BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00019890
         (2123 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   640   0.0  
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   625   e-176
ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The...   574   e-161
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   545   e-152
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu...   542   e-151
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-...   540   e-151
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr...   540   e-150
ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun...   526   e-146
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-...   506   e-140
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-...   486   e-134
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-...   483   e-133
gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus...   476   e-131
emb|CAD20832.1| sigma factor [Spinacia oleracea]                      474   e-131
ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC ...   464   e-128
ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-...   459   e-126
ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-...   452   e-124
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp....   439   e-120
ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Caps...   436   e-119
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi...   431   e-118
ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago trun...   428   e-117

>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|296081598|emb|CBI20603.3| unnamed protein product
            [Vitis vinifera]
          Length = 561

 Score =  640 bits (1650), Expect = 0.0
 Identities = 341/559 (61%), Positives = 393/559 (70%), Gaps = 1/559 (0%)
 Frame = -3

Query: 1980 MGVGFRLYLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXSMSVSVPSVISGESEILYDD 1801
            MG+GFRL LKW FP+                         S   S PSV S + E LY D
Sbjct: 1    MGMGFRLNLKWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKD 60

Query: 1800 PLKAYACSS-ALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSLQ 1624
            P K +ACSS ALQT END S ME MK K+GK S   L  +   S    GED SA +  LQ
Sbjct: 61   PFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQ 120

Query: 1623 ARKAPYFKXXXXXXXXXXXIFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXSF 1444
            A KA  F            +FADSN + LERDIMVQLGR+GALKLFQ C         SF
Sbjct: 121  ASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSF 180

Query: 1443 DLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHALSLPSKTK 1264
            DL   P + I E Q    +DDH+  +VV SGKKE RK +RER LEKAD I+A  LPSKT 
Sbjct: 181  DLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTI 240

Query: 1263 RKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISLS 1084
            RK  GRP+V+ VKR  N+R +RL+ A NE EMSKGVK+VANLERIR TLE++ GHV SLS
Sbjct: 241  RKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLS 300

Query: 1083 SWAKAAGVDKNVLQKQLRFGWYCRDELLRSTHPLIKYLARNYSGMGVAFEDLLQAGNMGV 904
            +WA+AAGVDK VLQ+QL+FGWYCRDELLRSTH L+ Y+ARNY GMGVAFED+LQAGN+GV
Sbjct: 301  NWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGV 360

Query: 903  LQGAERFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLYK 724
            LQGAERFDHT+GYRFSTY QYW+RKS+S LV RHARG+ IPFTL+R I QIQKARK LYK
Sbjct: 361  LQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYK 420

Query: 723  SHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESPE 544
            SHG+YP D +IAKFTGLSLAKI+SA  CLR+VGS D+   D      LEF PDTSI+SPE
Sbjct: 421  SHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPE 480

Query: 543  EVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIEK 364
            E  M Q  RKDI+ LLKGLD RE+Q+L+LRYG G+ + KSLEEIGR F+VSKEWIRK+EK
Sbjct: 481  EGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEK 540

Query: 363  AALTKLRDEETRTKLSHYL 307
             AL  LRDEE    L HY+
Sbjct: 541  TALANLRDEEICQNLRHYV 559


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  625 bits (1612), Expect = e-176
 Identities = 329/515 (63%), Positives = 379/515 (73%), Gaps = 1/515 (0%)
 Frame = -3

Query: 1848 SVPSVISGESEILYDDPLKAYACSS-ALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDS 1672
            S PSV S + E LY DP K +ACSS ALQT END S ME MK K+GK S   L  +   S
Sbjct: 95   SFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNAS 154

Query: 1671 CFLFGEDDSAFLGSLQARKAPYFKXXXXXXXXXXXIFADSNALSLERDIMVQLGRIGALK 1492
                GED SA +  LQA KA  F            +FADSN + LERDIMVQLGR+GALK
Sbjct: 155  QAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALK 214

Query: 1491 LFQTCXXXXXXXXXSFDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTL 1312
            LFQ C         SFDL   P + I E Q    +DDH+  +VV SGKKE RK +RER L
Sbjct: 215  LFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERAL 274

Query: 1311 EKADKIHALSLPSKTKRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLER 1132
            EKAD I+A  LPSKT RK  GRP+V+ VKR  N+R +RL+ A NE EMSKGVK+VANLER
Sbjct: 275  EKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLER 334

Query: 1131 IRLTLEKDTGHVISLSSWAKAAGVDKNVLQKQLRFGWYCRDELLRSTHPLIKYLARNYSG 952
            IR TLE++ GHV SLS+WA+AAGVDK VLQ+QL+FGWYCRDELLRSTH L+ Y+ARNY G
Sbjct: 335  IRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRG 394

Query: 951  MGVAFEDLLQAGNMGVLQGAERFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTL 772
            MGVAFED+LQAGN+GVLQGAERFDHT+GYRFSTY QYW+RKS+S LV RHARG+ IPFTL
Sbjct: 395  MGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTL 454

Query: 771  SRRINQIQKARKVLYKSHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLN 592
            +R I QIQKARK LYKSHG+YP D +IAKFTGLSLAKI+SA  CLR+VGS D+   D   
Sbjct: 455  NRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWG 514

Query: 591  VKFLEFMPDTSIESPEEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEI 412
               LEF PDTSI+SPEE  M Q  RKDI+ LLKGLD RE+Q+L+LRYG G+ + KSLEEI
Sbjct: 515  ATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEI 574

Query: 411  GRLFHVSKEWIRKIEKAALTKLRDEETRTKLSHYL 307
            GR F+VSKEWIRK+EK AL  LRDEE    L HY+
Sbjct: 575  GRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYV 609


>ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
            gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit
            C, putative [Theobroma cacao]
          Length = 848

 Score =  574 bits (1479), Expect = e-161
 Identities = 301/514 (58%), Positives = 370/514 (71%), Gaps = 2/514 (0%)
 Frame = -3

Query: 1842 PSVISGESEILYDDPLKAYACSSALQTLENDNSKMEDMKFKVGKGSLNHLHNLS--GDSC 1669
            PS +     +   DPLKAYA S+A QTLE    ++E+MK  +GKGS  H H+L+    + 
Sbjct: 334  PSRLPSSGVLSLKDPLKAYASSAAPQTLEKGCLEIEEMKVNIGKGSQAHSHSLTMIDKTH 393

Query: 1668 FLFGEDDSAFLGSLQARKAPYFKXXXXXXXXXXXIFADSNALSLERDIMVQLGRIGALKL 1489
             L G D S+   S QA KA ++             FADS+ L+LER+I++QLGR GALKL
Sbjct: 394  ELIGGDKSSSRTSPQACKASHYSLLMENLDVLEETFADSDVLTLEREILLQLGRFGALKL 453

Query: 1488 FQTCXXXXXXXXXSFDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLE 1309
            F TC           DLSD P +  G+  M  ++D    NIVVCS KK+ RK  RER LE
Sbjct: 454  FNTCLSRTLKASNILDLSDVPANS-GDCNMNLSVDGQKDNIVVCSRKKKQRKKIRERALE 512

Query: 1308 KADKIHALSLPSKTKRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERI 1129
                I    +PS T   R+ +P V+  KR S++RSRRL +A NE EMSKGVKVVANLERI
Sbjct: 513  NPTIISTQLMPSNTLHGRFQKPKVSSAKRVSDSRSRRLRIARNEAEMSKGVKVVANLERI 572

Query: 1128 RLTLEKDTGHVISLSSWAKAAGVDKNVLQKQLRFGWYCRDELLRSTHPLIKYLARNYSGM 949
            R TLE++TG   SLS WA+AAGV + VLQ+ LRFGWYCRDELLRST  L+ Y ARNY G+
Sbjct: 573  RTTLEEETGRAASLSCWAEAAGVSEKVLQQHLRFGWYCRDELLRSTRSLVLYFARNYRGL 632

Query: 948  GVAFEDLLQAGNMGVLQGAERFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLS 769
            G+A EDL+QAG++GVLQGAERFDHTRGYRFSTY Q+W+RKS+S +V RHARGI +P TLS
Sbjct: 633  GIAHEDLIQAGSLGVLQGAERFDHTRGYRFSTYVQFWIRKSVSRIVARHARGIQVPCTLS 692

Query: 768  RRINQIQKARKVLYKSHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNV 589
            R I QIQKARK L KSHGKYP ++ IAKFTGLSLAKI+SA+KC+R+VGS+D+K+GD +N 
Sbjct: 693  RAIVQIQKARKALSKSHGKYPDEDAIAKFTGLSLAKIRSANKCMRVVGSIDQKIGDCMNA 752

Query: 588  KFLEFMPDTSIESPEEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIG 409
            K+LEF+PD S+ SPE+ VM QHM++DI+ LL GLD RE+QV++LRYGL     KSLEEIG
Sbjct: 753  KYLEFIPDLSVRSPEKTVMRQHMKEDIHDLLNGLDARERQVMVLRYGLKGSPPKSLEEIG 812

Query: 408  RLFHVSKEWIRKIEKAALTKLRDEETRTKLSHYL 307
            RLFHVSKEWIR+IE  A+ KLRD+ET   LSHYL
Sbjct: 813  RLFHVSKEWIRRIEMKAMKKLRDKETCRNLSHYL 846


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 560

 Score =  545 bits (1405), Expect = e-152
 Identities = 295/560 (52%), Positives = 384/560 (68%), Gaps = 2/560 (0%)
 Frame = -3

Query: 1980 MGVGFRLYLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXSMS-VSVPSVISGESEILYD 1804
            MG GFRL LK  FP                            S +S  SVIS E +I + 
Sbjct: 1    MGFGFRLNLKLDFPFHSPNSPSRLSSSPSSSFVRGREATSYQSRLSFLSVISEEGDIAHR 60

Query: 1803 DPLKAYACSSALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSLQ 1624
            DPLK YA S A+QT+EN++S+ E  K   GK S   L N+ GD+     ED      S +
Sbjct: 61   DPLKTYAYSYAVQTVENEHSQGEGFKVNFGKRSHFGL-NIIGDAEVSLKEDIFVSPSSTK 119

Query: 1623 ARKAPYFKXXXXXXXXXXXIFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXSF 1444
             R +  F             FADS+A  LE DI++QLG++GALKLF TC           
Sbjct: 120  ERTSR-FSLLLENLNILEQSFADSDASKLEEDILLQLGKLGALKLFNTCLTRTLETTNVL 178

Query: 1443 DLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRER-TLEKADKIHALSLPSKT 1267
            ++SD   ++IGE  +     ++   +VV + KKE RK RRER +  K  K  +L LPS+ 
Sbjct: 179  EVSDVHTEIIGECNINGTSINNQIKVVVHTAKKEERKSRRERASARKGHKSPSLPLPSRP 238

Query: 1266 KRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISL 1087
             +    +P V+  K+ S ++SRRLI+A NE EM++G+KV+A+LE+IR TLE++T  V+SL
Sbjct: 239  IQSGSEKPTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSL 298

Query: 1086 SSWAKAAGVDKNVLQKQLRFGWYCRDELLRSTHPLIKYLARNYSGMGVAFEDLLQAGNMG 907
            S WA+AAG+D  VLQ+QL FGWYCRDEL++ST  L+ Y ARNY G G+A EDLLQAGN+G
Sbjct: 299  SCWAEAAGLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLG 358

Query: 906  VLQGAERFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLY 727
            VL+GAERFDHTRGYRFSTY QYW+RKS+S +V+R ARGI IP TLSR I QIQKARK L 
Sbjct: 359  VLEGAERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQKARKALT 418

Query: 726  KSHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESP 547
             S+GKYP D++IAK+TGLSLAKI+SAS+CLR+VGS+D+K+G+SLN K+LEF+PDTS++SP
Sbjct: 419  TSNGKYPDDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIGESLNAKYLEFLPDTSVQSP 478

Query: 546  EEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIE 367
            EEVVM QHM +D++ LL+ LD RE+QVL+LR+GL D++ KSLEEIGR FHVSKEW+R++E
Sbjct: 479  EEVVMRQHMIQDMHNLLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHFHVSKEWVRRLE 538

Query: 366  KAALTKLRDEETRTKLSHYL 307
            K  +T+LR+EET   L HY+
Sbjct: 539  KRVMTRLRNEETCRNLRHYI 558


>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
            gi|222854562|gb|EEE92109.1| hypothetical protein
            POPTR_0006s25090g [Populus trichocarpa]
          Length = 559

 Score =  542 bits (1397), Expect = e-151
 Identities = 291/561 (51%), Positives = 373/561 (66%), Gaps = 1/561 (0%)
 Frame = -3

Query: 1980 MGVGFRLYLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXSMSVSVPSVISGESEILYDD 1801
            MGVGFRL  KWG P+Q                           +S  SV+S E +IL   
Sbjct: 1    MGVGFRLTPKWGSPMQSHSATNSTSMFSSFSARGMEASVNQARLSFLSVVSEEGDILNKH 60

Query: 1800 PLKAYACSSALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSLQA 1621
              K++ACSSA Q +END  +ME +K  V K S   ++N+ G+      E+ S     L+ 
Sbjct: 61   SFKSFACSSAAQNVENDCLQMERLKMNVDKTSHVSINNMMGNDKVSVEEEISTSHTRLRE 120

Query: 1620 RKAPYFKXXXXXXXXXXXIFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXSFD 1441
            R                 + AD +AL LERDI++QLGR+GAL+ F  C           D
Sbjct: 121  RMTSRISFLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNVLD 180

Query: 1440 LSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTL-EKADKIHALSLPSKTK 1264
            LS  P +  GE + +  + D     VV +GKKE RKFRRER   +   K  +LSLPSKT 
Sbjct: 181  LSAVPTENTGESKTDGMLGDLTGKTVVRTGKKEERKFRRERAASDNGKKTTSLSLPSKTV 240

Query: 1263 RKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISLS 1084
            +    +P    VKR S++ SRR ++A NE +M++GVKV ++LERIR TLE++TG V+SLS
Sbjct: 241  QNNLPKPTF--VKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLS 298

Query: 1083 SWAKAAGVDKNVLQKQLRFGWYCRDELLRSTHPLIKYLARNYSGMGVAFEDLLQAGNMGV 904
             WA+A G+DK VLQ+QL+FGWYCRDEL+++TH L+ Y+ARNY GMG+A EDL+QAGN+G+
Sbjct: 299  CWAEATGLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGL 358

Query: 903  LQGAERFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLYK 724
            LQGAERFD TRGYRFSTY QYW+RKS+  +V RHARGI IP+ LSR IN+IQKARK L  
Sbjct: 359  LQGAERFDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALSN 418

Query: 723  SHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESPE 544
            SHG+YP D ++AKFTGLSLAKI+SA KCLR+V SLD+K+G+    K+ EF+PD SI++PE
Sbjct: 419  SHGRYPDDWEVAKFTGLSLAKIESAQKCLRVVASLDQKIGEGHYAKYSEFIPDMSIQNPE 478

Query: 543  EVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIEK 364
            E VM QHMR++IY LL+GLD REKQV++LRYG  D++ KSL EIGRLF VSKE +RKIEK
Sbjct: 479  EAVMRQHMREEIYDLLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLFRVSKERVRKIEK 538

Query: 363  AALTKLRDEETRTKLSHYLKL 301
              + KLRDE  R  LS Y+ L
Sbjct: 539  KIMIKLRDEGIRRNLSRYMIL 559


>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
          Length = 534

 Score =  540 bits (1392), Expect = e-151
 Identities = 292/561 (52%), Positives = 379/561 (67%), Gaps = 1/561 (0%)
 Frame = -3

Query: 1980 MGVGFRLYLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXSMSVSVPSVISGESEILYDD 1801
            MG+GFRL LKW  PVQ                        S  +S  S IS +S   + D
Sbjct: 1    MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60

Query: 1800 PLKAYACSSA-LQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSLQ 1624
            P+KAY CS    QT+END S+ E+++ K               SC   G+D S+      
Sbjct: 61   PVKAYTCSFVNTQTVENDYSETEEIRQK-------------STSCI--GQDASS------ 99

Query: 1623 ARKAPYFKXXXXXXXXXXXIFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXSF 1444
                  F+            FADS+AL LER+I+ QLG++GALKLF +            
Sbjct: 100  ---RSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156

Query: 1443 DLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHALSLPSKTK 1264
            DLSD   +   E +M+D+ D HM  I+V S +K  RK +  R  E++ + + LSLPS+  
Sbjct: 157  DLSDVHTE---EQKMDDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETYLLSLPSEAL 213

Query: 1263 RKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISLS 1084
            ++   +P +   +R  N+R RRL++A NE EMSKGV+VVANLERI+ TLEK++G    L+
Sbjct: 214  QEGLKQPTIFSAERALNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLN 273

Query: 1083 SWAKAAGVDKNVLQKQLRFGWYCRDELLRSTHPLIKYLARNYSGMGVAFEDLLQAGNMGV 904
             WA+AAGV + VL++ L FGWYCR+EL++ST PL+ +LARNY G+G+ F DLLQAGN+GV
Sbjct: 274  CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333

Query: 903  LQGAERFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLYK 724
            LQGAERFDHTRGY+FSTY QYW+RKSIS +V RHARGI IP  L+R I++IQKARK L  
Sbjct: 334  LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393

Query: 723  SHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESPE 544
            SHGKYP D +IAK+TGLSLA+I+SAS+CLRIVGS+D+K+GD LN K+LEF PD S++SP+
Sbjct: 394  SHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPK 453

Query: 543  EVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIEK 364
            E+VM QHM+KD++++L+ LD RE+QVL+LRYGL DHR KSLEEIG+LFHVSKEWIRK+EK
Sbjct: 454  EIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513

Query: 363  AALTKLRDEETRTKLSHYLKL 301
             A+TKLRD ET   LSH+L L
Sbjct: 514  KAMTKLRDSETCRDLSHFLVL 534


>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
            gi|557553989|gb|ESR64003.1| hypothetical protein
            CICLE_v10007968mg [Citrus clementina]
          Length = 534

 Score =  540 bits (1390), Expect = e-150
 Identities = 293/561 (52%), Positives = 378/561 (67%), Gaps = 1/561 (0%)
 Frame = -3

Query: 1980 MGVGFRLYLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXSMSVSVPSVISGESEILYDD 1801
            MG+GFRL LKW  PVQ                        S  +S  S IS +S   + D
Sbjct: 1    MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60

Query: 1800 PLKAYACSSA-LQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSLQ 1624
            P+KAY CS    QT+END S+ E+++ K               SC   G+D S+      
Sbjct: 61   PVKAYTCSFVNTQTVENDYSETEEIRQK-------------STSCI--GQDASS------ 99

Query: 1623 ARKAPYFKXXXXXXXXXXXIFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXSF 1444
                  F+            FADS+AL LER+I+ QLG++GALKLF +            
Sbjct: 100  ---RSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156

Query: 1443 DLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHALSLPSKTK 1264
            DLSD   +   E +M D+ D HM  I+V S +K  RK +  R  E++ +   LSLPS+  
Sbjct: 157  DLSDVHTE---EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEAL 213

Query: 1263 RKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISLS 1084
            ++   +P +   +R  N+R RRL++A NE EMSKGV+VVANLERI+ TLEK++G   SL+
Sbjct: 214  QEGLKQPTIFSPERALNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN 273

Query: 1083 SWAKAAGVDKNVLQKQLRFGWYCRDELLRSTHPLIKYLARNYSGMGVAFEDLLQAGNMGV 904
             WA+AAGV + VL++ L FGWYCR+EL++ST PL+ +LARNY G+G+ F DLLQAGN+GV
Sbjct: 274  CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333

Query: 903  LQGAERFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLYK 724
            LQGAERFDHTRGY+FSTY QYW+RKSIS +V RHARGI IP  L+R I++IQKARK L  
Sbjct: 334  LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393

Query: 723  SHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESPE 544
            SHGKYP D +IAK+TGLSLA+I+SAS+CLRIVGS+D+K+GD LN K+LEF PD S++SP+
Sbjct: 394  SHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPK 453

Query: 543  EVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIEK 364
            E+VM QHM+KD++++L+ LD RE+QVL+LRYGL DHR KSLEEIG+LFHVSKEWIRK+EK
Sbjct: 454  EIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513

Query: 363  AALTKLRDEETRTKLSHYLKL 301
             A+TKLRD ET   LSH+L L
Sbjct: 514  KAMTKLRDSETCRDLSHFLVL 534


>ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
            gi|462419859|gb|EMJ24122.1| hypothetical protein
            PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  526 bits (1354), Expect = e-146
 Identities = 297/560 (53%), Positives = 374/560 (66%), Gaps = 2/560 (0%)
 Frame = -3

Query: 1980 MGVGFRLYLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXSMS-VSVPSVISGESEILYD 1804
            MG+GFRL LK GFPV                         + + +S  SVIS E E    
Sbjct: 1    MGLGFRLNLKCGFPVHSSHWQTTSPSKISSTSVRGREGSFNSARLSFLSVISEEGEASSK 60

Query: 1803 DPLKAYACSSAL-QTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSL 1627
            DPLK Y   SA  Q LE+  S++E++K      +   +     D+     E        L
Sbjct: 61   DPLKVYTFPSASPQILEDGVSELEEVKT-----AFRRVPKSFSDNQMPVAEGKFISSKGL 115

Query: 1626 QARKAPYFKXXXXXXXXXXXIFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXS 1447
            +A  A +F             FA S+ L LE++I++QL R+GALKLF  C          
Sbjct: 116  EACTASHFSLLLQNLNVLEETFATSDVLKLEKEILLQLARLGALKLFDICLSRTLKTSSF 175

Query: 1446 FDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHALSLPSKT 1267
             DLSD P   + E +ME   D+++  I+V SGKKE R+ R+ RT + A  + + SLP KT
Sbjct: 176  LDLSDIPTVPVEEGKMERKEDNNVGEIIVRSGKKEERRSRK-RTSDNAI-VSSNSLPPKT 233

Query: 1266 KRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISL 1087
              K   +P ++  KR SN RSRRL ++ NE EMS GVKV+A+LERI+ TLEK+TG V +L
Sbjct: 234  IWKGLKKPTLSSGKRASNYRSRRLTISKNEAEMSIGVKVIADLERIKETLEKETGKVATL 293

Query: 1086 SSWAKAAGVDKNVLQKQLRFGWYCRDELLRSTHPLIKYLARNYSGMGVAFEDLLQAGNMG 907
              WA+AAGV + VL + LRFGWYC+DEL+RST  L+ YLARNY G+GVA +DL+QAGN+G
Sbjct: 294  RCWAEAAGVHEKVLLQHLRFGWYCQDELIRSTRSLVLYLARNYRGLGVALDDLMQAGNLG 353

Query: 906  VLQGAERFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLY 727
            +LQGAERFDH+RGYRFSTY QYW+RKS+S LV +HARG+ IPFTLS+ INQIQKARK  Y
Sbjct: 354  LLQGAERFDHSRGYRFSTYVQYWIRKSMSRLVAQHARGVQIPFTLSKAINQIQKARKANY 413

Query: 726  KSHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESP 547
             SH KYP DE+IAK TGLSLA+I+SAS CLR+VGS+D KM +S +  ++EF PDTS++SP
Sbjct: 414  NSHMKYPDDEEIAKITGLSLARIRSASTCLRVVGSVDHKMWESSDGTYMEFTPDTSLKSP 473

Query: 546  EEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIE 367
            EE VM QHM+KDI+ LLKGL+LRE+QVL+LRYGL ++  KSLEEIGRLFHVSKEWIRKIE
Sbjct: 474  EETVMRQHMKKDIHDLLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVSKEWIRKIE 533

Query: 366  KAALTKLRDEETRTKLSHYL 307
            K AL KLR EE+   LSHYL
Sbjct: 534  KKALMKLRVEESHKYLSHYL 553


>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
            subsp. vesca]
          Length = 545

 Score =  506 bits (1303), Expect = e-140
 Identities = 288/561 (51%), Positives = 368/561 (65%), Gaps = 2/561 (0%)
 Frame = -3

Query: 1980 MGVGFRLYLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXSMS-VSVPSVISGESEILYD 1804
            MG+GFRL LK GFP+                         S + +S  SVIS E E    
Sbjct: 1    MGLGFRLNLKCGFPIHNSHWQTNSPSKLPSSSVRGREGSFSSAGLSFLSVISEECETSSK 60

Query: 1803 DPLKAYACSSAL-QTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSL 1627
            DPLK Y C SA  Q L++  S+ME+         +N        S  +  + + +F+ S 
Sbjct: 61   DPLKVYTCPSASPQLLDDGLSEMEE--------KMNPRRMSKSGSANMIDDKEYSFMSSA 112

Query: 1626 QARKAPYFKXXXXXXXXXXXIFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXS 1447
              R + Y              FADS    LE++I++QLGR+GALKLF+ C          
Sbjct: 113  GLRTSHY-TLLLQNLNVLEETFADSGVSKLEKEILLQLGRLGALKLFEICLSRTLKTSSF 171

Query: 1446 FDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHALSLPSKT 1267
             DLSD P + I + + E          +V SGKKE +K R+  + +   K  + +LP K 
Sbjct: 172  LDLSDIPTEPIEKHKTE-------RKNIVRSGKKEEQKSRKRTSYDS--KKFSGTLPVKQ 222

Query: 1266 KRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISL 1087
             R+ + +P  + V+R SN+RSRRL++A NE EMS GVKV+A+LER+++TLEK+TG V +L
Sbjct: 223  MREGFKKPNPSSVRRASNSRSRRLMMAKNEAEMSVGVKVIADLERLKVTLEKETGKVPTL 282

Query: 1086 SSWAKAAGVDKNVLQKQLRFGWYCRDELLRSTHPLIKYLARNYSGMGVAFEDLLQAGNMG 907
              WA+AAGVD+ VLQ+QL FGWYC+DEL+RST  L+ YLARNY G+GVA +DLLQAGN+G
Sbjct: 283  RCWAEAAGVDEKVLQQQLHFGWYCQDELVRSTRSLVLYLARNYRGLGVALDDLLQAGNLG 342

Query: 906  VLQGAERFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLY 727
            +LQGAERFD +RGYRFSTY QYW+RKS+S LV +HARGI IP TLS+ IN+IQKARK  Y
Sbjct: 343  LLQGAERFDPSRGYRFSTYVQYWIRKSMSRLVAQHARGIKIPNTLSKAINRIQKARKANY 402

Query: 726  KSHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESP 547
             SH KYP DE+IAK TGLSLAKI SAS+CLR+VGS+D K+ +     ++EF PD ++E+P
Sbjct: 403  NSHMKYPDDEEIAKITGLSLAKISSASRCLRVVGSVDHKIWECSAGTYMEFTPDIAVETP 462

Query: 546  EEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIE 367
            EE VM QHM+ DI+ LL+GL+ REK+VL LRYGL     KSLEEIGRLFHVSKEWIRKIE
Sbjct: 463  EESVMRQHMKNDIHVLLEGLNSREKKVLALRYGLNYCNPKSLEEIGRLFHVSKEWIRKIE 522

Query: 366  KAALTKLRDEETRTKLSHYLK 304
            K ALTKLR+EE+   LSHYLK
Sbjct: 523  KNALTKLRNEESNKNLSHYLK 543


>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum]
          Length = 555

 Score =  486 bits (1251), Expect = e-134
 Identities = 263/555 (47%), Positives = 355/555 (63%)
 Frame = -3

Query: 1974 VGFRLYLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXSMSVSVPSVISGESEILYDDPL 1795
            +GFRL+LKWGF VQ                          + S+   I+G+ E  + DP 
Sbjct: 1    MGFRLHLKWGFSVQPPFSSNSSSWPSSHSFKGREALYDP-ARSLKPFITGDCEPSHSDPF 59

Query: 1794 KAYACSSALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSLQARK 1615
            +   C S  Q   +D S   ++K + G+GS ++++   G        D       L   K
Sbjct: 60   RVQTCLSDPQLWTSDTSVTTEIKTRNGRGSPSNVYGDIGSHKIGISPDGEK-PTYLNTTK 118

Query: 1614 APYFKXXXXXXXXXXXIFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXSFDLS 1435
            + +F            +FADS    LERDI+VQL ++GAL+ F TC            + 
Sbjct: 119  SLHFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSTFPKVL 178

Query: 1434 DEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHALSLPSKTKRKR 1255
            D P +LI EV+ +D + + +  +VV S KK+ RK RR R    A+ I  +   +K  ++ 
Sbjct: 179  DVPRELIKEVEKDDLVGNAIDKVVVRSRKKQERKSRRNRASRNANDIITVQPHTKNIQED 238

Query: 1254 YGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISLSSWA 1075
              +P     KR   +R++R  +A NE EMS+GVK+VA LERIR  LE++TG V + SSWA
Sbjct: 239  LQQPKFYSGKRTQASRNKRQKIAKNEAEMSRGVKLVAQLERIRSILEEETGRVATFSSWA 298

Query: 1074 KAAGVDKNVLQKQLRFGWYCRDELLRSTHPLIKYLARNYSGMGVAFEDLLQAGNMGVLQG 895
            +AAG+++  LQ++L FGWYCRDELL+ST  L+ YLARNY G+GVAFEDL+QAGNMGVLQG
Sbjct: 299  EAAGIEQKELQQRLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQG 358

Query: 894  AERFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLYKSHG 715
            A RFDHTRGY+FSTY QYW+RKS+S LV +HARG+ IPFT+ + INQI KARK L +SHG
Sbjct: 359  AVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSRSHG 418

Query: 714  KYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESPEEVV 535
            K+PAD++IAKFTGLS A+I  ASKCLR+VGS+D+K+GD ++ K LE  PD SI SPEE V
Sbjct: 419  KFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCISAKVLELTPDKSITSPEETV 478

Query: 534  MHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIEKAAL 355
            M Q +  ++Y LL+ LD +E+QV+  R+GL  H+ KSLEEIGRL+ VSKEWIR+IE+ AL
Sbjct: 479  MRQDIVDNMYSLLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERRAL 538

Query: 354  TKLRDEETRTKLSHY 310
            TKLR+ +    ++HY
Sbjct: 539  TKLRNADYFQHITHY 553


>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
            lycopersicum]
          Length = 551

 Score =  483 bits (1242), Expect = e-133
 Identities = 265/555 (47%), Positives = 355/555 (63%)
 Frame = -3

Query: 1974 VGFRLYLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXSMSVSVPSVISGESEILYDDPL 1795
            +GFRL+LKWGF +Q                          + S+   I+G+ E  + DP 
Sbjct: 1    MGFRLHLKWGFSLQPPFSSNSSSWPSSHSFKGRETLYDP-ARSLKPFINGDCEPSHSDPF 59

Query: 1794 KAYACSSALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSLQARK 1615
            +   C S  Q   +D S   + K + G+GS ++++   G S  + GE  +     L   K
Sbjct: 60   RVQTCLSDPQLWTSDASVTTETKTRNGRGSPSNVYGDIG-SYKIDGEKPT----YLNTTK 114

Query: 1614 APYFKXXXXXXXXXXXIFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXSFDLS 1435
            + +F            +FADS    LERDI+VQL ++GAL+ F TC            + 
Sbjct: 115  SLHFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSSFPKVL 174

Query: 1434 DEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHALSLPSKTKRKR 1255
            D P +LI EV+ +D + + M  +VV S KK+ R  RR+R    A+ I  +   +K  ++ 
Sbjct: 175  DVPRELIKEVEKDDLVGNAMDKVVVRSRKKQERMSRRKRASRNANDIITVQPHTKNIQED 234

Query: 1254 YGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISLSSWA 1075
              +      KR   +R++R  +A NE EMSKGVK+VA LERIR  LE++TG V + SSWA
Sbjct: 235  LQQLKFYSGKRTHASRTKRQKIAKNEAEMSKGVKLVAQLERIRSILEEETGQVATFSSWA 294

Query: 1074 KAAGVDKNVLQKQLRFGWYCRDELLRSTHPLIKYLARNYSGMGVAFEDLLQAGNMGVLQG 895
            KAAG+++  LQ+ L FGWYCRDELL+ST  L+ YLARNY G+GVAFEDL+QAGNMGVLQG
Sbjct: 295  KAAGIEQKELQQHLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQG 354

Query: 894  AERFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLYKSHG 715
            A RFDHTRGY+FSTY QYW+RKS+S LV +HARG+ IPFT+ + INQI KARK L +SHG
Sbjct: 355  AVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSRSHG 414

Query: 714  KYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESPEEVV 535
            K+PAD++IAKFTGLS A+I  ASKCLR+VGS+D+K+GD +N K LE  PD S+ SPEE V
Sbjct: 415  KFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCINAKVLELTPDKSVTSPEEFV 474

Query: 534  MHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIEKAAL 355
            M Q +  ++Y LL+ LD +E+QV+  R+GL  H+ KSLEEIGRL+ VSKEWIR+IE+ AL
Sbjct: 475  MRQDIVDNMYALLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERRAL 534

Query: 354  TKLRDEETRTKLSHY 310
            TKLR  +    ++HY
Sbjct: 535  TKLRSADYFQHITHY 549


>gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus guttatus]
          Length = 478

 Score =  476 bits (1224), Expect = e-131
 Identities = 253/474 (53%), Positives = 333/474 (70%), Gaps = 1/474 (0%)
 Frame = -3

Query: 1719 VGKGSLNHLHNL-SGDSCFLFGEDDSAFLGSLQARKAPYFKXXXXXXXXXXXIFADSNAL 1543
            +GKGS + L++L   D      ED    L S+QA +A   +           +FADSNA+
Sbjct: 16   LGKGSSDSLYSLLDSDIQIPKNEDKLENLTSVQATQASKLRLLMKNLDVLEDMFADSNAV 75

Query: 1542 SLERDIMVQLGRIGALKLFQTCXXXXXXXXXSFDLSDEPGDLIGEVQMEDNIDDHMSNIV 1363
             LE DI+ QL R+GAL+LF +C         SFDLSD P +++ E +           + 
Sbjct: 76   RLEGDILEQLERLGALRLFHSCLSRTIKSYTSFDLSDGPTEIVEECK-----------VF 124

Query: 1362 VCSGKKEVRKFRRERTLEKADKIHALSLPSKTKRKRYGRPAVAPVKRPSNARSRRLILAI 1183
            V SGKKE+RK RR+RT +        S PSKT  K   +   A   R   +R++R   A 
Sbjct: 125  VHSGKKELRKLRRKRTSDNESPTIQES-PSKTISKDLQQLKFAIAGRTPRSRNKRQKTAR 183

Query: 1182 NEVEMSKGVKVVANLERIRLTLEKDTGHVISLSSWAKAAGVDKNVLQKQLRFGWYCRDEL 1003
            NE +MS GVK VA LE+IR  LE++TG + SLS+WA+AAG+ K  LQ+ L +GW+CRDEL
Sbjct: 184  NEADMSSGVKRVAELEKIRTKLEQETGQIASLSNWAEAAGIKKKELQQHLHYGWHCRDEL 243

Query: 1002 LRSTHPLIKYLARNYSGMGVAFEDLLQAGNMGVLQGAERFDHTRGYRFSTYAQYWVRKSI 823
            LRSTH L+ ++ARNYSG+GVAFEDL+QAGN+GVLQGAERFD +RGY+FSTY QYW+RKS+
Sbjct: 244  LRSTHSLVLFIARNYSGLGVAFEDLIQAGNIGVLQGAERFDQSRGYKFSTYVQYWIRKSM 303

Query: 822  SMLVTRHARGIHIPFTLSRRINQIQKARKVLYKSHGKYPADEDIAKFTGLSLAKIQSASK 643
            S LV +HARG+ IP TLS+ INQ+ KARK L  S+GKYP D +IAKFTGLS+AK+ SASK
Sbjct: 304  STLVAKHARGVRIPCTLSKVINQVHKARKALTTSNGKYPDDYEIAKFTGLSVAKVMSASK 363

Query: 642  CLRIVGSLDEKMGDSLNVKFLEFMPDTSIESPEEVVMHQHMRKDIYKLLKGLDLREKQVL 463
            CLR+VGS+D+K+G+ +  K++E + DTS+ SPEE V+ QHM  D+  LL GL+ REKQV+
Sbjct: 364  CLRVVGSIDQKIGEYMTTKYMEILSDTSMPSPEEAVIRQHMLNDVSTLLNGLEPREKQVI 423

Query: 462  LLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIEKAALTKLRDEETRTKLSHYLKL 301
            +LR+GLG+ +CKSLEEIGRLF VSKEWIRKIE++AL KLR+E++   L+HY+ +
Sbjct: 424  ILRFGLGNCQCKSLEEIGRLFRVSKEWIRKIERSALIKLRNEDSLKILNHYVHM 477


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score =  474 bits (1220), Expect = e-131
 Identities = 255/509 (50%), Positives = 346/509 (67%), Gaps = 1/509 (0%)
 Frame = -3

Query: 1824 ESEILYDDPLKAYACSSALQ-TLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDD 1648
            ESE L  D L+ +A SS++  T+END S +E     + K S     +L  D+  L   D 
Sbjct: 54   ESETLRKDTLRPHAGSSSVPLTVENDYSNLETT---ISKRSCK---DLISDTEVLSDRDV 107

Query: 1647 SAFLGSLQARKAPYFKXXXXXXXXXXXIFADSNALSLERDIMVQLGRIGALKLFQTCXXX 1468
            S ++ S+Q+  A +F              +DS  L LE+DI+VQLGR+GAL+LF  C   
Sbjct: 108  SVYVRSVQSCSASHFHTLMANINLLENKVSDSELLKLEKDILVQLGRLGALQLFHACLSR 167

Query: 1467 XXXXXXSFDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHA 1288
                    D+SD PG +  + +     D+ +   +V S +KE RK R+ER L+ A     
Sbjct: 168  I------IDMSDLPGLITEDGKANVRKDNELKKKLVFSKRKEERKLRQERRLQ-ASTSKR 220

Query: 1287 LSLPSKTKRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKD 1108
             +  S++  +      V+   + + AR RR I+A NE EMS+G+KVVA LE+++LTLEK+
Sbjct: 221  CACKSESSIESSIHHVVSTAAKKTKARGRRAIIAKNEAEMSRGIKVVAQLEKVKLTLEKE 280

Query: 1107 TGHVISLSSWAKAAGVDKNVLQKQLRFGWYCRDELLRSTHPLIKYLARNYSGMGVAFEDL 928
            TG  +SL+ WA+AAG+D+ VLQ  L FGWYCRDELL+S   L+ YL+R Y G+GVA EDL
Sbjct: 281  TGKAVSLNCWAEAAGIDEKVLQHDLHFGWYCRDELLKSGRSLVLYLSRYYRGLGVAHEDL 340

Query: 927  LQAGNMGVLQGAERFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQ 748
            +QAGN+G+LQGAERFDHTRGY+FSTY QYW+RK++S LV+RH RGI +P TLS  IN++Q
Sbjct: 341  MQAGNIGILQGAERFDHTRGYQFSTYVQYWIRKAMSQLVSRHGRGIKVPTTLSTTINRVQ 400

Query: 747  KARKVLYKSHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMP 568
            KARK+L +S GK+P D +++K TGLSL KI+SA  CLRIVGSLD+K+G  +N+K+LE  P
Sbjct: 401  KARKILKRSQGKHPDDVEVSKSTGLSLDKIKSADNCLRIVGSLDQKVGHFINMKYLECTP 460

Query: 567  DTSIESPEEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSK 388
            DT++E PE+ VM QHMR D++KLL+ LD +E++VL+ RYGL  H C SL E+G++F VSK
Sbjct: 461  DTALEMPEKTVMKQHMRNDVHKLLQELDPKERRVLIHRYGLEGH-CMSLHEVGKVFDVSK 519

Query: 387  EWIRKIEKAALTKLRDEETRTKLSHYLKL 301
            EWIRK+EK ALTKLR E+ +T L HYL L
Sbjct: 520  EWIRKMEKRALTKLRTEQNQTNLKHYLNL 548


>ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Glycine max]
          Length = 551

 Score =  464 bits (1194), Expect = e-128
 Identities = 258/518 (49%), Positives = 350/518 (67%), Gaps = 1/518 (0%)
 Frame = -3

Query: 1851 VSVPSVISGESEILYDDPLKAYA-CSSALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGD 1675
            +S PS    E E L  D  + +A  SSAL+TLEND+   E+ +   GK SL+ +H +  +
Sbjct: 49   LSFPSTFYEEGEALQKDFGRVFAFSSSALETLENDSLGREETQVNKGKRSLSSVHKMIDN 108

Query: 1674 SCFLFGEDDSAFLGSLQARKAPYFKXXXXXXXXXXXIFADSNALSLERDIMVQLGRIGAL 1495
            +   FGE  S      ++ +A +F+            F DS AL LE+ I++QLG++GAL
Sbjct: 109  TQMPFGEV-STVSKKFESFRAQHFRLLMENLCVLEETFVDSEALRLEKAIILQLGKLGAL 167

Query: 1494 KLFQTCXXXXXXXXXSFDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERT 1315
            +LF  C            LS   G  +      D +DD+   +VV S KK+  K RR+R 
Sbjct: 168  ELFNVC------------LSRSLGTSLVS-NYADKVDDYKDKVVVQSSKKKENKTRRKRE 214

Query: 1314 LEKADKIHALSLPSKTKRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLE 1135
                  + + SL  K  ++     + + VKR  N +++R+++A  E EMSKGVKV+A LE
Sbjct: 215  FVST-AVSSQSLTLKANQEDLLGFSASLVKRAPNTKNKRILVAKREAEMSKGVKVLAELE 273

Query: 1134 RIRLTLEKDTGHVISLSSWAKAAGVDKNVLQKQLRFGWYCRDELLRSTHPLIKYLARNYS 955
            +IR  +E+DT  V SLS+WA+A+GVD+ VLQK L  G+YC+DEL+RST  L+ YLAR Y 
Sbjct: 274  KIRTAIEEDTKRVASLSTWAEASGVDEKVLQKLLHRGYYCQDELIRSTRSLVLYLARKYR 333

Query: 954  GMGVAFEDLLQAGNMGVLQGAERFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFT 775
            GMG+A +DLLQAG +GVLQGAERFD TRGY+FSTY QYW+RKSI  +V R+ARGI IP++
Sbjct: 334  GMGIALDDLLQAGYVGVLQGAERFDSTRGYKFSTYVQYWIRKSILRVVARYARGIVIPWS 393

Query: 774  LSRRINQIQKARKVLYKSHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSL 595
            L+R INQIQKARK +  +H K P D +IAK TGLSL KI+SAS CLRIV S+D+K+GD L
Sbjct: 394  LNRAINQIQKARKAMKSTHKKCPDDYEIAKMTGLSLDKIKSASNCLRIVASIDQKVGDYL 453

Query: 594  NVKFLEFMPDTSIESPEEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEE 415
             V+++E +PD +IESPE+ VM QHMRKD++ LLKGL+LRE+++L LR+GL D++ +SL++
Sbjct: 454  GVEYMELLPDATIESPEDAVMKQHMRKDVHDLLKGLNLRERKILTLRFGLNDNQPRSLQD 513

Query: 414  IGRLFHVSKEWIRKIEKAALTKLRDEETRTKLSHYLKL 301
            IG LF VSKE IRKIEK ALTKL++E T +KL +YL L
Sbjct: 514  IGTLFKVSKERIRKIEKKALTKLKNEATISKLHYYLDL 551


>ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
            gi|449507267|ref|XP_004162982.1| PREDICTED: RNA
            polymerase sigma factor sigC-like [Cucumis sativus]
          Length = 559

 Score =  459 bits (1182), Expect = e-126
 Identities = 262/559 (46%), Positives = 351/559 (62%), Gaps = 1/559 (0%)
 Frame = -3

Query: 1980 MGVGFRLYLKWGFPVQXXXXXXXXXXXXXXXXXXXXXXXXSMSVSVPSVISGESEILYDD 1801
            MG  FR  L+WGF +Q                        S  +S  S I  E E +  +
Sbjct: 1    MGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRE 60

Query: 1800 PLKAYAC-SSALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFLGSLQ 1624
             LK Y C S A QT  ND   +E+++   G  SL  +H     +     ED+ +   SL 
Sbjct: 61   TLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSLP 120

Query: 1623 ARKAPYFKXXXXXXXXXXXIFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXXXXSF 1444
              KA  F             F +S  LSLERDI++QL ++GAL+ F TC           
Sbjct: 121  TGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFH 180

Query: 1443 DLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHALSLPSKTK 1264
            D S  P +   +  +    +D   N+ V S KK  R+  ++R ++ ADKI +  L ++  
Sbjct: 181  DSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAV 240

Query: 1263 RKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHVISLS 1084
            +++  R  V   K+ SN+  RRLI+AINE EMS GVKVVANLERIR TLEK++G + S+S
Sbjct: 241  KEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMS 300

Query: 1083 SWAKAAGVDKNVLQKQLRFGWYCRDELLRSTHPLIKYLARNYSGMGVAFEDLLQAGNMGV 904
             WA+AA VD   LQKQL+FG +CRDELLRST+ L+ +LA+ Y   G+  EDL+QAG +GV
Sbjct: 301  CWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGV 360

Query: 903  LQGAERFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARKVLYK 724
            LQG ERFD  RG+R STY QYW+RKS+S +V R++RGI IP +L++ INQIQKARKVL  
Sbjct: 361  LQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNH 420

Query: 723  SHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTSIESPE 544
            S  +Y +D+DIA+ TGL LAK++ AS CL++VGS D+KMGD +N+K++EF  D SI+SPE
Sbjct: 421  SGRRY-SDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPE 479

Query: 543  EVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWIRKIEK 364
            E V  + M+KDI+ +L+ L+ RE+QVL+LRYGL D   KSLEEIG+L H+SKEW+RKIEK
Sbjct: 480  ETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEK 539

Query: 363  AALTKLRDEETRTKLSHYL 307
             A+TKL++EET   LSHYL
Sbjct: 540  KAMTKLKNEETVKHLSHYL 558


>ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cicer arietinum]
          Length = 545

 Score =  452 bits (1164), Expect = e-124
 Identities = 248/518 (47%), Positives = 344/518 (66%), Gaps = 1/518 (0%)
 Frame = -3

Query: 1851 VSVPSVISGESEILYDDPLKAYA-CSSALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGD 1675
            +S+ S +  E E L  D  K +A  SSAL+  E D  + E  K   GK SL+ +H +  +
Sbjct: 44   LSLLSTVYEEGETLQKDFGKTFAFSSSALEVPEMDLLQGEVTKVNKGKRSLSSVHEIIDN 103

Query: 1674 SCFLFGEDDSAFLGSLQARKAPYFKXXXXXXXXXXXIFADSNALSLERDIMVQLGRIGAL 1495
            +   FGE              P+F             FADS A+ LE+DI+++L ++GAL
Sbjct: 104  TQLPFGE--------------PHFGLLMENLGILEETFADSEAMRLEKDIVLKLEKLGAL 149

Query: 1494 KLFQTCXXXXXXXXXSFDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERT 1315
            +LF  C           + +D   + + E +    +D++   +VV S +KE R  R++ +
Sbjct: 150  ELFNVCLTRSFGTSTESNCTDVVLEHVKEKKRNFKVDNYTGKVVVQSKRKENRTRRKQAS 209

Query: 1314 LEKADKIHALSLPSKTKRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLE 1135
            +       +L L    +      PA + VKR SN  +RR ++A  EVEMSKGVKV+A LE
Sbjct: 210  VAITTSFQSLPLEDNNQEGPLRLPA-SLVKRVSNTNNRRAVIAQREVEMSKGVKVLAELE 268

Query: 1134 RIRLTLEKDTGHVISLSSWAKAAGVDKNVLQKQLRFGWYCRDELLRSTHPLIKYLARNYS 955
            +++  +E+DT   +SLSSWA+A+GVD+NVLQ+QL  G+YCRDEL+RST  L+ Y AR Y 
Sbjct: 269  KMKTAIEEDTKQAVSLSSWAEASGVDENVLQRQLYHGYYCRDELIRSTRSLVLYFARKYR 328

Query: 954  GMGVAFEDLLQAGNMGVLQGAERFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFT 775
            GMG+A EDLLQ G +GVLQGAERFD TRGYRFSTY QYW+RKS+S +V R+ARGI IP++
Sbjct: 329  GMGIALEDLLQVGYIGVLQGAERFDSTRGYRFSTYVQYWIRKSMSRMVARYARGITIPWS 388

Query: 774  LSRRINQIQKARKVLYKSHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSL 595
            +++ I+QIQKARK+L  +  KYP D +IAK TGLSL +I+SAS C+RIV S+++KMGD  
Sbjct: 389  MNKAISQIQKARKLLKSTSMKYPDDHEIAKMTGLSLDRIRSASHCMRIVSSMNQKMGDR- 447

Query: 594  NVKFLEFMPDTSIESPEEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEE 415
             ++++ +M D SIESPEE VM QH+RKDI+ +L+ LD RE+Q+L+LR+GL DH+ KSLE 
Sbjct: 448  GIEYMGYMADMSIESPEETVMKQHIRKDIHDILQSLDSRERQILILRFGLNDHQPKSLEY 507

Query: 414  IGRLFHVSKEWIRKIEKAALTKLRDEETRTKLSHYLKL 301
            IG+++ VSKEWIRKIEK ALTKLR+E   +KL++YL L
Sbjct: 508  IGKIYKVSKEWIRKIEKKALTKLRNEANTSKLNYYLDL 545


>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297323785|gb|EFH54206.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 568

 Score =  439 bits (1129), Expect = e-120
 Identities = 248/513 (48%), Positives = 332/513 (64%), Gaps = 2/513 (0%)
 Frame = -3

Query: 1839 SVISGESEILYDDPLKAYACSSALQTLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLF 1660
            S +  ES I   DPLKA A SSA  T EN   +++D K  +G GS               
Sbjct: 89   SSVKEESRIYQKDPLKACA-SSAPYTAENVFLELKDPKENIGVGSAEK------------ 135

Query: 1659 GEDDSAFLGSLQARKAPYFKXXXXXXXXXXXIFADSNALSLERDIMVQLGRIGALKLFQT 1480
                     S  +R    +             F   ++  +ERDIM+Q+G++GA  LF+T
Sbjct: 136  ---------SCSSRSMLQYNLLAKNLLALEETFVALDSARMERDIMLQMGKLGAADLFKT 186

Query: 1479 CXXXXXXXXXSFDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRER-TLEKA 1303
            C         +  LSD   +L+G    +         + V S +K  +K RR   T E  
Sbjct: 187  CLSRSRGSSVASCLSDTT-ELVGTTPNQQ--------VFVSSRRKLKKKARRSTVTAENG 237

Query: 1302 DKIHALSLPSKTKRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRL 1123
            D+    SLP    R  +    V  V+RP   R +R  ++ NE EMS GVK+VA++ERIR 
Sbjct: 238  DQG---SLPMGL-RTTWNNIDVPRVRRPPKYRKKRERISKNEAEMSTGVKIVADMERIRT 293

Query: 1122 TLEKDTGHVISLSSWAKAAGVDKNVLQKQLRFGWYCRDELLRSTHPLIKYLARNYSGMGV 943
             LE+++G V SLS WA+AAG+++ +L + L +GWYCRDELL+ST  L+ +LARNY G+G+
Sbjct: 294  QLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCRDELLKSTRSLVLFLARNYRGLGI 353

Query: 942  AFEDLLQAGNMGVLQGAERFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRR 763
            A EDL+QAG +GVLQGAERFDHTRGY+FSTY QYW+RKS+SM+V+RHARG+HIP ++ R 
Sbjct: 354  AHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSMMVSRHARGVHIPSSIIRT 413

Query: 762  INQIQKARKVLYKSHG-KYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVK 586
            INQIQKARK L  SHG KYPADEDI+K T LS+ KI++A++CL++VGS+++K+GD  + K
Sbjct: 414  INQIQKARKTLKTSHGIKYPADEDISKLTSLSVKKIRAANQCLKVVGSIEKKVGDCFSTK 473

Query: 585  FLEFMPDTSIESPEEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGR 406
            FLEF PDT++ESPEE VM Q  R+DI+ LL+GL+ REKQV++LRYGL ++R KSLEEIG+
Sbjct: 474  FLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQNYRPKSLEEIGK 533

Query: 405  LFHVSKEWIRKIEKAALTKLRDEETRTKLSHYL 307
            L  VSKEWIRKIE+ A+ KLRD+     L +YL
Sbjct: 534  LLRVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 566


>ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Capsella rubella]
            gi|482559522|gb|EOA23713.1| hypothetical protein
            CARUB_v10016920mg [Capsella rubella]
          Length = 581

 Score =  436 bits (1121), Expect = e-119
 Identities = 239/506 (47%), Positives = 332/506 (65%), Gaps = 3/506 (0%)
 Frame = -3

Query: 1809 YDDPLKAYACSSALQ--TLENDNSKMEDMKFKVGKGSLNHLHNLSGDSCFLFGEDDSAFL 1636
            ++DP KA AC+SA    T  N   +++D K  +G G +              GE  S+  
Sbjct: 102  HNDPFKACACASATPYTTPNNVYVELKDPKENIGVGFV--------------GEQMSSAE 147

Query: 1635 GSLQARKAPYFKXXXXXXXXXXXIFADSNALSLERDIMVQLGRIGALKLFQTCXXXXXXX 1456
             S  +R    +             F+  ++L +ERDIM Q+G++GA + F+TC       
Sbjct: 148  KSYSSRSMLQYNLLAKNLIALEETFSALDSLGMERDIMFQMGKLGATEFFKTCLSRSRGS 207

Query: 1455 XXSFDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEKADKIHALSLP 1276
              +  LS E  DL+G    +          V  S +++++K +  R+    +     SLP
Sbjct: 208  SITSCLS-ETTDLVGTTPKQQ---------VFVSSRRKLKK-KASRSSVTGENGDQGSLP 256

Query: 1275 SKTKRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIRLTLEKDTGHV 1096
             +  R  +    V  V+RP   R +R  ++ NE EMS GVK+VA++ERIR  LE+++G V
Sbjct: 257  IEL-RTTWNNIDVPRVRRPPKYRKKRERISRNEAEMSTGVKIVADMERIRTQLEEESGKV 315

Query: 1095 ISLSSWAKAAGVDKNVLQKQLRFGWYCRDELLRSTHPLIKYLARNYSGMGVAFEDLLQAG 916
             SLS WA+AAG+++ +L + L +GWYCRDELL+ST  L+ +LARNY G+G+A EDL+QAG
Sbjct: 316  ASLSCWAEAAGMNEKLLMRNLHYGWYCRDELLKSTRSLVLFLARNYRGLGIAHEDLIQAG 375

Query: 915  NMGVLQGAERFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSRRINQIQKARK 736
             +GVLQGAERFDH RGY+FSTY QYW+RKS+SM+V+RHARG+HIP ++ R INQIQKARK
Sbjct: 376  FVGVLQGAERFDHARGYKFSTYVQYWIRKSMSMMVSRHARGVHIPSSIIRTINQIQKARK 435

Query: 735  VLYKSHG-KYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNVKFLEFMPDTS 559
             L  SHG KYPADE+I+K T LS+ KI++A++CL++VGS++ K+GD  + KFLEF PDT 
Sbjct: 436  TLKTSHGIKYPADEEISKLTSLSVKKIRAANQCLKVVGSIENKVGDCFSTKFLEFTPDTM 495

Query: 558  IESPEEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIGRLFHVSKEWI 379
            +ESPEE VM Q  R+D++ LL+GL+ REKQV++LRYGL D+R KSLEEIG+L  VSKEWI
Sbjct: 496  MESPEEAVMRQSARRDLHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLRVSKEWI 555

Query: 378  RKIEKAALTKLRDEETRTKLSHYLKL 301
            R+IE+ A+ KLRD+     L +YLKL
Sbjct: 556  RRIERRAMAKLRDQPNAEDLRYYLKL 581


>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 571

 Score =  431 bits (1108), Expect = e-118
 Identities = 241/514 (46%), Positives = 326/514 (63%), Gaps = 3/514 (0%)
 Frame = -3

Query: 1839 SVISGESEILYDDPLKAYACSSALQTLENDNSKME--DMKFKVGKGSLNHLHNLSGDSCF 1666
            S +  ES I  +D LKA  C+S       +N  +E  D K  +G GS             
Sbjct: 89   SSVKEESRIYQNDSLKACGCASVSPYTAQNNVYVELKDPKENIGVGSAER---------- 138

Query: 1665 LFGEDDSAFLGSLQARKAPYFKXXXXXXXXXXXIFADSNALSLERDIMVQLGRIGALKLF 1486
                       S  +R    +             F   +++ +ERDIM+Q+G++GA +LF
Sbjct: 139  -----------SYSSRSMLQYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELF 187

Query: 1485 QTCXXXXXXXXXSFDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERTLEK 1306
            +TC         +  LSD            + +D   +  V  S +++V+K  R R+   
Sbjct: 188  KTCLSRYRGSSITSCLSDTT----------ELVDTTPNQQVFVSSRRKVKKKAR-RSSVT 236

Query: 1305 ADKIHALSLPSKTKRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLERIR 1126
            A+     SLP    R  +    V  V+RP   R +R  ++ NE EMS GVK+VA++ERIR
Sbjct: 237  AENGDQSSLPIGL-RTTWNNIDVPRVRRPPKYRKKRERISRNETEMSTGVKIVADMERIR 295

Query: 1125 LTLEKDTGHVISLSSWAKAAGVDKNVLQKQLRFGWYCRDELLRSTHPLIKYLARNYSGMG 946
              LE+++G V SLS WA AAG+++ +L + L +GWYCRDEL++ST  L+ +LARNY GMG
Sbjct: 296  TQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGMG 355

Query: 945  VAFEDLLQAGNMGVLQGAERFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFTLSR 766
            +A EDL+QAG +GVLQGAERFDHTRGY+FSTY QYW+RKS+S +V+RHARG+HIP ++ R
Sbjct: 356  IAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIR 415

Query: 765  RINQIQKARKVLYKSHG-KYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSLNV 589
             IN IQKARK L  SHG KY ADE+IAK TG S+ KI++A++CL++VGS+D+K+GD    
Sbjct: 416  TINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTT 475

Query: 588  KFLEFMPDTSIESPEEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLGDHRCKSLEEIG 409
            KFLEF PDT++ESPEE VM Q  R+DI+ LL+GL+ REKQV++LRYGL D+R KSLEEIG
Sbjct: 476  KFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIG 535

Query: 408  RLFHVSKEWIRKIEKAALTKLRDEETRTKLSHYL 307
            +LF VSKEWIRKIE+ A+ KLRD+     L +YL
Sbjct: 536  KLFKVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569


>ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
            gi|355477497|gb|AES58700.1| RNA polymerase sigma-B factor
            [Medicago truncatula]
          Length = 549

 Score =  428 bits (1101), Expect = e-117
 Identities = 240/519 (46%), Positives = 335/519 (64%), Gaps = 2/519 (0%)
 Frame = -3

Query: 1851 VSVPSVISGESEILYDDPLKAYACSSALQTLENDNSKMEDM-KFKVGKGSLNHLHNLSGD 1675
            +S+ S +  E E L  D  K +A SSAL+  E D  +  ++ K   GK SL+ +H +  +
Sbjct: 52   LSLLSTVYEEGETLQKDFRKTFAFSSALEAPEKDLLQGGELTKVNKGKRSLSSVHEMIDN 111

Query: 1674 SCFLFGEDDSAFLGSLQARKAPYFKXXXXXXXXXXXIFADSNALSLERDIMVQLGRIGAL 1495
            S   F E               +F             FADS AL LE++I++QL ++GAL
Sbjct: 112  SHLPFEES--------------HFGLLMENLGVLEETFADSEALRLEKNIILQLEKLGAL 157

Query: 1494 KLFQTCXXXXXXXXXSFDLSDEPGDLIGEVQMEDNIDDHMSNIVVCSGKKEVRKFRRERT 1315
            +LF  C           + + +  + + E +    +DD+   ++V S K++  + R+  +
Sbjct: 158  ELFNVCLTTSFGTSCISNCTHKVLEQVEENKRNHKVDDYTGKVIVHSSKRKENRRRKRGS 217

Query: 1314 LEKADKIHALSLPSKTKRKRYGRPAVAPVKRPSNARSRRLILAINEVEMSKGVKVVANLE 1135
            +  A    +L L    +      PA + VKR SN +++R ++A  EVEMSKGVKV+A LE
Sbjct: 218  VSIAPSSRSLPLDDNQEDPLRSSPA-SFVKRASNTKNKRAVIAQREVEMSKGVKVLAELE 276

Query: 1134 RIRLTLEKDTGHVISLSSWAKAAGVDKNVLQKQLRFGWYCRDELLRSTHPLIKYLARNYS 955
            +IR  +E+DT  V+SLSSWA+ +GVD+ VLQ+QL  G+YCRDEL+RST  L+ Y AR Y 
Sbjct: 277  KIRTAIEEDTKQVVSLSSWAETSGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYR 336

Query: 954  GMGVAFEDLLQAGNMGVLQGAERFDHTRGYRFSTYAQYWVRKSISMLVTRHARGIHIPFT 775
            GMG+A EDLLQ G +GVLQGAERFD T+GYRFSTY QYW+RKS+S +V ++ARGI +P++
Sbjct: 337  GMGIALEDLLQVGYIGVLQGAERFDSTKGYRFSTYVQYWIRKSMSRMVAKYARGITVPWS 396

Query: 774  LSRRINQIQKARKVLYKSHGKYPADEDIAKFTGLSLAKIQSASKCLRIVGSLDEKMGDSL 595
            +++ I+QIQKARKVL  +  KYP D +IAK TGLSL KI SAS CLR V S+        
Sbjct: 397  MNKAISQIQKARKVLKNTTMKYPNDLEIAKMTGLSLDKIMSASHCLRTVSSMYR------ 450

Query: 594  NVKFLEFMPDTSIESPEEVVMHQHMRKDIYKLLKGLDLREKQVLLLRYGLG-DHRCKSLE 418
             ++++  MPD SIESPEE VM QH++KDI+ +L+ LD RE+Q+++LR+GL  DH+ KSLE
Sbjct: 451  GIEYMGHMPDLSIESPEETVMKQHIKKDIHDILQSLDSRERQIIILRFGLNDDHQPKSLE 510

Query: 417  EIGRLFHVSKEWIRKIEKAALTKLRDEETRTKLSHYLKL 301
             IG++F VSKEWIRKIEK ALTKLR+E   +KL++YL L
Sbjct: 511  YIGKIFKVSKEWIRKIEKKALTKLRNETNISKLNYYLDL 549