BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00018085
         (610 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_005090363.1| DNA-dependent RNA polymerase (mitochondrion)...   231   1e-58
ref|YP_002608352.1| DNA-dependent RNA polymerase [Vitis vinifera...   160   4e-37
ref|NP_862328.1| hypothetical protein BrnaMpl_p6 [Brassica napus...   152   6e-35
ref|YP_005090412.1| orf2 gene product (mitochondrion) [Boea hygr...   127   3e-27
gb|AAS15052.1| DNA-directed RNA polymerase [Daucus carota]            119   9e-25
dbj|BAD66791.1| orf598 [Beta vulgaris subsp. vulgaris]                116   6e-24
gb|AFI44306.1| RNA polymerase (mitochondrion) [Silene vulgaris]       111   2e-22
ref|YP_588388.1| hypothetical protein ZeamMp138 [Zea mays subsp....   106   5e-21
gb|EPS74139.1| hypothetical protein M569_00616, partial [Genlise...   105   1e-20
emb|CAQ52964.1| unnamed protein product [Lolium perenne]              105   1e-20
emb|CAQ52970.1| unnamed protein product [Lolium perenne]              103   4e-20
emb|CAQ52967.1| unnamed protein product [Lolium perenne]              100   3e-19
gb|AFI44277.1| RNA polymerase (mitochondrion) [Silene vulgaris]       100   6e-19
emb|CAA71809.1| RNA polymerase [Beta vulgaris subsp. maritima]         91   3e-16
ref|YP_588349.1| hypothetical protein ZeamMp088 [Zea mays subsp....    80   4e-13
pir||S22768 130K protein - maize mitochondrial plasmid-like DNA S-2    76   7e-12
sp|P10581.1|RPOP_MAIZE RecName: Full=Probable DNA-directed RNA p...    76   7e-12
ref|NP_064083.1| orf352 gene product (mitochondrion) [Beta vulga...    72   2e-10
emb|CBJ20748.1| hypothetical protein [Beta vulgaris subsp. marit...    72   2e-10
ref|NP_064020.1| orf348 gene product (mitochondrion) [Beta vulga...    71   2e-10

>ref|YP_005090363.1| DNA-dependent RNA polymerase (mitochondrion) [Phoenix dactylifera]
           gi|343478415|gb|AEM43903.1| DNA-dependent RNA polymerase
           (mitochondrion) [Phoenix dactylifera]
          Length = 875

 Score =  231 bits (589), Expect = 1e-58
 Identities = 115/194 (59%), Positives = 147/194 (75%)
 Frame = -2

Query: 585 IASSAAFKYKKFYLYDDALQWYKEKQSLIYASDESLISFAKDASDPFQFIAKVLCHNRAY 406
           +A +AAFKYKKF+  DDA +WY E QSL+ ASDESL+ FA  ASDPFQF+AK+L  +   
Sbjct: 415 LACAAAFKYKKFFNLDDAFKWYNEHQSLMLASDESLMKFAVQASDPFQFLAKILSKDIVS 474

Query: 405 EYNSNPISQDAASSAYQIMSYLLLNEDLARKTNIIPHSDGQIQDVYIHLLNEFKDYLHKK 226
            Y+  P++QDA++SAYQIMSYLLLN+++ R+TN++P SDGQIQDVY+ L  E K +L  +
Sbjct: 475 NYHKVPVTQDASASAYQIMSYLLLNQEMGRRTNLLPSSDGQIQDVYMCLQEELKKFLVTR 534

Query: 225 INDTSKMEIIESKLDRKLIKSLFMPLIYGKTAYSMEMDIRDKYGLLLSRKDSFNLAKLCI 46
           + D +K  +I S L RKL+K LFMPLIYGKT  SM  DI D YG LLS KDS+ LA LC 
Sbjct: 535 L-DANKYAVILSMLTRKLVKGLFMPLIYGKTVSSMAKDIMDHYGSLLSHKDSYGLAVLCY 593

Query: 45  EFINHKYPDIINLM 4
           EF++ KYPDI+NL+
Sbjct: 594 EFLSLKYPDIVNLL 607


>ref|YP_002608352.1| DNA-dependent RNA polymerase [Vitis vinifera]
            gi|209954148|emb|CAQ77581.1| DNA-dependent RNA
            polymerase. This is a family of single chain RNA
            polymerases; pfam00940 [Vitis vinifera]
            gi|239764752|gb|ACS15222.1| DNA-dependent RNA polymerase
            [Vitis vinifera]
          Length = 975

 Score =  160 bits (404), Expect = 4e-37
 Identities = 92/209 (44%), Positives = 126/209 (60%), Gaps = 14/209 (6%)
 Frame = -2

Query: 588  IIASSAAFKYKKFYLYDDALQWYKEKQSLIYASDESLISFAKDASDPFQFIAKVLC--HN 415
            I +++AAF YKKF  Y D+ QWY +  S+  +S ES+I  A  A+DP+QFI+KVLC   N
Sbjct: 538  IASAAAAFHYKKFESYKDSYQWYLDHVSMKASSAESIIELALSAADPYQFISKVLCIESN 597

Query: 414  RAYEYNSNPISQDAASSAYQIMSYLLLNEDLARKTNIIPHSD------------GQIQDV 271
                    PI+QDA++SAYQIMSY LL+ DLA KTN+IP+ D             +I+D+
Sbjct: 598  NKSNLIQIPITQDASASAYQIMSYFLLDNDLALKTNLIPYIDYHYSPEYDFSDNKKIKDI 657

Query: 270  YIHLLNEFKDYLHKKINDTSKMEIIESKLDRKLIKSLFMPLIYGKTAYSMEMDIRDKYGL 91
            Y  LL E K Y  K++ + +  +I+  +L RKL+K LFMP+IYGKT  S+  D    +  
Sbjct: 658  YTILLEELKVYFRKELTN-NLADIVCPRLTRKLVKVLFMPMIYGKTVISIANDFNQHFDS 716

Query: 90   LLSRKDSFNLAKLCIEFINHKYPDIINLM 4
            LL + +   LAK    F    YP I+NLM
Sbjct: 717  LLDKGECMQLAKKIYIFYKTYYPGIVNLM 745


>ref|NP_862328.1| hypothetical protein BrnaMpl_p6 [Brassica napus]
            gi|23200585|dbj|BAC16369.1| orf6 [Brassica napus]
          Length = 1078

 Score =  152 bits (385), Expect = 6e-35
 Identities = 89/214 (41%), Positives = 128/214 (59%), Gaps = 19/214 (8%)
 Frame = -2

Query: 585  IASSAAFKYKKFYLYDDALQWYKEKQSLIYASDESLISFAKDASDPFQFIAKVL------ 424
            +A +  FKY+KF  Y ++  W K +   +  +  +++ FA++A DPFQF++K L      
Sbjct: 542  LAIATGFKYQKFSNYKESYDWIKNE---LIPNQSNILEFARNADDPFQFLSKALYLLYFI 598

Query: 423  ----------CHNRAYEYNSNPISQDAASSAYQIMSYLLLNEDLARKTNIIPHSDGQIQD 274
                        +  Y  N  P+SQDA++SAYQIMS+LLLNEDL + TN+I  S+ +IQD
Sbjct: 599  SENEKGTSFYSSDLRYLLNEIPVSQDASASAYQIMSFLLLNEDLGKGTNMIYGSEDKIQD 658

Query: 273  VYIHLLNEFKDYLHKK--INDTSKME-IIESKLDRKLIKSLFMPLIYGKTAYSMEMDIRD 103
            +Y  L +E  +YL K    ND  + E  +++++DRK +K LFMPLIYGKT  SM  DI+ 
Sbjct: 659  LYSSLKDELVEYLLKTKCSNDYPQCEDFVKTQIDRKFVKRLFMPLIYGKTIMSMTNDIKL 718

Query: 102  KYGLLLSRKDSFNLAKLCIEFINHKYPDIINLMK 1
                 L  K  F +A  C+EF   K+PDI+NLMK
Sbjct: 719  YSERKLPYKAYFKIANDCLEFWRMKFPDIVNLMK 752


>ref|YP_005090412.1| orf2 gene product (mitochondrion) [Boea hygrometrica]
           gi|340549502|gb|AEK53323.1| hypothetical protein
           (mitochondrion) [Boea hygrometrica]
          Length = 585

 Score =  127 bits (319), Expect = 3e-27
 Identities = 71/201 (35%), Positives = 113/201 (56%), Gaps = 14/201 (6%)
 Frame = -2

Query: 585 IASSAAFKYKKFYLYDDALQWYKEKQSLIYAS---DESLISFAKDASDPFQFIAKVLCH- 418
           I  + +F YK      +A+ W+      I ++   D+ L   A +A   FQF+A +L   
Sbjct: 146 ICIATSFLYKSSISEKEAINWFLNIMDDINSNKNPDDYLFKKASEAKRSFQFLANMLILK 205

Query: 417 -----NRAYEYN----SNPISQDAASSAYQIMSYLLLNEDLARKTNIIPHS-DGQIQDVY 268
                +    YN    + P++QDA++SAYQIMSY LL+E +A +TN+IPH    +IQDVY
Sbjct: 206 DIKSISEIQNYNLFILNTPLTQDASASAYQIMSYFLLDESMAMRTNLIPHPCHNEIQDVY 265

Query: 267 IHLLNEFKDYLHKKINDTSKMEIIESKLDRKLIKSLFMPLIYGKTAYSMEMDIRDKYGLL 88
            ++L E K++++ ++ D +  + I   L RK+ K +FMP+IYGKT  S   D++      
Sbjct: 266 SYMLEELKEFINSELQDNNLSKTINGILTRKIAKGIFMPMIYGKTLMSTACDLKRDLSSF 325

Query: 87  LSRKDSFNLAKLCIEFINHKY 25
           ++ K+ F LA +C +F   KY
Sbjct: 326 ITNKECFELASICFKFWKTKY 346


>gb|AAS15052.1| DNA-directed RNA polymerase [Daucus carota]
          Length = 999

 Score =  119 bits (297), Expect = 9e-25
 Identities = 72/201 (35%), Positives = 118/201 (58%), Gaps = 10/201 (4%)
 Frame = -2

Query: 576  SAAFKYKKFYLYDDALQWYKE-KQSLIYASDESLISFAKDASDPFQFIAKVLCHNR---- 412
            +A+  Y+ F   DDA++W++E K +   A ++ LI FA DA  P QF++ V+        
Sbjct: 558  AASHLYRSFDNNDDAVEWFEEAKGTFEEAPNDLLIKFACDAKKPLQFLSCVVVFKEYSTT 617

Query: 411  --AYEYNSNPISQDAASSAYQIMSYLLLNEDLARKTNIIPH-SDGQIQDVYIHLLNEFKD 241
                   S PI+QDA++SAYQ+MSY LL++DLA+ TN+I    D  IQD+Y +LL E + 
Sbjct: 618  QDLQAITSYPITQDASASAYQLMSYFLLDKDLAKNTNLIQRPGDSNIQDIYSYLLKEVQV 677

Query: 240  YL--HKKINDTSKMEIIESKLDRKLIKSLFMPLIYGKTAYSMEMDIRDKYGLLLSRKDSF 67
            Y+  + K  + S +  +   L RK++K +FMP+IYGKT  S  + +++ +   L ++ + 
Sbjct: 678  YINDNDKYKNDSLILTVSDNLTRKIVKGIFMPMIYGKTLMSTGIFLQESFSFDLGKRQN- 736

Query: 66   NLAKLCIEFINHKYPDIINLM 4
             +A++  +F   KY  +  LM
Sbjct: 737  AVAQVFYDFFKVKYSRLNCLM 757


>dbj|BAD66791.1| orf598 [Beta vulgaris subsp. vulgaris]
          Length = 598

 Score =  116 bits (290), Expect = 6e-24
 Identities = 73/210 (34%), Positives = 121/210 (57%), Gaps = 18/210 (8%)
 Frame = -2

Query: 579 SSAAFKYKKFYLYDDAL----QWYKEKQSL--IYASDESLISFAKDASDPFQFIAKVLCH 418
           ++AA+ Y+ F   + AL    Q   + +    + +S+ +LI FAK A  PFQF+A +   
Sbjct: 226 TAAAYHYRSFTSDEAALCRISQLLHDLKGTDPLLSSEGTLIDFAKGAKHPFQFLANLRAI 285

Query: 417 NRAYEYN-----------SNPISQDAASSAYQIMSYLLLNEDLARKTNIIP-HSDGQIQD 274
               +             S+PI+QDA++SAYQI+SY LL++ LA++TN+IP   D +IQD
Sbjct: 286 VEVDKVQKKSPFTLDQILSSPITQDASASAYQILSYFLLDDTLAKRTNLIPMDGDDRIQD 345

Query: 273 VYIHLLNEFKDYLHKKINDTSKMEIIESKLDRKLIKSLFMPLIYGKTAYSMEMDIRDKYG 94
           VY H+  E K ++ +   + S  E +   + R L+KS+FMP+IYGK+  S   D+R    
Sbjct: 346 VYNHIEIELKSFIAR---EGSVPEEVFKDITRSLVKSIFMPIIYGKSQMSTADDLRGHLR 402

Query: 93  LLLSRKDSFNLAKLCIEFINHKYPDIINLM 4
            + ++K+ F++A LC +F   K+  + +L+
Sbjct: 403 SITTKKECFHIASLCFKFWKEKFAHMDHLI 432


>gb|AFI44306.1| RNA polymerase (mitochondrion) [Silene vulgaris]
          Length = 1053

 Score =  111 bits (277), Expect = 2e-22
 Identities = 74/223 (33%), Positives = 108/223 (48%), Gaps = 32/223 (14%)
 Frame = -2

Query: 576  SAAFKYKKFYLYDDA----LQWYKEKQSLI---YASDES------------LISFAKDAS 454
            + AF YKKF   D+A     +W     S I   Y  D              ++  ++DA 
Sbjct: 597  ATAFHYKKFNKEDEAQSFITEWMNNLNSKIENLYIKDNEDIEKNNKILYNLILQESRDAK 656

Query: 453  DPFQFIAKVLCHNRAYEYNSN-------------PISQDAASSAYQIMSYLLLNEDLARK 313
              FQFI+ +        YN               PI+QDA++SAYQIM+Y LL+E +A K
Sbjct: 657  RVFQFISNIYFLYNPIIYNKKDKENFMINAFQEIPITQDASASAYQIMAYFLLDEGMAMK 716

Query: 312  TNIIPHSDGQIQDVYIHLLNEFKDYLHKKINDTSKMEIIESKLDRKLIKSLFMPLIYGKT 133
            TN+I +    I D+Y     E  +Y+HK  ND    + +     RK++K++FMP+IYGKT
Sbjct: 717  TNLIINKLDWIIDIYEMFKEECLEYIHKNENDKHFCQTLSRVFTRKIVKNIFMPIIYGKT 776

Query: 132  AYSMEMDIRDKYGLLLSRKDSFNLAKLCIEFINHKYPDIINLM 4
              S   D+    G  L + + F LAKLC  F +  Y D+ + +
Sbjct: 777  VNSTGKDLHILLGNDLLKPECFKLAKLCYAFWHDTYNDMYSFI 819


>ref|YP_588388.1| hypothetical protein ZeamMp138 [Zea mays subsp. mays]
           gi|40795006|gb|AAR91050.1| hypothetical protein
           (mitochondrion) [Zea mays] gi|414871177|tpg|DAA49734.1|
           TPA: DNA-directed RNA polymerase [Zea mays]
          Length = 417

 Score =  106 bits (265), Expect = 5e-21
 Identities = 64/206 (31%), Positives = 114/206 (55%), Gaps = 14/206 (6%)
 Frame = -2

Query: 579 SSAAFKYKKFYL-YDDALQWY-----------KEKQSLIYASDESLISFAKDASDPFQFI 436
           +S AF Y K++  Y++ + W+             K  ++    + L + A+ A  PFQF+
Sbjct: 164 ASTAFHYSKYWKNYNEGIIWFIKNIHECPDLNSNKADIVL---DRLANLARKARHPFQFL 220

Query: 435 AKVLC--HNRAYEYNSNPISQDAASSAYQIMSYLLLNEDLARKTNIIPHSDGQIQDVYIH 262
           + V+   +  + +    PI  DA++SAYQ++SYLL N  +AR TN+I  ++ +I ++Y  
Sbjct: 221 SSVITLKNRDSDKIARTPIHLDASASAYQMLSYLLGNITMARNTNLISENN-KINNIYEI 279

Query: 261 LLNEFKDYLHKKINDTSKMEIIESKLDRKLIKSLFMPLIYGKTAYSMEMDIRDKYGLLLS 82
           + ++FK Y+ +K  +      + S  DR +IK++FMP++YGK+ +S  +D+  K G  + 
Sbjct: 280 IDSDFKKYIERKYGEHIITRYVCSLFDRDIIKNIFMPIVYGKSKFSTAIDLLGKIGSYMV 339

Query: 81  RKDSFNLAKLCIEFINHKYPDIINLM 4
            +D   + K C  F   +Y D+ NLM
Sbjct: 340 VEDLKTIIKECYNFWESEYKDMRNLM 365


>gb|EPS74139.1| hypothetical protein M569_00616, partial [Genlisea aurea]
          Length = 343

 Score =  105 bits (262), Expect = 1e-20
 Identities = 51/81 (62%), Positives = 69/81 (85%)
 Frame = -2

Query: 486 ESLISFAKDASDPFQFIAKVLCHNRAYEYNSNPISQDAASSAYQIMSYLLLNEDLARKTN 307
           ++LIS AK ASDPFQFIAKV+C +    Y+  PISQDA++SAYQIMSY LLNE++AR+TN
Sbjct: 130 DTLISLAKGASDPFQFIAKVICKDNLDFYH--PISQDASASAYQIMSYFLLNEEMARRTN 187

Query: 306 IIPHSDGQIQDVYIHLLNEFK 244
           +I +SDG+IQD+Y ++L++FK
Sbjct: 188 LIQNSDGKIQDIYTNILSDFK 208


>emb|CAQ52964.1| unnamed protein product [Lolium perenne]
          Length = 1284

 Score =  105 bits (262), Expect = 1e-20
 Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 18/215 (8%)
 Frame = -2

Query: 591  DIIASSAAFKYKKFYLYDDALQWYKEK----------QSLIYASDESLISFAKDASDPFQ 442
            D   ++ +F + K+  Y  A +W++ K           +  +  D  ++S    A  PFQ
Sbjct: 756  DCFYAATSFHFHKWMDYPSATEWFRTKLEKWDKGKPLSNENFTEDTDILSLLNQAKSPFQ 815

Query: 441  FIAKVLCH----NRAYEYNSNPISQDAASSAYQIMSYLLLNEDLARKTNIIPHSDGQIQD 274
            F+A   CH       Y     PI+QDA++SAYQI+S+  L+  +   TN+I     +I D
Sbjct: 816  FLAG--CHAARTKDTYTMKHIPITQDASASAYQILSFFFLDLRMGMHTNLI--GSNEIND 871

Query: 273  VYIHLLNEFKDYLH----KKINDTSKMEIIESKLDRKLIKSLFMPLIYGKTAYSMEMDIR 106
            +Y  LL++ + Y      ++  D   + II +  DRK++K+++MP+IYGKT  S   D  
Sbjct: 872  IYDCLLHQLRCYTTTIPIQENVDMHALNIINTVFDRKIMKNIYMPIIYGKTKNSTRDDFI 931

Query: 105  DKYGLLLSRKDSFNLAKLCIEFINHKYPDIINLMK 1
             K G          L ++C +F +H Y D+ NLM+
Sbjct: 932  KKIGHNRDYATINKLVEICFQFWDHYYKDVNNLME 966


>emb|CAQ52970.1| unnamed protein product [Lolium perenne]
          Length = 1272

 Score =  103 bits (257), Expect = 4e-20
 Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 18/215 (8%)
 Frame = -2

Query: 591  DIIASSAAFKYKKFYLYDDALQWYKEK----------QSLIYASDESLISFAKDASDPFQ 442
            D   ++ +F   K+  Y  A +W++ K           +  +  D  ++S    A  PFQ
Sbjct: 744  DCFYAATSFHLHKWKDYPSATEWFRTKLEKWDKGKPLSNKNFTEDTDILSLLNQAKSPFQ 803

Query: 441  FIAKVLCH----NRAYEYNSNPISQDAASSAYQIMSYLLLNEDLARKTNIIPHSDGQIQD 274
            F+A   CH       Y     PI+QDA++SAYQI+S+  L+  +   TN+I     +I D
Sbjct: 804  FLAG--CHAARTKDTYTMKHIPITQDASASAYQILSFFFLDLRMGMHTNLI--GSNEIND 859

Query: 273  VYIHLLNEFKDY---LHKKIN-DTSKMEIIESKLDRKLIKSLFMPLIYGKTAYSMEMDIR 106
            +Y  LL++ + Y   +  + N D   + II +  DRK++K+++MP+IYGKT  S   D  
Sbjct: 860  IYDCLLHQLRCYTTTIPIQANVDMHALNIINTVFDRKIMKNIYMPIIYGKTKKSTRDDFI 919

Query: 105  DKYGLLLSRKDSFNLAKLCIEFINHKYPDIINLMK 1
             K G          L ++C +F +H Y D+ NLM+
Sbjct: 920  KKIGHNRDYATINKLVEICFQFWDHYYKDVNNLME 954


>emb|CAQ52967.1| unnamed protein product [Lolium perenne]
          Length = 1272

 Score =  100 bits (249), Expect = 3e-19
 Identities = 64/213 (30%), Positives = 106/213 (49%), Gaps = 16/213 (7%)
 Frame = -2

Query: 591  DIIASSAAFKYKKFYLYDDALQWYKEK----------QSLIYASDESLISFAKDASDPFQ 442
            D   ++ +F + K+  Y  A +W++ K           +  +  +  ++S    A  PFQ
Sbjct: 744  DCFYAATSFHHHKWKDYPSATEWFRTKLVQWDKGKPLSNENFTENTDILSLLNQAKSPFQ 803

Query: 441  FIA--KVLCHNRAYEYNSNPISQDAASSAYQIMSYLLLNEDLARKTNIIPHSDGQIQDVY 268
            F+A  +       Y     PI+QDA++SAYQI+S+  L+  +   TN+I     +I D+Y
Sbjct: 804  FLAGCQAARTKDTYTMKHIPITQDASASAYQILSFFFLDLRMGMHTNLI--GSNEINDIY 861

Query: 267  IHLLNEFKDYLHKKIN----DTSKMEIIESKLDRKLIKSLFMPLIYGKTAYSMEMDIRDK 100
              LL++ + Y     N    D   + II +  DRK++K+++MP+IYGKT  S   D   K
Sbjct: 862  DCLLHQLRYYSTTIPNQENVDKHALNIINTVFDRKIMKNIYMPIIYGKTKKSTRDDFIKK 921

Query: 99   YGLLLSRKDSFNLAKLCIEFINHKYPDIINLMK 1
             G          L ++C +F +H Y D+ NLM+
Sbjct: 922  IGHDRDIATINKLVEICFQFWDHYYNDVNNLME 954


>gb|AFI44277.1| RNA polymerase (mitochondrion) [Silene vulgaris]
          Length = 371

 Score = 99.8 bits (247), Expect = 6e-19
 Identities = 56/135 (41%), Positives = 80/135 (59%), Gaps = 6/135 (4%)
 Frame = -2

Query: 390 PISQDAASSAYQIMSYLLLNEDLARKTNIIPHSDGQIQDVYIHLLNEFKDYLHKKINDTS 211
           PI+QDA++SAYQIM+Y LL+E +A KTN+I +    I D+Y     E  +Y+HK  +D  
Sbjct: 9   PITQDASASAYQIMAYFLLDETMAMKTNLIINKFDWIVDIYEMFKEECLEYIHKNESDKH 68

Query: 210 KMEIIESKLDRKLIKSLFMPLIYGKTAYSMEMDIRDKYGLLLSRKDSFNLAKLCIEF--- 40
             + +     RK++K++FMP+IYGKT  S   D+    G  L + + F LAKLC  F   
Sbjct: 69  FCQTLSRVFTRKIVKNIFMPIIYGKTVNSTGKDLHILLGNDLLKPECFKLAKLCYAFWHD 128

Query: 39  -INHKYP--DIINLM 4
             NH Y   D+I L+
Sbjct: 129 TYNHMYSFIDLIGLV 143


>emb|CAA71809.1| RNA polymerase [Beta vulgaris subsp. maritima]
          Length = 1014

 Score = 90.9 bits (224), Expect = 3e-16
 Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 7/161 (4%)
 Frame = -2

Query: 486  ESLISFAKDASDPFQFIAKVLCHNRAYE-----YNSNPISQDAASSAYQIMSYLLLNEDL 322
            +SL+  A+ A   FQF++  L   +          + P++QDA++SAYQIMSY LL+E+L
Sbjct: 612  QSLVIDAQSAKRQFQFLSNTLLLLKVVPDDIEVMKTVPVTQDASASAYQIMSYFLLDEEL 671

Query: 321  ARKTNIIPHSDGQIQDVYIHLLNEFKDYLHKKI--NDTSKMEIIESKLDRKLIKSLFMPL 148
            A +TN+  +++G I D+Y ++  +   YL   I   +     I+   + R ++K +FMP+
Sbjct: 672  AFQTNLF-NTNGIINDIYSYIRLDLIQYLEDSIRFENPQLCNILNRVITRSIVKKIFMPI 730

Query: 147  IYGKTAYSMEMDIRDKYGLLLSRKDSFNLAKLCIEFINHKY 25
            IYGKT  S   D+    G  +  K+   L+ LC +F   +Y
Sbjct: 731  IYGKTVNSTTKDLMISLGQDVLPKECVKLSTLCFKFWKDRY 771


>ref|YP_588349.1| hypothetical protein ZeamMp088 [Zea mays subsp. mays]
            gi|40794997|gb|AAR91041.1| hypothetical protein
            (mitochondrion) [Zea mays]
          Length = 1159

 Score = 80.5 bits (197), Expect = 4e-13
 Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 30/199 (15%)
 Frame = -2

Query: 576  SAAFKYKKFYLYDDALQWYKEKQSLIYASDESLISFAKD-------ASDPFQFIAKVLCH 418
            SAA+   KF +Y DA+++  +   +I         F KD          PFQ+I+  +  
Sbjct: 648  SAAYHKSKFGVYQDAMEFISK---IIPDMVSKPTFFEKDIFMDTLCCRHPFQYISSCISL 704

Query: 417  NRAYEYNS------NPISQDAASSAYQIMSYLLLNEDLARKTNII--PHSDGQ-IQDVYI 265
                +          P+SQDA++SAYQ+MSY LL+ D    TN++  P++DG+ I+D+Y 
Sbjct: 705  KTYADTGDLSVLRYTPVSQDASASAYQMMSYFLLDIDYGIHTNLLKTPNTDGRYIRDIYE 764

Query: 264  HLLNEFKDYL--HKKI------------NDTSKMEIIESKLDRKLIKSLFMPLIYGKTAY 127
             + +   +YL   +KI            +  S +  I S  DR ++K +FMP++YGKT Y
Sbjct: 765  FMRDCLINYLIAEEKIELVIKLLTRNEKDQESVLAKIVSIFDRNVVKKMFMPMMYGKTDY 824

Query: 126  SMEMDIRDKYGLLLSRKDS 70
            +++ D+ D   LL  + DS
Sbjct: 825  TLKKDVED---LLKGKSDS 840


>pir||S22768 130K protein - maize mitochondrial plasmid-like DNA S-2
          Length = 1159

 Score = 76.3 bits (186), Expect = 7e-12
 Identities = 62/196 (31%), Positives = 100/196 (51%), Gaps = 27/196 (13%)
 Frame = -2

Query: 576  SAAFKYKKFYLYDDALQWYKEK----QSLIYASDESLISFAKDASDPFQFIAKVLCHNRA 409
            SAA+   KF +Y +AL++   K    QS     ++ +         PFQ+I+  +     
Sbjct: 648  SAAYHKSKFGVYREALEFIYNKIEDMQSKPTFFEKDIFVDTLCCRHPFQYISSCISLKTY 707

Query: 408  YEYNS------NPISQDAASSAYQIMSYLLLNEDLARKTNIIP--HSDGQ-IQDVYI--- 265
             +          P+ QDA++SAYQIMSY LL+ D    TN++   ++DG+ I+D+Y    
Sbjct: 708  ADTKDLSVLRYTPVFQDASASAYQIMSYFLLDIDYGIHTNLLKKTNTDGRYIRDIYEFMR 767

Query: 264  -----HLLNEFKDYLHKKI------NDTSKMEIIESKLDRKLIKSLFMPLIYGKTAYSME 118
                 +L+ E K  L  K+      +  S +  I S  DR ++K +FMP++YGKT Y+++
Sbjct: 768  GCLIKYLIAEEKIELAIKLLTPNEKDQESVLAKIVSIFDRNVVKKMFMPMMYGKTDYTLK 827

Query: 117  MDIRDKYGLLLSRKDS 70
             D+ D   LL  + DS
Sbjct: 828  KDVED---LLKGKSDS 840


>sp|P10581.1|RPOP_MAIZE RecName: Full=Probable DNA-directed RNA polymerase; AltName: Full=S-2
            DNA ORF1
          Length = 1098

 Score = 76.3 bits (186), Expect = 7e-12
 Identities = 62/196 (31%), Positives = 100/196 (51%), Gaps = 27/196 (13%)
 Frame = -2

Query: 576  SAAFKYKKFYLYDDALQWYKEK----QSLIYASDESLISFAKDASDPFQFIAKVLCHNRA 409
            SAA+   KF +Y +AL++   K    QS     ++ +         PFQ+I+  +     
Sbjct: 587  SAAYHKSKFGVYREALEFIYNKIEDMQSKPTFFEKDIFVDTLCCRHPFQYISSCISLKTY 646

Query: 408  YEYNS------NPISQDAASSAYQIMSYLLLNEDLARKTNIIP--HSDGQ-IQDVYI--- 265
             +          P+ QDA++SAYQIMSY LL+ D    TN++   ++DG+ I+D+Y    
Sbjct: 647  ADTKDLSVLRYTPVFQDASASAYQIMSYFLLDIDYGIHTNLLKKTNTDGRYIRDIYEFMW 706

Query: 264  -----HLLNEFKDYLHKKI------NDTSKMEIIESKLDRKLIKSLFMPLIYGKTAYSME 118
                 +L+ E K  L  K+      +  S +  I S  DR ++K +FMP++YGKT Y+++
Sbjct: 707  GCLIKYLIAEEKIELAIKLLTPNEKDQESVLAKIVSIFDRNVVKKMFMPMMYGKTDYTLK 766

Query: 117  MDIRDKYGLLLSRKDS 70
             D+ D   LL  + DS
Sbjct: 767  KDVED---LLKGKSDS 779


>ref|NP_064083.1| orf352 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
           gi|323435105|ref|YP_004222323.1| hypothetical protein
           BevumaM_p088 [Beta vulgaris subsp. maritima]
           gi|346683197|ref|YP_004842129.1| hypothetical protein
           BemaM_p084 [Beta macrocarpa] gi|9087332|dbj|BAA99476.1|
           orf352 [Beta vulgaris subsp. vulgaris]
           gi|317905659|emb|CBJ14055.1| hypothetical protein [Beta
           vulgaris subsp. maritima] gi|319439838|emb|CBJ17546.1|
           hypothetical protein [Beta vulgaris subsp. maritima]
           gi|345500115|emb|CBX24933.1| hypothetical protein [Beta
           macrocarpa] gi|384939139|emb|CBL51986.1| hypothetical
           protein (mitochondrion) [Beta vulgaris subsp. maritima]
          Length = 352

 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 47/125 (37%), Positives = 73/125 (58%), Gaps = 18/125 (14%)
 Frame = -2

Query: 579 SSAAFKYKKFYLYDDAL----QWYKEKQSL--IYASDESLISFAKDASDPFQFIAKVLCH 418
           ++AA+ Y+ F   + AL    Q   + +    + +S+ +LI FAK A  PFQF+A +   
Sbjct: 226 TAAAYHYRSFTSDEAALCRISQLLHDLKGTDPLLSSEGTLIDFAKGAKHPFQFLANLRAI 285

Query: 417 NRAYEYN-----------SNPISQDAASSAYQIMSYLLLNEDLARKTNIIP-HSDGQIQD 274
               +             S+PI+QDA++SAYQI+SY LL++ LA++TN+IP   D +IQD
Sbjct: 286 VEVDKVQKKSPFTLDQILSSPITQDASASAYQILSYFLLDDTLAKRTNLIPMDGDDRIQD 345

Query: 273 VYIHL 259
           VY H+
Sbjct: 346 VYNHI 350


>emb|CBJ20748.1| hypothetical protein [Beta vulgaris subsp. maritima]
          Length = 352

 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 47/125 (37%), Positives = 73/125 (58%), Gaps = 18/125 (14%)
 Frame = -2

Query: 579 SSAAFKYKKFYLYDDAL----QWYKEKQSL--IYASDESLISFAKDASDPFQFIAKVLCH 418
           ++AA+ Y+ F   + AL    Q   + +    + +S+ +LI FAK A  PFQF+A +   
Sbjct: 226 TAAAYHYRSFTSDEAALCRISQLLHDLKGTDPLLSSEGTLIDFAKGAKHPFQFLANLRAI 285

Query: 417 NRAYEYN-----------SNPISQDAASSAYQIMSYLLLNEDLARKTNIIP-HSDGQIQD 274
               +             S+PI+QDA++SAYQI+SY LL++ LA++TN+IP   D +IQD
Sbjct: 286 VEVDKVQKKSPFTLDQILSSPITQDASASAYQILSYFLLDDTLAKRTNLIPMDGDDRIQD 345

Query: 273 VYIHL 259
           VY H+
Sbjct: 346 VYNHI 350


>ref|NP_064020.1| orf348 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
           gi|9838498|ref|NP_064110.1| orf348 gene product
           (mitochondrion) [Beta vulgaris subsp. vulgaris]
           gi|323435080|ref|YP_004222298.1| hypothetical protein
           BevumaM_p060 [Beta vulgaris subsp. maritima]
           gi|323435134|ref|YP_004222352.1| hypothetical protein
           BevumaM_p119 [Beta vulgaris subsp. maritima]
           gi|346683171|ref|YP_004842103.1| hypothetical protein
           BemaM_p056 [Beta macrocarpa]
           gi|346683225|ref|YP_004842157.1| hypothetical protein
           BemaM_p113 [Beta macrocarpa] gi|9049321|dbj|BAA99331.1|
           orf348 [Beta vulgaris subsp. vulgaris]
           gi|9087360|dbj|BAA99504.1| orf348 [Beta vulgaris subsp.
           vulgaris] gi|54606797|dbj|BAD66820.1| orf348 [Beta
           vulgaris subsp. vulgaris] gi|317905585|emb|CBJ13997.1|
           hypothetical protein [Beta vulgaris subsp. maritima]
           gi|317905633|emb|CBJ14033.1| hypothetical protein [Beta
           vulgaris subsp. maritima] gi|319439813|emb|CBJ17524.1|
           hypothetical protein [Beta vulgaris subsp. maritima]
           gi|319439867|emb|CBJ17572.1| hypothetical protein [Beta
           vulgaris subsp. maritima] gi|320148019|emb|CBJ20685.1|
           hypothetical protein [Beta vulgaris subsp. maritima]
           gi|345500089|emb|CBX24905.1| hypothetical protein [Beta
           macrocarpa] gi|345500143|emb|CBX24962.1| hypothetical
           protein [Beta macrocarpa]
          Length = 348

 Score = 71.2 bits (173), Expect = 2e-10
 Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
 Frame = -2

Query: 291 DGQIQDVYIHLLNEFKDYLHKKINDTSKMEIIESKLDRKLIKSLFMPLIYGKTAYSMEMD 112
           D +I+DVY+H++ + K ++ K+    S +++    +DRKL+KS+FMP+IYGKT  S   D
Sbjct: 4   DQRIEDVYVHIMEDLKSFIDKEDLPESFVKLFNKFIDRKLVKSIFMPIIYGKTQMSTAED 63

Query: 111 IRD--KYGLLLSRKDSFNLAKLCIEFINHKYPDIINLMK 1
           I+   K     + K+SF LA  C +F    Y ++ NL++
Sbjct: 64  IKMALKPYFYPAFKESFLLASPCFKFWREYYTEMENLIR 102