BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00015038
         (1106 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containi...   514   e-143
emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]   514   e-143
ref|XP_006488968.1| PREDICTED: pentatricopeptide repeat-containi...   496   e-138
ref|XP_006445545.1| hypothetical protein CICLE_v10014960mg [Citr...   478   e-132
ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containi...   467   e-129
ref|XP_007208240.1| hypothetical protein PRUPE_ppa016950mg, part...   452   e-124
gb|EXB88915.1| hypothetical protein L484_003611 [Morus notabilis]     451   e-124
ref|XP_002303975.2| pentatricopeptide repeat-containing family p...   445   e-122
ref|XP_004294930.1| PREDICTED: pentatricopeptide repeat-containi...   430   e-118
ref|XP_007014654.1| Pentatricopeptide repeat (PPR) superfamily p...   421   e-115
ref|XP_002523384.1| pentatricopeptide repeat-containing protein,...   415   e-113
ref|XP_003556973.2| PREDICTED: pentatricopeptide repeat-containi...   411   e-112
ref|XP_007153011.1| hypothetical protein PHAVU_003G000200g [Phas...   397   e-108
ref|XP_002864446.1| pentatricopeptide repeat-containing protein ...   385   e-104
ref|XP_006280289.1| hypothetical protein CARUB_v10026213mg [Caps...   379   e-102
ref|NP_200442.1| pentatricopeptide repeat-containing protein [Ar...   374   e-101
ref|XP_006344590.1| PREDICTED: pentatricopeptide repeat-containi...   367   4e-99
ref|XP_003589826.1| Pentatricopeptide repeat-containing protein ...   365   1e-98
ref|XP_004498089.1| PREDICTED: pentatricopeptide repeat-containi...   365   2e-98
ref|XP_006358733.1| PREDICTED: pentatricopeptide repeat-containi...   365   2e-98

>ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
            [Vitis vinifera]
          Length = 576

 Score =  514 bits (1324), Expect = e-143
 Identities = 247/367 (67%), Positives = 300/367 (81%)
 Frame = +2

Query: 5    SLLNRCCNLKHICQTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKIQPDVY 184
            SLL +C NLKH+ QTH FM+ RG DQDN L+S+FIE C +LGFS Y +S+FTHK +PD+Y
Sbjct: 46   SLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIY 105

Query: 185  LYNTVIKALSQTDSSKQAILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQS 364
            LYNT+IKALS  + + +AILLYN+I  +  R DTYS+PF LKAVVRL  + VGR+IHCQ+
Sbjct: 106  LYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQA 165

Query: 365  IGTGLDLDVQVITALIRMYSSCGCVTDARKLFDRTNSRDVVLWNAMVAGYAKVGDIDNAR 544
            IGTGL  D+ V+TALI+MYSSCGCV++AR+LFD    RDV  WNAMVAGYAKVGD+DNAR
Sbjct: 166  IGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNAR 225

Query: 545  DLFELMPERNVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLAALSACADLG 724
             LFE MPERNVISWTA+IAGYAQ ++P++AIT+F+RM LE+VEPDEIAMLAALSACA LG
Sbjct: 226  HLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLG 285

Query: 725  ALDLGQWIHNYIDKHGFFGIVPLKNALIDMYAKSGNIKKALEVFESMKHRSVITWTTIIX 904
            AL+LG+WIHNYIDKHG   IVPL NALIDMYAK G I+KALEVF++M+H+SVITWT++I 
Sbjct: 286  ALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMID 345

Query: 905  XXXXXXXXXXXXXMFSRMDRARIKPNEITFIAILHACSHVGLVDMGWWYFNNMGSRFGME 1084
                         MFS M+R RIKPNEITF+AIL AC HVGLV+MG WYF  MG+++G++
Sbjct: 346  GLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIK 405

Query: 1085 PNIEHYG 1105
            P I+HYG
Sbjct: 406  PKIQHYG 412


>emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  514 bits (1324), Expect = e-143
 Identities = 247/367 (67%), Positives = 300/367 (81%)
 Frame = +2

Query: 5    SLLNRCCNLKHICQTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKIQPDVY 184
            SLL +C NLKH+ QTH FM+ RG DQDN L+S+FIE C +LGFS Y +S+FTHK +PD+Y
Sbjct: 46   SLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIY 105

Query: 185  LYNTVIKALSQTDSSKQAILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQS 364
            LYNT+IKALS  + + +AILLYN+I  +  R DTYS+PF LKAVVRL  + VGR+IHCQ+
Sbjct: 106  LYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQA 165

Query: 365  IGTGLDLDVQVITALIRMYSSCGCVTDARKLFDRTNSRDVVLWNAMVAGYAKVGDIDNAR 544
            IGTGL  D+ V+TALI+MYSSCGCV++AR+LFD    RDV  WNAMVAGYAKVGD+DNAR
Sbjct: 166  IGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNAR 225

Query: 545  DLFELMPERNVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLAALSACADLG 724
             LFE MPERNVISWTA+IAGYAQ ++P++AIT+F+RM LE+VEPDEIAMLAALSACA LG
Sbjct: 226  HLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLG 285

Query: 725  ALDLGQWIHNYIDKHGFFGIVPLKNALIDMYAKSGNIKKALEVFESMKHRSVITWTTIIX 904
            AL+LG+WIHNYIDKHG   IVPL NALIDMYAK G I+KALEVF++M+H+SVITWT++I 
Sbjct: 286  ALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMID 345

Query: 905  XXXXXXXXXXXXXMFSRMDRARIKPNEITFIAILHACSHVGLVDMGWWYFNNMGSRFGME 1084
                         MFS M+R RIKPNEITF+AIL AC HVGLV+MG WYF  MG+++G++
Sbjct: 346  GLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIK 405

Query: 1085 PNIEHYG 1105
            P I+HYG
Sbjct: 406  PKIQHYG 412


>ref|XP_006488968.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like
            isoform X1 [Citrus sinensis]
            gi|568871598|ref|XP_006488969.1| PREDICTED:
            pentatricopeptide repeat-containing protein
            At5g56310-like isoform X2 [Citrus sinensis]
          Length = 564

 Score =  496 bits (1276), Expect = e-138
 Identities = 237/365 (64%), Positives = 296/365 (81%), Gaps = 2/365 (0%)
 Frame = +2

Query: 17   RCCNLKHICQTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKIQPDVYLYNT 196
            +C ++KH+   HGFM+ RG DQ+N L+S+FI+ C +LGFSDY YS+FTHK +PDVYLYNT
Sbjct: 44   KCADIKHLFAAHGFMIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNT 103

Query: 197  VIKALSQTDSSKQAILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQSIGTG 376
             IKAL QTD+   A++LYNKIQ +  RPD YS PF LKAVV+LS +++GREIHCQ++GTG
Sbjct: 104  TIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTG 163

Query: 377  LDLDVQVITALIRMYSSCGCVTDARKLFDRTNSR--DVVLWNAMVAGYAKVGDIDNARDL 550
            LD DV V+ ALI+MY+SC C+ DARK+FD  + R  +V +WN MVAGYAKVGD++NAR L
Sbjct: 164  LDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARAL 223

Query: 551  FELMPERNVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLAALSACADLGAL 730
            FELM E+NVISWT +IAGYAQ +QP++AIT+F+RM +E+V+PDEIAMLAALSACA LGA+
Sbjct: 224  FELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAV 283

Query: 731  DLGQWIHNYIDKHGFFGIVPLKNALIDMYAKSGNIKKALEVFESMKHRSVITWTTIIXXX 910
            +LG+WIHNYI+++G   IVPL NALIDMYAKSG I KAL+VFE+MK++SVITWTT+I   
Sbjct: 284  ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGL 343

Query: 911  XXXXXXXXXXXMFSRMDRARIKPNEITFIAILHACSHVGLVDMGWWYFNNMGSRFGMEPN 1090
                       MFSRM+RAR+KPNEITFIAIL AC HVGLV++G  YFN M SR+G+EP 
Sbjct: 344  ALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK 403

Query: 1091 IEHYG 1105
            IE YG
Sbjct: 404  IEQYG 408


>ref|XP_006445545.1| hypothetical protein CICLE_v10014960mg [Citrus clementina]
            gi|557548156|gb|ESR58785.1| hypothetical protein
            CICLE_v10014960mg [Citrus clementina]
          Length = 510

 Score =  478 bits (1230), Expect = e-132
 Identities = 231/351 (65%), Positives = 286/351 (81%), Gaps = 2/351 (0%)
 Frame = +2

Query: 59   MVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKIQPDVYLYNTVIKALSQTDSSKQA 238
            M+ RG DQ+N L+S+FI+ C +LGFSDY YS+FTHK +PDVYLYNT IKAL QTD+   A
Sbjct: 1    MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNA 60

Query: 239  ILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQSIGTGLDLDVQVITALIRM 418
            ++LYNKIQ +  RPD YS PF LKAVV+LS +++GREIHCQ++GTGLD DV V+ ALI+M
Sbjct: 61   VILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQM 120

Query: 419  YSSCGCVTDARKLFDRTNSR--DVVLWNAMVAGYAKVGDIDNARDLFELMPERNVISWTA 592
            Y+SC C+ DARK+FD  + R  +V +WN MVAGYAKVGD++NAR LFELM E+NVISWT 
Sbjct: 121  YASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTT 180

Query: 593  MIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLAALSACADLGALDLGQWIHNYIDKHG 772
            +IAGYAQ +QP++AIT+F+RM +E+V+PDEIAMLAALSACA LGA++LG+WIHNYI+++G
Sbjct: 181  LIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYG 240

Query: 773  FFGIVPLKNALIDMYAKSGNIKKALEVFESMKHRSVITWTTIIXXXXXXXXXXXXXXMFS 952
               IVPL NALIDMYAKSG I KAL+VFE+MK++SVITWTT+I              MFS
Sbjct: 241  LNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFS 300

Query: 953  RMDRARIKPNEITFIAILHACSHVGLVDMGWWYFNNMGSRFGMEPNIEHYG 1105
            RM+RAR+KPNEITFIAIL AC HVGLV++G  YFN M SR+G+EP IE YG
Sbjct: 301  RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG 351


>ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like
            [Cucumis sativus] gi|449493602|ref|XP_004159370.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At5g56310-like [Cucumis sativus]
          Length = 548

 Score =  467 bits (1202), Expect = e-129
 Identities = 224/367 (61%), Positives = 287/367 (78%)
 Frame = +2

Query: 5    SLLNRCCNLKHICQTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKIQPDVY 184
            SLL+ C +  H+ Q HGFM+ R  DQDN  +S+FI+ C +LG S Y +S+F++K  PD+ 
Sbjct: 29   SLLSNCRHHLHLYQIHGFMLHRALDQDNLFLSQFIDACTSLGLSSYAFSIFSNKTHPDLR 88

Query: 185  LYNTVIKALSQTDSSKQAILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQS 364
            LYNT IKALS+T S   AI LY +I++ G RPD+YSIP  LKAVV+LS V+VGR+IH Q+
Sbjct: 89   LYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQT 148

Query: 365  IGTGLDLDVQVITALIRMYSSCGCVTDARKLFDRTNSRDVVLWNAMVAGYAKVGDIDNAR 544
            + + LD+DV V T+LI+MYSSCG V+DARKLFD    +DV LWNAMVAGY KVG++ +AR
Sbjct: 149  VSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSAR 208

Query: 545  DLFELMPERNVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLAALSACADLG 724
             +F  MP+RNVISWT +IAGYAQTN+P +AI +F++M LE+VEPDEIAMLA LSACADLG
Sbjct: 209  KVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLG 268

Query: 725  ALDLGQWIHNYIDKHGFFGIVPLKNALIDMYAKSGNIKKALEVFESMKHRSVITWTTIIX 904
            AL+LG+WIHNYI+KHG   IV L NALIDMYAKSGNI++ALEVFE+MK +SVITW+T+I 
Sbjct: 269  ALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIA 328

Query: 905  XXXXXXXXXXXXXMFSRMDRARIKPNEITFIAILHACSHVGLVDMGWWYFNNMGSRFGME 1084
                         MF RM++A+++PNE+TF+AIL ACSHVG+VD+G +YF+ M S + +E
Sbjct: 329  ALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIE 388

Query: 1085 PNIEHYG 1105
            P IEHYG
Sbjct: 389  PKIEHYG 395


>ref|XP_007208240.1| hypothetical protein PRUPE_ppa016950mg, partial [Prunus persica]
            gi|462403882|gb|EMJ09439.1| hypothetical protein
            PRUPE_ppa016950mg, partial [Prunus persica]
          Length = 532

 Score =  452 bits (1163), Expect = e-124
 Identities = 231/377 (61%), Positives = 280/377 (74%), Gaps = 12/377 (3%)
 Frame = +2

Query: 11   LNRCCNLKHICQTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKI-QPDVYL 187
            L +C NLKHI Q HGFMV  G  QDN  + + I+ C +LGFSDY YSVFT    QP +YL
Sbjct: 3    LRQCSNLKHIEQAHGFMVAGGLHQDNRTLPRLIQACSSLGFSDYAYSVFTRTHGQPSIYL 62

Query: 188  YNTVIKALSQTDSSKQAILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKV----GREIH 355
            YNT+IKA + + S   AI LYN+IQ+A  RPDTYS PF LKAVVRL+  +V    G +IH
Sbjct: 63   YNTIIKAKALSPSPSHAISLYNRIQLAALRPDTYSFPFVLKAVVRLAPPQVQRLVGAQIH 122

Query: 356  CQSIGTGLDLDVQVITALIRMYSSCGCVTDARKLFDRTNS-----RDVVLWNAMVAGYAK 520
            C  IG G D+D  V+TALI MYSSCGCV+DAR LFD   +     RDV LWNAM+AGYAK
Sbjct: 123  CHIIGIGFDMDASVLTALIHMYSSCGCVSDARTLFDGAAAFAFAFRDVALWNAMIAGYAK 182

Query: 521  VGDIDNARDLFELMPER--NVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAML 694
             GD+DNAR LFELMP R  NVISWTA+IAGYAQ ++P +AITVF+RM LE+V+PDEI+ML
Sbjct: 183  SGDVDNARHLFELMPPRIRNVISWTALIAGYAQVDRPHEAITVFRRMQLENVQPDEISML 242

Query: 695  AALSACADLGALDLGQWIHNYIDKHGFFGIVPLKNALIDMYAKSGNIKKALEVFESMKHR 874
            AALSACA LGAL LG+WIHNYI+KH F  +V L NALIDMYAKSGNI KAL+VFE+ K +
Sbjct: 243  AALSACAHLGALHLGEWIHNYIEKHEFRKLVSLNNALIDMYAKSGNITKALQVFENTKCK 302

Query: 875  SVITWTTIIXXXXXXXXXXXXXXMFSRMDRARIKPNEITFIAILHACSHVGLVDMGWWYF 1054
            +V+TWTT+I              MF++M+R +IKPN+ITFIAIL ACSH  LV++G WYF
Sbjct: 303  TVVTWTTMIAGLALHGLGREALEMFAQMERVKIKPNDITFIAILSACSHGRLVEIGHWYF 362

Query: 1055 NNMGSRFGMEPNIEHYG 1105
            + M S++ ++P I HYG
Sbjct: 363  SIMVSKYRIKPKIVHYG 379


>gb|EXB88915.1| hypothetical protein L484_003611 [Morus notabilis]
          Length = 524

 Score =  451 bits (1159), Expect = e-124
 Identities = 216/368 (58%), Positives = 279/368 (75%), Gaps = 1/368 (0%)
 Frame = +2

Query: 5    SLLNRCCNLKHICQTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTH-KIQPDV 181
            SLL +C + KHI QTHG ++PRG   DN +++ FI+ C +LG+S Y Y VFTH   + ++
Sbjct: 8    SLLKQCSSFKHIRQTHGVLIPRGLRNDNLILAHFIQSCSSLGYSSYAYLVFTHHNKRHNI 67

Query: 182  YLYNTVIKALSQTDSSKQAILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQ 361
            YL+NT+I  +S ++    A+ LYNK+ + G RPDTY+ PF LKAV++LS V+VGR+IHCQ
Sbjct: 68   YLFNTMINVVSPSE----AVSLYNKLLLTGLRPDTYTFPFVLKAVIKLSAVEVGRQIHCQ 123

Query: 362  SIGTGLDLDVQVITALIRMYSSCGCVTDARKLFDRTNSRDVVLWNAMVAGYAKVGDIDNA 541
            ++ TGLD DV  +TAL+RMYS CG + D+R++FD  +  DV LWNAMVAGYAK GD+DNA
Sbjct: 124  ALRTGLDSDVNAVTALVRMYSCCGSILDSRRMFDEMSFWDVALWNAMVAGYAKAGDVDNA 183

Query: 542  RDLFELMPERNVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLAALSACADL 721
            R +FE MPERN+ISWT++IAGYAQ  +P +AI +F+RM LE+VEPDE+A+LA LSACA L
Sbjct: 184  RKVFEQMPERNLISWTSVIAGYAQMKRPEEAILLFKRMLLENVEPDEVAILALLSACAHL 243

Query: 722  GALDLGQWIHNYIDKHGFFGIVPLKNALIDMYAKSGNIKKALEVFESMKHRSVITWTTII 901
            G+L LG+ IHNYI K GF   + L NALIDMY KSG+I+KAL VFESMK RSV+TWTT++
Sbjct: 244  GSLRLGERIHNYIQKRGFSRKLRLNNALIDMYVKSGSIRKALNVFESMKERSVVTWTTML 303

Query: 902  XXXXXXXXXXXXXXMFSRMDRARIKPNEITFIAILHACSHVGLVDMGWWYFNNMGSRFGM 1081
                          MFSRM+ A +KPN+ITFIA+L AC H GLV+MG WYFNNM SR+G+
Sbjct: 304  AGLALHGLGREASVMFSRMESAVVKPNDITFIAVLSACRHAGLVEMGRWYFNNMDSRYGI 363

Query: 1082 EPNIEHYG 1105
            +P IEHYG
Sbjct: 364  QPKIEHYG 371


>ref|XP_002303975.2| pentatricopeptide repeat-containing family protein [Populus
            trichocarpa] gi|550343649|gb|EEE78954.2|
            pentatricopeptide repeat-containing family protein
            [Populus trichocarpa]
          Length = 543

 Score =  445 bits (1144), Expect = e-122
 Identities = 226/374 (60%), Positives = 278/374 (74%), Gaps = 7/374 (1%)
 Frame = +2

Query: 5    SLLNRCCNLKHICQTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKIQ-PDV 181
            SL+    +LKHI QTH FM+ R  D DN L+S+FI  C +LGF  Y YS+FT     PD+
Sbjct: 18   SLIAHSSHLKHIHQTHAFMLLRALDTDNLLLSRFIHACSSLGFYSYAYSLFTSITHAPDI 77

Query: 182  YLYNTVIKALSQTDSS-KQAILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHC 358
            YLYN +IKALS + +  K +I LYN IQ+AG RPD+YS PFALKAV R S ++ GR++H 
Sbjct: 78   YLYNNIIKALSSSPTHPKASIFLYNNIQLAGLRPDSYSFPFALKAVTRFSSIQTGRQLHS 137

Query: 359  QSIGTGLDLDVQVITALIRMYSS--CGCVTDARKLFD--RTNSRDVVLWNAMVAGYAKVG 526
            QSI  GL  D+ V+TA ++MYSS   GC+ DARK+FD    ++ DV LWNAM+ GYAK G
Sbjct: 138  QSIRFGLHSDLHVLTAFVQMYSSFGSGCICDARKMFDGMSMSTGDVALWNAMLNGYAKHG 197

Query: 527  DIDNARDLFELMPERNVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLAALS 706
            D+ NARDLFE MP+RNVISWTA+I GYAQ N+P  AI +F+RM LE+VEPDEIAML AL+
Sbjct: 198  DLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALT 257

Query: 707  ACADLGALDLGQWIHNYIDKHGFFGI-VPLKNALIDMYAKSGNIKKALEVFESMKHRSVI 883
            ACA LGAL+LG+WI +YID+ G     +PL NALIDMYAKSG+IK AL+VFE+M H+++I
Sbjct: 258  ACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTII 317

Query: 884  TWTTIIXXXXXXXXXXXXXXMFSRMDRARIKPNEITFIAILHACSHVGLVDMGWWYFNNM 1063
            TWTT+I              MFSRM+RAR+KPN+ITFIAIL ACSHVGLV  G WYFN M
Sbjct: 318  TWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAILSACSHVGLVQTGRWYFNRM 377

Query: 1064 GSRFGMEPNIEHYG 1105
             SR+G+EP IEHYG
Sbjct: 378  ISRYGIEPKIEHYG 391


>ref|XP_004294930.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like
            [Fragaria vesca subsp. vesca]
          Length = 518

 Score =  430 bits (1106), Expect = e-118
 Identities = 222/368 (60%), Positives = 266/368 (72%), Gaps = 2/368 (0%)
 Frame = +2

Query: 8    LLNRCCNLKHICQTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKIQPDVYL 187
            L+  C +LKHI Q HG MV  G ++     ++FIE C +LGFS Y  SVFT   QP++ L
Sbjct: 7    LVRGCYSLKHIQQAHGLMVTLGLEE-----ARFIEACSSLGFSSYACSVFTRNPQPNINL 61

Query: 188  YNTVIKALSQTDSSKQAILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQSI 367
            YNT+IKAL  +D    AI +Y  IQ AG RPDTYS+P  LKAVVRL  V +GR++HC SI
Sbjct: 62   YNTMIKALPPSD----AISVYTSIQAAGLRPDTYSVPLVLKAVVRLGAVGIGRQVHCHSI 117

Query: 368  GTGLDLDVQVITALIRMYSSCGCVTDARKLFDRTNSRDVVLWNAMVAGYAKVGDIDNARD 547
             TGLD  V V+TALI MYSSCG V DAR+LFD    RDV LWNAM+AGYAK+G +D+AR 
Sbjct: 118  VTGLDTHVSVVTALIHMYSSCGSVFDARRLFDGAAFRDVALWNAMIAGYAKLGHVDSARH 177

Query: 548  LFELMP--ERNVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLAALSACADL 721
            +FE MP    NVISWTA+IAGYAQ N+P++AI VF+RM L +V+PDEIAMLAALSACA L
Sbjct: 178  VFETMPLNNSNVISWTALIAGYAQVNRPTEAIMVFRRMQLHNVQPDEIAMLAALSACAQL 237

Query: 722  GALDLGQWIHNYIDKHGFFGIVPLKNALIDMYAKSGNIKKALEVFESMKHRSVITWTTII 901
            GAL LG+WIHNYI KHGF  +  L NALIDMYAKSGNI+KAL+VF S  H++VITWTT+I
Sbjct: 238  GALRLGEWIHNYIQKHGFRELSSLNNALIDMYAKSGNIRKALQVFHSTNHKTVITWTTMI 297

Query: 902  XXXXXXXXXXXXXXMFSRMDRARIKPNEITFIAILHACSHVGLVDMGWWYFNNMGSRFGM 1081
                          MFS+M+RA+I PN ITFIAIL ACSH  LV  G  YF+ M SR+ +
Sbjct: 298  AGLALHGLGTQALDMFSQMERAQIAPNHITFIAILSACSHAHLVQTGLRYFDIMVSRYRI 357

Query: 1082 EPNIEHYG 1105
            +P I HYG
Sbjct: 358  QPKIMHYG 365


>ref|XP_007014654.1| Pentatricopeptide repeat (PPR) superfamily protein, putative isoform
            1 [Theobroma cacao] gi|590582550|ref|XP_007014655.1|
            Pentatricopeptide repeat (PPR) superfamily protein,
            putative isoform 1 [Theobroma cacao]
            gi|508785017|gb|EOY32273.1| Pentatricopeptide repeat
            (PPR) superfamily protein, putative isoform 1 [Theobroma
            cacao] gi|508785018|gb|EOY32274.1| Pentatricopeptide
            repeat (PPR) superfamily protein, putative isoform 1
            [Theobroma cacao]
          Length = 540

 Score =  421 bits (1083), Expect = e-115
 Identities = 211/379 (55%), Positives = 276/379 (72%), Gaps = 13/379 (3%)
 Frame = +2

Query: 8    LLNRCCNLKHICQTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKIQPDVYL 187
            LL RC NLKH+ Q HGFMV    D D  L+S+FIE C +LGF  Y YSVF   +QP +Y+
Sbjct: 9    LLKRCSNLKHVEQAHGFMVRTALDHDEILLSQFIEACSSLGFPGYAYSVFAFNLQPRIYV 68

Query: 188  YNTVIKALSQTDSSKQAILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQSI 367
            +NT+IKAL+ + S+ +A+ +Y  I  A  RPD+YS PFALKAVV L  ++ G +IH Q++
Sbjct: 69   FNTMIKALTLSHSAFEALHVYKSIARAKLRPDSYSFPFALKAVVDLQALRFGTQIHSQTV 128

Query: 368  GTGLDLDVQVITALIRMYSSCGCVTDARKLFDRTNS-----RDVVLWNAMVAGYAKVGDI 532
              GL+ ++ V TALI+MYSSC CV+DARKLFD+  S     +DV LW+A +AGYAKVGD 
Sbjct: 129  CAGLNANIYVATALIQMYSSCACVSDARKLFDQLTSVSRSIQDVALWSATIAGYAKVGDP 188

Query: 533  DNARDLFELMP------ERNVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAML 694
            D A DL E MP      E  ++ WT +IAGYAQ ++P++AI VF+RM LE+V+PDEIAML
Sbjct: 189  DAAWDLLERMPQTQTNAEAVMVCWTTVIAGYAQMDRPNEAIAVFRRMQLENVKPDEIAML 248

Query: 695  AALSACADLGALD--LGQWIHNYIDKHGFFGIVPLKNALIDMYAKSGNIKKALEVFESMK 868
            A L+ACA LGA+   LG+ IH YI KHGF  ++PLKNALI+MYAKSG+I KAL+VFE+M 
Sbjct: 249  AVLTACAHLGAIQFLLGECIHGYIHKHGFNQMIPLKNALIEMYAKSGDICKALQVFENMN 308

Query: 869  HRSVITWTTIIXXXXXXXXXXXXXXMFSRMDRARIKPNEITFIAILHACSHVGLVDMGWW 1048
            H++VITWTTII              MFSRM+RA+++PN+ITF+A+L AC+H GLVD+G  
Sbjct: 309  HKTVITWTTIISALAFHGLGTLALQMFSRMERAQVQPNDITFLAVLSACTHAGLVDLGGC 368

Query: 1049 YFNNMGSRFGMEPNIEHYG 1105
            +FN M SR+G++P I+HYG
Sbjct: 369  FFNTMSSRYGIQPKIQHYG 387



 Score = 87.8 bits (216), Expect = 7e-15
 Identities = 66/244 (27%), Positives = 110/244 (45%), Gaps = 6/244 (2%)
 Frame = +2

Query: 188 YNTVIKALSQTDSSKQAILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVK--VGREIHCQ 361
           + TVI   +Q D   +AI ++ ++Q+   +PD  ++   L A   L  ++  +G  IH  
Sbjct: 212 WTTVIAGYAQMDRPNEAIAVFRRMQLENVKPDEIAMLAVLTACAHLGAIQFLLGECIHGY 271

Query: 362 SIGTGLDLDVQVITALIRMYSSCGCVTDARKLFDRTNSRDVVLWNAMVAGYAKVGDIDNA 541
               G +  + +  ALI MY                               AK GDI  A
Sbjct: 272 IHKHGFNQMIPLKNALIEMY-------------------------------AKSGDICKA 300

Query: 542 RDLFELMPERNVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLAALSACADL 721
             +FE M  + VI+WT +I+  A     + A+ +F RM    V+P++I  LA LSAC   
Sbjct: 301 LQVFENMNHKTVITWTTIISALAFHGLGTLALQMFSRMERAQVQPNDITFLAVLSACTHA 360

Query: 722 GALDLGQWIHNYIDKHGFFGIVPL---KNALIDMYAKSGNIKKALEVFESMKHR-SVITW 889
           G +DLG    N +     +GI P       +ID+  ++G +++ALE+   M  + +   W
Sbjct: 361 GLVDLGGCFFNTMSSR--YGIQPKIQHYGCMIDLLGRAGYLREALELVSRMPFKPNAAIW 418

Query: 890 TTII 901
            +++
Sbjct: 419 GSLL 422


>ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223537334|gb|EEF38963.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 538

 Score =  415 bits (1066), Expect = e-113
 Identities = 209/369 (56%), Positives = 268/369 (72%), Gaps = 3/369 (0%)
 Frame = +2

Query: 8    LLNRCCNLKHICQTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKIQP-DVY 184
            LLN C NLKH+ QTH FM+ R  D DN L+S FI+   +LGFS Y YS+FT    P +++
Sbjct: 17   LLNHCSNLKHLHQTHAFMLCRALDHDNLLLSLFIQSSSSLGFSLYAYSLFTSLTHPPNIF 76

Query: 185  LYNTVIKALSQTDSSKQAILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQS 364
            LYNT+I+ALS +     +I L+N+IQ A  RPD+YS PFALKAV+RLS  K G + H Q+
Sbjct: 77   LYNTIIRALSLSPQPSLSIFLFNRIQSARLRPDSYSFPFALKAVIRLSATKTGLQFHSQA 136

Query: 365  IGTGLDLDVQVITALIRMYSSCGCVTDARKLFDRT--NSRDVVLWNAMVAGYAKVGDIDN 538
            I  GL   + V+ +LIRMYSS   ++DARKLFD     +R+V LWNAM+  YAK+ D+ N
Sbjct: 137  IRFGLHSHLHVLVSLIRMYSSSH-ISDARKLFDGIPLTARNVALWNAMLTSYAKICDMPN 195

Query: 539  ARDLFELMPERNVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLAALSACAD 718
            A+ LF+ MP+RN+ISWTA+I+GYA  N+P +AI +F+ M L++V PDEI +LA LSACA 
Sbjct: 196  AQHLFDSMPQRNLISWTALISGYAHINRPHQAIAIFRTMQLQNVVPDEITLLAVLSACAQ 255

Query: 719  LGALDLGQWIHNYIDKHGFFGIVPLKNALIDMYAKSGNIKKALEVFESMKHRSVITWTTI 898
            LGAL+LG+WI NYID HG    VPL NALIDMYAKSGNIK+AL +FESMKH++++TWTT+
Sbjct: 256  LGALELGEWIRNYIDIHGLHRNVPLHNALIDMYAKSGNIKRALLIFESMKHKTIVTWTTM 315

Query: 899  IXXXXXXXXXXXXXXMFSRMDRARIKPNEITFIAILHACSHVGLVDMGWWYFNNMGSRFG 1078
            I              MFSRM+R R+KPNEITFIA+L ACSHVGLV +   +F NM SR+ 
Sbjct: 316  IAGLALHGLGTQALEMFSRMERDRVKPNEITFIAVLSACSHVGLVQLARSFFTNMRSRYT 375

Query: 1079 MEPNIEHYG 1105
            ++P IEHYG
Sbjct: 376  IQPKIEHYG 384


>ref|XP_003556973.2| PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like
            [Glycine max]
          Length = 580

 Score =  411 bits (1056), Expect = e-112
 Identities = 204/370 (55%), Positives = 274/370 (74%), Gaps = 4/370 (1%)
 Frame = +2

Query: 8    LLNRCCNLKHICQTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKIQPDVYL 187
            LL  C NL H+ QT GFM+ RG DQD+ L+++FI    +LG S Y YSVF    +P ++ 
Sbjct: 67   LLCHCTNLSHLQQTQGFMLTRGLDQDDILLARFIYTSASLGLSSYAYSVFISNHRPSIFF 126

Query: 188  YNTVIKALSQTDSSKQAILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQSI 367
            YN VI ALS ++ ++ AI L+N I++ G  PD+YS PF LKAVV LS V VG++IHCQ+I
Sbjct: 127  YNNVIWALSSSNPTR-AISLFNAIRLLGMPPDSYSFPFVLKAVVCLSAVHVGKQIHCQAI 185

Query: 368  GTGLDLDVQVITALIRMYSSCGCVTDARKLFDRTNSRDVVLWNAMVAGYAKVGDIDNARD 547
             +GLD    V+T+L++MYSSC  ++ ARKLFD    +   LWNAM+AGYAKVG++ NAR+
Sbjct: 186  VSGLDSHPSVVTSLVQMYSSCAHLSSARKLFDGATFKHAPLWNAMLAGYAKVGNMSNARN 245

Query: 548  LFELMPE--RNVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLAALSACADL 721
            LFE MPE  R+V+SWT +I+GY QT+ P++AIT+F+ M L++V+PDEIA+LA LSACADL
Sbjct: 246  LFECMPEKDRDVVSWTTLISGYTQTHSPNEAITLFRIMLLQNVQPDEIAILAVLSACADL 305

Query: 722  GALDLGQWIHNYIDKHG--FFGIVPLKNALIDMYAKSGNIKKALEVFESMKHRSVITWTT 895
            GAL LG+WIHNYI+KH       VPL N+LIDMYAKSG+I KA ++F++MKH+++ITWTT
Sbjct: 306  GALQLGEWIHNYIEKHNNKLRKTVPLCNSLIDMYAKSGDISKARQLFQNMKHKTIITWTT 365

Query: 896  IIXXXXXXXXXXXXXXMFSRMDRARIKPNEITFIAILHACSHVGLVDMGWWYFNNMGSRF 1075
            +I              +FS M++AR+KPNE+T IA+L ACSHVGLV++G   F +M S++
Sbjct: 366  VISGLALHGFGKEALDVFSCMEKARVKPNEVTLIAVLSACSHVGLVELGRNIFTSMRSKY 425

Query: 1076 GMEPNIEHYG 1105
            G+EP IEHYG
Sbjct: 426  GIEPKIEHYG 435


>ref|XP_007153011.1| hypothetical protein PHAVU_003G000200g [Phaseolus vulgaris]
            gi|561026365|gb|ESW25005.1| hypothetical protein
            PHAVU_003G000200g [Phaseolus vulgaris]
          Length = 555

 Score =  397 bits (1019), Expect = e-108
 Identities = 200/368 (54%), Positives = 266/368 (72%), Gaps = 2/368 (0%)
 Frame = +2

Query: 8    LLNRCCNLKHICQTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKIQPDVYL 187
            LL RC NL H+ QT  FM+ R  D+D+ L+++FI    +LGF  + YS+F H  +P +YL
Sbjct: 42   LLRRCSNLSHLQQTQCFMLTRALDKDDILLARFIYASASLGFPSFAYSIFIHNHRPSIYL 101

Query: 188  YNTVIKALSQTDSSKQAILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQSI 367
            YN +I ALS  + ++ AI L+N I++ G RPD+YS PFALKAVV  S + VG +IH Q+I
Sbjct: 102  YNNLIWALSSHNPTR-AISLFNAIRLLGLRPDSYSFPFALKAVVSSSFLHVGHQIHSQAI 160

Query: 368  GTGLDLDVQVITALIRMYSSCGCVTDARKLFDRTNSRDVVLWNAMVAGYAKVGDIDNARD 547
             +G      V+T+LI MYSSC  V+ ARKLFD    + V LWNAM+AGYAKVGD+ NAR+
Sbjct: 161  LSGFITHPNVLTSLIHMYSSCANVSSARKLFDAATFQHVSLWNAMLAGYAKVGDLSNARN 220

Query: 548  LFELMPE--RNVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLAALSACADL 721
            LFE MPE  R+V+SWT +I+GY +T+ P +AIT+F+ M + +V+PD+IA+LAALSACADL
Sbjct: 221  LFETMPEKDRDVVSWTCLISGYTRTHCPHQAITLFRTMLVHNVQPDKIAILAALSACADL 280

Query: 722  GALDLGQWIHNYIDKHGFFGIVPLKNALIDMYAKSGNIKKALEVFESMKHRSVITWTTII 901
            GAL+LG WIH+YI++H    IV L N+LIDMYAKSG+I KA +VFE M+ ++++TWTT+I
Sbjct: 281  GALELGVWIHSYIERHKLPEIVSLCNSLIDMYAKSGDIGKARQVFEGMERKTIVTWTTMI 340

Query: 902  XXXXXXXXXXXXXXMFSRMDRARIKPNEITFIAILHACSHVGLVDMGWWYFNNMGSRFGM 1081
                          +FS M++A +KPNE+TFI IL ACSHVGLV++G  YF  M  RFG+
Sbjct: 341  GGLALHGMGKEALELFSCMEKAGVKPNEVTFITILSACSHVGLVELGRHYFTCMRKRFGI 400

Query: 1082 EPNIEHYG 1105
            EP IEHYG
Sbjct: 401  EPKIEHYG 408


>ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297310281|gb|EFH40705.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 531

 Score =  385 bits (988), Expect = e-104
 Identities = 196/365 (53%), Positives = 257/365 (70%), Gaps = 5/365 (1%)
 Frame = +2

Query: 26   NLKHICQTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKIQPDVYLYNTVIK 205
            NLK + Q+H FM+  G ++DN  V+KFIE C   G   Y YSVFTH+  P+ YL+NT+I+
Sbjct: 27   NLKTLKQSHCFMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPFPNTYLHNTMIR 86

Query: 206  ALSQTDSSKQ---AILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQSIGTG 376
            ALS  D       AI +Y K      +PDT++ PF LK VVR+S V  GR++H Q++  G
Sbjct: 87   ALSLVDERNAHSIAITVYRKFWAFCAKPDTFTFPFVLKIVVRVSDVWFGRQVHGQAVVFG 146

Query: 377  LDLDVQVITALIRMYSSCGCVTDARKLFDRTNSRDVVLWNAMVAGYAKVGDIDNARDLFE 556
             D  V V+T LI+MYSSCG + DARK+FD    RDV +WNA++AGY KVG++D AR L E
Sbjct: 147  FDSSVHVVTGLIQMYSSCGGLGDARKVFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLE 206

Query: 557  LMP--ERNVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLAALSACADLGAL 730
            +MP   RN +SWT +I+GYA++ + S+AI VFQRM +E+V+PDE+ +LA LSACADLG+L
Sbjct: 207  MMPCWVRNAVSWTCVISGYARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSL 266

Query: 731  DLGQWIHNYIDKHGFFGIVPLKNALIDMYAKSGNIKKALEVFESMKHRSVITWTTIIXXX 910
            +LG+ I +Y+D  G    V L NA+IDMYAKSGNI KALEVFES+  R+V+TWTTII   
Sbjct: 267  ELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGL 326

Query: 911  XXXXXXXXXXXMFSRMDRARIKPNEITFIAILHACSHVGLVDMGWWYFNNMGSRFGMEPN 1090
                       MF RM +A +KPN++TFIAIL ACSHVG VD+G  +FN+M S++G+ PN
Sbjct: 327  ATHGHGAEALVMFDRMVKAGVKPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKYGINPN 386

Query: 1091 IEHYG 1105
            IEHYG
Sbjct: 387  IEHYG 391



 Score =  103 bits (256), Expect = 2e-19
 Identities = 75/283 (26%), Positives = 134/283 (47%), Gaps = 5/283 (1%)
 Frame = +2

Query: 44  QTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKIQPDVYLYNTVIKALSQTD 223
           Q HG  V  GFD    +V+  I++  + G       VF      DV ++N ++    +  
Sbjct: 137 QVHGQAVVFGFDSSVHVVTGLIQMYSSCGGLGDARKVFDEMRVRDVNVWNALLAGYGKVG 196

Query: 224 SSKQAILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQSIGTGLDLDVQVIT 403
              +A  L   +    +  +  S    +    R  R     E+  + +   +D D   + 
Sbjct: 197 EMDEARGLLEMMPC--WVRNAVSWTCVISGYARSGRASEAIEVFQRMLMENVDPDEVTLL 254

Query: 404 ALIRMYSSCGCVTDARKLFD----RTNSRDVVLWNAMVAGYAKVGDIDNARDLFELMPER 571
           A++   +  G +    ++      R  +R V L NA++  YAK G+I  A ++FE + ER
Sbjct: 255 AVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALEVFESVNER 314

Query: 572 NVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLAALSACADLGALDLGQWIH 751
           NV++WT +I G A     ++A+ +F RM    V+P+++  +A LSAC+ +G +DLG    
Sbjct: 315 NVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPNDVTFIAILSACSHVGWVDLGNRFF 374

Query: 752 NYI-DKHGFFGIVPLKNALIDMYAKSGNIKKALEVFESMKHRS 877
           N +  K+G    +     +ID+  ++G +++A EV +SM   S
Sbjct: 375 NSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIKSMPFES 417


>ref|XP_006280289.1| hypothetical protein CARUB_v10026213mg [Capsella rubella]
            gi|482548993|gb|EOA13187.1| hypothetical protein
            CARUB_v10026213mg [Capsella rubella]
          Length = 532

 Score =  379 bits (972), Expect = e-102
 Identities = 194/364 (53%), Positives = 260/364 (71%), Gaps = 5/364 (1%)
 Frame = +2

Query: 29   LKHICQTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKIQPDVYLYNTVIKA 208
            LK + Q+H  M+  G ++DN +V+KFIE C   G   Y YSVFTH+  P+ YL+NT+I+A
Sbjct: 29   LKTLKQSHCLMLVTGLNRDNLIVAKFIEACSNAGHVRYAYSVFTHQPFPNTYLHNTMIRA 88

Query: 209  LSQTD---SSKQAILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQSIGTGL 379
            LS  D   ++  A+ +Y K      +PDT++ PF LK  VR+S V  GR+IH Q++  GL
Sbjct: 89   LSLVDEPNANSFAVSVYRKFWALCCKPDTFTFPFVLKIAVRVSDVCFGRQIHGQTVVFGL 148

Query: 380  DLDVQVITALIRMYSSCGCVTDARKLFDRTNSRDVVLWNAMVAGYAKVGDIDNARDLFEL 559
            D  V V+T +I+MYSSCG + DARK+FD T  RDV +WNA++AGY KVG++D AR L ++
Sbjct: 149  DSSVHVVTGIIQMYSSCGGLGDARKVFDETRVRDVNVWNALLAGYGKVGEMDEARVLLDM 208

Query: 560  MP--ERNVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLAALSACADLGALD 733
            MP   RNV+SWT +I+GYA++ +PS+AI VFQRM +E+VEPDE+ +LAALSACADL +L+
Sbjct: 209  MPCWIRNVVSWTCVISGYAKSRRPSEAIEVFQRMLMENVEPDEVTLLAALSACADLVSLE 268

Query: 734  LGQWIHNYIDKHGFFGIVPLKNALIDMYAKSGNIKKALEVFESMKHRSVITWTTIIXXXX 913
            LG+ I +Y+D  G    V L NA+IDMYAKSGNI KALEVFE +  R+V+TWTTII    
Sbjct: 269  LGERICSYVDHRGMERAVSLNNAVIDMYAKSGNITKALEVFERVNERNVVTWTTIITGLA 328

Query: 914  XXXXXXXXXXMFSRMDRARIKPNEITFIAILHACSHVGLVDMGWWYFNNMGSRFGMEPNI 1093
                      MF+RM +A +KPN++TFIAIL ACSHVG V +G   F++M S++GM+PNI
Sbjct: 329  THGHGTEALAMFNRMVKAGVKPNDVTFIAILSACSHVGWVYLGKRLFSSMISKYGMQPNI 388

Query: 1094 EHYG 1105
            EHYG
Sbjct: 389  EHYG 392



 Score = 88.2 bits (217), Expect = 6e-15
 Identities = 68/279 (24%), Positives = 131/279 (46%), Gaps = 5/279 (1%)
 Frame = +2

Query: 44  QTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKIQPDVYLYNTVIKALSQTD 223
           Q HG  V  G D    +V+  I++  + G       VF      DV ++N ++    +  
Sbjct: 138 QIHGQTVVFGLDSSVHVVTGIIQMYSSCGGLGDARKVFDETRVRDVNVWNALLAGYGKVG 197

Query: 224 SSKQAILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQSIGTGLDLDVQVIT 403
              +A +L + +    +  +  S    +    +  R     E+  + +   ++ D   + 
Sbjct: 198 EMDEARVLLDMMPC--WIRNVVSWTCVISGYAKSRRPSEAIEVFQRMLMENVEPDEVTLL 255

Query: 404 ALIRMYSSCGCVTDARKLFD----RTNSRDVVLWNAMVAGYAKVGDIDNARDLFELMPER 571
           A +   +    +    ++      R   R V L NA++  YAK G+I  A ++FE + ER
Sbjct: 256 AALSACADLVSLELGERICSYVDHRGMERAVSLNNAVIDMYAKSGNITKALEVFERVNER 315

Query: 572 NVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLAALSACADLGALDLGQWIH 751
           NV++WT +I G A     ++A+ +F RM    V+P+++  +A LSAC+ +G + LG+ + 
Sbjct: 316 NVVTWTTIITGLATHGHGTEALAMFNRMVKAGVKPNDVTFIAILSACSHVGWVYLGKRLF 375

Query: 752 N-YIDKHGFFGIVPLKNALIDMYAKSGNIKKALEVFESM 865
           +  I K+G    +     +ID+  ++G +++A E  +SM
Sbjct: 376 SSMISKYGMQPNIEHYGCMIDLLGRAGLLREAEEAIKSM 414


>ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At5g56310 gi|10177829|dbj|BAB11258.1| unnamed protein
            product [Arabidopsis thaliana]
            gi|332009364|gb|AED96747.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 530

 Score =  374 bits (959), Expect = e-101
 Identities = 191/365 (52%), Positives = 254/365 (69%), Gaps = 5/365 (1%)
 Frame = +2

Query: 26   NLKHICQTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKIQPDVYLYNTVIK 205
            NLK + Q+H +M+  G ++DN  V+KFIE C   G   Y YSVFTH+  P+ YL+NT+I+
Sbjct: 27   NLKTLKQSHCYMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIR 86

Query: 206  ALSQTDSSKQ---AILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQSIGTG 376
            ALS  D       AI +Y K+     +PDT++ PF LK  VR+S V  GR+IH Q +  G
Sbjct: 87   ALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFG 146

Query: 377  LDLDVQVITALIRMYSSCGCVTDARKLFDRTNSRDVVLWNAMVAGYAKVGDIDNARDLFE 556
             D  V V+T LI+MY SCG + DARK+FD    +DV +WNA++AGY KVG++D AR L E
Sbjct: 147  FDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLE 206

Query: 557  LMP--ERNVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLAALSACADLGAL 730
            +MP   RN +SWT +I+GYA++ + S+AI VFQRM +E+VEPDE+ +LA LSACADLG+L
Sbjct: 207  MMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSL 266

Query: 731  DLGQWIHNYIDKHGFFGIVPLKNALIDMYAKSGNIKKALEVFESMKHRSVITWTTIIXXX 910
            +LG+ I +Y+D  G    V L NA+IDMYAKSGNI KAL+VFE +  R+V+TWTTII   
Sbjct: 267  ELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGL 326

Query: 911  XXXXXXXXXXXMFSRMDRARIKPNEITFIAILHACSHVGLVDMGWWYFNNMGSRFGMEPN 1090
                       MF+RM +A ++PN++TFIAIL ACSHVG VD+G   FN+M S++G+ PN
Sbjct: 327  ATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPN 386

Query: 1091 IEHYG 1105
            IEHYG
Sbjct: 387  IEHYG 391



 Score =  109 bits (273), Expect = 2e-21
 Identities = 74/283 (26%), Positives = 140/283 (49%), Gaps = 5/283 (1%)
 Frame = +2

Query: 44  QTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKIQPDVYLYNTVIKALSQTD 223
           Q HG +V  GFD    +V+  I++ F+ G       +F   +  DV ++N ++    +  
Sbjct: 137 QIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVG 196

Query: 224 SSKQAILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQSIGTGLDLDVQVIT 403
              +A  L   +    +  +  S    +    +  R     E+  + +   ++ D   + 
Sbjct: 197 EMDEARSLLEMMPC--WVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLL 254

Query: 404 ALIRMYSSCGCVTDARKLFD----RTNSRDVVLWNAMVAGYAKVGDIDNARDLFELMPER 571
           A++   +  G +    ++      R  +R V L NA++  YAK G+I  A D+FE + ER
Sbjct: 255 AVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNER 314

Query: 572 NVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLAALSACADLGALDLGQWIH 751
           NV++WT +IAG A     ++A+ +F RM    V P+++  +A LSAC+ +G +DLG+ + 
Sbjct: 315 NVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLF 374

Query: 752 NYI-DKHGFFGIVPLKNALIDMYAKSGNIKKALEVFESMKHRS 877
           N +  K+G    +     +ID+  ++G +++A EV +SM  ++
Sbjct: 375 NSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKA 417


>ref|XP_006344590.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like
            isoform X1 [Solanum tuberosum]
            gi|565355429|ref|XP_006344591.1| PREDICTED:
            pentatricopeptide repeat-containing protein
            At5g56310-like isoform X2 [Solanum tuberosum]
          Length = 508

 Score =  367 bits (943), Expect = 4e-99
 Identities = 188/352 (53%), Positives = 241/352 (68%), Gaps = 3/352 (0%)
 Frame = +2

Query: 59   MVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKIQPDVYLYNTVIKALS-QTDSSKQ 235
            MV R  D+DN ++S+F   C A+GF  Y YS+FT    P++YLYNT+I   S Q   SK 
Sbjct: 1    MVHRALDEDNFILSQFFHTCSAVGFVSYAYSIFTSNPNPNIYLYNTLISIFSRQQHLSKD 60

Query: 236  AILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQSIGTGLDLDVQVITALIR 415
            AI LY + +  G   DTYSIPF L A  RL      R+IHC++I TGL+ DV V T+L+R
Sbjct: 61   AICLYKQARAIGLYHDTYSIPFVLNAETRLI---TSRQIHCEAILTGLNNDVHVATSLVR 117

Query: 416  MYSSCGCVTDARKLFDRTNSRDVVLWNAMVAGYAKVGDIDNARDLFELMPERNVISWTAM 595
            MYSS GC++DARK+FD   ++DV  WNAM+ GY K  D+D A+ LF+ M E+NV+SWTA+
Sbjct: 118  MYSSFGCISDARKVFDEMRNKDVGWWNAMIVGYVKAHDMDTAKCLFDNMLEKNVVSWTAI 177

Query: 596  IAGYAQTNQPSKAITVFQRMHLEDV--EPDEIAMLAALSACADLGALDLGQWIHNYIDKH 769
            IAGYAQ NQ S+AI VF++M   +V  +PDE+ MLAALSACA LG  +LG+WIH+YI KH
Sbjct: 178  IAGYAQGNQFSQAIGVFRKMMSVEVSAKPDEVTMLAALSACAHLGEHELGEWIHSYIIKH 237

Query: 770  GFFGIVPLKNALIDMYAKSGNIKKALEVFESMKHRSVITWTTIIXXXXXXXXXXXXXXMF 949
                 V L N LIDMYAKSGN+KKA+E+FESM+ RSV+TW+T+I              MF
Sbjct: 238  RLRRTVSLNNTLIDMYAKSGNVKKAVELFESMETRSVVTWSTVISALAVNGYGREAINMF 297

Query: 950  SRMDRARIKPNEITFIAILHACSHVGLVDMGWWYFNNMGSRFGMEPNIEHYG 1105
            SRM+   I+PN +TFIA+L ACSH GLV+ G  YF  M  + G+ P+I HYG
Sbjct: 298  SRMEMVGIRPNSVTFIALLSACSHAGLVEEGRLYFKTMEEKHGISPDIRHYG 349


>ref|XP_003589826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355478874|gb|AES60077.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 526

 Score =  365 bits (938), Expect = 1e-98
 Identities = 191/371 (51%), Positives = 261/371 (70%), Gaps = 5/371 (1%)
 Frame = +2

Query: 8    LLNRCCNLKHICQTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFT--HKIQPDV 181
            LL++C  L H+ QTH F++     Q++  +S+FI    +L +  Y YS+FT  H     +
Sbjct: 19   LLSQCTTLTHLQQTHTFILKHALFQNDINLSRFIHKTASLNYPSYSYSIFTFNHNRPFPI 78

Query: 182  YLYNTVIKALSQTDSSKQAILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQ 361
            ++YN +I AL  + ++K A+ ++  ++  G   D+YS+P+ LK+VV L+   +G++IHC 
Sbjct: 79   FVYNNIIYAL-YSSNAKLAVSIFRSVRRLGLSFDSYSLPYVLKSVVCLNDFGLGKQIHCV 137

Query: 362  SIGTGLDLDVQVITALIRMYSSCGCVTDARKLFDRTNSRDVVLWNAMVAGYAKVGDIDNA 541
             + TGLD +V V ++LI+MYS C  V  ARKLFD       VL NAM+  Y KVGD+ NA
Sbjct: 138  GVVTGLDKNVSVCSSLIQMYS-CYDVCSARKLFDEFGGNGCVL-NAMIVAYVKVGDVSNA 195

Query: 542  RDLFELMPERN--VISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLAALSACA 715
            R LF+ M ER+  V SWTAMI+GY Q + P++AI +F+RM LE+V+PDEIA+LA LSACA
Sbjct: 196  RKLFDSMLERDKDVFSWTAMISGYTQAHNPNEAIKLFRRMQLENVKPDEIAILAVLSACA 255

Query: 716  DLGALDLGQWIHNYIDKHGFFGIVPLKNALIDMYAKSGNIKKALEVFESMKHRSVITWTT 895
            DLGAL LG+WIHNYI+KH    IVPL N+LIDMYAKSGNI+KALE+FE+MKH+++ITWTT
Sbjct: 256  DLGALHLGEWIHNYIEKHKLSKIVPLYNSLIDMYAKSGNIRKALELFENMKHKTIITWTT 315

Query: 896  IIXXXXXXXXXXXXXXMFSRMDRA-RIKPNEITFIAILHACSHVGLVDMGWWYFNNMGSR 1072
            +I              +FS M++  R+KPNE+TFIAIL ACSHVGLV++G  YF +M SR
Sbjct: 316  MIAGLALHGLGKEALRVFSCMEKEDRVKPNEVTFIAILSACSHVGLVELGRDYFTSMRSR 375

Query: 1073 FGMEPNIEHYG 1105
            +G+EP IEHYG
Sbjct: 376  YGIEPKIEHYG 386


>ref|XP_004498089.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like
            [Cicer arietinum]
          Length = 546

 Score =  365 bits (937), Expect = 2e-98
 Identities = 185/377 (49%), Positives = 262/377 (69%), Gaps = 11/377 (2%)
 Frame = +2

Query: 8    LLNRCCNLKHICQTHGFMVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFT---HKIQPD 178
            LL+ C NL H+ QTH FM+     Q++  +S+FI    +L F +Y +S+FT   H     
Sbjct: 31   LLSHCTNLTHLQQTHSFMLKTSLFQNDIHLSRFIHKSASLNFPNYSFSIFTSLNHNRPFP 90

Query: 179  VYLYNTVIKALSQTDSSKQAILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHC 358
            +++YN +I A S ++ ++ A+ L+N ++  G   D+YS+P+ LKAV  L+ + +G+++HC
Sbjct: 91   IFVYNNIIYAFSSSNPTR-AVSLFNVVRRLGLSLDSYSLPYVLKAVGSLNDIVLGKQVHC 149

Query: 359  QSIGTGLDLDVQVITALIRMYSSCGC-VTDARKLFDRT----NSRDVVLWNAMVAGYAKV 523
              + TGLD  V V+ ++++MY  CG  V  ARK+FD            +WNAM+ GYAKV
Sbjct: 150  IGVVTGLDCYVSVVASIVQMYCCCGNDVWSARKVFDDGLVLFGGDGGAVWNAMIVGYAKV 209

Query: 524  GDIDNARDLFELMPE--RNVISWTAMIAGYAQTNQPSKAITVFQRMHLEDVEPDEIAMLA 697
            GD+ NA+ LF+ MP+  +NV SWTA+I+GY Q + P++AI +F+RM LE+V+PDEIA+LA
Sbjct: 210  GDVFNAQKLFDKMPQMDKNVFSWTALISGYTQAHNPNEAIKLFRRMQLENVKPDEIAILA 269

Query: 698  ALSACADLGALDLGQWIHNYIDKHGFFGIVPLKNALIDMYAKSGNIKKALEVFESMKHRS 877
             LSACADLGAL LG+WIHNYI+KH    IVPL N+LIDMYAKSGNI KAL++FE+M H++
Sbjct: 270  VLSACADLGALHLGEWIHNYIEKHKLNKIVPLYNSLIDMYAKSGNISKALKLFENMNHKT 329

Query: 878  VITWTTIIXXXXXXXXXXXXXXMFSRMDR-ARIKPNEITFIAILHACSHVGLVDMGWWYF 1054
            +ITWTT+I              +FSRM++  R+KPNE+TFIA+L ACSHV LV+ G  YF
Sbjct: 330  IITWTTMIAGLALHGLGKEALHVFSRMEKEGRVKPNEVTFIAVLCACSHVRLVEQGLNYF 389

Query: 1055 NNMGSRFGMEPNIEHYG 1105
             +M SR+G+EP +EHYG
Sbjct: 390  TSMRSRYGIEPKVEHYG 406


>ref|XP_006358733.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like
            isoform X1 [Solanum tuberosum]
            gi|565385767|ref|XP_006358734.1| PREDICTED:
            pentatricopeptide repeat-containing protein
            At5g56310-like isoform X2 [Solanum tuberosum]
          Length = 508

 Score =  365 bits (936), Expect = 2e-98
 Identities = 187/352 (53%), Positives = 240/352 (68%), Gaps = 3/352 (0%)
 Frame = +2

Query: 59   MVPRGFDQDNTLVSKFIEVCFALGFSDYGYSVFTHKIQPDVYLYNTVIKALS-QTDSSKQ 235
            MV R  DQDN ++S+F   C ALGF  Y YS+ T    P++YLYNT+I   S Q   S  
Sbjct: 1    MVHRALDQDNFILSQFFHTCSALGFVSYAYSIVTSNPNPNIYLYNTLISIFSRQRHLSMD 60

Query: 236  AILLYNKIQVAGFRPDTYSIPFALKAVVRLSRVKVGREIHCQSIGTGLDLDVQVITALIR 415
            AI LY + +  G   DTYSIPF L AV  L+     R+IHC++I TGL+ DV V T+L+R
Sbjct: 61   AICLYKQARAIGLYHDTYSIPFVLNAVTCLT---TSRQIHCEAILTGLNNDVHVATSLVR 117

Query: 416  MYSSCGCVTDARKLFDRTNSRDVVLWNAMVAGYAKVGDIDNARDLFELMPERNVISWTAM 595
            MYSS GC++DARK+FD   ++DV LWNAM+AGY K  D+D A+ LF+ M E+NV+SWT +
Sbjct: 118  MYSSFGCISDARKVFDEMRNKDVGLWNAMIAGYVKAHDMDTAKYLFDNMLEKNVVSWTTI 177

Query: 596  IAGYAQTNQPSKAITVFQRMHLEDV--EPDEIAMLAALSACADLGALDLGQWIHNYIDKH 769
            IAGYAQ NQ S+AI VF++M   +V  +PDE+ MLAALSACA LG  +LG+WIH+YI KH
Sbjct: 178  IAGYAQGNQFSQAIGVFRKMMSVEVSAKPDEVTMLAALSACAHLGEHELGEWIHSYIIKH 237

Query: 770  GFFGIVPLKNALIDMYAKSGNIKKALEVFESMKHRSVITWTTIIXXXXXXXXXXXXXXMF 949
                 V L N LIDMYAKSGN+KKA+E+FESM+ RSV+TW+T+I              MF
Sbjct: 238  RLHRSVSLNNTLIDMYAKSGNVKKAVELFESMETRSVVTWSTVISALAVNGYGREAINMF 297

Query: 950  SRMDRARIKPNEITFIAILHACSHVGLVDMGWWYFNNMGSRFGMEPNIEHYG 1105
             R++   I+PN +TFIA+L ACSH GLV+ G  YF  M  + G+ P+I HYG
Sbjct: 298  PRLEMVGIRPNSVTFIALLSACSHAGLVEEGRLYFKTMEEKHGISPDIRHYG 349