BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00023737
         (773 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       109   2e-25
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           111   6e-25
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   110   1e-24
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678...   105   1e-23
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   101   9e-23
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    95   2e-21
gb|AAD26953.1| putative non-LTR retrolelement reverse transcript...   108   2e-21
ref|XP_004305958.1| PREDICTED: uncharacterized protein LOC101308...   107   4e-21
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...    97   5e-21
gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]        93   1e-20
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    95   2e-20
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    95   2e-20
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA...    93   5e-20
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    93   6e-20
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...    93   3e-19
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]                85   2e-18
dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like ...    81   8e-17
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...    77   6e-15
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]               87   7e-15
ref|XP_002877469.1| predicted protein [Arabidopsis lyrata subsp....    87   7e-15

>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  109 bits (273), Expect(2) = 2e-25
 Identities = 73/232 (31%), Positives = 104/232 (44%), Gaps = 11/232 (4%)
 Frame = +3

Query: 108  RYIWILHSEEQNLWSRWSRIELLKASSFWMASLPSSPSWFWRKLFSIKNLFRSLLVYHCG 287
            R IW L   + +LW+ W  +  L   SFW      S SW W++L S++ L    LV   G
Sbjct: 882  RLIWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVG 941

Query: 288  RGDNVFFWHDKWHSLGTLWDLCSADDKLEANRVHLNSNVKLSSLIENDSWNWPPVFSAKL 467
             G    +W+D W SLG L+ +   D    + RV L +  K++S    D W  P   SA  
Sbjct: 942  NGLKADYWYDNWTSLGPLFRII-GDIGPSSLRVPLLA--KVASAFSEDGWRLPVSRSAPA 998

Query: 468  QQIRS-LC----PSI----VCGGSWSWDG--RPKFSVANSYNFLYQKGATVDWARMIWDV 614
            + I   LC    PS     V    WS +G     FS A ++  +  K     WA  IW  
Sbjct: 999  KGIHDHLCTVPVPSTAQEDVDRYEWSVNGFLCQGFSAAKTWEAIRPKATVKSWASSIWFK 1058

Query: 615  NGIPRHNFVC*LVMHRGLSTKDKMFSWKVVPNDICYLCGLEIETHDHLFLNC 770
              +P++ F   +     L T+ ++ SW  + +D C LC    E+ DHL L C
Sbjct: 1059 GAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSDACVLCSFASESRDHLLLIC 1110



 Score = 33.5 bits (75), Expect(2) = 2e-25
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 2   WCGYDKKCRG-KVNWEMVCSPISEGGLGIK 88
           W G  ++ +G KV+W  +C P SEGGLG++
Sbjct: 841 WSGNIEQAKGIKVSWAALCLPKSEGGLGLR 870


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  111 bits (278), Expect(2) = 6e-25
 Identities = 66/233 (28%), Positives = 104/233 (44%), Gaps = 10/233 (4%)
 Frame = +3

Query: 102  LARYIWILHSEEQNLWSRWSRIELLKASSFWMASLPSSPSWFWRKLFSIKNLFRSLLVYH 281
            L R IW+L   + +LW++W R   L  +SFW  +   +  W W+ L +++ L    +   
Sbjct: 740  LLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAK 799

Query: 282  CGRGDNVFFWHDKWHSLGTLWDLCSADDKLEANRVHLNSNVKLSSLIENDSWNWPPVFS- 458
             G G  V FW D W SLG L         + +  + +  + K++  I+   W  P   S 
Sbjct: 800  VGNGGTVSFWFDCWTSLGPLIKYLG---DVGSRPLRIPFSAKVADAIDGSGWRLPLSRSL 856

Query: 459  ---AKLQQIRSLCP--SIVCGGSWSW----DGRPKFSVANSYNFLYQKGATVDWARMIWD 611
               + L  + SL P   ++   S+SW         FS A ++  L  +     WAR +W 
Sbjct: 857  TADSILSHLASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEVLRPRRPVKRWARSVWF 916

Query: 612  VNGIPRHNFVC*LVMHRGLSTKDKMFSWKVVPNDICYLCGLEIETHDHLFLNC 770
               +P+H F         L T+ ++ SW +V +  C LC  + ET DHL L C
Sbjct: 917  KGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLC 969



 Score = 29.6 bits (65), Expect(2) = 6e-25
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 2   WCG-YDKKCRGKVNWEMVCSPISEGGLGIK 88
           W G  D +   KV+W   C P SEGGLG +
Sbjct: 701 WAGSIDGRKSSKVSWVDCCLPKSEGGLGFR 730


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  110 bits (275), Expect(2) = 1e-24
 Identities = 65/233 (27%), Positives = 104/233 (44%), Gaps = 10/233 (4%)
 Frame = +3

Query: 102  LARYIWILHSEEQNLWSRWSRIELLKASSFWMASLPSSPSWFWRKLFSIKNLFRSLLVYH 281
            L R IW+L   + +LW++W R   L  +SFW  +   +  W W+ L +++ L    +   
Sbjct: 740  LLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAK 799

Query: 282  CGRGDNVFFWHDKWHSLGTLWDLCSADDKLEANRVHLNSNVKLSSLIENDSWNWPPVFS- 458
             G G  V FW D W SLG L         + +  + +  + K++  I+   W  P   S 
Sbjct: 800  VGNGGTVSFWFDCWTSLGPLIKYLG---DVGSRPLRIPFSAKVADAIDGSGWRLPLSRSL 856

Query: 459  ---AKLQQIRSLCP--SIVCGGSWSW----DGRPKFSVANSYNFLYQKGATVDWARMIWD 611
               + L  + SL P   ++   S+SW         FS A ++  L  +     WA+ +W 
Sbjct: 857  TADSILSHLASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEVLRPRRPVKRWAKSVWF 916

Query: 612  VNGIPRHNFVC*LVMHRGLSTKDKMFSWKVVPNDICYLCGLEIETHDHLFLNC 770
               +P+H F         L T+ ++ SW +V +  C LC  + ET DHL L C
Sbjct: 917  KGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLC 969



 Score = 29.6 bits (65), Expect(2) = 1e-24
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 2   WCG-YDKKCRGKVNWEMVCSPISEGGLGIK 88
           W G  D +   KV+W   C P SEGGLG +
Sbjct: 701 WAGSIDGRKSSKVSWVDCCLPKSEGGLGFR 730


>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
           putative protein [Arabidopsis thaliana]
          Length = 473

 Score =  105 bits (262), Expect(2) = 1e-23
 Identities = 72/245 (29%), Positives = 105/245 (42%), Gaps = 24/245 (9%)
 Frame = +3

Query: 108 RYIWILHSEEQNLWSRWSRIELLKASSFWMASLPSS-PSWFWRKLFSIKNLFRSLLVYHC 284
           + IW + S   +LW +W +  LLK  SFW     +S  SW WRK+   +++ R+L     
Sbjct: 138 KLIWRIISHADSLWVKWIQSSLLKKVSFWAVRENTSLGSWMWRKILKFRDIARTLCKVEI 197

Query: 285 GRGDNVFFWHDKWHSLGTLWDLCSADDK-------------LEA--NRVHLNSNVKLSSL 419
             G    FW+D W  LG L D  SA D+             +EA  NR          + 
Sbjct: 198 NNGARTSFWYDDWSDLGRLID--SAGDRGAIDLGINKHATVVEAWGNRRRRRHRTNFLNR 255

Query: 420 IEND---SWNWPPVFSAKLQQIRSLCPSIVCGGSWSWDGRPK-----FSVANSYNFLYQK 575
           +E     SWN     S    + R+L           W G+       FS  +++N +   
Sbjct: 256 VEERLILSWN-----SRNQAEDRAL-----------WKGKENRFRSIFSTKDTWNHIRTV 299

Query: 576 GATVDWARMIWDVNGIPRHNFVC*LVMHRGLSTKDKMFSWKVVPNDICYLCGLEIETHDH 755
              V W + +W    IP+H F   L +H  LST D+M  W +  +  C LC   +E+ DH
Sbjct: 300 SNKVAWYKGVWFAQAIPKHAFCMWLAVHNRLSTGDRMTLWNMGVDATCILCNKALESRDH 359

Query: 756 LFLNC 770
           LF +C
Sbjct: 360 LFFSC 364



 Score = 31.2 bits (69), Expect(2) = 1e-23
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 2   WCGYD-KKCRGKVNWEMVCSPISEGGLGIK 88
           W G +    + K+ W  VC P  EGGLG++
Sbjct: 97  WSGGELNTSKAKITWAFVCKPKEEGGLGLR 126


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  101 bits (251), Expect(2) = 9e-23
 Identities = 68/232 (29%), Positives = 103/232 (44%), Gaps = 11/232 (4%)
 Frame = +3

Query: 108  RYIWILHSEEQNLWSRWSRIELL-KASSFWMASLPSSPSWFWRKLFSIKNLFRSLLVYHC 284
            R IW+L S   +LW  W +   L K++SFW        SW W+ L  ++ +    +  + 
Sbjct: 779  RMIWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIRCNV 838

Query: 285  GRGDNVFFWHDKWHSLGTLWDLCSADDKLEANRVHLNSNVKLSSLIENDSWNWPPVFSAK 464
            G G +  FW D W   G L      +   +  RVHLN+  K+S +  ++ W+     S +
Sbjct: 839  GNGRDASFWFDNWTPFGPLIKFLGNEGPRDL-RVHLNA--KISDVCTSEGWSIADPRSDQ 895

Query: 465  LQQIRSLCPSIVCGG------SWSWDGRPK----FSVANSYNFLYQKGATVDWARMIWDV 614
               + +   +I          S+ W    K    FS A +++ L    A V WAR +W  
Sbjct: 896  ALSLHTHLTNISMPSDAQDLDSYDWVVDNKVCQGFSAAATWSALRPSSAPVPWARAVWFK 955

Query: 615  NGIPRHNFVC*LVMHRGLSTKDKMFSWKVVPNDICYLCGLEIETHDHLFLNC 770
               P+H F         L TK ++ SW +  +  C LC L  ET DHLFL+C
Sbjct: 956  GATPKHAFHLWTAHLDRLPTKVRLASWGMQIDTTCGLCSLHPETRDHLFLSC 1007



 Score = 32.7 bits (73), Expect(2) = 9e-23
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 14  DKKCRGKVNWEMVCSPISEGGLGIK 88
           DKK   KV W  VC P +EGG+G++
Sbjct: 743 DKKGIAKVAWSQVCLPKAEGGIGLR 767


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 95.1 bits (235), Expect(2) = 2e-21
 Identities = 61/228 (26%), Positives = 97/228 (42%), Gaps = 6/228 (2%)
 Frame = +3

Query: 108  RYIWILHSEEQNLWSRWSRIELLKASSFW-MASLPSSPSWFWRKLFSIKNLFRSLLVYHC 284
            + +W + S   +LW +W    LL+ +SFW +    S  SW W+KL   + + ++L     
Sbjct: 889  KLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEV 948

Query: 285  GRGDNVFFWHDKWHSLGTLWDLCSADDKLE---ANRVHLNS--NVKLSSLIENDSWNWPP 449
            G G    FW+D W  LG L +       ++   + R+ +      +      ND +N   
Sbjct: 949  GNGKQTSFWYDNWSDLGQLLERTGDRGLIDLGISRRMTVEEAWTNRRQRRHRNDVYNVIE 1008

Query: 450  VFSAKLQQIRSLCPSIVCGGSWSWDGRPKFSVANSYNFLYQKGATVDWARMIWDVNGIPR 629
                K    R+     V     S   R  FS  ++++      A V W ++IW  +  P+
Sbjct: 1009 DALKKSWDTRTETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPK 1068

Query: 630  HNFVC*LVMHRGLSTKDKMFSWKVVPNDICYLCGLEIETHDHLFLNCS 773
            ++F   L  H  L T D+M +W       C  C   +ET DHLF  CS
Sbjct: 1069 YSFCSWLAAHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCS 1116



 Score = 34.3 bits (77), Expect(2) = 2e-21
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 2   WCGYDKKC-RGKVNWEMVCSPISEGGLGIK 88
           W G +    + K++W MVC P  EGGLG++
Sbjct: 848 WSGTEMNSNKAKISWHMVCKPKDEGGLGLR 877


>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 323

 Score =  108 bits (270), Expect = 2e-21
 Identities = 64/213 (30%), Positives = 98/213 (46%), Gaps = 14/213 (6%)
 Frame = +3

Query: 174 LKASSFWMASLPSSPSWFWRKLFSIKNLFRSLLVYHCGRGDNVFFWHDKWHSLGTLWDLC 353
           L  +SFW  +  SS SW WRKL  ++ L R  LV   G G+   FW D W   G L DL 
Sbjct: 5   LSKTSFWTLNPYSSGSWIWRKLCKLRPLARPFLVCEIGSGETASFWQDNWTGQGPLIDLT 64

Query: 354 SADDKLEANRVHLNSNVKLSSLIENDSWNWPPVFSAK---LQQIRSLCPS----IVCGGS 512
             +       V +  N  +   +  D+W W     ++   +  ++S+ PS    I C   
Sbjct: 65  GTNGP---RSVGMPLNAVVRDALRGDNW-WLSSSRSRNPSIALLKSVLPSSESMIECQHD 120

Query: 513 WSWDGRPK-------FSVANSYNFLYQKGATVDWARMIWDVNGIPRHNFVC*LVMHRGLS 671
             +  +P        FS + ++  L   G  V W + +W  + IP+H F+C +   + L 
Sbjct: 121 DVYKWKPDHHAPSNIFSASKTWTALNPDGVLVPWQKSVWFKDRIPKHAFICWVAAWKRLH 180

Query: 672 TKDKMFSWKVVPNDICYLCGLEIETHDHLFLNC 770
           T+D++  W +    +C LC +  ETHDHLF  C
Sbjct: 181 TRDRLTQWGLNIPTVCVLCNVVDETHDHLFFQC 213


>ref|XP_004305958.1| PREDICTED: uncharacterized protein LOC101308407 [Fragaria vesca
           subsp. vesca]
          Length = 177

 Score =  107 bits (268), Expect = 4e-21
 Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 6/174 (3%)
 Frame = +3

Query: 102 LARYIWILHSEEQNLWSRWSRIELLKASSFWMASLPSSPSWFWRKLFSIKNLFRSLLVYH 281
           +AR+I IL +++ +LWS W ++  L+  SFWM S P   SW WRKL  I++  R  + + 
Sbjct: 1   MARHIRILLTDDSSLWSSWIKVNFLRDKSFWMVSTPQICSWNWRKLLKIRDFIRPSIKHI 60

Query: 282 CGRGDNVFFWHDKWHSLGTLWDLCSADDKLEANRVHLNSNVKLSSLIENDSWNWPPVFSA 461
            G G + +FWHD WH  G L         + +    + SN  +SS+++ +SW WP   ++
Sbjct: 61  IGDGKSTYFWHDYWHPFGPLLPRLGPGAMINSG---IPSNALVSSIVKGESWCWPLSTNS 117

Query: 462 KLQQIRS----LCPSIVCGGSWSW--DGRPKFSVANSYNFLYQKGATVDWARMI 605
            + ++ S    L P+  C  S  W       FS A++ + ++     VDWA+++
Sbjct: 118 AILRVASNVEGLIPNSSCKDSCIWLPSTSGIFSTASTMDQIWIHHPVVDWAKIV 171


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score = 96.7 bits (239), Expect(2) = 5e-21
 Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 15/237 (6%)
 Frame = +3

Query: 108 RYIWILHSEEQNLWSRWSRIELLKASSFWMASLPSS-PSWFWRKLFSIKNLFRSLLVYHC 284
           + IW + S + +LW +WS++ LLK  SFW  +  SS  SW W+K+   +   +       
Sbjct: 294 KLIWRVTSNDDSLWVKWSKMNLLKQESFWSLTPNSSLGSWMWKKMLKYRETAKPFSRVEV 353

Query: 285 GRGDNVFFWHDKWHSLGTLWDLCSADDKLEANRVHLNSNVKLSSLIENDSWNWPPVFSAK 464
             G    FW D W  +G L D+     +++   +  N  V        ++W+       +
Sbjct: 354 NNGARTSFWFDNWSGMGHLMDVTGQRGQIDLG-ISRNKTVA-------EAWSNRRRRKHR 405

Query: 465 LQQIRSL---------CPSIVCGGSWSWDG-----RPKFSVANSYNFLYQKGATVDWARM 602
            +Q+  +           +++   +  W G     +  FS  +++N + +K   V W + 
Sbjct: 406 TEQLNDIEAALNQKYQTRNLLREDATLWRGKGDVFKTSFSTKDTWNQVRKKSNEVAWYKG 465

Query: 603 IWDVNGIPRHNFVC*LVMHRGLSTKDKMFSWKVVPNDICYLCGLEIETHDHLFLNCS 773
           +W  +  P++ F   L +   LST  +M  W    +  C  C   IET DHLF +CS
Sbjct: 466 VWFSHSTPKYQFCTWLALRNRLSTGYRMQLWNNGSDVKCTFCSTSIETRDHLFFSCS 522



 Score = 31.6 bits (70), Expect(2) = 5e-21
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 2   WCGYD-KKCRGKVNWEMVCSPISEGGLGIK 88
           W G +  + + KV+W+ +C P  EGGLG++
Sbjct: 253 WSGPELHRRKAKVSWDDICKPKQEGGLGLR 282


>gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]
          Length = 438

 Score = 92.8 bits (229), Expect(2) = 1e-20
 Identities = 61/233 (26%), Positives = 98/233 (42%), Gaps = 12/233 (5%)
 Frame = +3

Query: 108 RYIWILHSEEQNLWSRWSRIELLKAS--SFWMASLPSSPSWFWRKLFSIKNLFRSLLVYH 281
           + IW+L S   +LW  W     L  S  +FW+    ++ SW WR L  ++ L    L   
Sbjct: 153 KLIWLLFSNSGSLWVAWHLFHNLSTSVSNFWLIKEGTTDSWNWRCLLRLRPLASKFLFCS 212

Query: 282 CGRGDNVFFWHDKWHSLGTLWDLCSADDKLEANRVHLNSNVKLSSLIENDSWNWPPVFSA 461
            G G    FW D W   G L     +D      R+ L S  K++ ++  + W  P   S+
Sbjct: 213 IGNGLTASFWADSWTPFGPLLTFIGSDGPRN-QRIPLCS--KVADVVNGNRWLLPSPRSS 269

Query: 462 KLQQIRSLCPSI------VCGGSWSWDGRP----KFSVANSYNFLYQKGATVDWARMIWD 611
               + +   ++      +   S+ W         FS A+++N L  K     W   +W 
Sbjct: 270 NALNLHAFLTTLSIPLQPLVEDSYLWKVENCSDIGFSSAHTWNALRHKEVEKPWVSSVWF 329

Query: 612 VNGIPRHNFVC*LVMHRGLSTKDKMFSWKVVPNDICYLCGLEIETHDHLFLNC 770
               P++ F   +     L TK +M +W  + + +C LC +  ET DHL L+C
Sbjct: 330 KGVTPKNAFNMWITHQDRLRTKLRMIAWGFLVSPVCALCQVGFETRDHLMLSC 382



 Score = 34.3 bits (77), Expect(2) = 1e-20
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 8   GYDKKCRGKVNWEMVCSPISEGGLGIK 88
           G D+  + KV+W  VC P +EGGLG++
Sbjct: 115 GTDEHHKAKVSWSTVCLPKAEGGLGVR 141


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score = 94.7 bits (234), Expect(2) = 2e-20
 Identities = 61/241 (25%), Positives = 103/241 (42%), Gaps = 20/241 (8%)
 Frame = +3

Query: 108  RYIWILHSEEQNLWSRWSRIELLKASSFWMASLPSS-PSWFWRKLFSIKNLFRSLLVYHC 284
            + IW L S + +LW +W+R+ LLK  SFW     S+  SW WR+L   + + +S      
Sbjct: 610  KLIWRLLSCQDSLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEV 669

Query: 285  GRGDNVFFWHDKWHSLGTLWDLCSADDKLEANRVHLNSNVKLSSLIENDSWN-------- 440
              G N  FW D W   G L +L  A   ++   + ++ ++ L+     ++W+        
Sbjct: 670  NNGVNTSFWFDNWSEKGPLINLTGARGAID---MGISRHMTLA-----EAWSRRRRKRHR 721

Query: 441  ------WPPVFSAKLQQIRSLCPSIVCGGSWSWDG-----RPKFSVANSYNFLYQKGATV 587
                  +  +   K Q       +I    +  W G     + +FS  +++N +       
Sbjct: 722  VEILNEFEEILLQKYQH-----RNIELEDAILWRGKEDVFKARFSTKDTWNHIRTSSNQR 776

Query: 588  DWARMIWDVNGIPRHNFVC*LVMHRGLSTKDKMFSWKVVPNDICYLCGLEIETHDHLFLN 767
             W + +W  +  P+ +F   L +   LST D+M +W       C  C   +ET DHLF  
Sbjct: 777  AWHKGVWFAHATPKFSFCAWLAIRNRLSTGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQ 836

Query: 768  C 770
            C
Sbjct: 837  C 837



 Score = 31.2 bits (69), Expect(2) = 2e-20
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 26  RGKVNWEMVCSPISEGGLGIK 88
           + KV+W+ +C P  EGGLG++
Sbjct: 578 KAKVSWDEICKPKKEGGLGLQ 598


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 94.7 bits (234), Expect(2) = 2e-20
 Identities = 60/227 (26%), Positives = 97/227 (42%), Gaps = 6/227 (2%)
 Frame = +3

Query: 108 RYIWILHSEEQNLWSRWSRIELLKASSFW-MASLPSSPSWFWRKLFSIKNLFRSLLVYHC 284
           + IW L S   +LW +W R  +++  SFW +    +  SW WRKL   ++L      Y  
Sbjct: 109 KLIWRLLSSS-SLWVQWLRQYVIRKGSFWSLRDTSTLGSWMWRKLLKYRHLASGFTQYEI 167

Query: 285 GRGDNVFFWHDKWHSLGTLWDLCSADDKLEAN-RVHLNSNVKLSSLIENDSWNWPPVFSA 461
             G  V FWHD W  LG L  +      ++    +H      L+        +      A
Sbjct: 168 RNGKGVSFWHDNWSPLGPLIAISGTRGCIDMGIDIHATVAEALTHRRRRHRADHLNQMEA 227

Query: 462 KLQQIRSL----CPSIVCGGSWSWDGRPKFSVANSYNFLYQKGATVDWARMIWDVNGIPR 629
           +L+++R+        +V         +P FS   ++    ++    +W + IW  +  P+
Sbjct: 228 QLEELRTKGLVETEDVVLWKGKGGRFKPSFSTKETWADTREQKPRNEWYQGIWFSHATPK 287

Query: 630 HNFVC*LVMHRGLSTKDKMFSWKVVPNDICYLCGLEIETHDHLFLNC 770
           ++F+  L     LST D+M SW    N  C  C  + ET +HLF  C
Sbjct: 288 YSFITWLATKNRLSTGDRMMSWNAGVNLSCVFCQEQTETRNHLFFTC 334



 Score = 31.2 bits (69), Expect(2) = 2e-20
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 2   WCGYD-KKCRGKVNWEMVCSPISEGGLGIK 88
           W G +  + + KV+W  VC P  EGGLG++
Sbjct: 68  WSGPELNRKKAKVSWNDVCMPKEEGGLGLR 97


>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1| AT4g02490
            [Arabidopsis thaliana]
          Length = 657

 Score = 92.8 bits (229), Expect(2) = 5e-20
 Identities = 65/235 (27%), Positives = 98/235 (41%), Gaps = 14/235 (5%)
 Frame = +3

Query: 108  RYIWILHSEEQNLWSRWSRIELLKASSFWMASLPSSPSWFWRKLFSIKNLFRSLLVYHCG 287
            + IW+L +   +LW  W R                   W WRKL  ++ + R  ++   G
Sbjct: 430  KLIWLLFTASGSLWVSWVR-------------------WVWRKLCKLREVARPFVICEVG 470

Query: 288  RGDNVFFWHDKWHSLGTLWDLCSADDKLEANRVHLNSNVKLSSLIENDSWNWPPVFSAK- 464
             G    FW D W   G L  L           V L+    +   I ND W W     ++ 
Sbjct: 471  SGITARFWQDNWTGHGPLIHLTGLTGP---QLVGLSITSVVRDAIRNDDW-WIASSRSRN 526

Query: 465  --LQQIRSLCPSIV----C--GGSWSW---DGRP--KFSVANSYNFLYQKGATVDWARMI 605
              +  ++SL P +     C    S+ W   D  P  KFS A+++  L     +V W + +
Sbjct: 527  PVILLLKSLLPPVGNLVDCEHDDSYLWKVGDRVPSSKFSTADTWRALQPFSVSVSWHKAV 586

Query: 606  WDVNGIPRHNFVC*LVMHRGLSTKDKMFSWKVVPNDICYLCGLEIETHDHLFLNC 770
            W  N +P+H F+  +     L T+D++ SW ++    C LC L  ET DHLF  C
Sbjct: 587  WFTNQVPKHAFISWVTAWNRLHTRDRLRSWGLIVPAECVLCNLVDETRDHLFFAC 641



 Score = 32.0 bits (71), Expect(2) = 5e-20
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 2   WCGYDKKCR-GKVNWEMVCSPISEGGLGIK 88
           W G     R  K++W++VCS    GGLG+K
Sbjct: 389 WSGAPNSAREAKISWDIVCSSKESGGLGLK 418


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 92.8 bits (229), Expect(2) = 6e-20
 Identities = 59/229 (25%), Positives = 104/229 (45%), Gaps = 8/229 (3%)
 Frame = +3

Query: 108  RYIWILHSEEQNLWSRWSRIELLKASSFWMASLPSS-PSWFWRKLFSIKNLFRSLLVYHC 284
            + IW L S + +LW  W    +++  +FW A+  SS  SW W+KL   + L +S+     
Sbjct: 1186 KLIWRLLSTQPSLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVEV 1245

Query: 285  GRGDNVFFWHDKWHSLGTLWDLCSADDKLEANRVHLNSNVKLSSLIENDSWNWPPVFS-- 458
              G +  FW+D W  LG L D+      ++   + L +N++          +   +++  
Sbjct: 1246 RNGSSTSFWYDHWSHLGRLLDITGTRRVIDLG-IPLETNLETVLRTHQHRQHRAAIYNRI 1304

Query: 459  -AKLQQI----RSLCPSIVCGGSWSWDGRPKFSVANSYNFLYQKGATVDWARMIWDVNGI 623
             A++Q++    R   P I    S   D   +F    ++N +       +W + +W     
Sbjct: 1305 NAEIQRLQQQEREAGPDISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWFPYST 1364

Query: 624  PRHNFVC*LVMHRGLSTKDKMFSWKVVPNDICYLCGLEIETHDHLFLNC 770
            P+++F+  L +   LST D++ +W       C LC    ET DHLF +C
Sbjct: 1365 PKYSFLLWLTVQNRLSTGDRIKAWNSGQLVTCTLCNNAEETRDHLFFSC 1413



 Score = 31.6 bits (70), Expect(2) = 6e-20
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 26   RGKVNWEMVCSPISEGGLGIK 88
            + K+ W  +C P  EGGLGIK
Sbjct: 1154 KAKIAWSSICQPKKEGGLGIK 1174


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score = 93.2 bits (230), Expect(2) = 3e-19
 Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 12/234 (5%)
 Frame = +3

Query: 108  RYIWILHSEEQNLWSRWSRIELLKASSFWMASLPSSPSWFWRKLFSIKNLFRSLLVYHCG 287
            R IW+L +   +LW  W+    L+  +FW A   S  SW W+ +  ++ L +  L    G
Sbjct: 881  RLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGLRPLAKRFLRGAVG 940

Query: 288  RGDNVFFWHDKWHSLGTLWDLCSADDKLEANRVHLNSNVKLSSLIENDSWNWPP--VFSA 461
             G  + +W+D W +LG L +   A    +   +H ++ V  +S   +  W  P     +A
Sbjct: 941  NGQLLSYWYDHWSNLGPLIEAIGASGP-QLTGIHESAVVTEAS--SSTGWILPSARTRNA 997

Query: 462  KLQQIRSL-----CPSIVCG-GSWSW----DGRPKFSVANSYNFLYQKGATVDWARMIWD 611
             L  +RS       PS   G  +++W         FS   ++  L Q+  T  WA  +W 
Sbjct: 998  SLANLRSTLLNSPAPSGDRGEDTYTWYIEGSSSTSFSSKLTWECLRQRDTTKLWAAAVWY 1057

Query: 612  VNGIPRHNFVC*LVMHRGLSTKDKMFSWKVVPNDICYLCGLEIETHDHLFLNCS 773
               IP++ F   +     L  + +   W      +C +C  E ET DHLF++C+
Sbjct: 1058 KGCIPKYAFNFWVAHLNRLPVRARTTHWSTNRPSLCCVCQRETETRDHLFIHCT 1111



 Score = 28.9 bits (63), Expect(2) = 3e-19
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 8   GYDKKCRG--KVNWEMVCSPISEGGLGIK 88
           G D   RG  KV+W+  C P +EGGLG++
Sbjct: 841 GNDITRRGDIKVSWQNSCLPKAEGGLGLR 869


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score = 85.1 bits (209), Expect(2) = 2e-18
 Identities = 54/238 (22%), Positives = 101/238 (42%), Gaps = 16/238 (6%)
 Frame = +3

Query: 108  RYIWILHSEEQNLWSRWSRIELLKASSFW-MASLPSSPSWFWRKLFSIKNLFRSLLVYHC 284
            + +W + S   +LW++W    L++  S W +    S  SW WRK+  I+++ +S      
Sbjct: 536  KLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKSFSRVEV 595

Query: 285  GRGDNVFFWHDKWHSLGTLWDLCSADDKLEANRVHLNSNVKLSSLIENDSWNWPPVFSAK 464
            G G++  FW+D W + G L D       ++   +   ++V        D+W        +
Sbjct: 596  GNGESASFWYDHWSAHGRLIDTVGDKGTIDLG-IPREASVA-------DAWTRRSRRRHR 647

Query: 465  LQQIRSLCPSIV--------CGGSWSWDG-----RPKFSVANSYNFLYQKGATVDWARMI 605
               +  +   +            +  W G     +P FS  ++++ +    +TV W + +
Sbjct: 648  TSLLNEIEEMMAYQRIHHSDAEDTVLWRGKNDVFKPHFSTRDTWHLIKATSSTVSWHKGV 707

Query: 606  WDVNGIPRHNFVC*LVMHRGLSTKDKMFSWKV--VPNDICYLCGLEIETHDHLFLNCS 773
            W  +  P++     L +H  L T D+M  W      +  C LC    +T +HLF +CS
Sbjct: 708  WFRHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSCS 765



 Score = 33.9 bits (76), Expect(2) = 2e-18
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 2   WCGYDKKC-RGKVNWEMVCSPISEGGLGIK 88
           W G +    + K++W++VC P +EGGLG++
Sbjct: 495 WSGSEMSSHKAKISWDIVCKPKAEGGLGLR 524


>dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana] gi|93007380|gb|ABE97193.1|
           hypothetical protein At5g13655 [Arabidopsis thaliana]
          Length = 385

 Score = 80.9 bits (198), Expect(2) = 8e-17
 Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 8/231 (3%)
 Frame = +3

Query: 102 LARYIWILHSEEQNLWSRWSRIELLKASSFWMASLPSSP-SWFWRKLFSIKNLFRSLLVY 278
           + + IW + S + +LW  W +  LL+  S W     SS  SW W+KL   ++  +     
Sbjct: 46  MLKLIWRILSAKGSLWVDWVKKHLLRGGSLWAVKETSSRGSWIWKKLLKYRDKAKCFHKV 105

Query: 279 HCGRGDNVFFWHDKWHSLGTLWDLCSADDKLEANRVHLNSNVKLSSLIENDSWNWPPVFS 458
               G++  FW+D W SLG L+D       ++   +  +S +  + +      +  P+ +
Sbjct: 106 DVRNGESTSFWYDSWSSLGCLYDKFGERGCIDMG-IPKDSTLSSAIMTTRRRKHRQPLLN 164

Query: 459 A------KLQQIRSLCPSIVCGGSWSWDG-RPKFSVANSYNFLYQKGATVDWARMIWDVN 617
           A      K +Q R +    V       DG  P F    +++ +      +   R IW  N
Sbjct: 165 AVETEIQKQKQSRIVTERDVALWKGKEDGFHPTFLSKETWSQIRNTQPEMQGYRGIWFSN 224

Query: 618 GIPRHNFVC*LVMHRGLSTKDKMFSWKVVPNDICYLCGLEIETHDHLFLNC 770
             P++  +  L++   ++T +KM  W    +  C  C    ET +HLF  C
Sbjct: 225 ATPKYALLTWLMVRNRIATGEKMGLWNQNTDTSCIFCKNPNETREHLFFQC 275



 Score = 33.1 bits (74), Expect(2) = 8e-17
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 2  WCGYDKKCRG-KVNWEMVCSPISEGGLGIK 88
          W G     R  KV W +VC+P SEGGLG++
Sbjct: 7  WSGPSLNARKTKVAWSVVCTPKSEGGLGLR 36


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
           subsp. vesca]
          Length = 958

 Score = 77.0 bits (188), Expect(2) = 6e-15
 Identities = 36/77 (46%), Positives = 42/77 (54%)
 Frame = +3

Query: 111 YIWILHSEEQNLWSRWSRIELLKASSFWMASLPSSPSWFWRKLFSIKNLFRSLLVYHCGR 290
           +IW L S   N W+ W ++ LLK +SFW A LPS  SW WRKL  I+ L  S  V   G 
Sbjct: 712 HIWNLVSSSSNFWTDWVKVYLLKGNSFWNAPLPSICSWNWRKLLKIRELCCSFFVNIIGD 771

Query: 291 GDNVFFWHDKWHSLGTL 341
           G     W D WH LG L
Sbjct: 772 GRATSLWFDNWHPLGPL 788



 Score = 30.4 bits (67), Expect(2) = 6e-15
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +2

Query: 2   WCGYDKKCRG----KVNWEMVCSPISEGGLGIK 88
           W G    C G    KV W  +C P  EGGLGIK
Sbjct: 670 WAG---NCSGRAATKVAWSEICLPKCEGGLGIK 699


>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score = 87.0 bits (214), Expect = 7e-15
 Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 13/197 (6%)
 Frame = +3

Query: 219  SWFWRKLFSIKNLFRSLLVYHCGRGDNVFFWHDKWHSLGTLWDLCSADDKLEANRVHLNS 398
            +W WRKL  ++   R  ++   G G    FWHD W   G L  L      L A  + LNS
Sbjct: 852  NWIWRKLCKLRPFARPFIICEVGSGVTASFWHDNWTDHGPLLHLTGPAGPLLAG-LPLNS 910

Query: 399  NVKLSSLIENDSWNWP------PVFSAKLQQIRSLCPSIVC--GGSWSWD-----GRPKF 539
             V+    + +D+W         PV +   + + S    I C    ++ W         +F
Sbjct: 911  VVR--DALRDDTWRISSSRSRNPVITLLQRVLPSAASLIDCPHDDTYLWKIGHHAPSNRF 968

Query: 540  SVANSYNFLYQKGATVDWARMIWDVNGIPRHNFVC*LVMHRGLSTKDKMFSWKVVPNDIC 719
            S A+++++L     +V W + +W  + +P+  F+C +V H  L T+D++  W       C
Sbjct: 969  STADTWSYLQPSSTSVLWHKAVWFKDHVPKQAFICWVVAHNRLHTRDRLRRWGFSIPPTC 1028

Query: 720  YLCGLEIETHDHLFLNC 770
             LC    E+ +HLF  C
Sbjct: 1029 VLCNDLDESREHLFFRC 1045


>ref|XP_002877469.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297323307|gb|EFH53728.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 328

 Score = 87.0 bits (214), Expect = 7e-15
 Identities = 64/218 (29%), Positives = 90/218 (41%), Gaps = 8/218 (3%)
 Frame = +3

Query: 141 NLWSRWSRIELLKASSFW-MASLPSSPSWFWRKLFSIKNLFRSLLVYHCGRGDNVFFWHD 317
           +LW  W R + L  S  W +    +S S  +RKL  ++           G  D+ FFW D
Sbjct: 43  SLWVAWIRSKYLFTSPLWTLNGKNASYSRIFRKLLQLRPKVLKFFSIKIGNSDSTFFWWD 102

Query: 318 KWHSLGTLWDLCSADDKLEANRVHLNSNVKLSSLIENDSWNWPPVFSAKLQQIRSLCPSI 497
            W   G+L+    +D       + L S V  + L   D W+ P   S K   + S   +I
Sbjct: 103 PWTPFGSLYHFLGSDGPTHLG-ISLFSTV--AELRIEDGWSLPNARSEKQVLLHSFISTI 159

Query: 498 VCGGS-----WSWDGRP--KFSVANSYNFLYQKGATVDWARMIWDVNGIPRHNFVC*LVM 656
               S     W+ DG P   FS    +N +        WA ++W    IPRH     L +
Sbjct: 160 SISSSNDTLVWAVDGIPYKHFSSKAVWNAVRISKPVNYWAPLVWHKAAIPRHVITSWLFI 219

Query: 657 HRGLSTKDKMFSWKVVPNDICYLCGLEIETHDHLFLNC 770
                T D++ SW       C LCGL  E+ +HLF NC
Sbjct: 220 LNRNPTLDRLSSWGYDVELDCLLCGLAHESRNHLFFNC 257