BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00019450
         (1634 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-lik...   532   e-148
ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-lik...   522   e-145
ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-lik...   522   e-145
emb|CBI33811.3| unnamed protein product [Vitis vinifera]              520   e-145
ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus ...   518   e-144
ref|XP_007014568.1| Pseudouridine synthase isoform 2 [Theobroma ...   509   e-141
ref|XP_006474334.1| PREDICTED: uncharacterized protein LOC102622...   504   e-140
ref|XP_006453182.1| hypothetical protein CICLE_v10008288mg [Citr...   504   e-140
ref|XP_007014567.1| Pseudouridine synthase isoform 1 [Theobroma ...   502   e-139
ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Popu...   499   e-138
ref|XP_006372225.1| tRNA pseudouridine synthase family protein [...   493   e-137
gb|EXC12817.1| tRNA pseudouridine synthase A [Morus notabilis]        493   e-136
ref|XP_007160215.1| hypothetical protein PHAVU_002G302500g [Phas...   481   e-133
ref|XP_004242889.1| PREDICTED: tRNA pseudouridine synthase A-lik...   474   e-131
ref|XP_003532450.2| PREDICTED: tRNA pseudouridine synthase A, mi...   473   e-130
ref|XP_006344572.1| PREDICTED: uncharacterized protein LOC102592...   466   e-128
gb|EYU25758.1| hypothetical protein MIMGU_mgv1a006671mg [Mimulus...   464   e-128
ref|XP_007222727.1| hypothetical protein PRUPE_ppa006478mg [Prun...   464   e-128
ref|XP_004503558.1| PREDICTED: tRNA pseudouridine synthase A-lik...   457   e-126
ref|XP_003630601.1| tRNA pseudouridine synthase A [Medicago trun...   448   e-123

>ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-like [Vitis vinifera]
          Length = 433

 Score =  532 bits (1370), Expect = e-148
 Identities = 273/428 (63%), Positives = 318/428 (74%)
 Frame = -3

Query: 1440 IRASLMENQTPKKVYFHYNHTDTCKYPRWTARESYQFMYARPWQQVLDFYSNVVNGRLSL 1261
            I   LMEN+   KVY HY HT   K+ RWTARES+QFMY RPWQQVLDFYSNVV GR SL
Sbjct: 9    IGRDLMENEKENKVYVHYTHTHPTKFSRWTARESHQFMYKRPWQQVLDFYSNVVTGRCSL 68

Query: 1260 SGLFVTETCLIHEDAEVLEASSKTEQVSGLVDNKTGRWARVTYKIILSYHGDSFDGWQRQ 1081
             GL   ET  IH D E++EAS KTE  + L  ++ GRWAR+T+KI+LSYHG SFDGWQ+Q
Sbjct: 69   LGLLGIETHPIH-DGEIVEASDKTEFGNVLTKDRGGRWARLTFKIVLSYHGASFDGWQKQ 127

Query: 1080 PGLNTVQGLVERSLGRFVDEKKAKLLRDKCLPVEGCATVAGRTDKGVTALQQVCSFYTWR 901
            PGLNTVQGLVE SLGRFVDE+KA+ L++K LPVEG  TVAGRTDKGVTALQQVCSFYTW+
Sbjct: 128  PGLNTVQGLVEASLGRFVDERKAQQLKEKNLPVEGMVTVAGRTDKGVTALQQVCSFYTWK 187

Query: 900  NDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPLNDGEEGEQRSE 721
             DVK QDIED+IN AAPG LRV+SV++VSR FHPNFSAKWRHYFYIFPLNDG++GEQ SE
Sbjct: 188  KDVKVQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLNDGDDGEQISE 247

Query: 720  SELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVNKLL 541
            +E+D++     + +  + +  P  Y+                 S  KP +FS+ RV++LL
Sbjct: 248  NEMDIQKISFNEKYGEQGSECPAQYNGGENTENLIFDDDGEFESRKKPSTFSISRVDQLL 307

Query: 540  RQLEGKLLSYKMFARDTKASKNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCVELV 361
            RQLEGKLLSYK+FARDTKAS+N GPPTECF++HARA EARL  S  D GEG KVMC+ELV
Sbjct: 308  RQLEGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQFS--DDGEGTKVMCIELV 365

Query: 360  GNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGYAEF 181
             NRFLRKMVRVLVATSIR         ALLKLMD            P+GLCL+DVG+ EF
Sbjct: 366  ANRFLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLIDVGFTEF 425

Query: 180  DSKNCLIR 157
            D + C IR
Sbjct: 426  DPQICFIR 433


>ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 444

 Score =  522 bits (1345), Expect = e-145
 Identities = 275/444 (61%), Positives = 315/444 (70%), Gaps = 4/444 (0%)
 Frame = -3

Query: 1479 MITFPRVKLVSEHIRAS----LMENQTPKKVYFHYNHTDTCKYPRWTARESYQFMYARPW 1312
            MI  PR +LVS          LMEN+  +K Y HYNHTD C+  RWTARESYQFMY RPW
Sbjct: 1    MIPNPRARLVSPSSAGFGLKILMENRAQRKDYLHYNHTDRCRSARWTARESYQFMYGRPW 60

Query: 1311 QQVLDFYSNVVNGRLSLSGLFVTETCLIHEDAEVLEASSKTEQVSGLVDNKTGRWARVTY 1132
            Q+VLDFYS+ VNGR SLS L  TE C  H+DAE     +  E     V +KTGRWAR T+
Sbjct: 61   QEVLDFYSHAVNGRFSLSSLLGTEICRDHDDAETPLIYNSAELNRAAVKDKTGRWARATF 120

Query: 1131 KIILSYHGDSFDGWQRQPGLNTVQGLVERSLGRFVDEKKAKLLRDKCLPVEGCATVAGRT 952
            KI+LSY G+SFDGWQ+QPGLNTVQGLVERSLG+FVDEKKA++L+DKCLP+EGCA VAGRT
Sbjct: 121  KIVLSYDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRT 180

Query: 951  DKGVTALQQVCSFYTWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHY 772
            DKGVTAL+QVCSFYTWR DVK QDIEDSIN+AAPG LR  SV+QVSR FHPNFSAKWR Y
Sbjct: 181  DKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRY 240

Query: 771  FYIFPLNDGEEGEQRSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXX 592
             YI PLNDGE  E  S +  +VE+        +E +   K  D                 
Sbjct: 241  LYILPLNDGENMEPDSTTWENVENREEENFVKIEASNGEKCVDGIHDNLVLSPNDEELVS 300

Query: 591  SGVKPRSFSVLRVNKLLRQLEGKLLSYKMFARDTKASKNEGPPTECFIYHARAAEARLPS 412
            +  KP++FS+ RVN+LLR+LEGKLLSYKMFARDTKAS+NEGPPTECF+YHARAAE RLP 
Sbjct: 301  AD-KPQTFSITRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLP- 358

Query: 411  SVKDSGEGRKVMCVELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXX 232
               + G GR VMCVELV NRFLRKMVRVLVAT+IR         ALL+LMD         
Sbjct: 359  -CLEQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAP 417

Query: 231  XXXPEGLCLVDVGYAEFDSKNCLI 160
               P+GL LVDVGY +FDS+ C I
Sbjct: 418  PAPPDGLSLVDVGYTDFDSQICFI 441


>ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 444

 Score =  522 bits (1345), Expect = e-145
 Identities = 275/444 (61%), Positives = 315/444 (70%), Gaps = 4/444 (0%)
 Frame = -3

Query: 1479 MITFPRVKLVSEHIRAS----LMENQTPKKVYFHYNHTDTCKYPRWTARESYQFMYARPW 1312
            MI  PR +LVS          LMEN+  +K Y HYNHTD C+  RWTARESYQFMY RPW
Sbjct: 1    MIPNPRARLVSPSSAGFGLKILMENRAQRKDYLHYNHTDRCRSARWTARESYQFMYGRPW 60

Query: 1311 QQVLDFYSNVVNGRLSLSGLFVTETCLIHEDAEVLEASSKTEQVSGLVDNKTGRWARVTY 1132
            Q+VLDFYS+ VNGR SLS L  TE C  H+DAE     +  E     V +KTGRWAR T+
Sbjct: 61   QEVLDFYSHAVNGRFSLSSLLGTEICRDHDDAETPLIYNSAELNRAAVKDKTGRWARATF 120

Query: 1131 KIILSYHGDSFDGWQRQPGLNTVQGLVERSLGRFVDEKKAKLLRDKCLPVEGCATVAGRT 952
            KI+LSY G+SFDGWQ+QPGLNTVQGLVERSLG+FVDEKKA++L+DKCLP+EGCA VAGRT
Sbjct: 121  KIVLSYDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRT 180

Query: 951  DKGVTALQQVCSFYTWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHY 772
            DKGVTAL+QVCSFYTWR DVK QDIEDSIN+AAPG LR  SV+QVSR FHPNFSAKWR Y
Sbjct: 181  DKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRY 240

Query: 771  FYIFPLNDGEEGEQRSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXX 592
             YI PLNDGE  E  S +  +VE+        +E +   K  D                 
Sbjct: 241  LYILPLNDGENMEPDSTTWENVENREEENFVKIEASNGEKCVDGIHDNLVLSPNDQELVS 300

Query: 591  SGVKPRSFSVLRVNKLLRQLEGKLLSYKMFARDTKASKNEGPPTECFIYHARAAEARLPS 412
            +  KP++FS+ RVN+LLR+LEGKLLSYKMFARDTKAS+NEGPPTECF+YHARAAE RLP 
Sbjct: 301  AD-KPQTFSITRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLP- 358

Query: 411  SVKDSGEGRKVMCVELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXX 232
               + G GR VMCVELV NRFLRKMVRVLVAT+IR         ALL+LMD         
Sbjct: 359  -CLEQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAP 417

Query: 231  XXXPEGLCLVDVGYAEFDSKNCLI 160
               P+GL LVDVGY +FDS+ C I
Sbjct: 418  PAPPDGLSLVDVGYTDFDSQICFI 441


>emb|CBI33811.3| unnamed protein product [Vitis vinifera]
          Length = 402

 Score =  520 bits (1340), Expect = e-145
 Identities = 272/428 (63%), Positives = 313/428 (73%)
 Frame = -3

Query: 1440 IRASLMENQTPKKVYFHYNHTDTCKYPRWTARESYQFMYARPWQQVLDFYSNVVNGRLSL 1261
            I   LMEN+   KVY HY HT   K+ RWTARES+QFMY RPWQQVLDFYSNVV GR SL
Sbjct: 9    IGRDLMENEKENKVYVHYTHTHPTKFSRWTARESHQFMYKRPWQQVLDFYSNVVTGRCSL 68

Query: 1260 SGLFVTETCLIHEDAEVLEASSKTEQVSGLVDNKTGRWARVTYKIILSYHGDSFDGWQRQ 1081
             GL   ET  IH D E++EAS KTE  + L  ++ GRWAR+T+KI+LSYHG SFDGWQ+Q
Sbjct: 69   LGLLGIETHPIH-DGEIVEASDKTEFGNVLTKDRGGRWARLTFKIVLSYHGASFDGWQKQ 127

Query: 1080 PGLNTVQGLVERSLGRFVDEKKAKLLRDKCLPVEGCATVAGRTDKGVTALQQVCSFYTWR 901
            PGLNTVQGLVE SLGRFVDE+KA+ L++K LPVEG  TVAGRTDKGVTALQQVCSFYTW+
Sbjct: 128  PGLNTVQGLVEASLGRFVDERKAQQLKEKNLPVEGMVTVAGRTDKGVTALQQVCSFYTWK 187

Query: 900  NDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPLNDGEEGEQRSE 721
             DVK QDIED+IN AAPG LRV+SV++VSR FHPNFSAKWRHYFYIFPLNDG++GEQ SE
Sbjct: 188  KDVKVQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLNDGDDGEQISE 247

Query: 720  SELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVNKLL 541
            +E+D++            N + K                       KP +FS+ RV++LL
Sbjct: 248  NEMDIQKISF--------NENRK-----------------------KPSTFSISRVDQLL 276

Query: 540  RQLEGKLLSYKMFARDTKASKNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCVELV 361
            RQLEGKLLSYK+FARDTKAS+N GPPTECF++HARA EARL  S  D GEG KVMC+ELV
Sbjct: 277  RQLEGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQFS--DDGEGTKVMCIELV 334

Query: 360  GNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGYAEF 181
             NRFLRKMVRVLVATSIR         ALLKLMD            P+GLCL+DVG+ EF
Sbjct: 335  ANRFLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLIDVGFTEF 394

Query: 180  DSKNCLIR 157
            D + C IR
Sbjct: 395  DPQICFIR 402


>ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223536579|gb|EEF38224.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 443

 Score =  518 bits (1335), Expect = e-144
 Identities = 264/426 (61%), Positives = 318/426 (74%), Gaps = 5/426 (1%)
 Frame = -3

Query: 1422 ENQTPKKVYFHYNHTDTCKYPRWTARESYQFMYARPWQQVLDFYSNVVNGRLSLSGLFVT 1243
            E +T  K+YFHYNHTD+CK  RWTARES+QFMYARPWQ+V DFYSNVVNGRLS   LF +
Sbjct: 26   ETKTQNKIYFHYNHTDSCKSFRWTARESFQFMYARPWQEVSDFYSNVVNGRLSFLELFRS 85

Query: 1242 ETCLIHEDAEVLEASSKTEQVSGLVDNKTGRWARVTYKIILSYHGDSFDGWQRQPGLNTV 1063
            +   + +DA++ E S+KTE      +++ GRWARV +KI LSYHG SFDGWQ+QPGLNTV
Sbjct: 86   QMHFVRDDAKIQEDSNKTELEHFSNEDRFGRWARVNFKIDLSYHGGSFDGWQKQPGLNTV 145

Query: 1062 QGLVERSLGRFVDEKKAKLLRDKCLPVEGCATVAGRTDKGVTALQQVCSFYTWRNDVKTQ 883
            QGLVE+SLG+FVDEKKA+ L++ C P+EGCA VAGRTDKGV+AL+QVCSFYTWR DV+  
Sbjct: 146  QGLVEKSLGKFVDEKKAQQLKEACKPLEGCAVVAGRTDKGVSALRQVCSFYTWRKDVRPH 205

Query: 882  DIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPLNDGEEGEQRSESELDVE 703
            +IED+IN++APG +RV+SV++VSR FHPNFSAKWR Y YIFP+NDGE+ EQ  +SE D+E
Sbjct: 206  EIEDAINSSAPGKIRVISVSEVSRVFHPNFSAKWRRYLYIFPINDGEDSEQSFDSE-DLE 264

Query: 702  STGMAKIHDMERNG-----SPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVNKLLR 538
            +    + +D +RNG     S +H +                    KPR FS+ RVN+LL+
Sbjct: 265  NLRSYEKYDEQRNGCAELTSEEHVE------ELITSDKDELEGAKKPRIFSICRVNQLLQ 318

Query: 537  QLEGKLLSYKMFARDTKASKNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCVELVG 358
            QLEGKLLSYK+FARDTKAS+N GPPTECFIYHARA EARLP    D GEGRKVMCVELV 
Sbjct: 319  QLEGKLLSYKIFARDTKASRNVGPPTECFIYHARATEARLP--CPDHGEGRKVMCVELVA 376

Query: 357  NRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGYAEFD 178
            NRFLRKMVRVLVATSIR         ALLKLMD            P+GLCL DVGY EFD
Sbjct: 377  NRFLRKMVRVLVATSIREAAAGAEDDALLKLMDASCRRASAPPAPPDGLCLFDVGYTEFD 436

Query: 177  SKNCLI 160
            ++ C++
Sbjct: 437  AQICIV 442


>ref|XP_007014568.1| Pseudouridine synthase isoform 2 [Theobroma cacao]
            gi|508784931|gb|EOY32187.1| Pseudouridine synthase
            isoform 2 [Theobroma cacao]
          Length = 446

 Score =  509 bits (1310), Expect = e-141
 Identities = 263/427 (61%), Positives = 318/427 (74%)
 Frame = -3

Query: 1440 IRASLMENQTPKKVYFHYNHTDTCKYPRWTARESYQFMYARPWQQVLDFYSNVVNGRLSL 1261
            I +S+MEN+   KVY HYNH+D+C   RWTARESY+FMY R WQ V+DFYSNVVNGRL+L
Sbjct: 28   IISSVMENEAENKVYVHYNHSDSCSSARWTARESYRFMYDRAWQDVIDFYSNVVNGRLTL 87

Query: 1260 SGLFVTETCLIHEDAEVLEASSKTEQVSGLVDNKTGRWARVTYKIILSYHGDSFDGWQRQ 1081
            S LF TET  IH+D+E +E S +  +       ++GRW RVT+KII+SY+G +FDGWQ+Q
Sbjct: 88   STLFGTETS-IHDDSETVEVSDEKGE-------RSGRWERVTFKIIISYNGGAFDGWQKQ 139

Query: 1080 PGLNTVQGLVERSLGRFVDEKKAKLLRDKCLPVEGCATVAGRTDKGVTALQQVCSFYTWR 901
            PGLNTVQ +VERSLGRFVDEKKA+LL++K  P+EGCA VAGRTDKGV+A++QVCSFYTWR
Sbjct: 140  PGLNTVQEIVERSLGRFVDEKKAQLLKEKSKPLEGCAVVAGRTDKGVSAIRQVCSFYTWR 199

Query: 900  NDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPLNDGEEGEQRSE 721
             DVK  DIED+IN+ APG LRV+SV++VSR FHPNFSAKWRHY YIFPL++ E  +Q  E
Sbjct: 200  KDVKPWDIEDAINSVAPGKLRVVSVSEVSRVFHPNFSAKWRHYLYIFPLSNQEIEKQSCE 259

Query: 720  SELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVNKLL 541
            ++ +VE+      ++ +RNG  ++                   +  KP  FSV RVN+LL
Sbjct: 260  NKKEVENFISDGNYNEQRNGYLENIRWENVENLIISDNMGLEAAN-KPTRFSVCRVNQLL 318

Query: 540  RQLEGKLLSYKMFARDTKASKNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCVELV 361
            +QLE KLLSYKMFARDTKAS+N GPPTECF+YHARAAEAR+P SV D GEGR+VMCVELV
Sbjct: 319  QQLERKLLSYKMFARDTKASRNIGPPTECFMYHARAAEARIPCSVNDHGEGREVMCVELV 378

Query: 360  GNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGYAEF 181
             NRFLRKMVRVLVATSIR         ALLKLM             P+GLCLVDVGY EF
Sbjct: 379  ANRFLRKMVRVLVATSIREAAAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVGYTEF 438

Query: 180  DSKNCLI 160
            D +NCL+
Sbjct: 439  DPQNCLL 445


>ref|XP_006474334.1| PREDICTED: uncharacterized protein LOC102622951 [Citrus sinensis]
          Length = 454

 Score =  504 bits (1298), Expect = e-140
 Identities = 261/428 (60%), Positives = 309/428 (72%), Gaps = 7/428 (1%)
 Frame = -3

Query: 1422 ENQTPKKVYFHYNHTDTCKYPRWTARESYQFMYARPWQQVLDFYSNVVNGRLSLSGLFVT 1243
            +++  KKVY HYNHTD+CK+ RWTA+ESY+FM ARPWQ V+DFYS++V+GRL+LS LF T
Sbjct: 37   QSRAEKKVYVHYNHTDSCKFARWTAKESYEFMRARPWQDVVDFYSDIVSGRLTLSDLFGT 96

Query: 1242 E---TCLIHEDA----EVLEASSKTEQVSGLVDNKTGRWARVTYKIILSYHGDSFDGWQR 1084
            E   T  IH D     EV   S   E  +G     +GRWAR  +KI++SYHG SFDGWQ+
Sbjct: 97   ERTRTSSIHNDENEIPEVEAGSDANEDRAG-----SGRWARANFKIVVSYHGPSFDGWQK 151

Query: 1083 QPGLNTVQGLVERSLGRFVDEKKAKLLRDKCLPVEGCATVAGRTDKGVTALQQVCSFYTW 904
            QP LNTVQGLVE+ LG FVDEK+AKLL++KC P+EGCA VAGRTDKGVTALQQVCSFYTW
Sbjct: 152  QPDLNTVQGLVEKCLGSFVDEKRAKLLKEKCKPLEGCALVAGRTDKGVTALQQVCSFYTW 211

Query: 903  RNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPLNDGEEGEQRS 724
            R DVK  +IED+IN+AAPG +RV+SV+QVSR FHPNFSAKWR Y YIFPLNDGE+ EQ  
Sbjct: 212  RKDVKPSEIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEKREQSI 271

Query: 723  ESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVNKL 544
            +SE++VE+   +     + NG  ++ +                    KPR+F++ RVN L
Sbjct: 272  DSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHE------KPRNFTICRVNLL 325

Query: 543  LRQLEGKLLSYKMFARDTKASKNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCVEL 364
            L++LEGKLLSYK FARDTKAS+N GPPTECFIYHARA EA LP  V D GEGRKVMCVEL
Sbjct: 326  LQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEATLPCPVNDHGEGRKVMCVEL 385

Query: 363  VGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGYAE 184
            V NRFLRKMVRVLVAT +R         ALLKL+D            PEGLCLVDVGY  
Sbjct: 386  VANRFLRKMVRVLVATLVREAAAGADEDALLKLVDATCRRATAPPAPPEGLCLVDVGYTN 445

Query: 183  FDSKNCLI 160
            FD +N LI
Sbjct: 446  FDPQNSLI 453


>ref|XP_006453182.1| hypothetical protein CICLE_v10008288mg [Citrus clementina]
            gi|557556408|gb|ESR66422.1| hypothetical protein
            CICLE_v10008288mg [Citrus clementina]
          Length = 447

 Score =  504 bits (1298), Expect = e-140
 Identities = 261/428 (60%), Positives = 309/428 (72%), Gaps = 7/428 (1%)
 Frame = -3

Query: 1422 ENQTPKKVYFHYNHTDTCKYPRWTARESYQFMYARPWQQVLDFYSNVVNGRLSLSGLFVT 1243
            +++  KKVY HYNHTD+CK+ RWTA+ESY+FM ARPWQ V+DFYS++V+GRL+LS LF T
Sbjct: 30   QSRAEKKVYVHYNHTDSCKFARWTAKESYEFMRARPWQDVVDFYSDIVSGRLTLSDLFGT 89

Query: 1242 E---TCLIHEDA----EVLEASSKTEQVSGLVDNKTGRWARVTYKIILSYHGDSFDGWQR 1084
            E   T  IH D     EV   S   E  +G     +GRWAR  +KI++SYHG SFDGWQ+
Sbjct: 90   ERTRTSSIHNDENEIPEVEAGSDANEDRAG-----SGRWARANFKIVVSYHGPSFDGWQK 144

Query: 1083 QPGLNTVQGLVERSLGRFVDEKKAKLLRDKCLPVEGCATVAGRTDKGVTALQQVCSFYTW 904
            QP LNTVQGLVE+ LG FVDEK+AKLL++KC P+EGCA VAGRTDKGVTALQQVCSFYTW
Sbjct: 145  QPDLNTVQGLVEKCLGSFVDEKRAKLLKEKCKPLEGCALVAGRTDKGVTALQQVCSFYTW 204

Query: 903  RNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPLNDGEEGEQRS 724
            R DVK  +IED+IN+AAPG +RV+SV+QVSR FHPNFSAKWR Y YIFPLNDGE+ EQ  
Sbjct: 205  RKDVKPSEIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEKREQSI 264

Query: 723  ESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVNKL 544
            +SE++VE+   +     + NG  ++ +                    KPR+F++ RVN L
Sbjct: 265  DSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHE------KPRNFTICRVNLL 318

Query: 543  LRQLEGKLLSYKMFARDTKASKNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCVEL 364
            L++LEGKLLSYK FARDTKAS+N GPPTECFIYHARA EA LP  V D GEGRKVMCVEL
Sbjct: 319  LQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEATLPCPVNDHGEGRKVMCVEL 378

Query: 363  VGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGYAE 184
            V NRFLRKMVRVLVAT +R         ALLKL+D            PEGLCLVDVGY  
Sbjct: 379  VANRFLRKMVRVLVATLVREAAAGADEDALLKLVDATCRRATAPPAPPEGLCLVDVGYTN 438

Query: 183  FDSKNCLI 160
            FD +N LI
Sbjct: 439  FDPQNSLI 446


>ref|XP_007014567.1| Pseudouridine synthase isoform 1 [Theobroma cacao]
            gi|508784930|gb|EOY32186.1| Pseudouridine synthase
            isoform 1 [Theobroma cacao]
          Length = 444

 Score =  502 bits (1293), Expect = e-139
 Identities = 262/427 (61%), Positives = 317/427 (74%)
 Frame = -3

Query: 1440 IRASLMENQTPKKVYFHYNHTDTCKYPRWTARESYQFMYARPWQQVLDFYSNVVNGRLSL 1261
            I +S+MEN+   KVY HYNH+D+C   RWTARESY+FMY R WQ V+DFYSNVVNGRL+L
Sbjct: 28   IISSVMENEAENKVYVHYNHSDSCSSARWTARESYRFMYDRAWQDVIDFYSNVVNGRLTL 87

Query: 1260 SGLFVTETCLIHEDAEVLEASSKTEQVSGLVDNKTGRWARVTYKIILSYHGDSFDGWQRQ 1081
            S LF TET  IH+D+E +E S +  +       ++GRW RVT+KII+SY+G +FDGWQ+Q
Sbjct: 88   STLFGTETS-IHDDSETVEVSDEKGE-------RSGRWERVTFKIIISYNGGAFDGWQKQ 139

Query: 1080 PGLNTVQGLVERSLGRFVDEKKAKLLRDKCLPVEGCATVAGRTDKGVTALQQVCSFYTWR 901
            PGLNTVQ +VERSLGRFVDEKKA+LL++K  P+EGCA VAGRTDKGV+A++QVCSFYTWR
Sbjct: 140  PGLNTVQEIVERSLGRFVDEKKAQLLKEKSKPLEGCAVVAGRTDKGVSAIRQVCSFYTWR 199

Query: 900  NDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPLNDGEEGEQRSE 721
             DVK  DIED+IN+ APG LRV+SV++VSR FHPNFSAKWRHY YIFPL++ E  +Q  E
Sbjct: 200  KDVKPWDIEDAINSVAPGKLRVVSVSEVSRVFHPNFSAKWRHYLYIFPLSNQEIEKQSCE 259

Query: 720  SELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVNKLL 541
            ++ +VE+      ++ +RNG  ++                   +  KP  FSV RVN+LL
Sbjct: 260  NKKEVENFISDGNYNEQRNGYLENIRWENVENLIISDNMGLEAAN-KPTRFSVCRVNQLL 318

Query: 540  RQLEGKLLSYKMFARDTKASKNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCVELV 361
            +QLE KLLSYKMFARDTKAS+N GPPTECF+YHARAAEAR+P S  D GEGR+VMCVELV
Sbjct: 319  QQLERKLLSYKMFARDTKASRNIGPPTECFMYHARAAEARIPCS--DHGEGREVMCVELV 376

Query: 360  GNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGYAEF 181
             NRFLRKMVRVLVATSIR         ALLKLM             P+GLCLVDVGY EF
Sbjct: 377  ANRFLRKMVRVLVATSIREAAAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVGYTEF 436

Query: 180  DSKNCLI 160
            D +NCL+
Sbjct: 437  DPQNCLL 443


>ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Populus trichocarpa]
            gi|550318755|gb|ERP50021.1| hypothetical protein
            POPTR_0018s14400g [Populus trichocarpa]
          Length = 448

 Score =  499 bits (1285), Expect = e-138
 Identities = 260/424 (61%), Positives = 313/424 (73%), Gaps = 1/424 (0%)
 Frame = -3

Query: 1428 LMENQTPKKVYFHYNHTDTCKYPRWTARESYQFMYARPWQQVLDFYSNVVNGRLSLSGLF 1249
            +ME Q  K VY  YNHTD+CK+ RWTARES+QFM+ARPWQ+V+DFYS  VNG+LSL  LF
Sbjct: 29   VMEAQNDK-VYVQYNHTDSCKFSRWTARESFQFMHARPWQEVVDFYSKSVNGQLSLLELF 87

Query: 1248 VTETCLIHEDAEVLEASSKTEQVSGLVD-NKTGRWARVTYKIILSYHGDSFDGWQRQPGL 1072
             T+   +H D ++ E S++T  + G+ + +K+GRWARVT+KI+LSYHG SFDGWQ+QPGL
Sbjct: 88   GTQAHDVHCDDKIEEVSNETGLLEGVSNVDKSGRWARVTFKIVLSYHGGSFDGWQKQPGL 147

Query: 1071 NTVQGLVERSLGRFVDEKKAKLLRDKCLPVEGCATVAGRTDKGVTALQQVCSFYTWRNDV 892
            NTVQGLVE+SLGRFVDEKKA+ L+++C P+EGCA+VAGRTDKGV+ALQQVCSFYTWR DV
Sbjct: 148  NTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVCSFYTWRKDV 207

Query: 891  KTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPLNDGEEGEQRSESEL 712
            K  +IED+IN  APG +RV S+++VSR FHPNFSAKWR Y YIFPLNDGE  E+  E E 
Sbjct: 208  KPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREE-IEGEG 266

Query: 711  DVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVNKLLRQL 532
             +E+    +  + +RN   +                       KPRSFSV RVN+LL+QL
Sbjct: 267  GIENFSSHENCEKQRNECGE-LASEENVENSIISDEDELQGAKKPRSFSVCRVNQLLQQL 325

Query: 531  EGKLLSYKMFARDTKASKNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCVELVGNR 352
            EGKLLSYKMFARDTKAS+N GPPTECF+YHARA E RLPS   D  +G +VMCVEL+ NR
Sbjct: 326  EGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPS--PDHEKGIRVMCVELIANR 383

Query: 351  FLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGYAEFDSK 172
            FLRKMVRVLVATS+R         ALLKLMD            P+GLCLVDVGY EFD +
Sbjct: 384  FLRKMVRVLVATSVREAAAGAQEDALLKLMDATCRRATAPPAPPDGLCLVDVGYTEFDPR 443

Query: 171  NCLI 160
            NCLI
Sbjct: 444  NCLI 447


>ref|XP_006372225.1| tRNA pseudouridine synthase family protein [Populus trichocarpa]
            gi|550318756|gb|ERP50022.1| tRNA pseudouridine synthase
            family protein [Populus trichocarpa]
          Length = 457

 Score =  493 bits (1270), Expect = e-137
 Identities = 260/433 (60%), Positives = 313/433 (72%), Gaps = 10/433 (2%)
 Frame = -3

Query: 1428 LMENQTPKKVYFHYNHTDTCKYPRWTARESYQFMYARPWQQVLDFYSNVVNGRLSLSGLF 1249
            +ME Q  K VY  YNHTD+CK+ RWTARES+QFM+ARPWQ+V+DFYS  VNG+LSL  LF
Sbjct: 29   VMEAQNDK-VYVQYNHTDSCKFSRWTARESFQFMHARPWQEVVDFYSKSVNGQLSLLELF 87

Query: 1248 VTETCL---------IHEDAEVLEASSKTEQVSGLVD-NKTGRWARVTYKIILSYHGDSF 1099
             T+            +H D ++ E S++T  + G+ + +K+GRWARVT+KI+LSYHG SF
Sbjct: 88   GTQVFFTMELKKAHDVHCDDKIEEVSNETGLLEGVSNVDKSGRWARVTFKIVLSYHGGSF 147

Query: 1098 DGWQRQPGLNTVQGLVERSLGRFVDEKKAKLLRDKCLPVEGCATVAGRTDKGVTALQQVC 919
            DGWQ+QPGLNTVQGLVE+SLGRFVDEKKA+ L+++C P+EGCA+VAGRTDKGV+ALQQVC
Sbjct: 148  DGWQKQPGLNTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVC 207

Query: 918  SFYTWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPLNDGEE 739
            SFYTWR DVK  +IED+IN  APG +RV S+++VSR FHPNFSAKWR Y YIFPLNDGE 
Sbjct: 208  SFYTWRKDVKPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLNDGEN 267

Query: 738  GEQRSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVL 559
             E+  E E  +E+    +  + +RN   +                       KPRSFSV 
Sbjct: 268  REE-IEGEGGIENFSSHENCEKQRNECGE-LASEENVENSIISDEDELQGAKKPRSFSVC 325

Query: 558  RVNKLLRQLEGKLLSYKMFARDTKASKNEGPPTECFIYHARAAEARLPSSVKDSGEGRKV 379
            RVN+LL+QLEGKLLSYKMFARDTKAS+N GPPTECF+YHARA E RLPS   D  +G +V
Sbjct: 326  RVNQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPS--PDHEKGIRV 383

Query: 378  MCVELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVD 199
            MCVEL+ NRFLRKMVRVLVATS+R         ALLKLMD            P+GLCLVD
Sbjct: 384  MCVELIANRFLRKMVRVLVATSVREAAAGAQEDALLKLMDATCRRATAPPAPPDGLCLVD 443

Query: 198  VGYAEFDSKNCLI 160
            VGY EFD +NCLI
Sbjct: 444  VGYTEFDPRNCLI 456


>gb|EXC12817.1| tRNA pseudouridine synthase A [Morus notabilis]
          Length = 446

 Score =  493 bits (1269), Expect = e-136
 Identities = 260/426 (61%), Positives = 303/426 (71%), Gaps = 4/426 (0%)
 Frame = -3

Query: 1425 MENQTPKKVYFHYNHTDTCKYPRWTARESYQFMYARPWQQVLDFYSNVVNGRLSLSGLFV 1246
            ME  +  K Y HYNH+D C++ RWTARESYQFMY RPWQQVLDFYSN+VNG  S S LF 
Sbjct: 29   METHSTNKDYVHYNHSDPCRFSRWTARESYQFMYGRPWQQVLDFYSNLVNGTTSFSSLFP 88

Query: 1245 TETCLIHED----AEVLEASSKTEQVSGLVDNKTGRWARVTYKIILSYHGDSFDGWQRQP 1078
                   +D    AE+ E S    ++    + ++GRWAR T+K++L YHG SFDGWQ+QP
Sbjct: 89   LHKKYQVDDDDYDAEIPEISDDKVKLKKS-EERSGRWARATFKVVLGYHGASFDGWQKQP 147

Query: 1077 GLNTVQGLVERSLGRFVDEKKAKLLRDKCLPVEGCATVAGRTDKGVTALQQVCSFYTWRN 898
            GLNTVQGLVERSLGRFVDEKKA+LL+DKCLP+E C  VAGRTDKGVTALQQVCSFYTWR 
Sbjct: 148  GLNTVQGLVERSLGRFVDEKKAQLLKDKCLPLEACTVVAGRTDKGVTALQQVCSFYTWRK 207

Query: 897  DVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPLNDGEEGEQRSES 718
            D+  QDIE++IN AA G L+  SV++VSR FHPNFSAKWR Y YIFP ND E+ EQ +++
Sbjct: 208  DITCQDIEEAINNAALGKLKAKSVSEVSRVFHPNFSAKWRRYLYIFPFNDEEDEEQSNKN 267

Query: 717  ELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVNKLLR 538
              ++E+      ++   +G  +  D                  G KP SFSV RV++LLR
Sbjct: 268  GENLET------YEKIESGCGEWNDESFGNLIIDDSEELES--GKKPSSFSVSRVDQLLR 319

Query: 537  QLEGKLLSYKMFARDTKASKNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCVELVG 358
             LEGKLLSYKMFARDTKAS+NEGPPTECFIYHARAAEARLP+S  D  EGRK+MCVELV 
Sbjct: 320  LLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPTS--DCTEGRKIMCVELVA 377

Query: 357  NRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGYAEFD 178
            NRFLRKMVRVLVATSIR         ALLKLMD            P+GLCLVDVGY+EF 
Sbjct: 378  NRFLRKMVRVLVATSIREAAAGAEEDALLKLMDATCRRATAPPAPPDGLCLVDVGYSEFK 437

Query: 177  SKNCLI 160
              NCLI
Sbjct: 438  PNNCLI 443


>ref|XP_007160215.1| hypothetical protein PHAVU_002G302500g [Phaseolus vulgaris]
            gi|561033630|gb|ESW32209.1| hypothetical protein
            PHAVU_002G302500g [Phaseolus vulgaris]
          Length = 440

 Score =  481 bits (1238), Expect = e-133
 Identities = 251/421 (59%), Positives = 299/421 (71%)
 Frame = -3

Query: 1422 ENQTPKKVYFHYNHTDTCKYPRWTARESYQFMYARPWQQVLDFYSNVVNGRLSLSGLFVT 1243
            E ++  + + HYNHTD  +Y RWTARES+QFMYARPWQ+V DFY NVV   LSLS LF  
Sbjct: 40   EVESETESHVHYNHTDPSEYARWTARESFQFMYARPWQRVNDFYFNVVRANLSLSLLFGP 99

Query: 1242 ETCLIHEDAEVLEASSKTEQVSGLVDNKTGRWARVTYKIILSYHGDSFDGWQRQPGLNTV 1063
            +T L H D  +   S ++E  S   ++++GRWAR T+KIILSYHG SFDGWQ+QPGLNTV
Sbjct: 100  QTILDHNDTGIAALSDQSELESVASEDRSGRWARRTFKIILSYHGGSFDGWQKQPGLNTV 159

Query: 1062 QGLVERSLGRFVDEKKAKLLRDKCLPVEGCATVAGRTDKGVTALQQVCSFYTWRNDVKTQ 883
            QG+VE SLG+FVDEKK +LL+DK LP+EGCA VAGRTDKGVT LQQVCSFYTW+ DVK +
Sbjct: 160  QGIVEASLGKFVDEKKTQLLKDKGLPIEGCAVVAGRTDKGVTGLQQVCSFYTWKKDVKPR 219

Query: 882  DIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPLNDGEEGEQRSESELDVE 703
            DIED+IN AA G LRV+SV++VSR FHPNFSAKWRHY YIFPL +G     R +S  + E
Sbjct: 220  DIEDAINQAALGKLRVISVSEVSRVFHPNFSAKWRHYLYIFPLTNG----YRDQSNSNGE 275

Query: 702  STGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVNKLLRQLEGK 523
            S  ++K ++M  + S    +                    K   FSV +VN LLR+LEGK
Sbjct: 276  SCDISKYNEMHDSSSKDGIENQE-----------------KSYLFSVSKVNVLLRKLEGK 318

Query: 522  LLSYKMFARDTKASKNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCVELVGNRFLR 343
            LLSYKMFARDTKAS+N+GPPTECF+YHARA E +LP++  D GE  KVMCVELV NRFLR
Sbjct: 319  LLSYKMFARDTKASRNDGPPTECFVYHARAMEVKLPTT--DCGEETKVMCVELVANRFLR 376

Query: 342  KMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGYAEFDSKNCL 163
            KMVRVLVATSIR         AL+KLMD            P+GLCLVDVGY EFD + C 
Sbjct: 377  KMVRVLVATSIREAAAGAEDDALIKLMDATCRRATAPPAPPDGLCLVDVGYTEFDPQKCF 436

Query: 162  I 160
            I
Sbjct: 437  I 437


>ref|XP_004242889.1| PREDICTED: tRNA pseudouridine synthase A-like [Solanum lycopersicum]
          Length = 436

 Score =  474 bits (1221), Expect = e-131
 Identities = 247/432 (57%), Positives = 310/432 (71%), Gaps = 8/432 (1%)
 Frame = -3

Query: 1431 SLMENQTP----KKVYFHYNHTDTCKYPRWTARESYQFMYARPWQQVLDFYSNVVNGRLS 1264
            +LMEN +P    +KV+FHYNHTD+CK+ RWT+RE Y+FMYARPW +V+DFY+++V G +S
Sbjct: 13   NLMENSSPTATQQKVHFHYNHTDSCKFSRWTSRECYEFMYARPWHKVVDFYADMVKGHIS 72

Query: 1263 LSGLFVTETCLIHEDAEVLEASSKTEQVSGLVDNKT----GRWARVTYKIILSYHGDSFD 1096
            LSGLF  ET   HEDAE+ E   K+E V+  V +K+    GRWAR  + I+LSYHG SFD
Sbjct: 73   LSGLFGKETPADHEDAEIREDHEKSELVNIPVKDKSRDKSGRWARANFMIVLSYHGGSFD 132

Query: 1095 GWQRQPGLNTVQGLVERSLGRFVDEKKAKLLRDKCLPVEGCATVAGRTDKGVTALQQVCS 916
            GWQ+QP LNTVQGLVERSLG FVDEKKA+LL+DK LP+E CA VAGRTDKGV+A QQVCS
Sbjct: 133  GWQKQPDLNTVQGLVERSLGEFVDEKKAQLLKDKNLPLEACALVAGRTDKGVSASQQVCS 192

Query: 915  FYTWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPLNDGEEG 736
            FYTWR DVK +D++ +++ AAPG +RV+S+T+VSR FHPNFSAKWRHY YIFP++D    
Sbjct: 193  FYTWRKDVKIEDVKAALDKAAPGKIRVVSLTKVSREFHPNFSAKWRHYLYIFPIDDVLGE 252

Query: 735  EQRSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLR 556
            +Q  +  +D +ST + + ++ +++      D                  G KP  F V +
Sbjct: 253  KQGGQIWID-DSTNVHQQNECDKS------DVDKSNVNEINNENDKLVHGNKPTKFEVGK 305

Query: 555  VNKLLRQLEGKLLSYKMFARDTKASKNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVM 376
            VN+LL QLEGKLLSYKMFARDTKAS+N GPPTECF++HARA E  +P + KD G   K M
Sbjct: 306  VNRLLGQLEGKLLSYKMFARDTKASRNIGPPTECFVFHARAIETSIPCA-KD-GSHMKTM 363

Query: 375  CVELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDV 196
            C+ELV NRFLRKMVRVLVAT+IR         ALLKLMD            P+GLCLVDV
Sbjct: 364  CIELVANRFLRKMVRVLVATAIREAAAGADDDALLKLMDATCRRATAPPAPPDGLCLVDV 423

Query: 195  GYAEFDSKNCLI 160
            GY ++D ++CLI
Sbjct: 424  GYTDYDIRHCLI 435


>ref|XP_003532450.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform
            X1 [Glycine max]
          Length = 444

 Score =  473 bits (1216), Expect = e-130
 Identities = 244/423 (57%), Positives = 295/423 (69%), Gaps = 1/423 (0%)
 Frame = -3

Query: 1425 MENQTPKKVYFHYNHTDTCKYPRWTARESYQFMYARPWQQVLDFYSNVVNGRLSLSGLFV 1246
            M N    + + HYNHT   KY RWTARES++FMYARPWQ+V DFY N+V   LSL  LF 
Sbjct: 41   MNNLRQTETHVHYNHTHPSKYARWTARESFEFMYARPWQRVNDFYLNIVRANLSLPLLFG 100

Query: 1245 TETCLI-HEDAEVLEASSKTEQVSGLVDNKTGRWARVTYKIILSYHGDSFDGWQRQPGLN 1069
             +T ++ H D  +   S  +E  S   ++++GRWAR T+KIILSYHG SFDGWQ+QPGLN
Sbjct: 101  AQTLVVDHNDTGIAALSGSSELESVASEDRSGRWARTTFKIILSYHGGSFDGWQKQPGLN 160

Query: 1068 TVQGLVERSLGRFVDEKKAKLLRDKCLPVEGCATVAGRTDKGVTALQQVCSFYTWRNDVK 889
            TVQ +VE SLG+FVDEKK +LL+DK LP+EGCA VAGRTDKGVT LQQVCSFYTW+ DVK
Sbjct: 161  TVQSIVEGSLGKFVDEKKTQLLKDKGLPIEGCAIVAGRTDKGVTGLQQVCSFYTWKKDVK 220

Query: 888  TQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPLNDGEEGEQRSESELD 709
             +DIED+IN AAPG LRV+SV++VSR FHPNFSAKWR Y YIFPL +G   +Q S++   
Sbjct: 221  PRDIEDAINHAAPGKLRVISVSEVSRVFHPNFSAKWRRYLYIFPLTNGGYTDQSSDNGEF 280

Query: 708  VESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVNKLLRQLE 529
             +S    +IHD       ++                      K  +FS+ +VN+LLR+LE
Sbjct: 281  YDSFKYNEIHDSASKDELENEK--------------------KSYAFSISKVNRLLRKLE 320

Query: 528  GKLLSYKMFARDTKASKNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCVELVGNRF 349
            GKLLSYKMFARDTKAS+N+GPPTECF+YHARA E +LP++  D GE  KVMCVELV NRF
Sbjct: 321  GKLLSYKMFARDTKASRNDGPPTECFVYHARAMEVKLPAT--DHGEETKVMCVELVANRF 378

Query: 348  LRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGYAEFDSKN 169
            LRKMVRVLVATSIR         AL+KLMD            P+GLCLVDVGY EF+ + 
Sbjct: 379  LRKMVRVLVATSIREAAAGAEDDALIKLMDATCRRATAPPAPPDGLCLVDVGYTEFEPQK 438

Query: 168  CLI 160
            C I
Sbjct: 439  CFI 441


>ref|XP_006344572.1| PREDICTED: uncharacterized protein LOC102592314 [Solanum tuberosum]
          Length = 436

 Score =  466 bits (1200), Expect = e-128
 Identities = 244/444 (54%), Positives = 303/444 (68%), Gaps = 4/444 (0%)
 Frame = -3

Query: 1479 MITFPRVKLVSEHIRASLMENQTPKKVYFHYNHTDTCKYPRWTARESYQFMYARPWQQVL 1300
            M+ +P       ++  +  +    +KV+FHYNHTD+CK+ RWT+RE Y+FMYAR W +V+
Sbjct: 1    MLRYPTTVRTLRNLMENPSQTAAQQKVHFHYNHTDSCKFSRWTSRECYEFMYARLWHKVV 60

Query: 1299 DFYSNVVNGRLSLSGLFVTETCLIHEDAEVLEASSKTEQVSGLVDNKT----GRWARVTY 1132
            DFY+++V G  SLS LF  ET   HEDAE+ E   K+E V+  V +K+    GRWAR  +
Sbjct: 61   DFYADMVKGHTSLSRLFGKETPADHEDAEIREDHEKSELVNIPVKDKSRDKSGRWARANF 120

Query: 1131 KIILSYHGDSFDGWQRQPGLNTVQGLVERSLGRFVDEKKAKLLRDKCLPVEGCATVAGRT 952
             I+LSYHG SFDGWQ+QP LNTVQGLVERSLG FVDEKKA+LL+DK LP+E CA VAGRT
Sbjct: 121  MIVLSYHGGSFDGWQKQPDLNTVQGLVERSLGEFVDEKKAQLLKDKNLPLEACALVAGRT 180

Query: 951  DKGVTALQQVCSFYTWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHY 772
            DKGV+A QQVCSFYTWR DVK +D++ +++ AAPG +RV+S+T+VSR FHPNFSAKWRHY
Sbjct: 181  DKGVSASQQVCSFYTWRKDVKIEDVKAALDKAAPGKIRVVSLTKVSREFHPNFSAKWRHY 240

Query: 771  FYIFPLNDGEEGEQRSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXX 592
             YIFP++D    +QR +  +D    G   +H     G     D                 
Sbjct: 241  LYIFPIDDVLGEKQRGQIWID----GSTDVHQQNECGKS---DIDKSNVNEINDENNELV 293

Query: 591  SGVKPRSFSVLRVNKLLRQLEGKLLSYKMFARDTKASKNEGPPTECFIYHARAAEARLPS 412
             G KP  F V +VN+LL QLEGKLLSYKMFARDTKAS+N GPPTECF++HARA E  +P 
Sbjct: 294  HGNKPTKFEVGKVNRLLGQLEGKLLSYKMFARDTKASRNIGPPTECFVFHARAIETSIPC 353

Query: 411  SVKDSGEGRKVMCVELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXX 232
            + KD G   K MC+ELV NRFLRKMVRVLVAT+IR         ALLKLMD         
Sbjct: 354  A-KD-GSLMKTMCIELVANRFLRKMVRVLVATAIREAAAGADDDALLKLMDATCRRATAP 411

Query: 231  XXXPEGLCLVDVGYAEFDSKNCLI 160
               P+GLCLVDVGY ++D ++CLI
Sbjct: 412  PAPPDGLCLVDVGYTDYDIRHCLI 435


>gb|EYU25758.1| hypothetical protein MIMGU_mgv1a006671mg [Mimulus guttatus]
          Length = 435

 Score =  464 bits (1194), Expect = e-128
 Identities = 244/442 (55%), Positives = 297/442 (67%), Gaps = 2/442 (0%)
 Frame = -3

Query: 1479 MITFPRVKLVSEHIRASLMENQTPK--KVYFHYNHTDTCKYPRWTARESYQFMYARPWQQ 1306
            MI  P        +R +LMEN  P   K Y HY H D C   RW A+ESYQFMY +PWQ+
Sbjct: 1    MIKQPAAAAAGLRLR-NLMENSAPPPPKGYIHYQHNDACSLSRWNAKESYQFMYEKPWQK 59

Query: 1305 VLDFYSNVVNGRLSLSGLFVTETCLIHEDAEVLEASSKTEQVSGLVDNKTGRWARVTYKI 1126
            V DFY +VVNGR S+S LF  ET  +H+ AE +E   K + +S    +++GRWARVT+KI
Sbjct: 60   VNDFYLDVVNGRRSVSELFERETYAVHDGAETIEDCDKPDLMSVRAKDRSGRWARVTFKI 119

Query: 1125 ILSYHGDSFDGWQRQPGLNTVQGLVERSLGRFVDEKKAKLLRDKCLPVEGCATVAGRTDK 946
             LSYHG SFDGWQ+QPGLNTVQGL+E+SLG+FVDE KA++L++K LPV+ C TVAGRTDK
Sbjct: 120  RLSYHGSSFDGWQKQPGLNTVQGLIEKSLGKFVDEDKAQMLKEKKLPVDCCVTVAGRTDK 179

Query: 945  GVTALQQVCSFYTWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFY 766
            GVTAL+Q CSFYTWR D+KT DIED+IN  APG +R +SV+QV+R FHPNFSAKWR Y Y
Sbjct: 180  GVTALEQFCSFYTWRKDIKTVDIEDAINGVAPGKIRAISVSQVTRDFHPNFSAKWRRYLY 239

Query: 765  IFPLNDGEEGEQRSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSG 586
            IFP +D    ++ S+ E +V  + +   HD      P                     +G
Sbjct: 240  IFPFDDENVDDEASQCEKNVLDSDVC--HDGRYGELP---GVENCGNEIDDYEQTETQTG 294

Query: 585  VKPRSFSVLRVNKLLRQLEGKLLSYKMFARDTKASKNEGPPTECFIYHARAAEARLPSSV 406
             KP SF V  VN+LL  LEGKLLS++MFARDTKAS+N GPPTECFI+H+RA+EA +    
Sbjct: 295  HKPLSFDVSCVNRLLHHLEGKLLSFRMFARDTKASRNIGPPTECFIFHSRASEAYI--RC 352

Query: 405  KDSGEGRKVMCVELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXX 226
               G   K+MC+ELV NRFLRKMVRVLVAT+IR         ALLKL+D           
Sbjct: 353  PKEGTRSKIMCIELVANRFLRKMVRVLVATAIREAAAGADEDALLKLIDATCRRATAPPA 412

Query: 225  XPEGLCLVDVGYAEFDSKNCLI 160
             P+GLCLVDVGYAEFD KNC I
Sbjct: 413  PPDGLCLVDVGYAEFDRKNCFI 434


>ref|XP_007222727.1| hypothetical protein PRUPE_ppa006478mg [Prunus persica]
            gi|462419663|gb|EMJ23926.1| hypothetical protein
            PRUPE_ppa006478mg [Prunus persica]
          Length = 409

 Score =  464 bits (1194), Expect = e-128
 Identities = 243/422 (57%), Positives = 299/422 (70%)
 Frame = -3

Query: 1425 MENQTPKKVYFHYNHTDTCKYPRWTARESYQFMYARPWQQVLDFYSNVVNGRLSLSGLFV 1246
            MEN    KV   YNHTD C + RWT +E +QFM ARPWQQV+DFYS+VV  R  LS L +
Sbjct: 1    MEN----KVLIQYNHTDPCSFARWTTKECFQFMSARPWQQVMDFYSDVVKDRKPLSAL-L 55

Query: 1245 TETCLIHEDAEVLEASSKTEQVSGLVDNKTGRWARVTYKIILSYHGDSFDGWQRQPGLNT 1066
             + CL   +      S    Q      +K GRWAR+T+KI++SYHG SFDGWQRQPGLNT
Sbjct: 56   GKACLSKSNINNRLESLPPSQ------DKGGRWARLTFKIVVSYHGGSFDGWQRQPGLNT 109

Query: 1065 VQGLVERSLGRFVDEKKAKLLRDKCLPVEGCATVAGRTDKGVTALQQVCSFYTWRNDVKT 886
            VQ +VE+SLG+FVDE+KA++L+DK LP+EG A VAGRTDKGVTA+ QVCSFYTWR DVK+
Sbjct: 110  VQSVVEKSLGKFVDERKAQMLKDKGLPLEGAALVAGRTDKGVTAVHQVCSFYTWRKDVKS 169

Query: 885  QDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPLNDGEEGEQRSESELDV 706
            QDI D+IN+AAPG LRV+SVT+VSR FHPNF+AKWRHY YIFP ND E+ EQ ++S  + 
Sbjct: 170  QDITDAINSAAPGKLRVVSVTEVSRAFHPNFTAKWRHYLYIFPFNDEEDMEQSNQSGENA 229

Query: 705  ESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVNKLLRQLEG 526
            ++    + +   +NG  +  +                   +KPR F+V RVN+LL++LEG
Sbjct: 230  QNFKSLENYHEHKNGCDQCNEANVGNLVINDNEDLET---LKPREFTVSRVNQLLQKLEG 286

Query: 525  KLLSYKMFARDTKASKNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCVELVGNRFL 346
            KLLSYKMFARDTK S+NEGPPTECF+YHARA E++LP S  +  +GR+VMC+ELV NRFL
Sbjct: 287  KLLSYKMFARDTKPSRNEGPPTECFLYHARAKESKLPCS--EHEKGRRVMCIELVANRFL 344

Query: 345  RKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGYAEFDSKNC 166
            R+MVRVLVATSIR         ALLKLMD            P+GLCLVDVGY EFD ++C
Sbjct: 345  RRMVRVLVATSIREAAAGADEDALLKLMDATCRRATAPPAPPDGLCLVDVGYEEFDPQDC 404

Query: 165  LI 160
            LI
Sbjct: 405  LI 406


>ref|XP_004503558.1| PREDICTED: tRNA pseudouridine synthase A-like [Cicer arietinum]
          Length = 422

 Score =  457 bits (1177), Expect = e-126
 Identities = 236/413 (57%), Positives = 287/413 (69%)
 Frame = -3

Query: 1398 YFHYNHTDTCKYPRWTARESYQFMYARPWQQVLDFYSNVVNGRLSLSGLFVTETCLIHED 1219
            + HYNHT   KY RW ARES++FMYARPWQ V DFY N V G  SL  LF  +T   H+D
Sbjct: 30   HVHYNHTHPSKYTRWNARESFEFMYARPWQLVNDFYLNAVRGNSSLPLLFGVQTVPDHDD 89

Query: 1218 AEVLEASSKTEQVSGLVDNKTGRWARVTYKIILSYHGDSFDGWQRQPGLNTVQGLVERSL 1039
            + +   S KTE   G+  ++ GRWAR+ +KI+LSYHG+SFDGWQ+QP LNTVQ +VE SL
Sbjct: 90   SGISVLSDKTELEKGVSKDRGGRWARINFKIVLSYHGESFDGWQKQPSLNTVQSVVEASL 149

Query: 1038 GRFVDEKKAKLLRDKCLPVEGCATVAGRTDKGVTALQQVCSFYTWRNDVKTQDIEDSINA 859
            G+FVDE K +LL++K LP+EGCA+VAGRTDKGVTALQQVCSFYTW+ D+  +DIED+IN 
Sbjct: 150  GKFVDEMKTQLLKEKGLPIEGCASVAGRTDKGVTALQQVCSFYTWKKDINPRDIEDAIND 209

Query: 858  AAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPLNDGEEGEQRSESELDVESTGMAKIH 679
             APG LRV+SV +VSR FHPNFSAKWR Y YIFPL D  + +Q   +E   +     ++ 
Sbjct: 210  GAPGKLRVISVHEVSRAFHPNFSAKWRRYLYIFPLTDEGDKDQSGSNEESCDRFIYNEVC 269

Query: 678  DMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVNKLLRQLEGKLLSYKMFA 499
            D       ++                     +K   FSV +VN+LL++LEGKLLSYKMFA
Sbjct: 270  DSVSKDELEN--------------------EMKSYVFSVRKVNRLLQKLEGKLLSYKMFA 309

Query: 498  RDTKASKNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCVELVGNRFLRKMVRVLVA 319
            RDTKAS+N+GPPTECF+YHARA EARLP++  D+GE R VMC+ELV NRFLRKMVRVLVA
Sbjct: 310  RDTKASRNDGPPTECFVYHARAMEARLPTT--DNGEAR-VMCIELVANRFLRKMVRVLVA 366

Query: 318  TSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGYAEFDSKNCLI 160
            T+IR         ALL+LMD            P+GLCLVDVGYAEFD K C I
Sbjct: 367  TTIREAAAGAEDDALLRLMDATCRRATAPPAPPDGLCLVDVGYAEFDQKKCFI 419


>ref|XP_003630601.1| tRNA pseudouridine synthase A [Medicago truncatula]
            gi|355524623|gb|AET05077.1| tRNA pseudouridine synthase A
            [Medicago truncatula]
          Length = 400

 Score =  448 bits (1152), Expect = e-123
 Identities = 235/423 (55%), Positives = 294/423 (69%), Gaps = 1/423 (0%)
 Frame = -3

Query: 1425 MENQTPKKVYF-HYNHTDTCKYPRWTARESYQFMYARPWQQVLDFYSNVVNGRLSLSGLF 1249
            ME+Q+ +  +  HYNHT   KY RW ARES++FMYARPWQ+V  FYSN V G  SL  LF
Sbjct: 1    MEHQSERDSHHVHYNHTHPSKYARWNARESFEFMYARPWQRVNHFYSNTVRGNFSLPLLF 60

Query: 1248 VTETCLIHEDAEVLEASSKTEQVSGLVDNKTGRWARVTYKIILSYHGDSFDGWQRQPGLN 1069
             ++T  +H D+ V E S   E  SG   +++G+WAR  +KI+LSYHG SFDGWQ+QP LN
Sbjct: 61   QSQTLPVH-DSRVPEIS---EFQSGASKDRSGKWARFNFKILLSYHGGSFDGWQKQPNLN 116

Query: 1068 TVQGLVERSLGRFVDEKKAKLLRDKCLPVEGCATVAGRTDKGVTALQQVCSFYTWRNDVK 889
            TVQ +VE SLG+FVDE K +LL+DK LP++GCA VAGRTDKGVTALQQVCSFYTW+ D+K
Sbjct: 117  TVQSVVEVSLGKFVDENKTQLLKDKGLPIQGCAAVAGRTDKGVTALQQVCSFYTWKKDIK 176

Query: 888  TQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPLNDGEEGEQRSESELD 709
             ++IED+IN AAPG LRV+SV +VSR FHPNFSAKWR Y YIFPL DG++ +Q   +   
Sbjct: 177  PREIEDAINDAAPGKLRVVSVYEVSRAFHPNFSAKWRRYLYIFPLTDGQDKDQSGGNGES 236

Query: 708  VESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVNKLLRQLE 529
             +S    +I D +     +  +                    K   F V +VN+LL++LE
Sbjct: 237  CDSFIYNEICDSDSKDELEKEN--------------------KSYVFGVRKVNRLLQKLE 276

Query: 528  GKLLSYKMFARDTKASKNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCVELVGNRF 349
            GK+LSYKMFARDTKAS+N+GPPTECF++HARA EA+LP  + ++GE  +VMC+ELV NRF
Sbjct: 277  GKMLSYKMFARDTKASRNDGPPTECFVHHARAMEAKLP--ITENGEETRVMCIELVANRF 334

Query: 348  LRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGYAEFDSKN 169
            LRKMVRVLVAT+IR         ALLKLMD            P+GLCLVDVGYAEF+ + 
Sbjct: 335  LRKMVRVLVATTIREAAAGAEDDALLKLMDATCRRATAPPAPPDGLCLVDVGYAEFEREK 394

Query: 168  CLI 160
            C I
Sbjct: 395  CFI 397