BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00015599
         (1016 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...   589   e-166
emb|CBI16226.3| unnamed protein product [Vitis vinifera]              585   e-165
ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s...   576   e-162
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...   576   e-162
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s...   573   e-161
ref|XP_004169848.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   572   e-161
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...   572   e-161
dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Ar...   566   e-159
ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana...   566   e-159
ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutr...   565   e-158
ref|XP_006279465.1| hypothetical protein CARUB_v10025743mg [Caps...   565   e-158
ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arab...   565   e-158
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [...   563   e-158
gb|EYU23204.1| hypothetical protein MIMGU_mgv1a000506mg [Mimulus...   559   e-157
gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus...   559   e-157
ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thali...   559   e-157
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...   558   e-156
ref|XP_007208145.1| hypothetical protein PRUPE_ppa024521mg, part...   557   e-156
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu...   555   e-155
ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao...   554   e-155

>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score =  589 bits (1519), Expect = e-166
 Identities = 285/338 (84%), Positives = 313/338 (92%)
 Frame = +3

Query: 3    VQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNI 182
            VQRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEV IPILMA+ L++PERV+ HNI
Sbjct: 341  VQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPILMAKILSYPERVSHHNI 400

Query: 183  EKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLF 362
            EKLRQC+ NG  KYPGAK + +PDGS  SLMF GRKR+ADELK GYIV+RHLEDGD+VLF
Sbjct: 401  EKLRQCILNGPFKYPGAKLIRYPDGSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLF 460

Query: 363  NRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTL 542
            NRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL L
Sbjct: 461  NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALML 520

Query: 543  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPT 722
            MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMD VDLPT
Sbjct: 521  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPT 580

Query: 723  PAIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTKSWKREKTMCPNDGFVYFHN 902
            PAI KP+ELWTGKQLF+VL+RP+ ++RVY+NLTVMEKT+ K  + ++TMCP+DGFVYF N
Sbjct: 581  PAIIKPVELWTGKQLFNVLLRPHANVRVYLNLTVMEKTYNKR-RGKETMCPSDGFVYFRN 639

Query: 903  SELISGQLGKATLGNGNKNGLFSILLRDYNEHAAASCM 1016
            SELISGQLGKATLGNGNK+GLFS+LLRDYN HAAA+CM
Sbjct: 640  SELISGQLGKATLGNGNKDGLFSVLLRDYNAHAAAACM 677


>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
          Length = 1819

 Score =  585 bits (1509), Expect = e-165
 Identities = 284/338 (84%), Positives = 312/338 (92%)
 Frame = +3

Query: 3    VQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNI 182
            VQRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEV IPILMA+ L++PERV+ HNI
Sbjct: 341  VQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPILMAKILSYPERVSHHNI 400

Query: 183  EKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLF 362
            EKLRQC+ NG  KYPGAK + +PDGS  SLMF GRKR+ADELK GYIV+RHLEDGD+VLF
Sbjct: 401  EKLRQCILNGPFKYPGAKLIRYPDGSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLF 460

Query: 363  NRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTL 542
            NRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL L
Sbjct: 461  NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALML 520

Query: 543  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPT 722
            MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMD VDLPT
Sbjct: 521  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPT 580

Query: 723  PAIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTKSWKREKTMCPNDGFVYFHN 902
            PAI K +ELWTGKQLF+VL+RP+ ++RVY+NLTVMEKT+ K  + ++TMCP+DGFVYF N
Sbjct: 581  PAIIKAMELWTGKQLFNVLLRPHANVRVYLNLTVMEKTYNKR-RGKETMCPSDGFVYFRN 639

Query: 903  SELISGQLGKATLGNGNKNGLFSILLRDYNEHAAASCM 1016
            SELISGQLGKATLGNGNK+GLFS+LLRDYN HAAA+CM
Sbjct: 640  SELISGQLGKATLGNGNKDGLFSVLLRDYNAHAAAACM 677


>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X2 [Solanum tuberosum]
          Length = 1243

 Score =  576 bits (1485), Expect = e-162
 Identities = 278/337 (82%), Positives = 307/337 (91%)
 Frame = +3

Query: 6    QRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNIE 185
            QRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEV IPILMAQ LT+PERV+ HNIE
Sbjct: 339  QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIE 398

Query: 186  KLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLFN 365
            KLRQCV NG NKYPGAKF+  PDGS++SLMF  RKR+ADELK GYIVDRHLEDGDIVLFN
Sbjct: 399  KLRQCVRNGPNKYPGAKFIRHPDGSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFN 458

Query: 366  RQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLM 545
            RQPSLHRMSIMSHRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LM
Sbjct: 459  RQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLM 518

Query: 546  GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTP 725
            GVQNNLCTPK+GEILVASTQDFLTSSFLITRKDTFY+RA+FSL+CSYMGD MD  DLP+P
Sbjct: 519  GVQNNLCTPKSGEILVASTQDFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSP 578

Query: 726  AIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTKSWKREKTMCPNDGFVYFHNS 905
            A  KP+ELWTGKQLF +L+RP + +RVYVNLTV EK+++    + +TMCP+DGFVYF NS
Sbjct: 579  AFIKPVELWTGKQLFHMLLRPYSKMRVYVNLTVTEKSYS---GKGETMCPSDGFVYFRNS 635

Query: 906  ELISGQLGKATLGNGNKNGLFSILLRDYNEHAAASCM 1016
            ELISGQLGKATLGNGNK+GL+S+LLRDY  HAAA+CM
Sbjct: 636  ELISGQLGKATLGNGNKDGLYSVLLRDYKSHAAATCM 672


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Solanum tuberosum]
          Length = 1394

 Score =  576 bits (1485), Expect = e-162
 Identities = 278/337 (82%), Positives = 307/337 (91%)
 Frame = +3

Query: 6    QRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNIE 185
            QRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEV IPILMAQ LT+PERV+ HNIE
Sbjct: 339  QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIE 398

Query: 186  KLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLFN 365
            KLRQCV NG NKYPGAKF+  PDGS++SLMF  RKR+ADELK GYIVDRHLEDGDIVLFN
Sbjct: 399  KLRQCVRNGPNKYPGAKFIRHPDGSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFN 458

Query: 366  RQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLM 545
            RQPSLHRMSIMSHRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LM
Sbjct: 459  RQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLM 518

Query: 546  GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTP 725
            GVQNNLCTPK+GEILVASTQDFLTSSFLITRKDTFY+RA+FSL+CSYMGD MD  DLP+P
Sbjct: 519  GVQNNLCTPKSGEILVASTQDFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSP 578

Query: 726  AIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTKSWKREKTMCPNDGFVYFHNS 905
            A  KP+ELWTGKQLF +L+RP + +RVYVNLTV EK+++    + +TMCP+DGFVYF NS
Sbjct: 579  AFIKPVELWTGKQLFHMLLRPYSKMRVYVNLTVTEKSYS---GKGETMCPSDGFVYFRNS 635

Query: 906  ELISGQLGKATLGNGNKNGLFSILLRDYNEHAAASCM 1016
            ELISGQLGKATLGNGNK+GL+S+LLRDY  HAAA+CM
Sbjct: 636  ELISGQLGKATLGNGNKDGLYSVLLRDYKSHAAATCM 672


>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
            lycopersicum]
          Length = 1390

 Score =  573 bits (1477), Expect = e-161
 Identities = 277/337 (82%), Positives = 306/337 (90%)
 Frame = +3

Query: 6    QRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNIE 185
            QRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEV IPILMAQ LT+PERV+ HNIE
Sbjct: 339  QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIE 398

Query: 186  KLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLFN 365
            KLRQCV NG NKYPGAKF+  PDG+++SLMF  RKRYADELK GYIVDRHLEDGDIVLFN
Sbjct: 399  KLRQCVRNGPNKYPGAKFIRHPDGNEMSLMFSSRKRYADELKFGYIVDRHLEDGDIVLFN 458

Query: 366  RQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLM 545
            RQPSLHRMSIMSHRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LM
Sbjct: 459  RQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLM 518

Query: 546  GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTP 725
            GVQNNLCTPK+GEILVASTQDFLTSSFLITRKDTFY+RA+FSL+CSYMGD MD  DLP+P
Sbjct: 519  GVQNNLCTPKSGEILVASTQDFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSP 578

Query: 726  AIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTKSWKREKTMCPNDGFVYFHNS 905
            A  KP+ELWTGKQLF VL+RP + +RVYVNLT+ EK+++    + +TMC +DGFVYF NS
Sbjct: 579  AFIKPVELWTGKQLFHVLLRPYSKMRVYVNLTLTEKSYS---GKGETMCSSDGFVYFRNS 635

Query: 906  ELISGQLGKATLGNGNKNGLFSILLRDYNEHAAASCM 1016
            ELISGQLGKATLGNGNK+GL+S+LLRDY  HAAA+CM
Sbjct: 636  ELISGQLGKATLGNGNKDGLYSVLLRDYESHAAATCM 672


>ref|XP_004169848.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit rpc1-like, partial [Cucumis sativus]
          Length = 693

 Score =  572 bits (1474), Expect = e-161
 Identities = 280/341 (82%), Positives = 305/341 (89%), Gaps = 3/341 (0%)
 Frame = +3

Query: 3    VQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNI 182
            VQRLKGKQGRFR NL  KRVEFTGRTVISPDPNLKITEV +PI MA+ LT+PERVT HNI
Sbjct: 35   VQRLKGKQGRFRGNLCGKRVEFTGRTVISPDPNLKITEVAVPIHMARILTYPERVTRHNI 94

Query: 183  EKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLF 362
            EKLRQCVSNG +KYPGA+ L   DGS  SLM  GRKR ADELK G IV+RHLEDGD+VLF
Sbjct: 95   EKLRQCVSNGPDKYPGARMLRHLDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLF 154

Query: 363  NRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTL 542
            NRQPSLHRMSIM HR ++MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+ L
Sbjct: 155  NRQPSLHRMSIMCHRVRVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILL 214

Query: 543  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPT 722
            MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMD VDLPT
Sbjct: 215  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPT 274

Query: 723  PAIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTK---SWKREKTMCPNDGFVY 893
            PA+ KPIELWTGKQLFSVLVRP+ S++VY+NLTV EK+++K   + K  +TMCPNDGFVY
Sbjct: 275  PALVKPIELWTGKQLFSVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVY 334

Query: 894  FHNSELISGQLGKATLGNGNKNGLFSILLRDYNEHAAASCM 1016
            F NSELISGQ+GKATLGNGNK+GL+S+LLRDY  HAAA CM
Sbjct: 335  FRNSELISGQVGKATLGNGNKDGLYSVLLRDYKAHAAAVCM 375


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score =  572 bits (1474), Expect = e-161
 Identities = 280/341 (82%), Positives = 305/341 (89%), Gaps = 3/341 (0%)
 Frame = +3

Query: 3    VQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNI 182
            VQRLKGKQGRFR NL  KRVEFTGRTVISPDPNLKITEV +PI MA+ LT+PERVT HNI
Sbjct: 337  VQRLKGKQGRFRGNLCGKRVEFTGRTVISPDPNLKITEVAVPIHMARILTYPERVTRHNI 396

Query: 183  EKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLF 362
            EKLRQCVSNG +KYPGA+ L   DGS  SLM  GRKR ADELK G IV+RHLEDGD+VLF
Sbjct: 397  EKLRQCVSNGPDKYPGARMLRHLDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLF 456

Query: 363  NRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTL 542
            NRQPSLHRMSIM HR ++MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+ L
Sbjct: 457  NRQPSLHRMSIMCHRVRVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILL 516

Query: 543  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPT 722
            MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMD VDLPT
Sbjct: 517  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPT 576

Query: 723  PAIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTK---SWKREKTMCPNDGFVY 893
            PA+ KPIELWTGKQLFSVLVRP+ S++VY+NLTV EK+++K   + K  +TMCPNDGFVY
Sbjct: 577  PALVKPIELWTGKQLFSVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVY 636

Query: 894  FHNSELISGQLGKATLGNGNKNGLFSILLRDYNEHAAASCM 1016
            F NSELISGQ+GKATLGNGNK+GL+S+LLRDY  HAAA CM
Sbjct: 637  FRNSELISGQVGKATLGNGNKDGLYSVLLRDYKAHAAAVCM 677


>dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
          Length = 1383

 Score =  566 bits (1458), Expect = e-159
 Identities = 279/339 (82%), Positives = 302/339 (89%), Gaps = 1/339 (0%)
 Frame = +3

Query: 3    VQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNI 182
            +QRLKGK GRFR NLS KRVEFTGRTVISPDPNLKITEVGIPILMAQ LTFPE V+ HNI
Sbjct: 343  LQRLKGKGGRFRANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNI 402

Query: 183  EKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLF 362
            EKLRQCV NG NKYPGA+ + +PDGS  +L+   RKR ADEL IG IVDRHL++GD+VLF
Sbjct: 403  EKLRQCVRNGPNKYPGARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLF 462

Query: 363  NRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTL 542
            NRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TL
Sbjct: 463  NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITL 522

Query: 543  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPT 722
            MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPT
Sbjct: 523  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPT 582

Query: 723  PAIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTKSWKR-EKTMCPNDGFVYFH 899
            P I KPIELWTGKQ+FSVL+RPN S+RVYV L V EK F K     ++TMC NDG+VYF 
Sbjct: 583  PTILKPIELWTGKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFR 642

Query: 900  NSELISGQLGKATLGNGNKNGLFSILLRDYNEHAAASCM 1016
            NSELISGQLGKATLGNGNK+GL+SILLRDYN HAAA CM
Sbjct: 643  NSELISGQLGKATLGNGNKDGLYSILLRDYNSHAAAVCM 681


>ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana]
            gi|332009886|gb|AED97269.1| nuclear RNA polymerase C1
            [Arabidopsis thaliana]
          Length = 1376

 Score =  566 bits (1458), Expect = e-159
 Identities = 279/339 (82%), Positives = 302/339 (89%), Gaps = 1/339 (0%)
 Frame = +3

Query: 3    VQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNI 182
            +QRLKGK GRFR NLS KRVEFTGRTVISPDPNLKITEVGIPILMAQ LTFPE V+ HNI
Sbjct: 343  LQRLKGKGGRFRANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNI 402

Query: 183  EKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLF 362
            EKLRQCV NG NKYPGA+ + +PDGS  +L+   RKR ADEL IG IVDRHL++GD+VLF
Sbjct: 403  EKLRQCVRNGPNKYPGARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLF 462

Query: 363  NRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTL 542
            NRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TL
Sbjct: 463  NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITL 522

Query: 543  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPT 722
            MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPT
Sbjct: 523  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPT 582

Query: 723  PAIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTKSWKR-EKTMCPNDGFVYFH 899
            P I KPIELWTGKQ+FSVL+RPN S+RVYV L V EK F K     ++TMC NDG+VYF 
Sbjct: 583  PTILKPIELWTGKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFR 642

Query: 900  NSELISGQLGKATLGNGNKNGLFSILLRDYNEHAAASCM 1016
            NSELISGQLGKATLGNGNK+GL+SILLRDYN HAAA CM
Sbjct: 643  NSELISGQLGKATLGNGNKDGLYSILLRDYNSHAAAVCM 681


>ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutrema salsugineum]
            gi|557101978|gb|ESQ42341.1| hypothetical protein
            EUTSA_v10012446mg [Eutrema salsugineum]
          Length = 1375

 Score =  565 bits (1456), Expect = e-158
 Identities = 277/338 (81%), Positives = 302/338 (89%)
 Frame = +3

Query: 3    VQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNI 182
            +QRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEVGIPILMA+ LTFPE V+ HNI
Sbjct: 344  LQRLKGKQGRFRANLSGKRVEYTGRTVISPDPNLKITEVGIPILMARILTFPECVSRHNI 403

Query: 183  EKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLF 362
            EKLRQCV NG NKYPGA+ + +PDGS  +L+   RKR ADEL IG IVDRHLE+GD VLF
Sbjct: 404  EKLRQCVRNGPNKYPGARSVRYPDGSSRTLVGDYRKRIADELTIGCIVDRHLEEGDAVLF 463

Query: 363  NRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTL 542
            NRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TL
Sbjct: 464  NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITL 523

Query: 543  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPT 722
            MGVQNNLCTPKNGEILVASTQDFLTSS+LITRKDTFYDRAAFSL+CSYMGD MD +DLPT
Sbjct: 524  MGVQNNLCTPKNGEILVASTQDFLTSSYLITRKDTFYDRAAFSLICSYMGDAMDAIDLPT 583

Query: 723  PAIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTKSWKREKTMCPNDGFVYFHN 902
            P I KPIELWTGKQ+FSVL+RPN S+RVYV L V EK F K  K ++TMC NDG+VYF N
Sbjct: 584  PTILKPIELWTGKQVFSVLLRPNASVRVYVTLNVKEKNFKKG-KYDETMCTNDGWVYFRN 642

Query: 903  SELISGQLGKATLGNGNKNGLFSILLRDYNEHAAASCM 1016
            SELISGQLGKATLGNGNK+GL+S+LLRDYN HAAA CM
Sbjct: 643  SELISGQLGKATLGNGNKDGLYSVLLRDYNSHAAAVCM 680


>ref|XP_006279465.1| hypothetical protein CARUB_v10025743mg [Capsella rubella]
            gi|482548169|gb|EOA12363.1| hypothetical protein
            CARUB_v10025743mg [Capsella rubella]
          Length = 1376

 Score =  565 bits (1456), Expect = e-158
 Identities = 278/339 (82%), Positives = 303/339 (89%), Gaps = 1/339 (0%)
 Frame = +3

Query: 3    VQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNI 182
            +QRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEVGIPILMA+ LTFPE V+ HNI
Sbjct: 343  LQRLKGKQGRFRANLSGKRVEYTGRTVISPDPNLKITEVGIPILMARILTFPECVSRHNI 402

Query: 183  EKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLF 362
            EKLRQCV NG NKYPGA+ + +PDGS  +L+   RKR ADEL IG IVDRHLE+GD VLF
Sbjct: 403  EKLRQCVRNGPNKYPGARNVRYPDGSSRALVGDYRKRIADELAIGCIVDRHLEEGDAVLF 462

Query: 363  NRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTL 542
            NRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TL
Sbjct: 463  NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITL 522

Query: 543  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPT 722
            MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPT
Sbjct: 523  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDAIDLPT 582

Query: 723  PAIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTK-SWKREKTMCPNDGFVYFH 899
            P + KPIELWTGKQ+FSVL+RPN S+RVYV L V EK F K +   ++TMC NDG+VYF 
Sbjct: 583  PTVLKPIELWTGKQIFSVLLRPNASVRVYVTLNVKEKNFKKGNHGFDETMCTNDGWVYFR 642

Query: 900  NSELISGQLGKATLGNGNKNGLFSILLRDYNEHAAASCM 1016
            NSELISGQLGKATLGNGNK+GL+SILLRDYN HAAA CM
Sbjct: 643  NSELISGQLGKATLGNGNKDGLYSILLRDYNSHAAAVCM 681


>ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
            lyrata] gi|297310500|gb|EFH40924.1| hypothetical protein
            ARALYDRAFT_496142 [Arabidopsis lyrata subsp. lyrata]
          Length = 1376

 Score =  565 bits (1455), Expect = e-158
 Identities = 279/339 (82%), Positives = 302/339 (89%), Gaps = 1/339 (0%)
 Frame = +3

Query: 3    VQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNI 182
            +QRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEVGIPILMA+ LTFPE V+ HNI
Sbjct: 343  LQRLKGKQGRFRANLSGKRVEYTGRTVISPDPNLKITEVGIPILMARILTFPECVSRHNI 402

Query: 183  EKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLF 362
            EKLRQCV NG NKYPGA+ + +PDGS  +L+   RKR ADEL IG IVDRHLE+GD VLF
Sbjct: 403  EKLRQCVRNGPNKYPGARNVRYPDGSSRTLVGDYRKRIADELTIGCIVDRHLEEGDAVLF 462

Query: 363  NRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTL 542
            NRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TL
Sbjct: 463  NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITL 522

Query: 543  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPT 722
            MGVQNNLCTPKNGEILVASTQDFLT+SFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPT
Sbjct: 523  MGVQNNLCTPKNGEILVASTQDFLTTSFLITRKDTFYDRAAFSLICSYMGDGMDAIDLPT 582

Query: 723  PAIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTKSWKR-EKTMCPNDGFVYFH 899
            P I KPIELWTGKQLFSVL+RPN S+RVYV L V EK F K     ++TMC NDG+VYF 
Sbjct: 583  PTILKPIELWTGKQLFSVLLRPNASVRVYVTLNVKEKNFKKGEHGFDETMCVNDGWVYFR 642

Query: 900  NSELISGQLGKATLGNGNKNGLFSILLRDYNEHAAASCM 1016
            NSELISGQLGKATLGNGNK+GL+SILLRDYN HAAA CM
Sbjct: 643  NSELISGQLGKATLGNGNKDGLYSILLRDYNSHAAAVCM 681


>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1394

 Score =  563 bits (1450), Expect = e-158
 Identities = 277/342 (80%), Positives = 303/342 (88%), Gaps = 4/342 (1%)
 Frame = +3

Query: 3    VQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNI 182
            VQRL GKQGRFRQNL+ KRVEFTGRTVISPDPNLKITEV IPI MA+ LT+PERVT HNI
Sbjct: 343  VQRLTGKQGRFRQNLAGKRVEFTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNI 402

Query: 183  EKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLF 362
            EKLRQCV+NGS KYPGA+ +T+PDGS   L    RKR A+ELK G IV RHLEDGD+VLF
Sbjct: 403  EKLRQCVNNGSYKYPGARMVTYPDGSSKMLTGNYRKRIAEELKSGCIVHRHLEDGDVVLF 462

Query: 363  NRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTL 542
            NRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA  L
Sbjct: 463  NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAFLL 522

Query: 543  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPT 722
            MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYM DGMD VDLPT
Sbjct: 523  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMNDGMDLVDLPT 582

Query: 723  PAIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTKSWKREK----TMCPNDGFV 890
            P++ KPIELWTGKQLFSVL+RP+ ++RVYVNL + EK +++  K  K    TMCPNDG+V
Sbjct: 583  PSVLKPIELWTGKQLFSVLLRPHANVRVYVNLILKEKNYSRPNKEHKKERETMCPNDGYV 642

Query: 891  YFHNSELISGQLGKATLGNGNKNGLFSILLRDYNEHAAASCM 1016
            YF NSELISGQLGKATLGNGNK+GL+SILLRDYN +AAA+CM
Sbjct: 643  YFRNSELISGQLGKATLGNGNKDGLYSILLRDYNAYAAATCM 684


>gb|EYU23204.1| hypothetical protein MIMGU_mgv1a000506mg [Mimulus guttatus]
          Length = 1109

 Score =  559 bits (1441), Expect = e-157
 Identities = 269/338 (79%), Positives = 302/338 (89%)
 Frame = +3

Query: 3    VQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNI 182
            VQRLKGK GRFR NLS KRVEFTGRTVISPDPNLKI EV +PILMAQ L++PERV+ HNI
Sbjct: 47   VQRLKGKHGRFRGNLSGKRVEFTGRTVISPDPNLKINEVAVPILMAQILSYPERVSHHNI 106

Query: 183  EKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLF 362
            E+LRQCV NG  KYPGAKF+  PDG+++SL    R R+AD+LK GYIV RHL+DGDI+LF
Sbjct: 107  ERLRQCVRNGPTKYPGAKFIKHPDGTEISLTSKVRHRHADDLKYGYIVCRHLQDGDIILF 166

Query: 363  NRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTL 542
            NRQPSLHRMSIMSHRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL L
Sbjct: 167  NRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALML 226

Query: 543  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPT 722
            MGVQNNLCTPKNGEILVASTQDFLTSS+LITRKDTFYDRA+FSL+CSYMGD MD +DLPT
Sbjct: 227  MGVQNNLCTPKNGEILVASTQDFLTSSYLITRKDTFYDRASFSLICSYMGDAMDPIDLPT 286

Query: 723  PAIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTKSWKREKTMCPNDGFVYFHN 902
            PA+ KP+ELWTGKQLFS+L+RP+  +RVYVNLTV EK + KS    +TMCP DGFVY  N
Sbjct: 287  PALVKPVELWTGKQLFSILLRPHAKMRVYVNLTVAEKNYGKS---GETMCPKDGFVYIRN 343

Query: 903  SELISGQLGKATLGNGNKNGLFSILLRDYNEHAAASCM 1016
            SELISGQLGKATLGNG+K+GL+S+LLRDY+ HAAA+CM
Sbjct: 344  SELISGQLGKATLGNGSKDGLYSVLLRDYSAHAAATCM 381


>gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus guttatus]
          Length = 1394

 Score =  559 bits (1440), Expect = e-157
 Identities = 270/338 (79%), Positives = 302/338 (89%)
 Frame = +3

Query: 3    VQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNI 182
            VQRLKGKQGRFR NLS KRVEFTGRTVISPDPNLKI EV +PILMAQ L++PERV+ HNI
Sbjct: 343  VQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKINEVAVPILMAQILSYPERVSHHNI 402

Query: 183  EKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLF 362
            E+LRQCV NG  KYPGAKF+  PDG+++SL    R R AD+LK GYIV RHL+DGDI+LF
Sbjct: 403  ERLRQCVRNGPTKYPGAKFIKHPDGTEISLTGKIRHRAADDLKYGYIVCRHLQDGDIILF 462

Query: 363  NRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTL 542
            NRQPSLHRMSIMSHRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL L
Sbjct: 463  NRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALML 522

Query: 543  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPT 722
            MGVQNNLCTPKNGEILVASTQDFLTSS+LITRKDTFYDRA+FSL+CSYMGD MD +DLPT
Sbjct: 523  MGVQNNLCTPKNGEILVASTQDFLTSSYLITRKDTFYDRASFSLICSYMGDAMDPIDLPT 582

Query: 723  PAIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTKSWKREKTMCPNDGFVYFHN 902
            PA+ KP+ELWTGKQLFS+L+RP+  +RVYVNLTV EK + KS    +TMCP DGFVY  N
Sbjct: 583  PALVKPVELWTGKQLFSILLRPHAKMRVYVNLTVAEKNYGKS---GETMCPKDGFVYIRN 639

Query: 903  SELISGQLGKATLGNGNKNGLFSILLRDYNEHAAASCM 1016
            SELISGQLGKATLGNG+K+GL+S+LLRDY+ HAAA+CM
Sbjct: 640  SELISGQLGKATLGNGSKDGLYSVLLRDYSAHAAATCM 677


>ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
            gi|332009887|gb|AED97270.1| nuclear RNA polymerase C1
            [Arabidopsis thaliana]
          Length = 1391

 Score =  559 bits (1440), Expect = e-157
 Identities = 279/346 (80%), Positives = 302/346 (87%), Gaps = 8/346 (2%)
 Frame = +3

Query: 3    VQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNI 182
            +QRLKGK GRFR NLS KRVEFTGRTVISPDPNLKITEVGIPILMAQ LTFPE V+ HNI
Sbjct: 353  LQRLKGKGGRFRANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNI 412

Query: 183  EKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLF 362
            EKLRQCV NG NKYPGA+ + +PDGS  +L+   RKR ADEL IG IVDRHL++GD+VLF
Sbjct: 413  EKLRQCVRNGPNKYPGARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLF 472

Query: 363  NRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTL 542
            NRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TL
Sbjct: 473  NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITL 532

Query: 543  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPT 722
            MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPT
Sbjct: 533  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPT 592

Query: 723  PAIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTKSWKR-EKTMCPNDGFVYFH 899
            P I KPIELWTGKQ+FSVL+RPN S+RVYV L V EK F K     ++TMC NDG+VYF 
Sbjct: 593  PTILKPIELWTGKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFR 652

Query: 900  NSELISGQLGKAT-------LGNGNKNGLFSILLRDYNEHAAASCM 1016
            NSELISGQLGKAT       LGNGNK+GL+SILLRDYN HAAA CM
Sbjct: 653  NSELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAAVCM 698


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            rpc1-like isoform X2 [Citrus sinensis]
          Length = 1404

 Score =  558 bits (1437), Expect = e-156
 Identities = 273/346 (78%), Positives = 299/346 (86%), Gaps = 8/346 (2%)
 Frame = +3

Query: 3    VQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNI 182
            VQRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEV IPI MA+ LT+PERV+ HNI
Sbjct: 345  VQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNI 404

Query: 183  EKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLF 362
            EKLRQC+ NG +KYPGA+ + +PDG+   L    R + A ELK G IVDRHLEDGD+VLF
Sbjct: 405  EKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLF 464

Query: 363  NRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTL 542
            NRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL L
Sbjct: 465  NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 524

Query: 543  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPT 722
            MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMC YMGDGMD VDLPT
Sbjct: 525  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPT 584

Query: 723  PAIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTKSWKRE--------KTMCPN 878
            PAI KP+ELWTGKQLFSVL+RP+ ++RVYVNLTV EKT++    R         +TMCPN
Sbjct: 585  PAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 644

Query: 879  DGFVYFHNSELISGQLGKATLGNGNKNGLFSILLRDYNEHAAASCM 1016
            DGFVYF NSELISGQLGKATLGNGNK+GL+S+LLRDY  HA + CM
Sbjct: 645  DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCM 690


>ref|XP_007208145.1| hypothetical protein PRUPE_ppa024521mg, partial [Prunus persica]
            gi|462403787|gb|EMJ09344.1| hypothetical protein
            PRUPE_ppa024521mg, partial [Prunus persica]
          Length = 867

 Score =  557 bits (1435), Expect = e-156
 Identities = 274/339 (80%), Positives = 302/339 (89%), Gaps = 1/339 (0%)
 Frame = +3

Query: 3    VQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNI 182
            VQRLKGK GRFR NLS KRVE+TGRTVISPDPNLKITEVG+PI MAQ LT+PERV+ HNI
Sbjct: 348  VQRLKGKGGRFRGNLSGKRVEYTGRTVISPDPNLKITEVGVPIKMAQILTYPERVSHHNI 407

Query: 183  EKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLF 362
            EKLRQCVSNG +KYPGA+ L  PDG++ SL    RK  AD LK G IV+RHLEDGDIVLF
Sbjct: 408  EKLRQCVSNGPDKYPGARMLRNPDGTEWSLKV-NRKNAADGLKYGDIVERHLEDGDIVLF 466

Query: 363  NRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTL 542
            NRQPSLHRMSIM HRAK+MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+ L
Sbjct: 467  NRQPSLHRMSIMCHRAKVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAVML 526

Query: 543  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPT 722
            MGVQNNLCTPKNGE+LVASTQDFLTSSFLITRKDTFYDRA+FSLMCSYMGDG D VDLPT
Sbjct: 527  MGVQNNLCTPKNGEVLVASTQDFLTSSFLITRKDTFYDRASFSLMCSYMGDGTDPVDLPT 586

Query: 723  PAIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTKSWK-REKTMCPNDGFVYFH 899
            PA+ KPIELWTGKQLFSVLVRPN+++RVY+N TV EK+++K+     + MCPNDGFVYF 
Sbjct: 587  PAVIKPIELWTGKQLFSVLVRPNSNVRVYLNFTVNEKSYSKTEDGGPEAMCPNDGFVYFR 646

Query: 900  NSELISGQLGKATLGNGNKNGLFSILLRDYNEHAAASCM 1016
            NSELI+GQLGK TLGNGNK+GL+S+LLRDY  HAAASCM
Sbjct: 647  NSELIAGQLGKGTLGNGNKDGLYSVLLRDYKAHAAASCM 685


>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
            communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
            polymerase III largest subunit, putative [Ricinus
            communis]
          Length = 1383

 Score =  555 bits (1430), Expect = e-155
 Identities = 278/343 (81%), Positives = 300/343 (87%), Gaps = 5/343 (1%)
 Frame = +3

Query: 3    VQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNI 182
            VQRLKGKQGRFR NLS KRVEFTGRTVISPDPNLKITEV IPI MA+ L++PERV+ HNI
Sbjct: 314  VQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKITEVAIPIHMARILSYPERVSHHNI 373

Query: 183  EKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLF 362
            EKLRQ VSNG  KYPGA  + +PDGS   L+   RK  A+EL  G IVDRHLEDGD+VLF
Sbjct: 374  EKLRQLVSNGPQKYPGASTVRYPDGSSKRLIGSYRKTIAEELTFGCIVDRHLEDGDVVLF 433

Query: 363  NRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTL 542
            NRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL L
Sbjct: 434  NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 493

Query: 543  MGV-QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLP 719
            MGV QNNLCTPKNGEILVASTQDFLTSSFLITR+DTFYDRAAFSLMCSYM DGMD +DLP
Sbjct: 494  MGVSQNNLCTPKNGEILVASTQDFLTSSFLITRRDTFYDRAAFSLMCSYMNDGMDLIDLP 553

Query: 720  TPAIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTKSWKREK----TMCPNDGF 887
            TPAI KPIELWTGKQLFSVL+RPN ++RVYVNL V EK ++K  K +K    TMCPNDGF
Sbjct: 554  TPAILKPIELWTGKQLFSVLLRPNANVRVYVNLIVREKIYSKPKKGDKREKETMCPNDGF 613

Query: 888  VYFHNSELISGQLGKATLGNGNKNGLFSILLRDYNEHAAASCM 1016
            VY  NSELISGQLGKATLGNGNK+GL+SILLRDYN HAAA+CM
Sbjct: 614  VYIRNSELISGQLGKATLGNGNKDGLYSILLRDYNPHAAATCM 656


>ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao]
            gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase
            [Theobroma cacao]
          Length = 1395

 Score =  554 bits (1427), Expect = e-155
 Identities = 271/346 (78%), Positives = 302/346 (87%), Gaps = 8/346 (2%)
 Frame = +3

Query: 3    VQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGIPILMAQTLTFPERVTSHNI 182
            VQR+KGK GRFR NLS KRVE+TGRTVISPDPNLKITEV IPI MA+ LT+PERV++HNI
Sbjct: 338  VQRIKGKHGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSNHNI 397

Query: 183  EKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVLF 362
            EKLRQCV NG +KYPGA+ + +PDGS   L+   RKR ADELK G +VDRHLEDGDIVLF
Sbjct: 398  EKLRQCVRNGPSKYPGARMVRYPDGSARLLIGDYRKRLADELKFGCVVDRHLEDGDIVLF 457

Query: 363  NRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTL 542
            NRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL L
Sbjct: 458  NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALML 517

Query: 543  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPT 722
            MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD FYDRAAFSL+CSYMGDGMD +DLPT
Sbjct: 518  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDIFYDRAAFSLICSYMGDGMDLIDLPT 577

Query: 723  PAIFKPIELWTGKQLFSVLVRPNTSLRVYVNLTVMEKTFTKSWKRE--------KTMCPN 878
            PA+ KPIELWTGKQLFSVL+RP+ S+RVY+NL V E+ ++K   +         +TMCP+
Sbjct: 578  PALLKPIELWTGKQLFSVLLRPHASVRVYLNLIVKERNYSKKIIKRIGNKEIEVETMCPD 637

Query: 879  DGFVYFHNSELISGQLGKATLGNGNKNGLFSILLRDYNEHAAASCM 1016
            DGFVY  NSELI GQLGKATLGNGNK+GL+S+LLRDYN HAAA+CM
Sbjct: 638  DGFVYIRNSELICGQLGKATLGNGNKDGLYSVLLRDYNAHAAAACM 683