BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00015778
         (2312 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma ...   637   e-180
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   636   e-179
ref|XP_002305685.1| plus-3 domain-containing family protein [Pop...   624   e-176
ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prun...   624   e-176
gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote...   622   e-175
ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein...   620   e-175
ref|XP_002316628.2| plus-3 domain-containing family protein [Pop...   619   e-174
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   617   e-174
ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein...   616   e-173
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   610   e-172
ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phas...   599   e-168
gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana]               597   e-168
ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis th...   595   e-167
ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein...   590   e-166
ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citr...   589   e-165
ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Caps...   589   e-165
ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp....   588   e-165
ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutr...   586   e-164
ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein...   576   e-161
ref|XP_004493842.1| PREDICTED: RNA polymerase-associated protein...   561   e-157

>ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma cacao]
            gi|590624750|ref|XP_007025692.1| PAF1 complex component
            isoform 1 [Theobroma cacao] gi|508781057|gb|EOY28313.1|
            PAF1 complex component isoform 1 [Theobroma cacao]
            gi|508781058|gb|EOY28314.1| PAF1 complex component
            isoform 1 [Theobroma cacao]
          Length = 660

 Score =  637 bits (1643), Expect = e-180
 Identities = 357/665 (53%), Positives = 418/665 (62%), Gaps = 8/665 (1%)
 Frame = +3

Query: 213  MADLENLLLEXXXXXXXXXXXXPSHPQSKRRREDQYXXXXXXXXXXXXXXXHGYSNRKPS 392
            MADLENLLLE             S P S+RRRE  Y               HGY++RKPS
Sbjct: 1    MADLENLLLEAAGRTGTGGRNRHSLPPSRRRREGSYSDGGSDSRDDDSDDDHGYASRKPS 60

Query: 393  GSQVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VGSDLYKDEDDRQQLAQ 566
            GSQVPLKKRL+P                               VG DLYK+EDDR++LAQ
Sbjct: 61   GSQVPLKKRLDPAERDDDQGSQEEGDYDDGVSVHEGDSSDESDVGDDLYKNEDDRRKLAQ 120

Query: 567  LSELDREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXXX 746
            ++EL+RE+ILS+RA K+ DK F EK+R KR++ +    ++SRK+TPPL            
Sbjct: 121  MTELERELILSERADKRGDKKFTEKIRSKRENDRP---SRSRKETPPLPSSRGVRSSARS 177

Query: 747  XXXXXXXXXXLNELRAKRLKQQDPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXXX 926
                      LNELRAKRLKQQDPEAHRKL +A           P KRK F         
Sbjct: 178  ADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRGLSPVKRKPFTASSLSSSS 237

Query: 927  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSEP 1106
                                            P+   PTF +IKEITIRRSKLAKW  EP
Sbjct: 238  QSDSESRSNSEDEGSTGDGGMVDSDDDRGMQGPDG--PTFDDIKEITIRRSKLAKWFMEP 295

Query: 1107 FFEDLIVGCFVRVGIGKSKSGPIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNEN 1286
            FFE+LIVGC+VRVGIG+SKSGPIYRLC+VRNVD+++P+R YKLEN+TT+K+LN VWGNE+
Sbjct: 296  FFEELIVGCYVRVGIGRSKSGPIYRLCMVRNVDATEPERTYKLENKTTYKYLNVVWGNES 355

Query: 1287 SAARWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAETV 1466
            SAARWQMAM+SDS P EEE+ Q +RE+ERS G+MPSKQDV  KKEA+Q   TFVYSA TV
Sbjct: 356  SAARWQMAMISDSPPQEEEFRQLIRELERSGGRMPSKQDVLEKKEALQKAKTFVYSAATV 415

Query: 1467 KQMLQEKKSSTSRPLNIAAEKDRLRGELMAAESVQEQ---ERIKAKLLQLEASRKTNVKD 1637
            KQMLQEKKS++SRPLNIAAEKDRLR +L  A+S  ++   ERIK +L QLEASR+   KD
Sbjct: 416  KQMLQEKKSTSSRPLNIAAEKDRLRRDLEIAQSKHDEAEVERIKMRLQQLEASRQAQEKD 475

Query: 1638 HKALKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKPXXXX 1817
             KA++LAEMNRKNRAENFKNAS++KP N GLKAGEAGYDPFSRRWTRSRNYY++KP    
Sbjct: 476  AKAVRLAEMNRKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVAKPPGAD 535

Query: 1818 XXXXXXXXXXXXXXDMNIDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGTEMNS 1997
                            N +                           DTSAPVD GTE N 
Sbjct: 536  AAAVANGDRIGVIASGNGNDARAAAEAGRAATVAALQEAAGAGKLVDTSAPVDEGTESNM 595

Query: 1998 LHLFELDITLTDLHKFGGPQ---AAFMARKQMIEATVGCKVPEDDGRRHALTLTVSDYKR 2168
            LH FE+ I+L  L +FGGPQ   A FMARKQ IEATVGC+VPE+DGRRHALTLTVSDYKR
Sbjct: 596  LHDFEIPISLNALQRFGGPQGAVAGFMARKQRIEATVGCQVPENDGRRHALTLTVSDYKR 655

Query: 2169 RRGLL 2183
            RRGLL
Sbjct: 656  RRGLL 660


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  636 bits (1640), Expect = e-179
 Identities = 358/667 (53%), Positives = 422/667 (63%), Gaps = 10/667 (1%)
 Frame = +3

Query: 213  MADLENLLLEXXXXXXXXXXXXPSHPQSKRRREDQYXXXXXXXXXXXXXXXHGYSNRKPS 392
            MADLENLLLE             + P S+RRRE  Y                GYS+RKPS
Sbjct: 1    MADLENLLLEAAGRTGTSGRNRNALPPSRRRREGSYSDGGSDSRDDDSDDDRGYSSRKPS 60

Query: 393  GSQVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VGSDLYKDEDDRQQLAQ 566
            GSQVPLKKRL+P                               VG DLYK+EDDR++LAQ
Sbjct: 61   GSQVPLKKRLDPTERDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKLAQ 120

Query: 567  LSELDREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXXX 746
            +SEL+REMILS+RA KK DK+  E++R KR+S +   TT+SRK+TPPL            
Sbjct: 121  MSELEREMILSERADKKGDKNLTERIRSKRESER---TTRSRKETPPLPSSRGVRTSARS 177

Query: 747  XXXXXXXXXXLNELRAKRLKQQDPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXXX 926
                      LNEL+A+RLKQQDPEAHRKL +A           P KRK F         
Sbjct: 178  ADRAAAKDDALNELKARRLKQQDPEAHRKLRDASRRGSGSRGFSPIKRKRFTSASLSSSS 237

Query: 927  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSEP 1106
                                           +P S  PTF +I+EITIRRSKLAKW  EP
Sbjct: 238  SESESRSHSEDEGSTGDGGMADSDDDG----EPGSQGPTFDDIREITIRRSKLAKWFMEP 293

Query: 1107 FFEDLIVGCFVRVGIGKSKSGPIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNEN 1286
            +FE+LIVGCFVRVGIG+SKSGPIYRLC+VRNVD++DPDR YKLEN+TT+K+LN +WGNE+
Sbjct: 294  WFEELIVGCFVRVGIGRSKSGPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNES 353

Query: 1287 SAARWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAETV 1466
            SAARWQMAM+SDSAP E+EY QWVREVERS G+MP+KQD+  KKEAI+ +NTFVYSA TV
Sbjct: 354  SAARWQMAMISDSAPTEDEYKQWVREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATV 413

Query: 1467 KQMLQEKKSSTSRPLNIAAEKDRLRGELMAAESVQ---EQERIKAKLLQLEASRKTNVKD 1637
            KQMLQEKKS++SRPLN+AAEKDRLR EL  A+S Q   E ERI+A++ +LEASR+T  KD
Sbjct: 414  KQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSKQDDAEVERIRARIQELEASRQTQGKD 473

Query: 1638 HKALKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKPXXXX 1817
             KA++LAEMNRKNRAENF+NAS++KP N  LKAGEAGYDPFSRRWTRSRNYY+SKP    
Sbjct: 474  AKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPAGGD 533

Query: 1818 XXXXXXXXXXXXXXDMN--IDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGTEM 1991
                            N                               DT+APVD+GTE 
Sbjct: 534  AAAATNNEASGTVAVANKTESAAGVSAEAGMAATAAALEAAADAGKLVDTAAPVDQGTES 593

Query: 1992 NSLHLFELDITLTDLHKFG---GPQAAFMARKQMIEATVGCKVPEDDGRRHALTLTVSDY 2162
            N+LH FEL I+LT L KFG   G QA FMARKQ IEAT+GC+V E+D +RH LTLTVSDY
Sbjct: 594  NTLHNFELPISLTALQKFGGAQGAQAGFMARKQRIEATIGCRVSENDEKRHVLTLTVSDY 653

Query: 2163 KRRRGLL 2183
            KRRRGLL
Sbjct: 654  KRRRGLL 660


>ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|222848649|gb|EEE86196.1| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 662

 Score =  624 bits (1609), Expect = e-176
 Identities = 351/669 (52%), Positives = 416/669 (62%), Gaps = 12/669 (1%)
 Frame = +3

Query: 213  MADLENLLLEXXXXXXXXXXXXPSH-PQSKRRREDQYXXXXXXXXXXXXXXXHGYSNRKP 389
            MADLENLLLE             S  P  +R+RE  Y                GY+NRKP
Sbjct: 1    MADLENLLLEAAGRTGKSGRNRNSILPSRRRKREGSYSDGGSDSRDDDSDDDRGYANRKP 60

Query: 390  SGSQVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VGSDLYKDEDDRQQLA 563
            SGSQVPLKKRLE                                +G DLYKDEDDR++LA
Sbjct: 61   SGSQVPLKKRLETNERDGEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDEDDRKKLA 120

Query: 564  QLSELDREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXX 743
            Q+SELDRE+IL+DRA KK DKH  EK+RLKRD+ K    T+SRK+TPPL           
Sbjct: 121  QMSELDRELILADRADKKGDKHLTEKIRLKRDNDKP---TRSRKETPPLPSSRGVRSSAR 177

Query: 744  XXXXXXXXXXXLNELRAKRLKQQDPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXX 923
                       LNELRAKRLKQQDPEAHRKL +              K+ +F        
Sbjct: 178  SADRAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSAGSRGFSQVKKNNFTSASLSSS 237

Query: 924  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSE 1103
                                            +P S  PT+++IKEITIRR+KLAKW  E
Sbjct: 238  SSESGSRSHSEDEGSTGDGGMADSDEDV----EPGSKGPTYEDIKEITIRRTKLAKWFME 293

Query: 1104 PFFEDLIVGCFVRVGIGKSKSGPIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNE 1283
            P+FE+LI+GCFVRVGIG+SKSGP+YRLC+VRNVD+++PD+ YKLEN++T+K+LN  WG +
Sbjct: 294  PWFEELIIGCFVRVGIGRSKSGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGAD 353

Query: 1284 NSAARWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAET 1463
             SAARWQMAMVSDS P EEEY QWVREVE   G++PSKQD+  KKEAI+ +NTFVYSA T
Sbjct: 354  TSAARWQMAMVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAAT 413

Query: 1464 VKQMLQEKKSSTSRPLNIAAEKDRLRGELMAAESVQEQ---ERIKAKLLQLEASRKTNVK 1634
            VKQMLQEKKS++SRPLN+AAEKDRLR EL  A+S  ++   ERI A++ +LEASR   VK
Sbjct: 414  VKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERINARIEELEASRHAKVK 473

Query: 1635 DHKALKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKPXXX 1814
            D KA++LAEMNRKNR ENF+NAS+MKP N GLKAGEAGYDPFSRRWTRSRNYY+SKP   
Sbjct: 474  DAKAIRLAEMNRKNRVENFRNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPAEA 533

Query: 1815 XXXXXXXXXXXXXXXDM---NIDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGT 1985
                            +   N  +                          DTSAPVD+GT
Sbjct: 534  DDPVATKISEANETVAVAASNQVVAGVMSEAGVAATEAALEAAADAGKLVDTSAPVDQGT 593

Query: 1986 EMNSLHLFELDITLTDLHKFGGP---QAAFMARKQMIEATVGCKVPEDDGRRHALTLTVS 2156
            E N++H FEL+I+L  L +FGGP   QA FMARKQ IEATVGC+VPE+DGRRHALTLTV 
Sbjct: 594  ESNTMHSFELEISLIALQEFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVG 653

Query: 2157 DYKRRRGLL 2183
            DYKRRRGLL
Sbjct: 654  DYKRRRGLL 662


>ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
            gi|462413781|gb|EMJ18830.1| hypothetical protein
            PRUPE_ppa002666mg [Prunus persica]
          Length = 646

 Score =  624 bits (1608), Expect = e-176
 Identities = 363/666 (54%), Positives = 408/666 (61%), Gaps = 9/666 (1%)
 Frame = +3

Query: 213  MADLENLLLEXXXXXXXXXXXXPSHPQSKRRREDQYXXXXXXXXXXXXXXXHGYSNRKPS 392
            MADLENLLLE             SH  S+RRR   Y                GY++RKPS
Sbjct: 1    MADLENLLLEAAGRTSSAGKSRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKPS 60

Query: 393  GSQVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VGSDLYKDEDDRQQLAQL 569
            G+QVPLKKRL+P                              VGSDLYKDEDDR++LA++
Sbjct: 61   GTQVPLKKRLDPTEMDDEQGSQEEGDYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAEM 120

Query: 570  SELDREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXXXX 749
            SEL RE+ILSDRA KKDDK   EK R K             K+TPPL             
Sbjct: 121  SELQRELILSDRAQKKDDKSLKEKFRPK-------------KETPPLPSSRVRSSARSAD 167

Query: 750  XXXXXXXXXLNELRAKRLKQQDPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXXXX 929
                     LNELRAKRLKQQDPEAHRKL +A              RKSF          
Sbjct: 168  RAAAKDDA-LNELRAKRLKQQDPEAHRKLRDASRGSSGSRSFSHMTRKSFTAVGRSSSSQ 226

Query: 930  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSEPF 1109
                                          + E L  TF +IKEITIRRSKLAKWL EPF
Sbjct: 227  SDSDSRSHSEDDGSTGEDPMMDSDDE----RSEGL--TFDDIKEITIRRSKLAKWLMEPF 280

Query: 1110 FEDLIVGCFVRVGIGKSKSGPIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNENS 1289
            FE+LIVGCFVRVGIG+SKSGPIYRLC+VRNVD+SDPDR+YKLEN+TTHK+LN VWGNENS
Sbjct: 281  FEELIVGCFVRVGIGRSKSGPIYRLCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENS 340

Query: 1290 AARWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAETVK 1469
            AARWQMAM+SDSAPLEEE+ QWVREVERS G++PSKQDV  KKEAI+  NTFVYSA TVK
Sbjct: 341  AARWQMAMISDSAPLEEEFKQWVREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVK 400

Query: 1470 QMLQEKKSSTSRPLNIAAEKDRLRGELMAAESVQ---EQERIKAKLLQLEASRKTNVKDH 1640
            QM++EKKS++SRPLNIA EKDRLR EL  A+S     E ERIK +L QLEA R++  KD 
Sbjct: 401  QMIEEKKSASSRPLNIALEKDRLRRELEVAQSKHDDAEVERIKTRLQQLEARRQSQGKDS 460

Query: 1641 KALKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKPXXXXX 1820
            KA++LAEMNRKNR ENFKNAS++KP   GLKAGEAGYDPFSRRWTRSRNYY+SKP     
Sbjct: 461  KAVRLAEMNRKNRVENFKNASELKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKG 520

Query: 1821 XXXXXXXXXXXXXDM--NIDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGTEMN 1994
                         D+  N                             DTSAPVD GTE N
Sbjct: 521  EAEAIVDADGALADIESNGTAVVGAVRAGMAATAAALEAAAGAGKLIDTSAPVDFGTESN 580

Query: 1995 SLHLFELDITLTDLHKFGGPQAA---FMARKQMIEATVGCKVPEDDGRRHALTLTVSDYK 2165
             +H FEL I+L  L KFGGPQ A   F+ARKQ IEATVGC+VPE+DGRRHALTLTVSDYK
Sbjct: 581  LMHNFELPISLATLQKFGGPQGAQEGFLARKQRIEATVGCRVPENDGRRHALTLTVSDYK 640

Query: 2166 RRRGLL 2183
            RR GLL
Sbjct: 641  RRMGLL 646


>gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus notabilis]
          Length = 658

 Score =  622 bits (1604), Expect = e-175
 Identities = 357/665 (53%), Positives = 411/665 (61%), Gaps = 8/665 (1%)
 Frame = +3

Query: 213  MADLENLLLEXXXXXXXXXXXXPSHPQSKRRREDQYXXXXXXXXXXXXXXXHGYSNRKPS 392
            MA+LENLLLE             S P S+RRRE  Y                GY+NRKPS
Sbjct: 1    MAELENLLLEAAGRTRSAGRNRHSIPPSRRRREGSYSDGGSDSRDDDSDDDRGYANRKPS 60

Query: 393  GSQVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSDLYKDEDDRQQLAQLS 572
            GSQVPLKKRL+P                             VGSDLYKD+DDR++LA+++
Sbjct: 61   GSQVPLKKRLDPTEMDDDQGSEEEGDDDRGSDREGDSESD-VGSDLYKDDDDRRKLAEMT 119

Query: 573  ELDREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXXXXX 752
            EL REMIL DRASKK+DK+  EKLR K D+  K   TQSRK+TP                
Sbjct: 120  ELQREMILLDRASKKEDKNLKEKLRPKWDN--KGKATQSRKETP--LPSSRVRSSARSAD 175

Query: 753  XXXXXXXXLNELRAKRLKQQDPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXXXXX 932
                    LNELRAKRLKQQDPEAH KL +A             KRKS+           
Sbjct: 176  RAAAKDDALNELRAKRLKQQDPEAHGKLRDASRGGSGSRNLLHNKRKSYTATSLSSSSQS 235

Query: 933  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSEPFF 1112
                                           E L  TF +IKE+T+RRSKLAKWL EPFF
Sbjct: 236  DSESESQSEDEGSTGDGGMIDSDDERGIPGSEGL--TFDDIKEVTVRRSKLAKWLMEPFF 293

Query: 1113 EDLIVGCFVRVGIGKSKSGPIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNENSA 1292
            E+LIVGCFVRVGIG+SKSGPIYRLC+VRNVD+S+PDRQYKL+N+ THK+LN VWGNENSA
Sbjct: 294  EELIVGCFVRVGIGRSKSGPIYRLCMVRNVDASEPDRQYKLDNKITHKYLNVVWGNENSA 353

Query: 1293 ARWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAETVKQ 1472
            ARWQMAMVSDS P EEE+ QWVREVERS G+MP+K D+  KKE+I+  NTFVYSA TVKQ
Sbjct: 354  ARWQMAMVSDSVPNEEEFKQWVREVERSGGRMPTKHDILDKKESIKKINTFVYSAATVKQ 413

Query: 1473 MLQEKKSSTSRPLNIAAEKDRLRGELMAAESVQEQ---ERIKAKLLQLEASRKTNVKDHK 1643
            MLQEKKS+++RPLNIA EKDRLR EL  A+S  ++   +RIK +L +LEASRK    D K
Sbjct: 414  MLQEKKSASARPLNIALEKDRLRRELEVAQSKNDEVEVDRIKTRLQELEASRKAKQTDAK 473

Query: 1644 ALKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKPXXXXXX 1823
            A++LAEMNRKNR ENFKNAS++KP N GLKAGEAGYDPFSRRWTRSRNYY+ KP      
Sbjct: 474  AIRLAEMNRKNRVENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVGKPGEVKED 533

Query: 1824 XXXXXXXXXXXXDM--NIDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGTEMNS 1997
                        D   N                             DT+APVD+GT  N 
Sbjct: 534  SGANAGNNGASTDAENNGRHGIVAAEAGIAATEAALEAAADAGKLVDTNAPVDQGTVSNM 593

Query: 1998 LHLFELDITLTDLHKFGGP---QAAFMARKQMIEATVGCKVPEDDGRRHALTLTVSDYKR 2168
            LH FEL I+L+ L KFGGP   QA FMARKQ IEATVGC+VPE+DGRRHALTL+V DYKR
Sbjct: 594  LHNFELPISLSVLQKFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTLSVGDYKR 653

Query: 2169 RRGLL 2183
            RRGLL
Sbjct: 654  RRGLL 658


>ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
            vesca subsp. vesca]
          Length = 657

 Score =  620 bits (1600), Expect = e-175
 Identities = 364/667 (54%), Positives = 412/667 (61%), Gaps = 10/667 (1%)
 Frame = +3

Query: 213  MADLENLLLEXXXXXXXXXXXXPSHPQSKRRREDQYXXXXXXXXXXXXXXXHGYSNRKPS 392
            MADL++LLLE             SH  SKRRR+D Y                GY++RKPS
Sbjct: 1    MADLDDLLLEAAGRTSSGRKSRHSHSSSKRRRDDSYSDGGSDSRGDDSDDGRGYASRKPS 60

Query: 393  GSQVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VGSDLYKDEDDRQQLAQL 569
            GSQVPLKKRL+P                              VGSDLYKDE+DR++LA++
Sbjct: 61   GSQVPLKKRLDPSEVGDEHDSQDEGDYNDSGSDRGGESNESDVGSDLYKDENDRRKLAEM 120

Query: 570  SELDREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXXXX 749
            SEL RE+ILSDRA KKDDK   EK R K D GK    TQSRK TPPL             
Sbjct: 121  SELQRELILSDRAQKKDDKSLKEKFRPKWDKGK---ATQSRKVTPPLPSSRVRSSARSAD 177

Query: 750  XXXXXXXXXLNELRAKRLKQQDPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXXXX 929
                     LNELRAKRLKQQDPEAHRKL +             T +KSF          
Sbjct: 178  RAAAKDDA-LNELRAKRLKQQDPEAHRKLRDVSRGSVGSKNFSHTIKKSFSAVRRSSSSQ 236

Query: 930  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSEPF 1109
                                                 TF++IKEITIRRS+LAKWL EPF
Sbjct: 237  SDSESRSHSDDDGSSADDAIDSDDERGNQGL------TFEDIKEITIRRSRLAKWLMEPF 290

Query: 1110 FEDLIVGCFVRVGIGKSKSG-PIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNEN 1286
            FE+LIVGC VRVGIGK+KSG PIYRLC V NVDSSDPDRQYKLEN+TTHK+LN VWGNEN
Sbjct: 291  FEELIVGCCVRVGIGKTKSGRPIYRLCSVCNVDSSDPDRQYKLENKTTHKYLNVVWGNEN 350

Query: 1287 SAARWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAETV 1466
            SAARWQMAMVSDS PLEEEY+QWVREVE++ G++PSK+DV  KKEAI+ TNTFVYSA+TV
Sbjct: 351  SAARWQMAMVSDSLPLEEEYDQWVREVEKNGGRLPSKEDVLEKKEAIKKTNTFVYSAKTV 410

Query: 1467 KQMLQEKKSSTSRPLNIAAEKDRLRGELMAAESVQ---EQERIKAKLLQLEASRKTNVKD 1637
            KQM+QEKKS++SRPLNIA EKDRLR EL  A+S     E ERIKA+L QLEA +++  KD
Sbjct: 411  KQMIQEKKSASSRPLNIALEKDRLRRELEIAQSKHDDAEVERIKARLEQLEARQQSQGKD 470

Query: 1638 HKALKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKPXXXX 1817
             KA++LAEMNRKNR +NFKNAS +KP   GLKAGEAGYDPFSRRWTRSRNYY+SKP    
Sbjct: 471  SKAVRLAEMNRKNRVDNFKNASGLKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPDEQK 530

Query: 1818 XXXXXXXXXXXXXXDM--NIDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGTEM 1991
                          ++  N                             DT APVD+GT  
Sbjct: 531  DDAEANAVAAESLAEVETNGTGGVVAVRAGLEATAAALEAAAGAGKLIDTMAPVDQGTSS 590

Query: 1992 NSLHLFELDITLTDLHKFGGPQAA---FMARKQMIEATVGCKVPEDDGRRHALTLTVSDY 2162
            N LH FEL I+L  L KFGGPQ A   FMARKQ IEATVG +VPEDDGRRHALTL+VSDY
Sbjct: 591  NPLHNFELPISLATLQKFGGPQGAQEGFMARKQRIEATVGVRVPEDDGRRHALTLSVSDY 650

Query: 2163 KRRRGLL 2183
            KRRRGLL
Sbjct: 651  KRRRGLL 657


>ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|550327599|gb|EEE97240.2| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 664

 Score =  619 bits (1597), Expect = e-174
 Identities = 349/669 (52%), Positives = 418/669 (62%), Gaps = 12/669 (1%)
 Frame = +3

Query: 213  MADLENLLLEXXXXXXXXXXXXPSHPQSKRRRED-QYXXXXXXXXXXXXXXXHGYSNRKP 389
            MADLENLLLE             S P S+RR+++  Y                GY++RKP
Sbjct: 1    MADLENLLLEAAGRTGKSGRNRNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRKP 60

Query: 390  SGSQVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VGSDLYKDEDDRQQLA 563
            SGSQVPLKKRLE                                +G DLYKDEDDRQ+LA
Sbjct: 61   SGSQVPLKKRLETNERDDEGGSQEEGDYDDGGSDREGESSDGSDIGDDLYKDEDDRQKLA 120

Query: 564  QLSELDREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXX 743
            Q+SELDRE+IL+DRA KK DKH  EK+R KRD+ K    T+SRK+TPPL           
Sbjct: 121  QMSELDRELILADRADKKGDKHLTEKIRSKRDNDKP---TRSRKETPPLPSSRGVRSSAR 177

Query: 744  XXXXXXXXXXXLNELRAKRLKQQDPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXX 923
                       LNELRAKRLKQQDPEAHRKL +A             K+ +F        
Sbjct: 178  SADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSAGSRGFAQVKKNNFTSARLSSS 237

Query: 924  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSE 1103
                                             P S  PT+++IKEITIRR+KLAKW  E
Sbjct: 238  SSESESGSRSHSEDEGSTGDGGMADSDEDGD--PGSRGPTYEDIKEITIRRTKLAKWFME 295

Query: 1104 PFFEDLIVGCFVRVGIGKSKSGPIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNE 1283
            P+FE+LI+GCFVRVGIG+SK+GP+YRLC+VRNVD+++PD+ YKLEN++T+K+LN  WG +
Sbjct: 296  PWFEELIIGCFVRVGIGRSKTGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGAD 355

Query: 1284 NSAARWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAET 1463
            +SAARWQMAMVSDSAP EEEY QWVRE ER  G++PSKQD+  KKEAI+ +NTFVYSA T
Sbjct: 356  SSAARWQMAMVSDSAPTEEEYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYSAAT 415

Query: 1464 VKQMLQEKKSSTSRPLNIAAEKDRLRGELMAAESVQEQ---ERIKAKLLQLEASRKTNVK 1634
            VKQMLQEKKS++SRPLN+AAEKDRLR EL  A+S  ++   ERI+A++L+LEASR+  VK
Sbjct: 416  VKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSRHDEAEVERIEARILELEASRQAKVK 475

Query: 1635 DHKALKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKP--- 1805
            D KAL+LAEMNRKNR ENF+NAS++KP N GLKAGEAGYDPFSRRWTRSRNYY+S P   
Sbjct: 476  DAKALRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPAGG 535

Query: 1806 XXXXXXXXXXXXXXXXXXDMNIDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGT 1985
                              D +  +                          DTSAPVD+GT
Sbjct: 536  DDAVAASNSEANDTAAVADSDHVVAGAMSESGVAATAAALDAAADAGKLVDTSAPVDQGT 595

Query: 1986 EMNSLHLFELDITLTDLHKFGGPQ---AAFMARKQMIEATVGCKVPEDDGRRHALTLTVS 2156
            E N++H FEL+I+L  L KF GPQ   A FMARKQ IEA VGC+V E+DGRRHALTLTV 
Sbjct: 596  ESNTMHNFELEISLIALQKFRGPQGAHAGFMARKQRIEANVGCQVRENDGRRHALTLTVG 655

Query: 2157 DYKRRRGLL 2183
            DYKRRRGLL
Sbjct: 656  DYKRRRGLL 664


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Glycine max] gi|571466984|ref|XP_006583809.1| PREDICTED:
            RNA polymerase-associated protein RTF1 homolog isoform X2
            [Glycine max]
          Length = 656

 Score =  617 bits (1590), Expect = e-174
 Identities = 356/664 (53%), Positives = 411/664 (61%), Gaps = 7/664 (1%)
 Frame = +3

Query: 213  MADLENLLLEXXXXXXXXXXXXPSHPQSKRRREDQYXXXXXXXXXXXXXXXHGYSNRKPS 392
            MADLENLLLE             S P S+RR +  Y                 Y++RKPS
Sbjct: 1    MADLENLLLEAAGRTGTAGRNRHSLPSSRRRHDGAYSDGGSDSRDEDSDDELNYASRKPS 60

Query: 393  GSQVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VGSDLYKDEDDRQQLAQL 569
            GSQVPLKKRL+P                              +G DLYKDEDDR++L+++
Sbjct: 61   GSQVPLKKRLDPTERDDDLGSQEEADDDGRSDCDGDSSDESNIGDDLYKDEDDRRKLSEM 120

Query: 570  SELDREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXXXX 749
            +EL REMILSDRA+KKDDK+   K+  KR+ GK       RKQ+PP++            
Sbjct: 121  TELQREMILSDRATKKDDKNLLGKIASKREKGK---VAVPRKQSPPMSSSRMRASARSAD 177

Query: 750  XXXXXXXXXLNELRAKRLKQQDPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXXXX 929
                     LNELRAKRLKQQDPEAHR+L  A           P KRK F          
Sbjct: 178  RSAKNDA--LNELRAKRLKQQDPEAHRRLREASRNAGSRHFSPP-KRKPFTSTSLSSSSH 234

Query: 930  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSEPF 1109
                                            E   P+FQ++KEITIRRSKLAKW  EPF
Sbjct: 235  SESESRSHSDDEGSTGDGGIVDSDDDRALAGSEG--PSFQDVKEITIRRSKLAKWFMEPF 292

Query: 1110 FEDLIVGCFVRVGIGKSKSGPIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNENS 1289
            FE+LIVGCFVRVGIG+SK+GPIYRLC+V+NVD+S+PDRQYKLEN+TT+K+LN VWGNE+S
Sbjct: 293  FEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESS 352

Query: 1290 AARWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAETVK 1469
            AARWQMAMVSDSAPLEEE+ QWV+EV+RS G+MPSKQDV  KK+AIQ   TFVYSA TVK
Sbjct: 353  AARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATVK 412

Query: 1470 QMLQEKKSSTSRPLNIAAEKDRLRGELMAAESVQEQ---ERIKAKLLQLEASRKTNVKDH 1640
            QMLQEKKS+++RPLN+AAEKDRLR EL  A+S  ++   ERIK +LL+LEASR+   KD 
Sbjct: 413  QMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKYDEAEVERIKTRLLELEASRQAKQKDA 472

Query: 1641 KALKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKPXXXXX 1820
            KALKLAEMNRKNR ENFKNAS+MKP N GLKAGEAGYDPFSRRWTRSRNYY +KP     
Sbjct: 473  KALKLAEMNRKNRFENFKNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAA 532

Query: 1821 XXXXXXXXXXXXXDMNIDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGTEMNSL 2000
                           N                             DTSAPVD+GTE N L
Sbjct: 533  AGNNSVNGNVAGAGSNGTGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTESNML 592

Query: 2001 HLFELDITLTDLHKFG---GPQAAFMARKQMIEATVGCKVPEDDGRRHALTLTVSDYKRR 2171
            H FEL I+L  L KFG   G QA FMARKQ IEATVG +V E+DGRRHALTLTVSDYKRR
Sbjct: 593  HNFELPISLALLQKFGGAQGAQAGFMARKQKIEATVGFRVSENDGRRHALTLTVSDYKRR 652

Query: 2172 RGLL 2183
            RGLL
Sbjct: 653  RGLL 656


>ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Cicer arietinum] gi|502142571|ref|XP_004505023.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Cicer arietinum]
          Length = 658

 Score =  616 bits (1588), Expect = e-173
 Identities = 359/666 (53%), Positives = 410/666 (61%), Gaps = 9/666 (1%)
 Frame = +3

Query: 213  MADLENLLLEXXXXXXXXXXXXP-SHPQSKRRREDQYXXXXXXXXXXXXXXXHGYSNRKP 389
            MADLENLLLE              S P S+RRR+  Y                 Y +RKP
Sbjct: 1    MADLENLLLEAAGRTGGAAGRNRHSIPPSRRRRDGSYSDGGSDSRDDDSDDELNYPSRKP 60

Query: 390  SGSQVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VGSDLYKDEDDRQQLA 563
            SGSQVPLKKRL+P                               +G DLYKDEDDR++L+
Sbjct: 61   SGSQVPLKKRLDPTERDDDLGSQEEADDDDGRSDREGDSSDESNIGDDLYKDEDDRRKLS 120

Query: 564  QLSELDREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXX 743
            ++SEL REMILSDRASKKDDK    K+  KR+ GK   T    KQ+PPL+          
Sbjct: 121  EMSELQREMILSDRASKKDDKSLLGKIASKREKGKAIMTG---KQSPPLSSSRMRASARS 177

Query: 744  XXXXXXXXXXXLNELRAKRLKQQDPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXX 923
                       LNELRAKRLKQQDPEA R+L  A           P KRKSF        
Sbjct: 178  ADRSAKNVA--LNELRAKRLKQQDPEARRRLREASRNSGPRRFSPP-KRKSFTSANLSSS 234

Query: 924  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSE 1103
                                              E   P+FQ+IKEITIRRSKLAKW  E
Sbjct: 235  SHSDSDSRSHSDDEGSTGDGGIADSDDDRALSGSEG--PSFQDIKEITIRRSKLAKWFME 292

Query: 1104 PFFEDLIVGCFVRVGIGKSKSGPIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNE 1283
            PFFE+LIVGCFVRVGIG+SK+GPIYRLC+V+NVDSSDPDRQYKLENRTTHK+LN VWGNE
Sbjct: 293  PFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDSSDPDRQYKLENRTTHKYLNVVWGNE 352

Query: 1284 NSAARWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAET 1463
            +SAARWQMAMVSDS PLEEE+ QWV+EVERS G+MP+KQDV  KK+AIQ   TFVYSA+T
Sbjct: 353  SSAARWQMAMVSDSFPLEEEFKQWVKEVERSGGRMPTKQDVLEKKQAIQKIITFVYSADT 412

Query: 1464 VKQMLQEKKSSTSRPLNIAAEKDRLRGELMAAESVQEQ---ERIKAKLLQLEASRKTNVK 1634
            VKQMLQEKKSS+SRPLN+AAEKDRLR E+  A+S  ++   ERIK ++ +LEASR   VK
Sbjct: 413  VKQMLQEKKSSSSRPLNVAAEKDRLRREMEIAQSKNDEAEVERIKTRVQELEASRHAKVK 472

Query: 1635 DHKALKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKPXXX 1814
            D KALKLAEMNRKNR ENFKNAS+++P N GLKAGEAGYDPFSRRWTRSRNYY++KP   
Sbjct: 473  DAKALKLAEMNRKNRFENFKNASELRPVNIGLKAGEAGYDPFSRRWTRSRNYYVAKPGEK 532

Query: 1815 XXXXXXXXXXXXXXXDMNIDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGTEMN 1994
                             NI                            DTSAPVD+GTE N
Sbjct: 533  AAARKNTTNVLVADAGSNITGVPVTAESGVVATAAALEAAADAGKLVDTSAPVDQGTESN 592

Query: 1995 SLHLFELDITLTDLHKFG---GPQAAFMARKQMIEATVGCKVPEDDGRRHALTLTVSDYK 2165
             LH FEL I+L  LHK+G   G QA FMARKQ +EATVG +V E+DGRRH LTL+V DYK
Sbjct: 593  FLHNFELPISLALLHKYGGAQGAQAGFMARKQRMEATVGFRVSENDGRRHVLTLSVGDYK 652

Query: 2166 RRRGLL 2183
            RRRGLL
Sbjct: 653  RRRGLL 658


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  610 bits (1574), Expect = e-172
 Identities = 351/664 (52%), Positives = 410/664 (61%), Gaps = 7/664 (1%)
 Frame = +3

Query: 213  MADLENLLLEXXXXXXXXXXXXPSHPQSKRRREDQYXXXXXXXXXXXXXXXHGYSNRKPS 392
            MADLENLLLE             S P S+RR +  Y                 Y++RKPS
Sbjct: 1    MADLENLLLEAAGRTGTAGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKPS 60

Query: 393  GSQVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VGSDLYKDEDDRQQLAQL 569
            GSQVPLKKRL+P                              +G DLYKDEDDR++L+++
Sbjct: 61   GSQVPLKKRLDPTERDDDLGSQEEADDDGRSDHDGDSSDESNIGDDLYKDEDDRRKLSEM 120

Query: 570  SELDREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXXXX 749
            +EL REMILSDRA+KKDDK+   K+  KR+ GK       RKQ+PP++            
Sbjct: 121  TELQREMILSDRATKKDDKNLLGKIASKREKGK---AAAPRKQSPPMSSSRMRASARSAD 177

Query: 750  XXXXXXXXXLNELRAKRLKQQDPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXXXX 929
                     LNELRAKRLKQQDPEAHR+L  A           P KRK+F          
Sbjct: 178  RSAKNDA--LNELRAKRLKQQDPEAHRRLREASRNAGPRHFSPP-KRKTFTSTSLSSSSH 234

Query: 930  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSEPF 1109
                                            E   P+FQ+IKEITIRRSKLAKW  EPF
Sbjct: 235  SESESRSHSDDEGSTGDGGIADSDDDRALAGSEG--PSFQDIKEITIRRSKLAKWFMEPF 292

Query: 1110 FEDLIVGCFVRVGIGKSKSGPIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNENS 1289
            FE+LIVGCFVRVGIG+SK+GPIYRLC+V+NVD+S+PDRQYKLEN+TT+K+LN VWGNE+S
Sbjct: 293  FEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESS 352

Query: 1290 AARWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAETVK 1469
            AARWQMAMVSDSAP+EEE+ QWV+EV+ S G+MPSKQDV  KK+AIQ   TFVYSA TVK
Sbjct: 353  AARWQMAMVSDSAPMEEEFKQWVKEVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATVK 412

Query: 1470 QMLQEKKSSTSRPLNIAAEKDRLRGELMAAESVQEQ---ERIKAKLLQLEASRKTNVKDH 1640
            QMLQEKKS+++RPLN+AAEKDRLR EL  A+S  ++   ERIK +L +LEASR+   KD 
Sbjct: 413  QMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVERIKTRLQELEASRQAKQKDA 472

Query: 1641 KALKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKPXXXXX 1820
            KALKLAEMNRKNR ENFKNAS++KP N GLKAGEAGYDPFSRRWTRSRNYY +KP     
Sbjct: 473  KALKLAEMNRKNRFENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAA 532

Query: 1821 XXXXXXXXXXXXXDMNIDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGTEMNSL 2000
                           N                             DTSAPVD+GTE N L
Sbjct: 533  AGNNIVNGNVAGAGSNATGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTESNML 592

Query: 2001 HLFELDITLTDLHKFG---GPQAAFMARKQMIEATVGCKVPEDDGRRHALTLTVSDYKRR 2171
            H FEL I+L  L K+G   G QA FMARKQ IE+TVG +V E+DGRRHALTLTVSDYKRR
Sbjct: 593  HNFELPISLALLQKYGGAPGAQAGFMARKQRIESTVGFRVSENDGRRHALTLTVSDYKRR 652

Query: 2172 RGLL 2183
            RGLL
Sbjct: 653  RGLL 656


>ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
            gi|561032714|gb|ESW31293.1| hypothetical protein
            PHAVU_002G226300g [Phaseolus vulgaris]
          Length = 654

 Score =  599 bits (1545), Expect = e-168
 Identities = 348/665 (52%), Positives = 409/665 (61%), Gaps = 8/665 (1%)
 Frame = +3

Query: 213  MADLENLLLEXXXXXXXXXXXXPSHPQSKRRREDQYXXXXXXXXXXXXXXXHGYSNRKPS 392
            MADLENLLLE             S P S+RR +  Y                 Y++RKPS
Sbjct: 1    MADLENLLLEAAGRTGTSGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKPS 60

Query: 393  GSQVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VGSDLYKDEDDRQQLAQ 566
            GSQVPLKKRL+P                               +G DLYKDEDDR++L++
Sbjct: 61   GSQVPLKKRLDPSERDDDLGSQEEADDDDGHSDHDGDSSDESNIGDDLYKDEDDRRKLSE 120

Query: 567  LSELDREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXXX 746
            ++EL REMILSDRA+KKDDK+   K+  KR+ GK    +  RKQ+PP++           
Sbjct: 121  MTELQREMILSDRATKKDDKNLLGKIASKREKGK---VSVPRKQSPPMSSSRMRASARSA 177

Query: 747  XXXXXXXXXXLNELRAKRLKQQDPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXXX 926
                      LNELRAKRLKQQDPEAHRKL  A           P KRK F         
Sbjct: 178  DRSAKNDA--LNELRAKRLKQQDPEAHRKLREASRNAGPRHFSPP-KRKPFTSTSLSSSS 234

Query: 927  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSEP 1106
                                             E   P+FQ+IKEITIRRSKLAKW  EP
Sbjct: 235  HSESESRSHSDDEGSTGDGGIGDSDDDRALTGSEG--PSFQDIKEITIRRSKLAKWFMEP 292

Query: 1107 FFEDLIVGCFVRVGIGKSKSGPIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNEN 1286
            FFE+LIVGCFVRVGIG+SK+GPIYRLC+V+NVD+S+PDRQYKLEN+TT+K+LN VWGNE+
Sbjct: 293  FFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNES 352

Query: 1287 SAARWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAETV 1466
            SAARWQMAMVSDSAPLEEE+ QWV+EV+RS G+MP+KQDV  KK+AIQ   TFVYSA TV
Sbjct: 353  SAARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPTKQDVLEKKQAIQKAITFVYSAATV 412

Query: 1467 KQMLQEKKSSTSRPLNIAAEKDRLRGELMAAESVQEQ---ERIKAKLLQLEASRKTNVKD 1637
            KQMLQEKKS+++RPLN+AAEKDRLR EL  A+S  ++   +RIKA+L +LEASR    KD
Sbjct: 413  KQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVDRIKARLQELEASRHAKQKD 472

Query: 1638 HKALKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKPXXXX 1817
             KALKLAEMNRKNR ENFKNAS++KP N GLKAGEAGYDPFSRRWTRSRNYY  +     
Sbjct: 473  AKALKLAEMNRKNRFENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYTGEKAAAG 532

Query: 1818 XXXXXXXXXXXXXXDMNIDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGTEMNS 1997
                               +                          DTSAPVD+GTE N 
Sbjct: 533  NNSVNGIVAGPGTNSTGAPV---TAEAGLVATAAALEAAADAGKLVDTSAPVDQGTESNM 589

Query: 1998 LHLFELDITLTDLHKFG---GPQAAFMARKQMIEATVGCKVPEDDGRRHALTLTVSDYKR 2168
            LH FEL I+L  L K+G   G QA FMARKQ IE+TVG +V E+DGRRH+LTL+VSDYKR
Sbjct: 590  LHNFELPISLALLQKYGGAQGAQAGFMARKQRIESTVGFRVLENDGRRHSLTLSVSDYKR 649

Query: 2169 RRGLL 2183
            RRGLL
Sbjct: 650  RRGLL 654


>gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana]
          Length = 643

 Score =  597 bits (1540), Expect = e-168
 Identities = 342/663 (51%), Positives = 401/663 (60%), Gaps = 6/663 (0%)
 Frame = +3

Query: 213  MADLENLLLEXXXXXXXXXXXXPSHPQSKRRREDQYXXXXXXXXXXXXXXXHGYSNRKPS 392
            M DLENLLLE             SHP S RRRE  Y                GY++RKPS
Sbjct: 1    MGDLENLLLEAAGRTNSAGRS--SHPPSSRRREGSYSDGSSDSRDDSDED-RGYASRKPS 57

Query: 393  GSQVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSDLYKDEDDRQQLAQLS 572
            GSQVPLKKRLE                               G DLYK+E+DRQ+LA ++
Sbjct: 58   GSQVPLKKRLEAEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMT 117

Query: 573  ELDREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXXXXX 752
            E  REMILS+RA KK DK+F EKLR KR+S K P    S+K+T PL              
Sbjct: 118  EFQREMILSERADKKGDKNFTEKLRSKRESEKTPV---SKKETQPLPASRGVRSSARSAD 174

Query: 753  XXXXXXXXLNELRAKRLKQQDPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXXXXX 932
                    LNELRAKR+KQQDP A RKL +A            TKRK             
Sbjct: 175  RAAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQS 234

Query: 933  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSEPFF 1112
                                            S +PTF+++KE+TIRRSKLAKWL EPFF
Sbjct: 235  DSDSRSQSDDEGSNGGMLDSDDD--------RSDVPTFEDVKEVTIRRSKLAKWLMEPFF 286

Query: 1113 EDLIVGCFVRVGIGKSKSGPIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNENSA 1292
            E+LIVGCFVRVGIG+SKSGPIYRLC V+NVD++DPD+ YKLEN+TTHK+LN VWGNE SA
Sbjct: 287  EELIVGCFVRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSA 346

Query: 1293 ARWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAETVKQ 1472
            ARWQMAM+SD  PLEEEY QW+REVER++G+MP+KQD+S KKEAIQ TN+FVYSAETVKQ
Sbjct: 347  ARWQMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQ 406

Query: 1473 MLQEKKSSTSRPLNIAAEKDRLRGELMAAESVQEQ---ERIKAKLLQLEASRKTNVKDHK 1643
            MLQEKKS++ RP+N+AAEKDRLR EL  A+S  ++   ERIK+K+ QL+ASR     D K
Sbjct: 407  MLQEKKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDASRNKKGVDKK 466

Query: 1644 ALKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKPXXXXXX 1823
            ALKLAEMN+KNRAENFKNAS++K     LKAGEAGYDPFSRRWTRS NYY  K       
Sbjct: 467  ALKLAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGE 526

Query: 1824 XXXXXXXXXXXXDMNIDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGTEMNSLH 2003
                           ++                           DT AP+ +G E N LH
Sbjct: 527  ENEAAVAAA------VETNGADAGAGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLH 580

Query: 2004 LFELDITLTDLHKFGGPQA---AFMARKQMIEATVGCKVPEDDGRRHALTLTVSDYKRRR 2174
             FEL ++LT L K+GGPQ    AFMARKQ+ EATVGC+V E+DG+RH LTLTVSDYKRRR
Sbjct: 581  NFELSLSLTALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLTLTVSDYKRRR 640

Query: 2175 GLL 2183
            GLL
Sbjct: 641  GLL 643


>ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis thaliana]
            gi|12323334|gb|AAG51642.1|AC018908_8 unknown protein;
            78902-80833 [Arabidopsis thaliana]
            gi|332195649|gb|AEE33770.1| Paf1C-like transcription
            factor [Arabidopsis thaliana]
          Length = 643

 Score =  595 bits (1535), Expect = e-167
 Identities = 341/663 (51%), Positives = 400/663 (60%), Gaps = 6/663 (0%)
 Frame = +3

Query: 213  MADLENLLLEXXXXXXXXXXXXPSHPQSKRRREDQYXXXXXXXXXXXXXXXHGYSNRKPS 392
            M DLENLLLE              HP S RRRE  Y                GY++RKPS
Sbjct: 1    MGDLENLLLEAAGRTNSAGRSR--HPPSSRRREGSYSDGSSDSRDDSDED-RGYASRKPS 57

Query: 393  GSQVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSDLYKDEDDRQQLAQLS 572
            GSQVPLKKRLE                               G DLYK+E+DRQ+LA ++
Sbjct: 58   GSQVPLKKRLEAEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMT 117

Query: 573  ELDREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXXXXX 752
            E  REMILS+RA KK DK+F EKLR KR+S K P    S+K+T PL              
Sbjct: 118  EFQREMILSERADKKGDKNFTEKLRSKRESEKTPV---SKKETQPLPASRGVRSSARSAD 174

Query: 753  XXXXXXXXLNELRAKRLKQQDPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXXXXX 932
                    LNELRAKR+KQQDP A RKL +A            TKRK             
Sbjct: 175  RAAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQS 234

Query: 933  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSEPFF 1112
                                            S +PTF+++KE+TIRRSKLAKWL EPFF
Sbjct: 235  DSDSRSQSDDEGSNGGMLDSDDD--------RSDVPTFEDVKEVTIRRSKLAKWLMEPFF 286

Query: 1113 EDLIVGCFVRVGIGKSKSGPIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNENSA 1292
            E+LIVGCFVRVGIG+SKSGPIYRLC V+NVD++DPD+ YKLEN+TTHK+LN VWGNE SA
Sbjct: 287  EELIVGCFVRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSA 346

Query: 1293 ARWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAETVKQ 1472
            ARWQMAM+SD  PLEEEY QW+REVER++G+MP+KQD+S KKEAIQ TN+FVYSAETVKQ
Sbjct: 347  ARWQMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQ 406

Query: 1473 MLQEKKSSTSRPLNIAAEKDRLRGELMAAESVQEQ---ERIKAKLLQLEASRKTNVKDHK 1643
            MLQEKKS++ RP+N+AAEKDRLR EL  A+S  ++   ERIK+K+ QL+ASR     D K
Sbjct: 407  MLQEKKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDASRNKKGVDKK 466

Query: 1644 ALKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKPXXXXXX 1823
            ALKLAEMN+KNRAENFKNAS++K     LKAGEAGYDPFSRRWTRS NYY  K       
Sbjct: 467  ALKLAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGE 526

Query: 1824 XXXXXXXXXXXXDMNIDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGTEMNSLH 2003
                           ++                           DT AP+ +G E N LH
Sbjct: 527  ENEAAVAAA------VETNGADAGAGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLH 580

Query: 2004 LFELDITLTDLHKFGGPQA---AFMARKQMIEATVGCKVPEDDGRRHALTLTVSDYKRRR 2174
             FEL ++LT L K+GGPQ    AFMARKQ+ EATVGC+V E+DG+RH LTLTVSDYKRRR
Sbjct: 581  NFELSLSLTALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLTLTVSDYKRRR 640

Query: 2175 GLL 2183
            GLL
Sbjct: 641  GLL 643


>ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Citrus sinensis] gi|568867309|ref|XP_006486981.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Citrus sinensis]
          Length = 643

 Score =  590 bits (1522), Expect = e-166
 Identities = 344/663 (51%), Positives = 400/663 (60%), Gaps = 6/663 (0%)
 Frame = +3

Query: 213  MADLENLLLEXXXXXXXXXXXXPSHPQSKRRREDQYXXXXXXXXXXXXXXXHGYSNRKPS 392
            MADLENLLLE             S   SKRRRE  Y                GY +RKPS
Sbjct: 1    MADLENLLLEAAGRTNSAGRNRHSASSSKRRREGSYSGSDSRDDDSDDN--RGYGSRKPS 58

Query: 393  GSQVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSDLYKDEDDRQQLAQLS 572
            GSQVPLKKRL+P                              G    + +DD     Q++
Sbjct: 59   GSQVPLKKRLDPTERDDDQGSQEEGDYDGGASEHE-------GDSSNESDDDNH--GQMT 109

Query: 573  ELDREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXXXXX 752
            EL+REM++ +R  KK DK+  +K R +R+      +T+S K+TPPL              
Sbjct: 110  ELEREMMIFERDDKKVDKNLRDKFRSRREE----RSTRSTKETPPLPSSRSARLAARSAD 165

Query: 753  XXXXXXXXLNELRAKRLKQQDPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXXXXX 932
                    LNELRAKRLKQQDPEAHR+L +A           P KRK+F           
Sbjct: 166  RAAAKDDALNELRAKRLKQQDPEAHRRLRDASRGGSGSRVLSPVKRKAFTPAGLSSSSQS 225

Query: 933  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSEPFF 1112
                                          P S  PT+ +IKEITIRRSKLAKW  EPFF
Sbjct: 226  ESESRSHSDDEGSTGDGGMADSDDDGA---PGSGRPTYDDIKEITIRRSKLAKWFMEPFF 282

Query: 1113 EDLIVGCFVRVGIGKSKSGPIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNENSA 1292
            E+LIVGCFVRVGIG+SK+GPIYRLC+VRNVD+++PDR YKLENRTT K+LN  WGNE+SA
Sbjct: 283  EELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRSYKLENRTTCKYLNVTWGNESSA 342

Query: 1293 ARWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAETVKQ 1472
            ARWQMAMVSDS PLEEE+ QW+REVER+SG+MPSKQDV  KK++IQ  NTFVYSA TVKQ
Sbjct: 343  ARWQMAMVSDSPPLEEEFKQWLREVERNSGRMPSKQDVLEKKDSIQKINTFVYSAATVKQ 402

Query: 1473 MLQEKKSSTSRPLNIAAEKDRLRGELMAAESVQEQ---ERIKAKLLQLEASRKTNVKDHK 1643
            MLQEKKS++SRPLN+AAEKDRLR EL  A+S  ++   ERIK +L +LEASR + VKD K
Sbjct: 403  MLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVDMERIKKRLQELEASRDSKVKDAK 462

Query: 1644 ALKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKPXXXXXX 1823
            A++LAEMNRKNR ENFKNAS++K  N  LKAGEAGYDPFSRRWTRSRNYYISKP      
Sbjct: 463  AIRLAEMNRKNRVENFKNASELKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGEEVTA 522

Query: 1824 XXXXXXXXXXXXDMNIDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGTEMNSLH 2003
                            +                           DT+AP+D GTE N LH
Sbjct: 523  EANGDKNGVPGGANGEE--GATGEVGMAATEAALEAAAGAGKLVDTNAPLDLGTESNMLH 580

Query: 2004 LFELDITLTDLHKFGGPQ---AAFMARKQMIEATVGCKVPEDDGRRHALTLTVSDYKRRR 2174
             FELDI+L  L KFGGPQ   A FMARKQ IEATVGC+VPE+DGRRHALTLTV DYKRRR
Sbjct: 581  DFELDISLNALKKFGGPQGVLAGFMARKQRIEATVGCQVPENDGRRHALTLTVGDYKRRR 640

Query: 2175 GLL 2183
            GLL
Sbjct: 641  GLL 643


>ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citrus clementina]
            gi|557524836|gb|ESR36142.1| hypothetical protein
            CICLE_v10028000mg [Citrus clementina]
          Length = 643

 Score =  589 bits (1519), Expect = e-165
 Identities = 344/663 (51%), Positives = 398/663 (60%), Gaps = 6/663 (0%)
 Frame = +3

Query: 213  MADLENLLLEXXXXXXXXXXXXPSHPQSKRRREDQYXXXXXXXXXXXXXXXHGYSNRKPS 392
            MADLENLLLE             S   SKRRRE  Y                GY +RKPS
Sbjct: 1    MADLENLLLEAAGRTNSAGRNRHSASSSKRRREGSYSGSDSRDDDSDDN--RGYGSRKPS 58

Query: 393  GSQVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSDLYKDEDDRQQLAQLS 572
            GSQVPLKKRL+P                              G    + +DD     Q++
Sbjct: 59   GSQVPLKKRLDPAERDDDQGSQEEGDYDGGASEHE-------GDSSNESDDDNH--GQMT 109

Query: 573  ELDREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXXXXX 752
            EL+REM++ +R  KK DK+  +K R +R+      +T+S K+TPPL              
Sbjct: 110  ELEREMMIFERDDKKVDKNLRDKFRSRREE----RSTRSTKETPPLPSSRSARLAARSAD 165

Query: 753  XXXXXXXXLNELRAKRLKQQDPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXXXXX 932
                    LNELRAKRLKQQDPEAHR+L +A           P KRK+F           
Sbjct: 166  RAAAKDDALNELRAKRLKQQDPEAHRRLRDASRGGSGSRVLSPVKRKAFTPAGLSSSSQS 225

Query: 933  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSEPFF 1112
                                          P S  PT+ +IKEITIRRSKLAKW  EPFF
Sbjct: 226  ESESRSHSDDEGSTGDGGMADSDDDGA---PGSGRPTYDDIKEITIRRSKLAKWFMEPFF 282

Query: 1113 EDLIVGCFVRVGIGKSKSGPIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNENSA 1292
            E+LIVGCFVRVGIG+SK+GPIYRLC+VRNVD+++PDR YKLENRTT K+LN  WGNE+SA
Sbjct: 283  EELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRSYKLENRTTCKYLNVTWGNESSA 342

Query: 1293 ARWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAETVKQ 1472
            ARWQMAMVSDS PLEEE+ QW+REVER+ G+MPSKQDV  KKE+IQ  NTFVYSA TVKQ
Sbjct: 343  ARWQMAMVSDSPPLEEEFKQWLREVERNGGRMPSKQDVLEKKESIQKINTFVYSAATVKQ 402

Query: 1473 MLQEKKSSTSRPLNIAAEKDRLRGELMAAESVQ---EQERIKAKLLQLEASRKTNVKDHK 1643
            MLQEKKS++SRPLN+AAEKDRLR EL  A+S     + ERIK +L +LEASR + VKD K
Sbjct: 403  MLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDDVDMERIKKRLQELEASRDSKVKDAK 462

Query: 1644 ALKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKPXXXXXX 1823
            A++LAEMNRKNR ENFKNAS++K  N  LKAGEAGYDPFSRRWTRSRNYYISKP      
Sbjct: 463  AIRLAEMNRKNRVENFKNASELKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGEEVTA 522

Query: 1824 XXXXXXXXXXXXDMNIDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGTEMNSLH 2003
                            +                           DT+AP+D GTE N LH
Sbjct: 523  EANGDKNGVPGGANGEE--GATGEVGMAATEAALEAAAGAGKLVDTNAPLDLGTESNMLH 580

Query: 2004 LFELDITLTDLHKFGGPQ---AAFMARKQMIEATVGCKVPEDDGRRHALTLTVSDYKRRR 2174
             FELDI+L  L KFGGPQ   A FMARKQ IEATVGC+VPE+DGRRHALTLTV DYKRRR
Sbjct: 581  DFELDISLNALKKFGGPQGVLAGFMARKQRIEATVGCQVPENDGRRHALTLTVGDYKRRR 640

Query: 2175 GLL 2183
            GLL
Sbjct: 641  GLL 643


>ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Capsella rubella]
            gi|482569554|gb|EOA33742.1| hypothetical protein
            CARUB_v10019938mg [Capsella rubella]
          Length = 644

 Score =  589 bits (1519), Expect = e-165
 Identities = 335/663 (50%), Positives = 397/663 (59%), Gaps = 6/663 (0%)
 Frame = +3

Query: 213  MADLENLLLEXXXXXXXXXXXXPSHPQSKRRREDQYXXXXXXXXXXXXXXXHGYSNRKPS 392
            M DLENLLLE             SHP S RRRE  Y                G+++RKPS
Sbjct: 1    MGDLENLLLEAAGRTNPAGKSRHSHPPSSRRREGSYSDGSSDSRDDSDDD-RGFASRKPS 59

Query: 393  GSQVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSDLYKDEDDRQQLAQLS 572
            GSQVPLKKRLE                               G DLYK+E+DRQ+LA ++
Sbjct: 60   GSQVPLKKRLEAEREDRAARNESGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMT 119

Query: 573  ELDREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXXXXX 752
            E  REMIL++RA KK DK+F EKLR KR++ K P    S+K+T PL              
Sbjct: 120  EFQREMILAERADKKGDKNFTEKLRSKRENEKTPV---SKKETQPLPASRGVRSSARSAD 176

Query: 753  XXXXXXXXLNELRAKRLKQQDPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXXXXX 932
                    LNELRAKR+KQQDP A RKL +A             KRK             
Sbjct: 177  RAAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSLKRKPLASSNLSNSSQS 236

Query: 933  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSEPFF 1112
                                            S +PTF++IKEITIRRSKLAKWL EPFF
Sbjct: 237  DSDSRSQSDDEGSNAGLDSDDD---------RSDMPTFEDIKEITIRRSKLAKWLMEPFF 287

Query: 1113 EDLIVGCFVRVGIGKSKSGPIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNENSA 1292
            E+LIVGCFVRVGIG+SKSGPIYRLC+VRNVD++DPD+ YKLEN+TTHK+LN +WGNE SA
Sbjct: 288  EELIVGCFVRVGIGRSKSGPIYRLCMVRNVDATDPDKTYKLENKTTHKYLNVIWGNETSA 347

Query: 1293 ARWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAETVKQ 1472
            ARWQMAM+SD  PLEEEY QW+REVER++G+MP+KQD+S KKEAI+  N+F+YSAETVKQ
Sbjct: 348  ARWQMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIKRINSFIYSAETVKQ 407

Query: 1473 MLQEKKSSTSRPLNIAAEKDRLRGELMAAESVQEQ---ERIKAKLLQLEASRKTNVKDHK 1643
            MLQEKKS++ RP+N+AAEKDRLR EL  A+S  ++   ERIK K+ QL+ASR     D K
Sbjct: 408  MLQEKKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKTKIKQLDASRNKKGVDKK 467

Query: 1644 ALKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKPXXXXXX 1823
            ALKLAEMN+KNRAENFKNAS++K     LK GEAGYDPFSRRWTRS NYY  K       
Sbjct: 468  ALKLAEMNKKNRAENFKNASEVKSITASLKVGEAGYDPFSRRWTRSSNYYNGKNKGKEGA 527

Query: 1824 XXXXXXXXXXXXDMNIDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGTEMNSLH 2003
                           ++                           DT AP+ +G E N LH
Sbjct: 528  ENEAAVAAA------VETNGVDAGAGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLH 581

Query: 2004 LFELDITLTDLHKFGGPQA---AFMARKQMIEATVGCKVPEDDGRRHALTLTVSDYKRRR 2174
             FEL ++L  L K+GGPQ    AFMARKQ+ EATVGC+V E+DG+RH LTLTVSDYKRRR
Sbjct: 582  NFELSVSLAALQKYGGPQGVQKAFMARKQVTEATVGCRVAENDGKRHGLTLTVSDYKRRR 641

Query: 2175 GLL 2183
            GLL
Sbjct: 642  GLL 644


>ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp. lyrata]
            gi|297333952|gb|EFH64370.1| At1g61040/T7P1_17
            [Arabidopsis lyrata subsp. lyrata]
          Length = 643

 Score =  588 bits (1517), Expect = e-165
 Identities = 338/663 (50%), Positives = 398/663 (60%), Gaps = 6/663 (0%)
 Frame = +3

Query: 213  MADLENLLLEXXXXXXXXXXXXPSHPQSKRRREDQYXXXXXXXXXXXXXXXHGYSNRKPS 392
            M DLENLLLE              HP S RRRE  Y                GY++RKPS
Sbjct: 1    MGDLENLLLEAAGRTNSAGRSR--HPPSSRRREGSYSDGSSDSRDDSDED-RGYASRKPS 57

Query: 393  GSQVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSDLYKDEDDRQQLAQLS 572
            GSQVPLKKRLE                               G DLYK+E+DRQ+LA ++
Sbjct: 58   GSQVPLKKRLEAEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMT 117

Query: 573  ELDREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXXXXX 752
            E  REMIL++RA KK DK+F EKLR KR++ K P    S+K+T PL              
Sbjct: 118  EFQREMILAERADKKGDKNFTEKLRSKRENEKTPV---SKKETQPLPASRGVRSSARSAD 174

Query: 753  XXXXXXXXLNELRAKRLKQQDPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXXXXX 932
                    LNELRAKR+KQQDP A RKL +A             KRK             
Sbjct: 175  RAAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSMKRKPLASSNLSSSSQS 234

Query: 933  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSEPFF 1112
                                            S +PTF+++KEITIRRSKLAKWL EPFF
Sbjct: 235  DSDSRSQSDDEGSNAGMLDSDDD--------RSDVPTFEDVKEITIRRSKLAKWLMEPFF 286

Query: 1113 EDLIVGCFVRVGIGKSKSGPIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNENSA 1292
            E+LIVGCFVRVGIG+SKSGPIYRLC V+NVD++DPD+ YKLEN+TTHK+LN VWGNE SA
Sbjct: 287  EELIVGCFVRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSA 346

Query: 1293 ARWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAETVKQ 1472
            ARWQMAM+SD  PLEEEY QW+REVER++G+MP+KQD+S KKEAIQ  N+FVYSAETVKQ
Sbjct: 347  ARWQMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRINSFVYSAETVKQ 406

Query: 1473 MLQEKKSSTSRPLNIAAEKDRLRGELMAAESVQEQ---ERIKAKLLQLEASRKTNVKDHK 1643
            MLQEKKS++ RP+N+AAEKDRLR EL  A+S  ++   ERIK K+ QL+ASR     D K
Sbjct: 407  MLQEKKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKTKIKQLDASRNKKGVDKK 466

Query: 1644 ALKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKPXXXXXX 1823
            ALKLAEMN+KNRAENFKNAS++K  +  LKAGEAGYDPFSRRWTRS NYY  K       
Sbjct: 467  ALKLAEMNKKNRAENFKNASEVKSISASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGE 526

Query: 1824 XXXXXXXXXXXXDMNIDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGTEMNSLH 2003
                           ++                           DT AP+ +G E N LH
Sbjct: 527  ENETAVAAA------VETNGADVGAGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLH 580

Query: 2004 LFELDITLTDLHKFGGPQA---AFMARKQMIEATVGCKVPEDDGRRHALTLTVSDYKRRR 2174
             FEL ++LT L K+GGPQ    AFMARKQ+ EATVGC+V E+DG+RH LTLTVSDYKRRR
Sbjct: 581  NFELSLSLTALQKYGGPQGVQKAFMARKQVTEATVGCRVAENDGKRHGLTLTVSDYKRRR 640

Query: 2175 GLL 2183
            GLL
Sbjct: 641  GLL 643


>ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutrema salsugineum]
            gi|557088572|gb|ESQ29352.1| hypothetical protein
            EUTSA_v10023338mg [Eutrema salsugineum]
          Length = 644

 Score =  586 bits (1511), Expect = e-164
 Identities = 334/663 (50%), Positives = 399/663 (60%), Gaps = 6/663 (0%)
 Frame = +3

Query: 213  MADLENLLLEXXXXXXXXXXXXPSHPQSKRRREDQYXXXXXXXXXXXXXXXHGYSNRKPS 392
            M DL++LLLE             SHP S RRRE  Y                GY++RKPS
Sbjct: 1    MVDLDDLLLEAAGRTNAPGRSRHSHPPSSRRREGSYSDGGSDSRDDSDEE-RGYASRKPS 59

Query: 393  GSQVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSDLYKDEDDRQQLAQLS 572
            GSQVPLKKRLE                               G DLYK+E+DRQ+LA ++
Sbjct: 60   GSQVPLKKRLEAEREDRAARDEAGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMT 119

Query: 573  ELDREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXXXXX 752
            E  REMIL++RA KK DK+F EKLR KR+  K P    S+K+T PL              
Sbjct: 120  EFQREMILAERADKKGDKNFTEKLRSKREKEKTPV---SKKETQPLPASRGVRSSARSAD 176

Query: 753  XXXXXXXXLNELRAKRLKQQDPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXXXXX 932
                    LNELRAKR+KQQ+P + RKL +A             KRK             
Sbjct: 177  RAAAKDDALNELRAKRMKQQEPASLRKLRDASKGGSGSRDFSSMKRKPLASSNLSNSSQS 236

Query: 933  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSEPFF 1112
                                            S +PTF++IK+ITIRRSKLAKWL EPFF
Sbjct: 237  DSDSRSQSDDEGSNGGMVDSDDD--------RSDVPTFEDIKDITIRRSKLAKWLMEPFF 288

Query: 1113 EDLIVGCFVRVGIGKSKSGPIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNENSA 1292
            E+LIVGCFVRVGIG+SK+GPIYRLC+V+NVD++DPD+ YKLEN+TTHK+LNC+WG+E+SA
Sbjct: 289  EELIVGCFVRVGIGRSKNGPIYRLCMVKNVDATDPDKTYKLENKTTHKYLNCIWGHESSA 348

Query: 1293 ARWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAETVKQ 1472
            ARWQMAM+SD  PLEEEY QW+REVER++G+MP+KQD+S KKEAI+  N+FVYSAETVKQ
Sbjct: 349  ARWQMAMISDGYPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIKRINSFVYSAETVKQ 408

Query: 1473 MLQEKKSSTSRPLNIAAEKDRLRGELMAAESVQEQ---ERIKAKLLQLEASRKTNVKDHK 1643
            MLQEKKS++ RP+NIAAEKDRLR EL  A+   ++   ERIKAK+ QLEASR+    D K
Sbjct: 409  MLQEKKSASVRPMNIAAEKDRLRKELEVAQIKNDEAGVERIKAKIKQLEASREKKEVDKK 468

Query: 1644 ALKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKPXXXXXX 1823
            ALKLAEMN+KNRAENFKNAS++K     LKAGEAGYDPFSRRWTRS NYY  K       
Sbjct: 469  ALKLAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKRKEGGDT 528

Query: 1824 XXXXXXXXXXXXDMNIDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGTEMNSLH 2003
                                                        DT AP+ +G E N LH
Sbjct: 529  EATAAAAVETNG-------AAAGENGVEATEAALEAAADAGKLIDTRAPIGQGAEHNLLH 581

Query: 2004 LFELDITLTDLHKFGGPQA---AFMARKQMIEATVGCKVPEDDGRRHALTLTVSDYKRRR 2174
             FEL ++LT L K+GGPQ    AFMARKQ+ EATVGC+V E+DG+RH LTLTVSDYKRRR
Sbjct: 582  NFELPLSLTALQKYGGPQGVQKAFMARKQVTEATVGCRVAENDGKRHGLTLTVSDYKRRR 641

Query: 2175 GLL 2183
            GLL
Sbjct: 642  GLL 644


>ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform 1
            [Solanum lycopersicum] gi|460374083|ref|XP_004232841.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform 2 [Solanum lycopersicum]
          Length = 645

 Score =  576 bits (1485), Expect = e-161
 Identities = 336/662 (50%), Positives = 398/662 (60%), Gaps = 7/662 (1%)
 Frame = +3

Query: 219  DLENLLLEXXXXXXXXXXXXPSHPQSKRRREDQYXXXXXXXXXXXXXXXHGYSNRKPSGS 398
            +L +LLLE            P H  SKR  +  Y                GYS RK SGS
Sbjct: 4    ELTDLLLEAAGRTNTGGRNRPPH-SSKRHHKSSYSDDGSDSRDDDSDDGRGYSGRKLSGS 62

Query: 399  QVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSDLYKDEDDRQQLAQLSEL 578
            QVPLKKRL+P                             +GSDLYKD+DDRQ+LAQ++EL
Sbjct: 63   QVPLKKRLDP--QERDDDHSSHGEGNDGDGYGNESDDDSIGSDLYKDDDDRQKLAQMTEL 120

Query: 579  DREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXXXXXXX 758
            +REMIL+DRA+KK D+  H+K+   R         Q RKQ+ P +               
Sbjct: 121  EREMILTDRAAKKSDRSLHDKMIKDR--------AQPRKQSSPPSHSRGMRSSTRALDRA 172

Query: 759  XXXXXXLNELRAKRLKQQ-DPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXXXXXX 935
                  LNE+RAKR +QQ DPE   KL +A           P KR+SF            
Sbjct: 173  ADRDDALNEIRAKRARQQQDPEGQFKLRDAARKGSGSRGYSPIKRRSFTAASLGSSPTRG 232

Query: 936  XXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSEPFFE 1115
                                         PES +PTF++IKEI+IRRSKLAKW  EPFF+
Sbjct: 233  ESDSHSNEGDSSADDGMDDSDDDKS---SPESQLPTFEDIKEISIRRSKLAKWFMEPFFD 289

Query: 1116 DLIVGCFVRVGIGKSKSGPIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNENSAA 1295
            +LIVGCFVRVGIG+S+SGPIYRLC+VRNVD+SDP+RQYKLEN+TT KFLN VWGNENSAA
Sbjct: 290  ELIVGCFVRVGIGRSRSGPIYRLCVVRNVDASDPNRQYKLENKTTSKFLNVVWGNENSAA 349

Query: 1296 RWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAETVKQM 1475
            RWQMAM+SDS PL +E++QWVREVERS G+MPSKQDV  KKEAIQ +NTFVYSA+TVKQM
Sbjct: 350  RWQMAMISDSPPLRDEFDQWVREVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQM 409

Query: 1476 LQEKKSSTSRPLNIAAEKDRLRGELMAAESVQEQ---ERIKAKLLQLEASRKTNVKDHKA 1646
            LQ+KKS+T RPLN+AAEKDRLR ++  A+   ++   ERIKA+L +LE SRK   KD KA
Sbjct: 410  LQQKKSATWRPLNVAAEKDRLRRDMEVAKMKNDEAEVERIKARLQELEDSRKVQEKDDKA 469

Query: 1647 LKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKPXXXXXXX 1826
             +LAEMNRKNR ENFKNAS+++P N  LKAGEAGYDPFSRRWTRS N Y +K        
Sbjct: 470  RRLAEMNRKNRVENFKNASELRPVNQLLKAGEAGYDPFSRRWTRSTN-YFAKGASNGEAA 528

Query: 1827 XXXXXXXXXXXDMNIDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGTEMNSLHL 2006
                                                       DT+APVD+GTE N+LH 
Sbjct: 529  AAAALAAEDNNGAG-----GTADGGMAATAAALQAAAGAGKLVDTNAPVDQGTESNTLHD 583

Query: 2007 FELDITLTDLHKFGGPQ---AAFMARKQMIEATVGCKVPEDDGRRHALTLTVSDYKRRRG 2177
            F+L I+L  L KFGG Q   A FMARKQ IEATVGC VPE+DGRRHALTL+VSDYKRRRG
Sbjct: 584  FDLPISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSVPENDGRRHALTLSVSDYKRRRG 643

Query: 2178 LL 2183
            LL
Sbjct: 644  LL 645


>ref|XP_004493842.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Cicer arietinum] gi|502110282|ref|XP_004493843.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Cicer arietinum]
          Length = 653

 Score =  561 bits (1446), Expect = e-157
 Identities = 333/666 (50%), Positives = 388/666 (58%), Gaps = 9/666 (1%)
 Frame = +3

Query: 213  MADLENLLLEXXXXXXXXXXXXPSHPQSKRRREDQYXXXXXXXXXXXXXXX---HGYSNR 383
            MADLE LLLE             S   S+R+R  ++                  HGY  R
Sbjct: 1    MADLEKLLLEAAGRNIH------SLTPSRRKRRGEFLDGGSDSGDDDSDDDGDDHGYRGR 54

Query: 384  KPSGSQVPLKKRLEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSDLYKDEDDRQQLA 563
            KPS +QVPLKKR E                              VG DLYKDEDDRQ+L+
Sbjct: 55   KPSATQVPLKKRFET----SGKDDDVSGDDDGSDREGDSSEDSDVGDDLYKDEDDRQKLS 110

Query: 564  QLSELDREMILSDRASKKDDKHFHEKLRLKRDSGKKPTTTQSRKQTPPLTXXXXXXXXXX 743
            +++EL REMILSDRASKKDDK F  K+  KR+ G K T ++     PPL           
Sbjct: 111  EMTELQREMILSDRASKKDDKDFLGKIASKREKGAKATLSRRESPPPPLLSSRVRASARS 170

Query: 744  XXXXXXXXXXXLNELRAKRLKQQDPEAHRKLNNAXXXXXXXXXXXPTKRKSFXXXXXXXX 923
                       LNELRAKRLKQ DPEA  KL                K K F        
Sbjct: 171  ADRSAAKDGA-LNELRAKRLKQLDPEAKLKLKEGSKSGGRGLFSL--KGKPFASTGLSSS 227

Query: 924  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESLIPTFQEIKEITIRRSKLAKWLSE 1103
                                                 +P+F++IKEITIRRSKLAKW  E
Sbjct: 228  SHSDSDSRSRSDDEGSNGDGGIIDSDDDRIMTGSGFEVPSFEDIKEITIRRSKLAKWFME 287

Query: 1104 PFFEDLIVGCFVRVGIGKSKSGPIYRLCIVRNVDSSDPDRQYKLENRTTHKFLNCVWGNE 1283
            PFFE+LIVGCFVRVGIG+SK+GPIYRLC+V+NVD+SDPDRQYKL+N+TT+K+LN VWGNE
Sbjct: 288  PFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASDPDRQYKLDNKTTYKYLNVVWGNE 347

Query: 1284 NSAARWQMAMVSDSAPLEEEYNQWVREVERSSGKMPSKQDVSTKKEAIQNTNTFVYSAET 1463
             SAARWQMAMVSDS PLEEE+ QWV+EVERS G+M  K DV  K +AIQ  N+FVYSA T
Sbjct: 348  TSAARWQMAMVSDSPPLEEEFKQWVKEVERSGGRMLMKLDVMEKNQAIQKINSFVYSAAT 407

Query: 1464 VKQMLQEKKSSTSRPLNIAAEKDRLRGELMAAES---VQEQERIKAKLLQLEASRKTNVK 1634
            VKQM++EKKS++ RPLN+AAEKDRL+ +L  AES     E E+IK +L +LEASRKT  K
Sbjct: 408  VKQMIEEKKSNSRRPLNVAAEKDRLKRQLEIAESKKDAAEVEKIKTRLQELEASRKTQAK 467

Query: 1635 DHKALKLAEMNRKNRAENFKNASQMKPANFGLKAGEAGYDPFSRRWTRSRNYYISKPXXX 1814
            D KAL+L+EMNRKNR ENFKNAS++KP N GLKAGEAGYDPFSRRWTRSRNYY +K    
Sbjct: 468  DAKALRLSEMNRKNRFENFKNASELKPVNKGLKAGEAGYDPFSRRWTRSRNYYNAKQAEE 527

Query: 1815 XXXXXXXXXXXXXXXDMNIDIPXXXXXXXXXXXXXXXXXXXXXXXXXDTSAPVDRGTEMN 1994
                             N                             DT APVD+GTE N
Sbjct: 528  AAAGNNSSGGAVGDRGSNGVGATVAGEAGVVATAEALEAAADAGKLVDTRAPVDQGTESN 587

Query: 1995 SLHLFELDITLTDLHKFGGPQ---AAFMARKQMIEATVGCKVPEDDGRRHALTLTVSDYK 2165
             LH FEL I+LT L KFGG Q   A F+A+KQ IE  VG +VPE+DG+ H LTLTVSDYK
Sbjct: 588  FLHNFELPISLTILQKFGGAQGVHAGFIAKKQRIEEIVGFRVPENDGKSHMLTLTVSDYK 647

Query: 2166 RRRGLL 2183
            RRRGLL
Sbjct: 648  RRRGLL 653