BLASTX nr result
ID: Paeonia22_contig00023791
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia22_contig00023791
(929 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007219137.1| hypothetical protein PRUPE_ppa015965mg [Prun... 243 6e-62
ref|XP_007226950.1| hypothetical protein PRUPE_ppa025194mg, part... 240 7e-61
ref|XP_007224256.1| hypothetical protein PRUPE_ppa018408mg, part... 240 7e-61
ref|XP_007203318.1| hypothetical protein PRUPE_ppa019964mg, part... 238 3e-60
ref|XP_007219089.1| hypothetical protein PRUPE_ppa015100mg, part... 235 2e-59
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 174 4e-41
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 173 1e-40
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc... 173 1e-40
gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat... 172 2e-40
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 172 2e-40
emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group] 171 3e-40
emb|CAD39843.2| OSJNBb0072N21.12 [Oryza sativa Japonica Group] 171 4e-40
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 171 5e-40
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 169 1e-39
emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group] 168 2e-39
emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group] 168 2e-39
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 167 4e-39
gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum] 166 9e-39
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni... 165 2e-38
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 164 6e-38
>ref|XP_007219137.1| hypothetical protein PRUPE_ppa015965mg [Prunus persica]
gi|462415599|gb|EMJ20336.1| hypothetical protein
PRUPE_ppa015965mg [Prunus persica]
Length = 1484
Score = 243 bits (621), Expect = 6e-62
Identities = 158/325 (48%), Positives = 200/325 (61%), Gaps = 17/325 (5%)
Frame = +1
Query: 4 WRMCVDCRALNMITVKNRH*ELKTCWISIKGPASLQSLTSNPYITK*------HQTRRHL 165
WRMCVD RALN IT+KNR+ + + L L Y TK HQ R H
Sbjct: 648 WRMCVDYRALNKITIKNRYPLPRIDDL-------LDQLHGAHYFTKLDLKSGYHQVRIHE 700
Query: 166 EDN----F*D*TRFV*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKT 333
ED F +VMPFGLCNAPATFMRLMNEVLRP+I+DFVIV+LD+ILIFS T
Sbjct: 701 EDTWKTAFKTKQGLFEWLVMPFGLCNAPATFMRLMNEVLRPFIDDFVIVYLDDILIFSVT 760
Query: 334 WEEHLGFEVVTGAQTTVECEDV*VCLGEFNLLGIHN*SRRVEGGSRKSQGHHRLAYTLYN 513
WE+HL AQ + V LG ++G +E SQ + T
Sbjct: 761 WEDHLHHI----AQKCEFGKQHLVYLGF--IVGAGELKMDLEKVHVISQWPTPRSVTEVR 814
Query: 514 NLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKLLKQK*S--PVL 687
+ G+ + + FSQIAAPLH L +ANQKFE + H ++F+LLK+K + PVL
Sbjct: 815 SF----IGACQYLRKFIRHFSQIAAPLHSLTKANQKFEWSRNHEESFQLLKRKITEAPVL 870
Query: 688 S--NL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYDKEIYALHQAMN 852
+ NL + F+VEADASNYA+G QDG+ +AY+S+MFSG VLNY TYDKE+YA+HQA+
Sbjct: 871 ALPNLQKPFDVEADASNYAMGAVLFQDGKPVAYHSKMFSGPVLNYPTYDKELYAMHQAVK 930
Query: 853 YWRVYLAGKEVIVHSNHRHLQYLTT 927
+WR YL GKEV+VHS+H+ LQ+LTT
Sbjct: 931 HWRAYLLGKEVVVHSDHKPLQFLTT 955
>ref|XP_007226950.1| hypothetical protein PRUPE_ppa025194mg, partial [Prunus persica]
gi|462423886|gb|EMJ28149.1| hypothetical protein
PRUPE_ppa025194mg, partial [Prunus persica]
Length = 1347
Score = 240 bits (612), Expect = 7e-61
Identities = 158/339 (46%), Positives = 203/339 (59%), Gaps = 31/339 (9%)
Frame = +1
Query: 4 WRMCVDCRALNMITVKNRH*ELKTCWISIKGPASLQSLTSNPYITK*------HQTRRHL 165
W MCVD RALN IT+KNR+ + + L L Y TK HQ R H
Sbjct: 562 WSMCVDYRALNKITIKNRYPLPRIDDL-------LDQLHGAHYFTKLDLKSGYHQVRIHE 614
Query: 166 EDN----F*D*TRFV*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKT 333
ED F +VMPFGLCNAPATFMRLMNEVLRP+I+DF+IV+LD+ILIFS T
Sbjct: 615 EDTWKTAFKTKQGLFEWLVMPFGLCNAPATFMRLMNEVLRPFIDDFIIVYLDDILIFSVT 674
Query: 334 WEEHLG-----FEVVTGAQTTV---ECEDV*VCLGEFNLL------GIHN*SRRVEGGSR 471
WE+HL EV+ Q + +CE G+ +L+ G +E
Sbjct: 675 WEDHLHHIAQVLEVLRTNQLQLNGKKCE-----FGKQHLVYPGFIVGARELKMDLEKVHV 729
Query: 472 KSQGHHRLAYTLYNNLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDT 651
SQ + T + G+ + + FSQIAAPLH L +ANQKFE + H ++
Sbjct: 730 ISQWPTPRSVTEVRSF----IGACQYLRKFIRHFSQIAAPLHSLTKANQKFEWSRNHEES 785
Query: 652 FKLLKQK*S--PVLS--NL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYS 810
F+LLK+K + PVL+ NL + F+VEADASNYA+G QDG+ +AY+S MFSG VLNY
Sbjct: 786 FQLLKRKITEAPVLALPNLQKPFDVEADASNYAMGAVLFQDGKPVAYHSEMFSGPVLNYP 845
Query: 811 TYDKEIYALHQAMNYWRVYLAGKEVIVHSNHRHLQYLTT 927
TYDKE+YA+HQA+ +WR YL GKEV+VHS+H+ LQ+LTT
Sbjct: 846 TYDKELYAMHQAVKHWRAYLLGKEVVVHSDHKPLQFLTT 884
>ref|XP_007224256.1| hypothetical protein PRUPE_ppa018408mg, partial [Prunus persica]
gi|462421192|gb|EMJ25455.1| hypothetical protein
PRUPE_ppa018408mg, partial [Prunus persica]
Length = 1440
Score = 240 bits (612), Expect = 7e-61
Identities = 159/336 (47%), Positives = 203/336 (60%), Gaps = 28/336 (8%)
Frame = +1
Query: 4 WRMCVDCRALNMITVKNRH*ELKTCWISIKGPASLQSLTSNPYITK*------HQTRRHL 165
WRMCVD RALN IT+KNR+ + + L L Y TK HQ R H
Sbjct: 635 WRMCVDYRALNKITIKNRYPLPRIDDL-------LDQLHGAHYFTKLDLKSGYHQVRIHE 687
Query: 166 EDN----F*D*TRFV*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKT 333
ED F +VMPFGLCNAPATFM+LMNEVLRP+I+DFVIV+LD+ILIFS T
Sbjct: 688 EDTWKTAFKTKQGLFEWLVMPFGLCNAPATFMQLMNEVLRPFIDDFVIVYLDDILIFSVT 747
Query: 334 WEEHLG-----FEVVTGAQTTV---ECE---DV*VCLGEFNLLGIHN*SRRVEGGSRKSQ 480
WE+HL EV+ Q + +CE V LG ++G +E SQ
Sbjct: 748 WEDHLHHIAQVLEVLRTNQLQLNGKKCEFGKQHLVYLGF--IVGAEELKMDLEKVHVISQ 805
Query: 481 GHHRLAYTLYNNLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKL 660
+ T + G+ + + FSQIAAPLH L +ANQKFE + H ++F+L
Sbjct: 806 WPTPRSVTEVRSF----IGACQYLRKFIRHFSQIAAPLHSLTKANQKFEWSRNHEESFQL 861
Query: 661 LKQK*S--PVLS--NL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYD 819
LK+K + PVL+ NL + F+VEADASNYA+G QDG+ +AY+S MFSG VLNY TYD
Sbjct: 862 LKRKITEAPVLALPNLQKPFDVEADASNYAMGAVLFQDGKPVAYHSEMFSGPVLNYPTYD 921
Query: 820 KEIYALHQAMNYWRVYLAGKEVIVHSNHRHLQYLTT 927
KE+YA+HQ + +WR YL GKEV+VHS+H+ LQ+LTT
Sbjct: 922 KELYAMHQVVKHWRAYLLGKEVVVHSDHKPLQFLTT 957
>ref|XP_007203318.1| hypothetical protein PRUPE_ppa019964mg, partial [Prunus persica]
gi|462398849|gb|EMJ04517.1| hypothetical protein
PRUPE_ppa019964mg, partial [Prunus persica]
Length = 1488
Score = 238 bits (606), Expect = 3e-60
Identities = 157/336 (46%), Positives = 204/336 (60%), Gaps = 28/336 (8%)
Frame = +1
Query: 4 WRMCVDCRALNMITVKNRH*ELKTCWISIKGPASLQSLTSNPYITK*------HQTRRHL 165
W MCVD RALN IT+KNR+ + + L L Y TK HQ R H
Sbjct: 635 WHMCVDYRALNKITIKNRYPLPRIDDL-------LDQLHGAHYFTKLDLKSGYHQVRIHE 687
Query: 166 EDNF*D*TRF----V*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKT 333
ED + + +VMPFGLCNAPATFMRLMNEVLRP+I+DFVIV+LD+ILIFS T
Sbjct: 688 EDTWKTAFKIKQGLFEWLVMPFGLCNAPATFMRLMNEVLRPFIDDFVIVYLDDILIFSVT 747
Query: 334 WEEHLG-----FEVVTGAQTTV---ECE---DV*VCLGEFNLLGIHN*SRRVEGGSRKSQ 480
WE+HL EV+ Q + +CE V LG ++G +E SQ
Sbjct: 748 WEDHLHHIAQVLEVLRTNQLQLNGKKCEFGKQHLVYLGF--IVGAGELKMDLEKVHVISQ 805
Query: 481 GHHRLAYTLYNNLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKL 660
+ T + G+ + + FSQIAAPLH L +ANQKFE + H ++F+L
Sbjct: 806 WPTPRSVTEVRSF----IGACQYLRKFIRHFSQIAAPLHSLTKANQKFEWSRNHEESFQL 861
Query: 661 LKQK*S--PVLS--NL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYD 819
LK+K + PVL+ NL + F++EADASNYA+G Q+G+ +AY+S MFSG VLNY TYD
Sbjct: 862 LKRKITEAPVLALPNLQKPFDIEADASNYAMGAVLFQEGKPVAYHSEMFSGPVLNYPTYD 921
Query: 820 KEIYALHQAMNYWRVYLAGKEVIVHSNHRHLQYLTT 927
KE+YA+HQA+ +WR YL GKEV+VHS+H+ LQ+LTT
Sbjct: 922 KELYAMHQAVKHWRAYLLGKEVVVHSDHKPLQFLTT 957
>ref|XP_007219089.1| hypothetical protein PRUPE_ppa015100mg, partial [Prunus persica]
gi|462415551|gb|EMJ20288.1| hypothetical protein
PRUPE_ppa015100mg, partial [Prunus persica]
Length = 641
Score = 235 bits (599), Expect = 2e-59
Identities = 159/336 (47%), Positives = 202/336 (60%), Gaps = 28/336 (8%)
Frame = +1
Query: 4 WRMCVDCRALNMITVKNRH*ELKTCWISIKGPASLQSLTSNPYITK*------HQTRRHL 165
WRM VD RALN IT+KNR+ + + L L Y TK HQ R H
Sbjct: 209 WRMYVDYRALNKITIKNRYPLPRIDDL-------LDQLHGAHYFTKLDLKSGYHQVRIHE 261
Query: 166 EDN----F*D*TRFV*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKT 333
ED F +VMPFGLCNAPATFMRLMNEVLRP+I+DFVIV+LD+ILIFS T
Sbjct: 262 EDTWKTAFKTKQGLFEWLVMPFGLCNAPATFMRLMNEVLRPFIDDFVIVYLDDILIFSVT 321
Query: 334 WEEHLG-----FEVVTGAQTTV---ECE---DV*VCLGEFNLLGIHN*SRRVEGGSRKSQ 480
WE+HL EV+ Q + +CE V LG ++G +E SQ
Sbjct: 322 WEDHLHHIAQVLEVLRTNQLQLNGKKCEFGKQHLVYLGF--IVGAGELKMNLEKVHVISQ 379
Query: 481 GHHRLAYTLYNNLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKL 660
+ T + G+ + + FSQIAAPLH L +ANQKFE + H ++F+L
Sbjct: 380 WPTPRSVTEVRSF----IGACQYLRKFIRHFSQIAAPLHSLTKANQKFEWSRNHEESFQL 435
Query: 661 LKQK*S--PVLS--NL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYD 819
LK+K + PVL+ NL + F+VEADASNYA+G QDG+ +AY+S MFSG VLNY TYD
Sbjct: 436 LKRKITEAPVLALPNLQKPFDVEADASNYAMGAVLFQDGKPVAYHSEMFSGPVLNYPTYD 495
Query: 820 KEIYALHQAMNYWRVYLAGKEVIVHSNHRHLQYLTT 927
KE+YA+HQA+ +WR YL GKEV+VHS+ + LQ+LTT
Sbjct: 496 KELYAMHQAVKHWRAYLLGKEVVVHSDPKPLQFLTT 531
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 174 bits (441), Expect = 4e-41
Identities = 121/326 (37%), Positives = 171/326 (52%), Gaps = 19/326 (5%)
Frame = +1
Query: 1 TWRMCVDCRALNMITVKNRH*--ELKTCWISIKGPASLQSLTSNPYITK*HQTRRHLEDN 174
+WRMCVDCRA+N IT++ RH L + G + HQ R L D
Sbjct: 795 SWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGY---HQIRMKLGDE 851
Query: 175 F*D*--TRF--V*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKTWEE 342
+ T+F +VMPFGL NAP+TFMRLMNEVLR +I FV+V+ D+ILI+S++ E+
Sbjct: 852 WKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIED 911
Query: 343 HLG-----FEVVTGAQTTVECEDV*VCLGEFNLLGIHN*SRRVEGGSRKSQGHHRLAY-T 504
H G F+ + A+ E C + LG + +E K + H T
Sbjct: 912 HHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPT 971
Query: 505 LYNNLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKLLKQK*SPV 684
+ S L G + K FS IAAPLH+L + N F + + F LK K +
Sbjct: 972 TITQVRSFL-GLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHA 1030
Query: 685 ----LSNL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYDKEIYALHQ 843
L + + FE+E DAS LG LQ+G+ +AY+S SG LNYSTYDKE++AL +
Sbjct: 1031 PLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVR 1090
Query: 844 AMNYWRVYLAGKEVIVHSNHRHLQYL 921
+ W+ YL KE ++HS+H L+++
Sbjct: 1091 TLETWQHYLWPKEFVIHSDHESLKHI 1116
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 173 bits (438), Expect = 1e-40
Identities = 119/325 (36%), Positives = 166/325 (51%), Gaps = 18/325 (5%)
Frame = +1
Query: 1 TWRMCVDCRALNMITVKNRH*--ELKTCWISIKGPASLQSLTSNPYITK*HQTRRHLEDN 174
TWRMCVDCRA+N IT++ RH L + G + HQ R L D
Sbjct: 770 TWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGAIVFSKVDLRSGY---HQIRMKLGDE 826
Query: 175 F*D*--TRF--V*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKTWEE 342
+ T+F +VMPFGL NAP+TFMRLMNEVLR +I FV+V+ D+ILI+SK+ +E
Sbjct: 827 WKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGKFVVVYFDDILIYSKSMDE 886
Query: 343 HLG-----FEVVTGAQTTVECEDV*VCLGEFNLLGIHN*SRRVEGGSRKSQGHHRLAYTL 507
H+ F + A+ E C + LG + +E K + H
Sbjct: 887 HVDHMRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHGWPMPK 946
Query: 508 YNNLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKLLKQK*SPV- 684
G + K FS IAAPL++L + F F +LK K +
Sbjct: 947 TITQVRSFLGLAGFYRRFVKDFSTIAAPLNELTKKGVHFSWGKVQEHAFNVLKDKLTHAP 1006
Query: 685 ---LSNL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYDKEIYALHQA 846
L + + FE+E DAS LG LQ+G+ +AY+S SG+VLNYSTYDKE+YAL +
Sbjct: 1007 LLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGSVLNYSTYDKELYALVRT 1066
Query: 847 MNYWRVYLAGKEVIVHSNHRHLQYL 921
+ W+ YL KE ++HS+H L+++
Sbjct: 1067 LETWQHYLWPKEFVIHSDHESLKHI 1091
>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 889
Score = 173 bits (438), Expect = 1e-40
Identities = 121/326 (37%), Positives = 171/326 (52%), Gaps = 19/326 (5%)
Frame = +1
Query: 1 TWRMCVDCRALNMITVKNRH*--ELKTCWISIKGPASLQSLTSNPYITK*HQTRRHLEDN 174
+WRMCVDCRA+N IT++ RH L + G + HQ R L D
Sbjct: 108 SWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFCKIDLRSGY---HQIRMKLGDE 164
Query: 175 F*D*--TRF--V*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKTWEE 342
+ T+F +VMPFGL NAP+TFMRLMNEVLR +I FV+V+ D+ILI+S++ E+
Sbjct: 165 WKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIED 224
Query: 343 HLG-----FEVVTGAQTTVECEDV*VCLGEFNLLGIHN*SRRVEGGSRKSQGHHRLAY-T 504
H G F+ + A+ E C + LG + +E K + H T
Sbjct: 225 HHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPT 284
Query: 505 LYNNLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKLLKQK*SPV 684
+ S L G + K FS IAAPLH+L + N F + + F LK K +
Sbjct: 285 TITQVRSFL-GLAGFYRHFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHA 343
Query: 685 ----LSNL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYDKEIYALHQ 843
L + + FE+E DAS LG LQ+G+ +AY+S SG LNYSTYDKE++AL +
Sbjct: 344 PLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVR 403
Query: 844 AMNYWRVYLAGKEVIVHSNHRHLQYL 921
+ W+ YL KE ++HS+H L+++
Sbjct: 404 TLETWQHYLWPKEFVIHSDHESLKHI 429
>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
Length = 1358
Score = 172 bits (435), Expect = 2e-40
Identities = 122/325 (37%), Positives = 162/325 (49%), Gaps = 18/325 (5%)
Frame = +1
Query: 1 TWRMCVDCRALNMITVKNRH*--ELKTCWISIKGPASLQSLTSNPYITK*HQTRRHLEDN 174
TWRMCVDCRA+N ITVK R+ L + G + HQ R D
Sbjct: 710 TWRMCVDCRAINNITVKYRYPIPRLDDMLDELHGAKIFSKIDLRRGY---HQIRMQKGDE 766
Query: 175 ----F*D*TRFV*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKTWEE 342
F +VMPFGL NAP+TFMRLMN VLR +I FV+V+ D+ILI+SK ++
Sbjct: 767 WKTAFKTKNGLYEWLVMPFGLTNAPSTFMRLMNHVLRNFIGKFVVVYFDDILIYSKDPQK 826
Query: 343 HL-----GFEVVTGAQTTVECEDV*VCLGEFNLLGIHN*SRRVEGGSRKSQGHHRLAYTL 507
H+ F V+ Q E + LG S+ +E K Q
Sbjct: 827 HIIHLKEVFLVLRREQLYANLEKCYFGVESVVFLGFIVSSKGIEVDETKIQAIRDWPTPK 886
Query: 508 YNNLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKLLKQK*SPV- 684
HG S + K FS IAAPL++L++ + KFE K F+ LK+K
Sbjct: 887 TATKVRSFHGLASFYRRFVKDFSTIAAPLNELVKKDVKFEWGPKQEQAFQTLKEKLCSAQ 946
Query: 685 ---LSNL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYDKEIYALHQA 846
L N + FE+E DAS +G +Q+G IAY+S SG LNYSTYDKE+YAL +
Sbjct: 947 VLSLPNFDKTFEIECDASGIGIGAVLMQEGHPIAYFSEKLSGPALNYSTYDKELYALVRT 1006
Query: 847 MNYWRVYLAGKEVIVHSNHRHLQYL 921
+ W YL KE ++HS+H L++L
Sbjct: 1007 LETWEHYLWFKEFVIHSDHEALKHL 1031
>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 172 bits (435), Expect = 2e-40
Identities = 120/326 (36%), Positives = 172/326 (52%), Gaps = 19/326 (5%)
Frame = +1
Query: 1 TWRMCVDCRALNMITVKNRH*--ELKTCWISIKGPASLQSLTSNPYITK*HQTRRHLEDN 174
+WRMCVDCRA+N IT++ RH L + G + + HQ R L D
Sbjct: 691 SWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKID---LCSGYHQIRMKLGDE 747
Query: 175 F*D*--TRF--V*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKTWEE 342
+ T+F +VMPFGL NAP+TFMRLMNEVLR +I FV+V+ D+ILI+S++ E+
Sbjct: 748 WKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIED 807
Query: 343 HLG-----FEVVTGAQTTVECEDV*VCLGEFNLLGIHN*SRRVEGGSRKSQGHHRLAY-T 504
H G F+ + A+ E C + LG + +E K + H T
Sbjct: 808 HHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPT 867
Query: 505 LYNNLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKLLKQK*SPV 684
+ S L G + K FS IAAPLH+L + N F + + F LK K +
Sbjct: 868 TITQVRSFL-GLAGFYRLFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHA 926
Query: 685 ----LSNL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYDKEIYALHQ 843
L + + FE+E DAS LG LQ+G+ +AY+S SG LNYSTYDK+++AL +
Sbjct: 927 PLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKQLFALVR 986
Query: 844 AMNYWRVYLAGKEVIVHSNHRHLQYL 921
+ W+ YL KE ++HS+H L+++
Sbjct: 987 TLETWQHYLWPKEFVIHSDHESLKHI 1012
>emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]
Length = 1170
Score = 171 bits (434), Expect = 3e-40
Identities = 120/326 (36%), Positives = 170/326 (52%), Gaps = 19/326 (5%)
Frame = +1
Query: 1 TWRMCVDCRALNMITVKNRH*--ELKTCWISIKGPASLQSLTSNPYITK*HQTRRHLEDN 174
+WRMCVDCRA+N IT++ RH L + G + HQ R L D
Sbjct: 428 SWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFYKIDLRSGY---HQIRMKLGDE 484
Query: 175 F*D*--TRF--V*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKTWEE 342
+ T+F +VMPFGL NAP+TFMRLMNEVLR +I FV+V+ D+ILI+S++ E+
Sbjct: 485 WKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIED 544
Query: 343 HLG-----FEVVTGAQTTVECEDV*VCLGEFNLLGIHN*SRRVEGGSRKSQGHHRLAY-T 504
H G F+ + A+ E C + LG + +E K + H T
Sbjct: 545 HHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPT 604
Query: 505 LYNNLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKLLKQK*SPV 684
+ S L G + K FS IAAPLH+L + N F + + F LK K +
Sbjct: 605 TITQVRSFL-GLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHA 663
Query: 685 ----LSNL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYDKEIYALHQ 843
L + + E+E DAS LG LQ+G+ +AY+S SG LNYSTYDKE++AL +
Sbjct: 664 PLLQLPDFNKTLELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVR 723
Query: 844 AMNYWRVYLAGKEVIVHSNHRHLQYL 921
+ W+ YL KE ++HS+H L+++
Sbjct: 724 TLETWQHYLWPKEFVIHSDHESLKHI 749
>emb|CAD39843.2| OSJNBb0072N21.12 [Oryza sativa Japonica Group]
Length = 1239
Score = 171 bits (433), Expect = 4e-40
Identities = 120/326 (36%), Positives = 169/326 (51%), Gaps = 19/326 (5%)
Frame = +1
Query: 1 TWRMCVDCRALNMITVKNRH*--ELKTCWISIKGPASLQSLTSNPYITK*HQTRRHLEDN 174
+WRMCVDCRA+N IT++ RH L + G + HQ R L D
Sbjct: 573 SWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGY---HQIRMKLGDE 629
Query: 175 F*D*--TRF--V*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKTWEE 342
+ T+F +VMPFGL NAP+TFMRLMNEVLR +I FV+V+ D ILI+S++ E+
Sbjct: 630 WKTAFKTKFSLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDGILIYSRSIED 689
Query: 343 HLG-----FEVVTGAQTTVECEDV*VCLGEFNLLGIHN*SRRVEGGSRKSQGHHRLAY-T 504
H G F+ + A+ E C + LG + +E K + H T
Sbjct: 690 HHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPT 749
Query: 505 LYNNLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKLLKQK*SPV 684
+ S L G + K FS IAAPLH+L + N F + + F LK K +
Sbjct: 750 TITQVRSFL-GLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHA 808
Query: 685 ----LSNL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYDKEIYALHQ 843
L + + FE+E DAS LG LQ+ + +AY+S SG LNYSTYDKE++AL +
Sbjct: 809 PLLQLPDFNKTFELECDASGIGLGGVLLQEDKPVAYFSEKLSGPSLNYSTYDKELFALVR 868
Query: 844 AMNYWRVYLAGKEVIVHSNHRHLQYL 921
+ W+ YL KE ++HS+H L+++
Sbjct: 869 TLETWQHYLWPKEFVIHSDHESLKHI 894
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 171 bits (432), Expect = 5e-40
Identities = 120/326 (36%), Positives = 169/326 (51%), Gaps = 19/326 (5%)
Frame = +1
Query: 1 TWRMCVDCRALNMITVKNRH*--ELKTCWISIKGPASLQSLTSNPYITK*HQTRRHLEDN 174
+WRMCVDCRA+N IT++ RH L + G + HQ R L D
Sbjct: 795 SWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGY---HQIRMKLGDE 851
Query: 175 F*D*--TRF--V*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKTWEE 342
+ T+F +VMPFGL NAP+TFMRLMNEVLR +I FV+V+ D+ILI+S++ E+
Sbjct: 852 WKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIED 911
Query: 343 HLG-----FEVVTGAQTTVECEDV*VCLGEFNLLGIHN*SRRVEGGSRKSQGHHRLAY-T 504
H G F+ + A+ E C + L + +E K + H T
Sbjct: 912 HHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLSYVVTPQGIEVDQAKVEAIHNWPVPT 971
Query: 505 LYNNLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKLLKQK*SPV 684
+ S L G + K FS IAAPLH+L + N F + + F LK K +
Sbjct: 972 TITQVRSFL-GLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHA 1030
Query: 685 ----LSNL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYDKEIYALHQ 843
L + + FE E DAS LG LQ+G+ +AY+S SG LNYSTYDKE++AL +
Sbjct: 1031 PLLQLPDFNKTFEHECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVR 1090
Query: 844 AMNYWRVYLAGKEVIVHSNHRHLQYL 921
+ W+ YL KE ++HS+H L+++
Sbjct: 1091 TLETWQHYLWPKEFVIHSDHESLKHI 1116
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 169 bits (428), Expect = 1e-39
Identities = 119/326 (36%), Positives = 169/326 (51%), Gaps = 19/326 (5%)
Frame = +1
Query: 1 TWRMCVDCRALNMITVKNRH*--ELKTCWISIKGPASLQSLTSNPYITK*HQTRRHLEDN 174
+WRMCVDCRA+N IT++ RH L + G + HQ R L D
Sbjct: 795 SWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGY---HQIRMKLGDE 851
Query: 175 F*D*--TRF--V*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKTWEE 342
+ T+F +VMPFGL NAP+TF+RLMNEVLR +I FV+V+ D+ILI+S++ E+
Sbjct: 852 WKTAFKTKFGLYEWLVMPFGLTNAPSTFIRLMNEVLRAFIGRFVVVYFDDILIYSRSIED 911
Query: 343 HLG-----FEVVTGAQTTVECEDV*VCLGEFNLLGIHN*SRRVEGGSRKSQGHHRLAY-T 504
H G F+ + + E C + LG + +E K + H T
Sbjct: 912 HHGHLRAVFDALRDERLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPT 971
Query: 505 LYNNLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKLLKQK*SPV 684
+ S L G + K FS IAAPLH+L + N F + + F LK K +
Sbjct: 972 TITQVRSFL-GLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHA 1030
Query: 685 ----LSNL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYDKEIYALHQ 843
L + + FE+E DAS LG LQ+G+ I Y+S SG LNYSTYDKE++AL +
Sbjct: 1031 PLLQLPDFNKTFELECDASGIGLGGVLLQEGKPIEYFSEKLSGPSLNYSTYDKELFALVR 1090
Query: 844 AMNYWRVYLAGKEVIVHSNHRHLQYL 921
+ W+ YL KE ++HS+H L+++
Sbjct: 1091 TLETWQHYLWPKEFVIHSDHESLKHI 1116
>emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]
Length = 1667
Score = 168 bits (426), Expect = 2e-39
Identities = 117/325 (36%), Positives = 165/325 (50%), Gaps = 18/325 (5%)
Frame = +1
Query: 1 TWRMCVDCRALNMITVKNRH*--ELKTCWISIKGPASLQSLTSNPYITK*HQTRRHLEDN 174
+WRMCVDCRA+N IT++ RH L + G + HQ R +L D
Sbjct: 690 SWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGY---HQIRMNLGDE 746
Query: 175 F*D*--TRF--V*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKTWEE 342
+ T+F +VMPFGL NAP TFMRLMNEVLRP+I FV+V+ D+ILI+SK+ E
Sbjct: 747 WKTAFKTKFGLYEWLVMPFGLTNAPTTFMRLMNEVLRPFIGKFVVVYFDDILIYSKSMGE 806
Query: 343 HLG-----FEVVTGAQTTVECEDV*VCLGEFNLLGIHN*SRRVEGGSRKSQGHHRLAYTL 507
H F + A+ E C + LG + +E K +
Sbjct: 807 HFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPK 866
Query: 508 YNNLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKLLKQK*SPV- 684
+ G + + FS IAAPL+ L + F + + F +LK K +
Sbjct: 867 TVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTWGTSQENAFHMLKDKLTHAP 926
Query: 685 ---LSNL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYDKEIYALHQA 846
L + + FE+E DAS LG LQ+G+ +AY+S SG VLNYSTYDKE+YAL +
Sbjct: 927 LLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRT 986
Query: 847 MNYWRVYLAGKEVIVHSNHRHLQYL 921
+ W+ YL KE ++HS+H L+++
Sbjct: 987 LETWQHYLWPKEFVIHSDHESLKHI 1011
>emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group]
Length = 1667
Score = 168 bits (426), Expect = 2e-39
Identities = 117/325 (36%), Positives = 165/325 (50%), Gaps = 18/325 (5%)
Frame = +1
Query: 1 TWRMCVDCRALNMITVKNRH*--ELKTCWISIKGPASLQSLTSNPYITK*HQTRRHLEDN 174
+WRMCVDCRA+N IT++ RH L + G + HQ R +L D
Sbjct: 690 SWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGY---HQIRMNLGDE 746
Query: 175 F*D*--TRF--V*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKTWEE 342
+ T+F +VMPFGL NAP TFMRLMNEVLRP+I FV+V+ D+ILI+SK+ E
Sbjct: 747 WKTAFKTKFGLYEWLVMPFGLTNAPTTFMRLMNEVLRPFIGKFVVVYFDDILIYSKSMGE 806
Query: 343 HLG-----FEVVTGAQTTVECEDV*VCLGEFNLLGIHN*SRRVEGGSRKSQGHHRLAYTL 507
H F + A+ E C + LG + +E K +
Sbjct: 807 HFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPK 866
Query: 508 YNNLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKLLKQK*SPV- 684
+ G + + FS IAAPL+ L + F + + F +LK K +
Sbjct: 867 TVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTWGTSQENAFHMLKDKLTHAP 926
Query: 685 ---LSNL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYDKEIYALHQA 846
L + + FE+E DAS LG LQ+G+ +AY+S SG VLNYSTYDKE+YAL +
Sbjct: 927 LLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRT 986
Query: 847 MNYWRVYLAGKEVIVHSNHRHLQYL 921
+ W+ YL KE ++HS+H L+++
Sbjct: 987 LETWQHYLWPKEFVIHSDHESLKHI 1011
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 167 bits (424), Expect = 4e-39
Identities = 117/325 (36%), Positives = 165/325 (50%), Gaps = 18/325 (5%)
Frame = +1
Query: 1 TWRMCVDCRALNMITVKNRH*--ELKTCWISIKGPASLQSLTSNPYITK*HQTRRHLEDN 174
+WRMCVDCRA+N IT++ RH L + G + HQ R L D
Sbjct: 767 SWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGY---HQIRMKLGDE 823
Query: 175 F*D*--TRF--V*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKTWEE 342
+ T+F +VMPFGL NAP+TFMRLMNEVLRP+I FV+V+ D+ILI+SK+ E
Sbjct: 824 WKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDILIYSKSMGE 883
Query: 343 HLG-----FEVVTGAQTTVECEDV*VCLGEFNLLGIHN*SRRVEGGSRKSQGHHRLAYTL 507
H F + A+ E C + LG + +E K +
Sbjct: 884 HFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPK 943
Query: 508 YNNLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKLLKQK*SPV- 684
+ G + + FS IAAPL+ L + F + + F +LK K +
Sbjct: 944 TVSQVRSFLGLAGFYRRFVQDFSTIAAPLNVLTKKGVPFTWGTSQENAFHMLKDKLTHAP 1003
Query: 685 ---LSNL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYDKEIYALHQA 846
L + + FE+E DAS LG LQ+G+ +AY+S SG VLNYSTYDKE+YAL +
Sbjct: 1004 LLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRT 1063
Query: 847 MNYWRVYLAGKEVIVHSNHRHLQYL 921
+ W+ YL KE ++HS+H L+++
Sbjct: 1064 LETWQHYLWPKEFVIHSDHESLKHI 1088
Score = 102 bits (254), Expect = 2e-19
Identities = 85/255 (33%), Positives = 132/255 (51%), Gaps = 15/255 (5%)
Frame = +1
Query: 208 VMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKTWEEHLG-FEVVTGA---- 372
VM FGL NAPA FM LMN+V Y++ FV+V +D+IL++S++ E+H +V G
Sbjct: 1631 VMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLVLGKLREH 1690
Query: 373 QTTVECEDV*VCLGEFNLLGIHN*SRR---VEGGSRKSQGHHRLAYTLYNNLGS*LHGSM 543
Q + L E LG H S + V+ + + + T+ + S L G
Sbjct: 1691 QLYAKLSKCEFWLSEVKFLG-HVISAKGVAVDPETVTAVTDWKQPKTV-TQIRSFL-GLA 1747
Query: 544 SVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKLLKQK*--SPVL--SNL*RNFE 711
+ + FS+IA P+ LL+ +KF + + F+ LK+K SPVL + ++F
Sbjct: 1748 GYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFM 1807
Query: 712 VEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYDKEIYALHQAMNYWRVYLAGKE 882
V DAS LG +Q+G +AY SR NY T+D E+ A+ A+ WR YL G
Sbjct: 1808 VYCDASPQGLGCVLMQEGHVVAYASRQLWPHEGNYPTHDLELAAVVHALKIWRHYLIGNR 1867
Query: 883 VIVHSNHRHLQYLTT 927
++++H+ L+Y+ T
Sbjct: 1868 CEIYTDHKSLKYIFT 1882
>gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
Length = 1004
Score = 166 bits (421), Expect = 9e-39
Identities = 116/325 (35%), Positives = 167/325 (51%), Gaps = 18/325 (5%)
Frame = +1
Query: 1 TWRMCVDCRALNMITVKNRH*--ELKTCWISIKGPASLQSLTSNPYITK*HQTRRHLEDN 174
+WRMC DCRA++ IT+K RH L + G + HQ R D
Sbjct: 657 SWRMCTDCRAISNITIKYRHPIPRLDDLLDELFGACLFSKIDLKSGY---HQIRIREGDE 713
Query: 175 F*D*--TRF--V*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKTWEE 342
+ T+F +VMPFGL NAP+TFMRLMN VLR ++ FV+V+ D+ILI+SK ++
Sbjct: 714 WKTAFKTKFGLYEWMVMPFGLTNAPSTFMRLMNHVLREFLGKFVVVYFDDILIYSKNLDD 773
Query: 343 HL-----GFEVVTGAQTTVECEDV*VCLGEFNLLGIHN*SRRVEGGSRKSQGHHRLAYTL 507
H +V+ E C LG S+ V K +
Sbjct: 774 HCIHLKAVLQVLRYENLYANLEKCVFCTDHVIFLGFIVSSKGVHVDEEKVKAIREWPPPK 833
Query: 508 YNNLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKLLKQK*S--P 681
+ HG S + K FS +AAPL++++ + F+ K F LK+K + P
Sbjct: 834 NVSEVRSFHGLASFYRRFVKDFSTLAAPLNEIVEKDVGFKWGEKQEQAFAALKEKLTQAP 893
Query: 682 VLS--NL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYDKEIYALHQA 846
VL+ N ++FE+E DASN +G LQ+G +AY+S GA LNYSTYDKE+Y+L +A
Sbjct: 894 VLALPNFSKSFEIECDASNVGIGAVLLQEGHPLAYFSEKLKGAALNYSTYDKELYSLVRA 953
Query: 847 MNYWRVYLAGKEVIVHSNHRHLQYL 921
+ W+ YL KE ++HS+H L++L
Sbjct: 954 LQTWQHYLLPKEFVIHSDHESLKHL 978
>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 165 bits (418), Expect = 2e-38
Identities = 116/325 (35%), Positives = 164/325 (50%), Gaps = 18/325 (5%)
Frame = +1
Query: 1 TWRMCVDCRALNMITVKNRH*--ELKTCWISIKGPASLQSLTSNPYITK*HQTRRHLEDN 174
+WRMCVDCRA+N IT++ RH L + G + HQ L D
Sbjct: 746 SWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVELRSGY---HQIHMKLGDE 802
Query: 175 F*D*--TRF--V*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKTWEE 342
+ T+F +VMPFGL NAP+TFMRLMNEVLRP+I FV+V+ D+ILI+SK+ E
Sbjct: 803 WKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDILIYSKSMGE 862
Query: 343 HLG-----FEVVTGAQTTVECEDV*VCLGEFNLLGIHN*SRRVEGGSRKSQGHHRLAYTL 507
H F + A+ E C + LG + +E K +
Sbjct: 863 HFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPK 922
Query: 508 YNNLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKLLKQK*SPV- 684
+ G + + FS IAAPL+ L + F + + F +LK K +
Sbjct: 923 TVSQVRSFLGLAGFYCRFVQDFSTIAAPLNALTKKGVPFTWGTSQENAFHMLKHKLTHAP 982
Query: 685 ---LSNL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYDKEIYALHQA 846
L + + FE+E DAS LG LQ+G+ +AY+S SG VLNYSTYDKE+YAL +
Sbjct: 983 LLQLPDFNKTFELECDASGIGLGGVLLQEGKLVAYFSEKLSGPVLNYSTYDKELYALVRT 1042
Query: 847 MNYWRVYLAGKEVIVHSNHRHLQYL 921
+ W+ YL KE ++HS+H L+++
Sbjct: 1043 LETWQHYLWPKEFVIHSDHESLKHI 1067
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 164 bits (414), Expect = 6e-38
Identities = 118/325 (36%), Positives = 167/325 (51%), Gaps = 18/325 (5%)
Frame = +1
Query: 1 TWRMCVDCRALNMITVKNRH*--ELKTCWISIKGPASLQSLTSNPYITK*HQTRRHLEDN 174
T RMCVDCR +N IT++ RH L + G + HQ R L D
Sbjct: 811 TSRMCVDCRGINNITIRYRHPIPRLDDMLDELSGSTIFSKVDLRSGY---HQIRMKLGDE 867
Query: 175 F*D*--TRF--V*MVVMPFGLCNAPATFMRLMNEVLRPYIEDFVIVHLDNILIFSKTWEE 342
+ T+F +VMPFGL NAP+TFMRLMNEVLR +I FV+V+ D+ILI+SK+ EE
Sbjct: 868 WKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSKSLEE 927
Query: 343 HLG-----FEVVTGAQTTVECEDV*VCLGEFNLLGIHN*SRRVEGGSRKSQGHHRLAYTL 507
HL F + A+ C + LG + +E K + +
Sbjct: 928 HLEHLRAVFIALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPHPK 987
Query: 508 YNNLGS*LHGSMSVFDEVHKAFSQIAAPLHDLLRANQKFE*TSKHTDTFKLLKQK*S--P 681
G + + FS IAAPL+++ + + F + + F +LK K + P
Sbjct: 988 TVTQVRSFLGLAGFYRRFVRDFSTIAAPLNEVTKKDVPFVWGTAQEEAFTVLKDKLTYAP 1047
Query: 682 VLS--NL*RNFEVEADASNYALG---LQDGRSIAYYSRMFSGAVLNYSTYDKEIYALHQA 846
+L N + FE+E DAS LG LQDG+ +AY+S FSG LNYSTYDKE+YAL +
Sbjct: 1048 LLQLPNFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKFSGPSLNYSTYDKELYALVRT 1107
Query: 847 MNYWRVYLAGKEVIVHSNHRHLQYL 921
+ W+ YL KE ++HS+H L+++
Sbjct: 1108 LETWQHYLWPKEFVIHSDHESLKHI 1132