPS + ER  M+ V
Sbjct: 1028 RDRKDRKIWLSQKNYLRKVLRRFNM-QDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRV 1086

Query: 1173 PYASAV 1190
            PYASAV
Sbjct: 1087 PYASAV 1092



 Score = 51.6 bits (122), Expect(4) = 9e-81
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
 Frame = +2

Query: 98   DHNERSVEEPELASTPEIRYPSE-SITTSRPKRNIQKPARYTYMV-----AYALPITEDD 259
            +   +  +  E  S  E + P + +    R  R  QKP+  +  V     AY L I E+ 
Sbjct: 728  EEKSKESDSSEAESVHEEQEPDDVNNGVRRSTRQTQKPSWQSDYVMTGHDAYCL-IAEEG 786

Query: 260  ILYNYKEALKSMESNKWKMTMDEKMRSLHQN*T*KLVPLSKGKKSIGCKWVFARKEGAPG 439
                + EAL   ++++W   + E+M +L +N T +LV L KG+K+IG KWV+  K    G
Sbjct: 787  EPSTFHEALNGSDASQWMTAIHEEMEALRKNKTWELVELPKGRKAIGNKWVYKIKR--DG 844

Query: 440  KDSI 451
             D +
Sbjct: 845  NDQV 848



 Score = 37.4 bits (85), Expect(4) = 9e-81
 Identities = 14/22 (63%), Positives = 20/22 (90%)
 Frame = +1

Query: 1189 LIYAMVCTRPDLSQVVSMVSRY 1254
            L+YAM+CTRPD++Q V +VSR+
Sbjct: 1095 LMYAMICTRPDIAQAVGVVSRF 1116