BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00014895
         (3474 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]              713   0.0  
emb|CCH50966.1| T4.5 [Malus x robusta]                                592   e-166
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]   570   e-159
emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera]   565   e-158
emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]   563   e-157
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   559   e-156
emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]   558   e-156
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   558   e-156
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc...   556   e-155
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc...   555   e-155
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   555   e-155
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   554   e-154
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   553   e-154
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]   551   e-153
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   551   e-153
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   548   e-153
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   548   e-153
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   547   e-152
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  545   e-152
gb|AAB82754.1| retrofit [Oryza longistaminata]                        543   e-151

>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score =  713 bits (1841), Expect = 0.0
 Identities = 356/540 (65%), Positives = 431/540 (79%)
 Frame = -3

Query: 1915 MVTRLQSGIRKPNSKFAMNIHLSTPPEQEPTSYTQASKSPEWRTAMGAEFDALIQAGTWT 1736
            +VTR + GI KPN K+AM+  L   P  EPT YTQA+K PEWR AM  EF AL QAGTW 
Sbjct: 846  IVTRSKHGISKPNPKYAMHSTLLALP-LEPTCYTQAAKYPEWREAMDHEFKALQQAGTWF 904

Query: 1735 LVPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDTFSPVVKHTTI 1556
            LVPP+S MNILPNKWVF+IK++SDGS+ERYKARLVANGFHQQEGLD+ +TFSPVVKH+TI
Sbjct: 905  LVPPSSLMNILPNKWVFRIKKRSDGSVERYKARLVANGFHQQEGLDYTETFSPVVKHSTI 964

Query: 1555 RVILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVCRLHRSLYGLR 1376
            R++LAL VS  W I+QLDVQN FLHG ++E++YM+Q  GFVDP +P HVC+L RSLYGL+
Sbjct: 965  RLVLALAVSHRWPIRQLDVQNVFLHGYLNEDIYMKQHVGFVDPKFPQHVCKLRRSLYGLK 1024

Query: 1375 QAPRAWHKRFSDYLEEVGFVMSQADHSLFIYRFGIIFIVLLIYVDDILVTGNDVVKIRAL 1196
            QAPRAW + FSDYLEE+GF+ S+AD+S+F +    I+I+LLIYVDDIL+TGN+   I  L
Sbjct: 1025 QAPRAWFRCFSDYLEELGFLESRADYSMFTFNNRGIYIILLIYVDDILITGNNSSHISHL 1084

Query: 1195 VDSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVDSKPLATPVAA 1016
            + +L+S F MKDLGSV+YFLGIE    G  + +TQ  Y ++LLK+T   DS+P  TPV +
Sbjct: 1085 IHNLNSLFSMKDLGSVHYFLGIETVYNGDHLHLTQHKYIVDLLKKTKLHDSRPYPTPVLS 1144

Query: 1015 G*KLSLFDGDPLSDPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHKSTTVHWMAVKRI 836
            G KLS++DG  L DP+EYRS+VGALQYLTL+RPD+ YAVNQVCQFMH  T VHW+AVKRI
Sbjct: 1145 GKKLSVYDGVKLEDPSEYRSIVGALQYLTLTRPDICYAVNQVCQFMHSPTNVHWVAVKRI 1204

Query: 835  LRYLKGSVQYGLVYQPGSNLIQAYSDADYAGNPDDRHSTGGYVVYFGLNPISWSAKKQRT 656
            LRYLK ++ +GLVYQPGS+ + AYSDADYAG+PDDRHSTGG+           S+KK +T
Sbjct: 1205 LRYLKYTLNHGLVYQPGSHKLVAYSDADYAGDPDDRHSTGGFC----------SSKKHKT 1254

Query: 655  VSRSSTEAEYRQLAYTAAELSCIRALFRDLGVGLPVPTLWCENISSIALASNPVFHARTK 476
            VSRSS EAEYRQLAYTAAELS +R+LFRDL V L  P +WC+NISSI+LASNPVFH+RTK
Sbjct: 1255 VSRSSAEAEYRQLAYTAAELSWLRSLFRDLNVFLSCPRIWCDNISSISLASNPVFHSRTK 1314

Query: 475  HLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGLSRQRFAGLRFKLMVRDSPISLRG 296
            H+EVDYHYVR+KV+R EL + Y++T DQ ADIF KGLS QRF  L  KL VR  P+SLRG
Sbjct: 1315 HIEVDYHYVRDKVVRQELAVSYVSTADQTADIFTKGLSTQRFQFLASKLPVRARPLSLRG 1374



 Score =  228 bits (581), Expect = 1e-56
 Identities = 116/227 (51%), Positives = 152/227 (66%), Gaps = 9/227 (3%)
 Frame = -3

Query: 3229 PWRDYDMCQALDYISSLV--------LSHCYSLVEIIGLDKLENCGFIDIKGCNNTTI-K 3077
            P +   +  +L Y+SS V        L H  S +    + K+ +   + + G +N +  +
Sbjct: 465  PSKTSKVSSSLAYVSSRVSAETWHSRLGHASSTI----VSKVLSNKAVPVLGSSNFSFCQ 520

Query: 3076 AFQSDGGGEYTKRAFQNFLVKHGIQFRSSCPHHPEQNGIAERKHRHIVDTGLTLLAHASM 2897
            +      GEY    FQ++L  +GI  R SCP HPEQNG+AERKHRHIVDTGLTLLAHA M
Sbjct: 521  SCPLGKSGEYKSHIFQSYLSTNGIFQRFSCPKHPEQNGLAERKHRHIVDTGLTLLAHAHM 580

Query: 2896 PLTYWVEAFSTAVYLINRLPTKVLHQQIPFTKLFHEKPKFDTLRTFGSAFFPCLRPYNAH 2717
            P TYWV++F+TAVY+INRLP++VL+   P+ +LFH  P++ +L+ FG A FP LRPYN+ 
Sbjct: 581  PSTYWVDSFNTAVYIINRLPSRVLNYASPYEQLFHRVPQYHSLKVFGCACFPYLRPYNSS 640

Query: 2716 KLHFRSKLCVFIGYSSNHMGYRCLDVPSGRVYLSRHVVFDKQQFPFS 2576
            KL  RSK CVF+GYS NH GYRC D  SGRVYLSRHV+FD+  FPF+
Sbjct: 641  KLQLRSKRCVFLGYSLNHQGYRCFDPSSGRVYLSRHVLFDESSFPFT 687


>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score =  592 bits (1525), Expect = e-166
 Identities = 309/551 (56%), Positives = 390/551 (70%), Gaps = 8/551 (1%)
 Frame = -3

Query: 1915 MVTRLQSGIRKPNSKFAMNIHLSTPPEQ------EPTSYTQASKSPEWRTAMGAEFDALI 1754
            M+TR ++GI KP    A    L +  +        P+++ QASKS  W  AM  EF AL 
Sbjct: 1114 MITRAKAGIHKPKVFTATKHQLPSTVDSLTALPPTPSTFLQASKSSHWMEAMQFEFQALQ 1173

Query: 1753 QAGTWTLVPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDTFSPV 1574
              GTW LVP  S+ NI+  KWVFK+K K DG+IERYKARLVA GFHQQEGLDF +TFSPV
Sbjct: 1174 STGTWELVPNHSTYNIVGCKWVFKVKHKPDGTIERYKARLVAKGFHQQEGLDFSETFSPV 1233

Query: 1573 VKHTTIRVILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVCRLHR 1394
             K TTIR++L++ VS  W I QLDV NAFLHG + E+VYM QP GFVDP+ P HVC+L +
Sbjct: 1234 AKPTTIRILLSIAVSYYWFIHQLDVSNAFLHGHLKEDVYMVQPPGFVDPSKPHHVCKLRK 1293

Query: 1393 SLYGLRQAPRAWHKRFSDYLEEVGFVMSQADHSLFIYR-FGIIFIVLLIYVDDILVTGND 1217
            SLYGL+QAPRAW++ F   +  +GF  S +D SLFI R   I FI  L+YVDDI++TG+ 
Sbjct: 1294 SLYGLKQAPRAWYEAFYTAILSLGFSSSHSDTSLFIKRDTSITFI--LVYVDDIIITGSS 1351

Query: 1216 VVKIRALVDSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVDSKP 1037
            V + ++++  L + F +KDLG +NYFLGIE++K   G+L+ Q  YAL+LLK+T  + +KP
Sbjct: 1352 VTECQSIISQLQTMFPVKDLGDINYFLGIEVHKSDQGLLLHQAKYALDLLKKTDMLGAKP 1411

Query: 1036 LATPVAAG*KLSLFDGDPLSDPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHKSTTVH 857
             ATPV+   KL    G  LSDPT YRS VGALQYLT +RPDL++AVNQVCQ+MH   T+H
Sbjct: 1412 CATPVSTS-KLD-HSGTLLSDPTSYRSTVGALQYLTWTRPDLAFAVNQVCQYMHSPQTIH 1469

Query: 856  WMAVKRILRYLKGSVQYGLVYQPGSNLIQAYSDADYAGNPDDRHSTGGYVVYFGLNPISW 677
              AVKRILRYLKG+V  GL +  GS  + A+SDAD+AG P DR ST GY V+ G N ISW
Sbjct: 1470 LQAVKRILRYLKGTVDLGLWFTKGSQCLTAWSDADWAGCPVDRRSTSGYCVFLGSNLISW 1529

Query: 676  SAKKQRTVSRSSTEAEYRQLAYTAAELSCIRALFRDLGVG-LPVPTLWCENISSIALASN 500
            SAKKQ TV+RSSTEAEYR LA TAAE++ +  +  D+    L  P ++C+N S IALA N
Sbjct: 1530 SAKKQATVARSSTEAEYRSLANTAAEITWVCKILHDISFPLLKTPVIYCDNKSVIALAFN 1589

Query: 499  PVFHARTKHLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGLSRQRFAGLRFKLMVR 320
            PVFHARTKH+E+DYHY+REKVL G + ++++A+  Q+ADIF K L+  RFA L  KL VR
Sbjct: 1590 PVFHARTKHVEIDYHYIREKVLLGHIGVQHVASLLQIADIFTKPLAADRFAALTSKLSVR 1649

Query: 319  DSPISLRGCVR 287
                SLRGCV+
Sbjct: 1650 SPSFSLRGCVK 1660



 Score =  188 bits (478), Expect = 1e-44
 Identities = 89/170 (52%), Positives = 119/170 (70%), Gaps = 2/170 (1%)
 Frame = -3

Query: 3082 IKAFQSDGGGEYTKRAFQNFLVKHGIQFRSSCPHHPEQNGIAERKHRHIVDTGLTLLAHA 2903
            +++ +SD GGE+  ++ Q+F  + GI  + SC H  EQNG AERKHRH+V+ G TLL+ +
Sbjct: 852  VQSIRSDSGGEFLNKSLQSFFNEQGITHQLSCLHTSEQNGCAERKHRHVVEMGRTLLSQS 911

Query: 2902 SMPLTYWVEAFSTAVYLINRLP--TKVLHQQIPFTKLFHEKPKFDTLRTFGSAFFPCLRP 2729
             +P  +WVEAF T VYLINRLP  + V+    P+  LFH  PK+ TL+ FG A +P L+P
Sbjct: 912  DLPTQFWVEAFQTVVYLINRLPPQSSVIS---PWELLFHASPKYHTLKAFGCACYPWLQP 968

Query: 2728 YNAHKLHFRSKLCVFIGYSSNHMGYRCLDVPSGRVYLSRHVVFDKQQFPF 2579
            Y+  KL F+SK CVF+GYS NH GYRC D  S R+Y+SRHVVFD+  FP+
Sbjct: 969  YSRDKLDFKSKQCVFLGYSLNHSGYRCWDPISNRLYISRHVVFDESLFPY 1018


>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
          Length = 1271

 Score =  570 bits (1469), Expect = e-159
 Identities = 289/545 (53%), Positives = 385/545 (70%), Gaps = 2/545 (0%)
 Frame = -3

Query: 1924 QNRMVTRLQSGIRKPNSKFAMNIHLSTPPEQEPTSYTQASKSPEWRTAMGAEFDALIQAG 1745
            Q+ MVTR ++GI K    F+ +I        EPT++TQA K   W  AM  EF AL +  
Sbjct: 687  QHPMVTRAKNGISKKKVYFSSHI-------SEPTTFTQAVKDSNWVLAMEKEFSALQRNN 739

Query: 1744 TWTLVPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDTFSPVVKH 1565
            TW LVPP S+ NI+  KWV+K+K K DG+++RYKARLVA GF Q  GL++ +TFSPVVK 
Sbjct: 740  TWHLVPPPSNGNIIGCKWVYKLKYKPDGTVDRYKARLVAQGFTQTLGLBYFETFSPVVKA 799

Query: 1564 TTIRVILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVCRLHRSLY 1385
            +TIR+ILA+ +S  W + QLDVQNAFLHG + E V+M+QP GF++  YPSHVC+L+++LY
Sbjct: 800  STIRIILAVALSFNWSVHQLDVQNAFLHGDLEEHVFMQQPPGFINSQYPSHVCKLNKALY 859

Query: 1384 GLRQAPRAWHKRFSDYLEEVGFVMSQADHSLFIYRFGIIFIVLLIYVDDILVTGNDVVKI 1205
            GL+QAPRAW+ + S  L   GF  S+AD S+FI+      ++LLIYVDDILVTG+   ++
Sbjct: 860  GLKQAPRAWYNKLSTSLLGWGFQASRADSSMFIHHSTHDVLILLIYVDDILVTGSSSAQV 919

Query: 1204 RALVDSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVDSKPLATP 1025
             + +  L+S F ++DLG VNYFLGIE+ + GT   ++Q  Y  +LL RT  +DSKP  TP
Sbjct: 920  SSFITRLNSSFALRDLGYVNYFLGIEVVRSGTMFHLSQHKYTQDLLSRTAMLDSKPATTP 979

Query: 1024 VAAG*KLSLFDGDPLSDPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHKSTTVHWMAV 845
               G  LS  DG+P SD T YRS VGALQYLTL+RPD+S+AVN+ CQFM   TT HW+AV
Sbjct: 980  GLLGQTLSHLDGEPFSDATLYRSTVGALQYLTLTRPDISFAVNKACQFMATPTTTHWLAV 1039

Query: 844  KRILRYLKGSVQYGLVYQPGSNL-IQAYSDADYAGNPDDRHSTGGYVVYFGLNPISWSAK 668
            KRILRYLKG++ YG+  Q  ++L I  Y+DAD+A  PDDR STGGY ++ G N +SWS+ 
Sbjct: 1040 KRILRYLKGTLSYGIQMQQSTSLDIHGYTDADWASCPDDRRSTGGYGIFLGPNLVSWSSN 1099

Query: 667  KQRTVSRSSTEAEYRQLAYTAAELSCIRALFRDLGV-GLPVPTLWCENISSIALASNPVF 491
            KQ+ VSRSS E+EYR LA   +E+  I+ + ++L +     P LWC+N S+  LA+NPVF
Sbjct: 1100 KQKVVSRSSAESEYRALASATSEMIWIQYVLQELCLSSSSPPLLWCDNKSAAHLAANPVF 1159

Query: 490  HARTKHLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGLSRQRFAGLRFKLMVRDSP 311
            HARTKH+E+D H++R+ VLR +LVI+Y+ + +QVADIF K +S  +F   R KL V  SP
Sbjct: 1160 HARTKHIEMDLHFIRDHVLRKQLVIQYLPSAEQVADIFTKHISSSQFLSFRTKLSVVPSP 1219

Query: 310  ISLRG 296
            +SLRG
Sbjct: 1220 VSLRG 1224



 Score =  186 bits (471), Expect = 9e-44
 Identities = 85/153 (55%), Positives = 112/153 (73%)
 Frame = -3

Query: 3037 AFQNFLVKHGIQFRSSCPHHPEQNGIAERKHRHIVDTGLTLLAHASMPLTYWVEAFSTAV 2858
            AF ++L  HGI+ + SCP+ PEQNG AERK RHI++TGL LLA AS+P  +W+ AF T +
Sbjct: 462  AFSSYLATHGIKSQFSCPYTPEQNGRAERKLRHIIETGLALLATASLPFKFWLYAFHTTI 521

Query: 2857 YLINRLPTKVLHQQIPFTKLFHEKPKFDTLRTFGSAFFPCLRPYNAHKLHFRSKLCVFIG 2678
            +LINRLPTKVL+ Q PF  LF + P +   + FG   +P +RPYN +KL +RS  CVF+G
Sbjct: 522  FLINRLPTKVLNYQSPFQILFGKSPNYHIFKIFGCLCYPYIRPYNKNKLSYRSSQCVFLG 581

Query: 2677 YSSNHMGYRCLDVPSGRVYLSRHVVFDKQQFPF 2579
            YSSNH GY CL+  +GR+Y++RHVVF +  FPF
Sbjct: 582  YSSNHKGYMCLNPLTGRLYVTRHVVFHETVFPF 614


>emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera]
          Length = 1172

 Score =  565 bits (1455), Expect = e-158
 Identities = 272/544 (50%), Positives = 384/544 (70%), Gaps = 9/544 (1%)
 Frame = -3

Query: 1933 TAEQNRMVTRLQSGIRKPNSKFAMNIHLSTPPEQEPTSYTQASKSPEWRTAMGAEFDALI 1754
            T   + M TR ++ IRKP  K  ++I LS P + EPT+ TQA K P+WR AM  E+DAL+
Sbjct: 621  TNSNHSMQTRAKNNIRKPIQKLNLHIQLSKPLDLEPTTPTQALKDPKWRKAMSEEYDALV 680

Query: 1753 QAGTWTLVPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDTFSPV 1574
            + GTW LVP   S N++  KW+F+ KR SDGSI+R+KARLVA GFHQ+  +D++DTFSPV
Sbjct: 681  RNGTWELVPSNPSQNVVGCKWIFRTKRNSDGSIDRFKARLVAKGFHQRPDIDYYDTFSPV 740

Query: 1573 VKHTTIRVILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVCRLHR 1394
            VK TTI ++L++ VS+GW ++QLDV N FL G + E VYM QP GF+D + PSHVC+L +
Sbjct: 741  VKPTTIMLVLSVAVSNGWILRQLDVNNVFLQGTLTEHVYMTQPPGFIDQDSPSHVCKLKK 800

Query: 1393 SLYGLRQAPRAWHKRFSDYLEEVGFVMSQADHSLFIYRFGIIFIVLLIYVDDILVTGNDV 1214
            ++YGL+QAPRAW++    +L + GF  S AD SLF+ +F    +  L+YVDD+++TG+D 
Sbjct: 801  AIYGLKQAPRAWYQELRSFLLQFGFTNSHADTSLFVLKFRGHLVYFLVYVDDLIITGDDE 860

Query: 1213 VKIRALVDSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVDSKPL 1034
              +   +  L ++F +KDLG ++YFLG+EI     G L++Q  Y L+LL RT   ++KP+
Sbjct: 861  HLVNRYIHLLANRFSLKDLGKLSYFLGVEIVPNSQGFLLSQRRYLLDLLARTHMSEAKPV 920

Query: 1033 ATPVAAG*KLSLFDGDPLSDPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHKSTTVHW 854
             TP+ +G K+SL  GD LSDPTE+R+VVG+LQYL L+R D+++A N++ QFMH  TT HW
Sbjct: 921  QTPLPSGTKISLHSGDKLSDPTEFRAVVGSLQYLLLTRLDIAFAANKLSQFMHTPTTEHW 980

Query: 853  MAVKRILRYLKGSVQYGLVYQPGSNL--------IQAYSDADYAGNPDDRHSTGGYVVYF 698
              VKR+LRYL G+  + L     S L        + AYSDAD+AG+PDD  STG Y+VY 
Sbjct: 981  TLVKRLLRYLCGTPDHSLQLYCDSPLSLHAFSDALHAYSDADWAGDPDDFSSTGAYIVYL 1040

Query: 697  GLNPISWSAKKQRTVSRSSTEAEYRQLAYTAAELSCIRALFRDLGVGLPV-PTLWCENIS 521
            G NPISWS+KKQ+ ++RSSTEAEYR +A TAAEL+ + +L  DLG+ LP  P ++C+N+ 
Sbjct: 1041 GRNPISWSSKKQKNIARSSTEAEYRFVANTAAELNWVSSLLCDLGIQLPTCPVIYCDNVG 1100

Query: 520  SIALASNPVFHARTKHLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGLSRQRFAGL 341
            +  + SNPVFH+R KH+  D+H++R++V +G L + ++++ DQ+AD+  K L R RF  L
Sbjct: 1101 ATQVCSNPVFHSRMKHVAFDFHFIRDQVQKGILRVAHVSSTDQLADLLTKSLPRARFLFL 1160

Query: 340  RFKL 329
            R K+
Sbjct: 1161 RDKI 1164



 Score =  142 bits (359), Expect = 8e-31
 Identities = 69/132 (52%), Positives = 87/132 (65%)
 Frame = -3

Query: 3091 NTTIKAFQSDGGGEYTKRAFQNFLVKHGIQFRSSCPHHPEQNGIAERKHRHIVDTGLTLL 2912
            N  I    SD GGEY   +  NFL  HGI   ++ PH PE NG +ER+H HIV+TGLTLL
Sbjct: 481  NQNIHTLYSDNGGEYI--SLSNFLALHGISHLTTPPHTPEHNGFSERRHLHIVETGLTLL 538

Query: 2911 AHASMPLTYWVEAFSTAVYLINRLPTKVLHQQIPFTKLFHEKPKFDTLRTFGSAFFPCLR 2732
            +HAS+PL YW  AF+TAVYLINR+PT  L+   P+ K+F   P +  L+ FG   +P LR
Sbjct: 539  SHASIPLPYWSNAFATAVYLINRMPTPTLNLLSPYEKIFGTPPNYSKLKIFGCLCYPWLR 598

Query: 2731 PYNAHKLHFRSK 2696
            PY++HKL   SK
Sbjct: 599  PYSSHKLDSSSK 610


>emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]
          Length = 1434

 Score =  563 bits (1452), Expect = e-157
 Identities = 285/541 (52%), Positives = 384/541 (70%), Gaps = 1/541 (0%)
 Frame = -3

Query: 1915 MVTRLQSGIRKPNSKFAMNIHLSTPPEQEPTSYTQASKSPEWRTAMGAEFDALIQAGTWT 1736
            MVTR +SGI K  S    +         EP +Y+QASK+  W  AM +E+ AL++  TW+
Sbjct: 837  MVTRAKSGIHKKRSFIVQHT-------TEPRTYSQASKNDSWVQAMNSEYQALLRNNTWS 889

Query: 1735 LVPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDTFSPVVKHTTI 1556
            LVPP SS +I+  +W++K+K + DGSI+R+KARLVA GF Q  G+D+ DTFSPVVK  TI
Sbjct: 890  LVPPPSSAHIVGCRWIYKLKYRPDGSIDRHKARLVAQGFTQTPGIDYFDTFSPVVKPCTI 949

Query: 1555 RVILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVCRLHRSLYGLR 1376
            R+ILAL VS  W ++QLDV+NAFL+G + EEV+M QP+GFV+P YP++VC+LH++LYGL+
Sbjct: 950  RLILALAVSFQWSVRQLDVENAFLNGDLEEEVFMTQPQGFVNPTYPTYVCKLHKALYGLK 1009

Query: 1375 QAPRAWHKRFSDYLEEVGFVMSQADHSLFIYRFGIIFIVLLIYVDDILVTGNDVVKIRAL 1196
            QAPRAW ++    L + GF  S+AD SLFI+      ++LL+YVDDILVTG++ + +   
Sbjct: 1010 QAPRAWFQKLRIALLDYGFQSSRADTSLFIFHTATDILILLVYVDDILVTGSNPMLVSHF 1069

Query: 1195 VDSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVDSKPLATPVAA 1016
            +  L +KF ++DLG ++YFLGI+  + G+ + + Q  Y  +LL RT    SKP  TP   
Sbjct: 1070 ISYLRTKFALRDLGPLSYFLGIQAQQLGSVLHLNQHKYIADLLNRTQMETSKPAPTPGRL 1129

Query: 1015 G*KLSLFDGDPLSDPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHKSTTVHWMAVKRI 836
            G  LS  DG  LSDP+EYR  VGALQY+TL+RPD+++AVN+ CQFM K + VHWMAVKRI
Sbjct: 1130 GRTLSQSDGMSLSDPSEYRRTVGALQYVTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRI 1189

Query: 835  LRYLKGSVQYGLVYQPGSNL-IQAYSDADYAGNPDDRHSTGGYVVYFGLNPISWSAKKQR 659
            LRYLKG++  GL +QP +++ +Q YSDAD+A  PDDR ST GY V+ G N ISWS+ KQR
Sbjct: 1190 LRYLKGTIHLGLHFQPAASMELQGYSDADWASCPDDRRSTSGYCVFLGSNLISWSSSKQR 1249

Query: 658  TVSRSSTEAEYRQLAYTAAELSCIRALFRDLGVGLPVPTLWCENISSIALASNPVFHART 479
             VS+SS E+EYR L    AEL  I++L ++L +    P LWC+N S+  LA+NPVFH+R+
Sbjct: 1250 LVSKSSAESEYRGLVSLTAELVWIQSLLQELCLPTSPPILWCDNQSAAHLAANPVFHSRS 1309

Query: 478  KHLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGLSRQRFAGLRFKLMVRDSPISLR 299
            KH+E+D H++REKVLR EL I Y+ + DQ+ADIF K L   +F  LR KL V   P+SLR
Sbjct: 1310 KHIELDLHFIREKVLRQELQICYVPSGDQLADIFTKHLPITQFCNLRSKLTVTYPPLSLR 1369

Query: 298  G 296
            G
Sbjct: 1370 G 1370



 Score =  198 bits (504), Expect = 1e-47
 Identities = 95/170 (55%), Positives = 117/170 (68%)
 Frame = -3

Query: 3088 TTIKAFQSDGGGEYTKRAFQNFLVKHGIQFRSSCPHHPEQNGIAERKHRHIVDTGLTLLA 2909
            TTIK  QSD GGE+   AF+ +L  HGI  + SCPH P+QNG AERK RH+V+TGL L+A
Sbjct: 598  TTIKCIQSDNGGEFL--AFKPYLEAHGILHQFSCPHTPQQNGRAERKIRHLVETGLALMA 655

Query: 2908 HASMPLTYWVEAFSTAVYLINRLPTKVLHQQIPFTKLFHEKPKFDTLRTFGSAFFPCLRP 2729
             + +P  YW  AF TAVYLIN LP K+LH Q P   LFH+ P +  LR FG   FP LRP
Sbjct: 656  QSFLPSKYWTYAFQTAVYLINLLPAKLLHFQSPTQTLFHKLPNYHHLRVFGCLCFPSLRP 715

Query: 2728 YNAHKLHFRSKLCVFIGYSSNHMGYRCLDVPSGRVYLSRHVVFDKQQFPF 2579
            Y  HKL +RS  CVF+GY+  H GY CLDV + R+Y+SR+V+F +  FPF
Sbjct: 716  YTQHKLCYRSTACVFLGYAPAHKGYLCLDVSTNRIYISRNVIFHESSFPF 765


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score =  559 bits (1440), Expect = e-156
 Identities = 286/538 (53%), Positives = 377/538 (70%), Gaps = 7/538 (1%)
 Frame = -3

Query: 1921 NRMVTRLQSGIRKPNSKFAMNIHLSTP---PEQEPTSYTQASKSPEWRTAMGAEFDALIQ 1751
            +R  TRLQSGIRK        +   T       EP +   A K   W+ AM AEF AL  
Sbjct: 705  SRPATRLQSGIRKEKVYTDGTVKYRTTFLTVTGEPENLDDALKDNNWKKAMDAEFMALQN 764

Query: 1750 AGTWTLVPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDTFSPVV 1571
              TW LVPP    N++  KWV+KIKRK DGS++RYKARLVA GF Q+ G+D+ DTFSPVV
Sbjct: 765  NKTWHLVPPQKGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVV 824

Query: 1570 KHTTIRVILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVCRLHRS 1391
            K  TIR+IL++ VS GWC++QLDVQNAFLHG++ EEVYM+QP G+ D + P +VC+L ++
Sbjct: 825  KAATIRIILSIAVSKGWCMRQLDVQNAFLHGVLEEEVYMKQPPGYEDSSLPGYVCKLDKA 884

Query: 1390 LYGLRQAPRAWHKRFSDYLEEVGFVMSQADHSLFIYRFGIIFIVLLIYVDDILVTGNDVV 1211
            LYGL+QAPRAW+ R S  L ++GF  S+AD SLF Y  G + I +LIYVDDI+VT +   
Sbjct: 885  LYGLKQAPRAWYSRLSKKLYDMGFQGSKADTSLFFYNKGDLIIFVLIYVDDIIVTSSRQE 944

Query: 1210 KIRALVDSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVDSKPLA 1031
             + AL+  L  +F +KDLG ++YFLGIE+ K   G+++TQ  Y  +LL+R    D KP++
Sbjct: 945  AVPALLRDLQKEFALKDLGDLHYFLGIEVTKVSGGIVLTQDKYVNDLLRRVNMFDCKPVS 1004

Query: 1030 TPVAAG*KLSLFDGDPL--SDPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHKSTTVH 857
            TP++   KLS+ +GDPL  +D T YRSVVGALQYLTL+RPD+++ VN+VCQF+H  TT H
Sbjct: 1005 TPLSTSEKLSINEGDPLGPNDATHYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTHH 1064

Query: 856  WMAVKRILRYLKGSVQYGL-VYQPGSNLIQAYSDADYAGNPDDRHSTGGYVVYFGLNPIS 680
            W AVKRILRYLK   + GL + +  S L+ AYSDAD+AG+ DDR STGG+ V+ G N +S
Sbjct: 1065 WAAVKRILRYLKQCTRLGLKLSKSRSMLVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVS 1124

Query: 679  WSAKKQRTVSRSSTEAEYRQLAYTAAELSCIRALFRDLGVGLP-VPTLWCENISSIALAS 503
            WSA+KQ TVSRSSTE+EY+ LA   AE+  ++ L  +L V  P +  LWC+N+ +  L++
Sbjct: 1125 WSARKQATVSRSSTESEYKALANATAEIMWVQTLLAELQVESPSMAKLWCDNLGAKYLSA 1184

Query: 502  NPVFHARTKHLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGLSRQRFAGLRFKL 329
            NPVFHARTKH+EVDYH+VRE+V R  L I ++ T DQVAD F K LS ++    ++ L
Sbjct: 1185 NPVFHARTKHIEVDYHFVRERVSRKLLEIDFVPTGDQVADGFTKALSVRQLENFKYNL 1242



 Score =  198 bits (503), Expect = 2e-47
 Identities = 96/172 (55%), Positives = 120/172 (69%)
 Frame = -3

Query: 3091 NTTIKAFQSDGGGEYTKRAFQNFLVKHGIQFRSSCPHHPEQNGIAERKHRHIVDTGLTLL 2912
            N  I A QSD GGEY K    +F  K GI    SCPH  +QNG AERKHRHIV+ GL LL
Sbjct: 372  NRKILAMQSDWGGEYEK--LNSFFTKIGITHHVSCPHTHQQNGSAERKHRHIVEMGLALL 429

Query: 2911 AHASMPLTYWVEAFSTAVYLINRLPTKVLHQQIPFTKLFHEKPKFDTLRTFGSAFFPCLR 2732
            A++SMPL +W EAF++AVYLINR P+++L    P  +LF + P ++ LR FG A +P LR
Sbjct: 430  AYSSMPLKFWDEAFTSAVYLINRTPSRLLKYATPLERLFKQTPDYNLLRVFGCACWPHLR 489

Query: 2731 PYNAHKLHFRSKLCVFIGYSSNHMGYRCLDVPSGRVYLSRHVVFDKQQFPFS 2576
            PYNA KL FRSK C F+GYS  H G++CLD  +GRVY+S  V+FD+  FPF+
Sbjct: 490  PYNARKLQFRSKQCTFLGYSPLHKGFKCLDPSTGRVYISHDVIFDENVFPFA 541


>emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]
          Length = 773

 Score =  558 bits (1438), Expect = e-156
 Identities = 283/541 (52%), Positives = 380/541 (70%), Gaps = 1/541 (0%)
 Frame = -3

Query: 1915 MVTRLQSGIRKPNSKFAMNIHLSTPPEQEPTSYTQASKSPEWRTAMGAEFDALIQAGTWT 1736
            MVTR +SGI K  S    +         EP +Y+QA K+  W  AM +E+ AL++  TW+
Sbjct: 184  MVTRAKSGIHKKRSFIVQHT-------TEPRTYSQAFKNDSWVQAMNSEYQALLRNNTWS 236

Query: 1735 LVPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDTFSPVVKHTTI 1556
            LVPP SS +I+  +W++K+K + DGSI+R+KARLVA GF Q  G+D+ DTFSPVVK  TI
Sbjct: 237  LVPPPSSAHIVGCRWIYKLKYRPDGSIDRHKARLVAQGFTQTPGIDYFDTFSPVVKPCTI 296

Query: 1555 RVILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVCRLHRSLYGLR 1376
            R+ILAL VS  W ++QLDV+N FL+G + EEV+M QP+GFV+P YP++VC+LH++LYGL+
Sbjct: 297  RLILALAVSFQWSVRQLDVENGFLNGDLEEEVFMTQPQGFVNPTYPTYVCKLHKALYGLK 356

Query: 1375 QAPRAWHKRFSDYLEEVGFVMSQADHSLFIYRFGIIFIVLLIYVDDILVTGNDVVKIRAL 1196
            QAPRAW ++    L + GF  S+AD SLFI+      ++LL+YVDDILVTG++   +   
Sbjct: 357  QAPRAWFQKLRIALLDYGFQSSRADTSLFIFHTATDILILLVYVDDILVTGSNPTLVSHF 416

Query: 1195 VDSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVDSKPLATPVAA 1016
            +  L +KF ++DLG ++YFLGI+  + G+ + + Q  Y  +LL RT    SKP  TP   
Sbjct: 417  ISYLRTKFALRDLGPLSYFLGIQAQQLGSVLHLNQHKYIADLLNRTQMETSKPAPTPGRL 476

Query: 1015 G*KLSLFDGDPLSDPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHKSTTVHWMAVKRI 836
            G  LS  DG  LSDP+EYR  VGALQY+TL+RPD+++AVN+ CQFM K + VHWMAVKRI
Sbjct: 477  GRTLSQSDGVSLSDPSEYRRTVGALQYVTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRI 536

Query: 835  LRYLKGSVQYGLVYQPGSNL-IQAYSDADYAGNPDDRHSTGGYVVYFGLNPISWSAKKQR 659
            LRYLKG++  GL +QP +++  Q YSDAD+A  PDDR ST GY V+ G N ISWS+ KQR
Sbjct: 537  LRYLKGTIHLGLHFQPAASMEXQGYSDADWASCPDDRRSTSGYCVFLGSNLISWSSSKQR 596

Query: 658  TVSRSSTEAEYRQLAYTAAELSCIRALFRDLGVGLPVPTLWCENISSIALASNPVFHART 479
             VS+SS E+EYR L    AEL  I++L ++L +    P LWC+N S+  LA+NPVFH+R+
Sbjct: 597  LVSKSSAESEYRGLVSLTAELVWIQSLLQELCLPTSPPILWCDNQSAAHLAANPVFHSRS 656

Query: 478  KHLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGLSRQRFAGLRFKLMVRDSPISLR 299
            KH+E+D H++REKVLR EL I Y+ + DQ+ADIF K L   +F  LR KL V   P+SLR
Sbjct: 657  KHIELDLHFIREKVLRQELQICYVPSGDQLADIFTKHLPITQFCNLRSKLTVTYPPLSLR 716

Query: 298  G 296
            G
Sbjct: 717  G 717



 Score =  132 bits (333), Expect = 9e-28
 Identities = 73/173 (42%), Positives = 97/173 (56%), Gaps = 1/173 (0%)
 Frame = -3

Query: 2914 LAHASMPLTYWVEAFSTAVYLINRLPTKVLHQQIPFTKLFHEKPKFDTLRTFGSAFFPCL 2735
            +A + +P  YW  AF TAVYLIN LP K+LH Q P   LFH+ P +  LR FG   FP L
Sbjct: 1    MAQSFLPSKYWTYAFQTAVYLINLLPAKLLHFQSPTQTLFHKLPNYHHLRVFGCLCFPSL 60

Query: 2734 RPYNAHKLHFRSKLCVFIGYSSNHMGYRCLDVPSGRVYLSRHVVFDKQQFPF-SXXXXXX 2558
            RPY  HKL +RS  CVF+GY+  H GY CLDV + R+Y+SR+V+F +  FPF S      
Sbjct: 61   RPYTQHKLCYRSTACVFLGYAPAHKGYLCLDVSTNRIYISRNVIFHESSFPFQSSSPPSS 120

Query: 2557 XTPAVDIETFCLANXXXXXXXXXXXSAVDQTKVLTPPLNNGPVDNLAPCLPLP 2399
             +P +   T  L N           SA     V +P + +   D++ P +P+P
Sbjct: 121  PSPHLPSSTPALIN-------SPSLSAPSSPAVSSPIITS---DSIPPLIPVP 163


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  558 bits (1437), Expect = e-156
 Identities = 284/530 (53%), Positives = 377/530 (71%), Gaps = 6/530 (1%)
 Frame = -3

Query: 1909 TRLQSGIRKPNSKFAMNIHLSTPPEQ--EPTSYTQASKSPEWRTAMGAEFDALIQAGTWT 1736
            TRLQ GI KP       +       +  EP+S ++A   P+WR AM AEF AL +  TWT
Sbjct: 896  TRLQHGISKPKQFTDGTVRYGNAAARITEPSSVSEALADPQWRAAMEAEFQALQKNNTWT 955

Query: 1735 LVPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDTFSPVVKHTTI 1556
            LVPP  + N++  KWVFK+K  +DGSI+R KARLVA GF QQ G+D+ DTFSPVVKH+TI
Sbjct: 956  LVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFKQQYGIDYDDTFSPVVKHSTI 1015

Query: 1555 RVILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVCRLHRSLYGLR 1376
            R++L+L VS  W ++QLDVQNAFLHGI+ E VYM+QP GF D  +P++ C L +SLYGL+
Sbjct: 1016 RLVLSLAVSQKWSLRQLDVQNAFLHGILEETVYMKQPPGFADTTHPNYHCHLQKSLYGLK 1075

Query: 1375 QAPRAWHKRFSDYLEEVGFVMSQADHSLFIYRFGIIFIVLLIYVDDILVTGNDVVKIRAL 1196
            Q PRAW+ R S+ L+ +GFV S+AD SLFIY      I +L+YVDDI++TG+    I  +
Sbjct: 1076 QRPRAWYSRLSEKLQSLGFVPSKADVSLFIYNAHSTAIYILVYVDDIIITGSSPHAIDNV 1135

Query: 1195 VDSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVDSKPLATPVAA 1016
            +  L   F +KDLG ++YFLGIE+++KG G+L+ Q  YA +LLKR G    KP+ TPVA 
Sbjct: 1136 LAKLKDDFAIKDLGDLHYFLGIEVHRKGDGLLLCQEKYARDLLKRVGMECCKPVHTPVAT 1195

Query: 1015 G*KLSLFDGDPLS--DPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHKSTTVHWMAVK 842
              KLS   G  LS  + T+YRSVVGALQYLTL+RPDLSYA+N+VCQF+H  T +HW AVK
Sbjct: 1196 SEKLSASAGTLLSPEETTKYRSVVGALQYLTLTRPDLSYAINRVCQFLHAPTDLHWTAVK 1255

Query: 841  RILRYLKGSVQYGLVYQPG-SNLIQAYSDADYAGNPDDRHSTGGYVVYFGLNPISWSAKK 665
            RILR ++ ++  GL  +P  S ++ A+SDAD+AG PDDR STGGY ++ G N ISW++KK
Sbjct: 1256 RILRNIQHTIGLGLTIRPSLSLMLSAFSDADWAGCPDDRKSTGGYALFLGPNLISWNSKK 1315

Query: 664  QRTVSRSSTEAEYRQLAYTAAELSCIRALFRDLGVGLP-VPTLWCENISSIALASNPVFH 488
            Q TVSRSSTEAEY+ +A   AE+  +++L  +LG+ L  +P LWC+N+ +  L+S P+F+
Sbjct: 1316 QSTVSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTGIPRLWCDNLGATYLSSKPIFN 1375

Query: 487  ARTKHLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGLSRQRFAGLR 338
            ARTKH+EVD+H+VR++VL  +L IR I+T DQVAD F K L+  R    R
Sbjct: 1376 ARTKHIEVDFHFVRDRVLSKKLDIRLISTNDQVADGFTKALTIGRLNEFR 1425



 Score =  192 bits (488), Expect = 9e-46
 Identities = 95/169 (56%), Positives = 114/169 (67%)
 Frame = -3

Query: 3082 IKAFQSDGGGEYTKRAFQNFLVKHGIQFRSSCPHHPEQNGIAERKHRHIVDTGLTLLAHA 2903
            I AFQSD GGEY K          GI  + SCPH  +QNG AERKHRHIV+ GL LLA +
Sbjct: 577  IIAFQSDWGGEYEK--LNAHFKTIGIHHQVSCPHTHQQNGAAERKHRHIVEVGLALLAQS 634

Query: 2902 SMPLTYWVEAFSTAVYLINRLPTKVLHQQIPFTKLFHEKPKFDTLRTFGSAFFPCLRPYN 2723
            SMPL YW  AF  AVYLINR P+K +    P  KL    P + +LR FG A +P LRPYN
Sbjct: 635  SMPLKYWDHAFLAAVYLINRTPSKTIAHDTPLHKLTGATPDYSSLRIFGCACWPNLRPYN 694

Query: 2722 AHKLHFRSKLCVFIGYSSNHMGYRCLDVPSGRVYLSRHVVFDKQQFPFS 2576
             HKL FRS  CVF+GYS+ H G++CLD+ +GR+Y+SR VVFD+  FPF+
Sbjct: 695  QHKLQFRSTRCVFLGYSNMHKGFKCLDISTGRIYISRDVVFDEHVFPFA 743


>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 932

 Score =  556 bits (1432), Expect = e-155
 Identities = 283/539 (52%), Positives = 377/539 (69%), Gaps = 5/539 (0%)
 Frame = -3

Query: 1930 AEQNRMVTRLQSGIRKPNSKFAMNIHLST-PPEQEPTSYTQASKSPEWRTAMGAEFDALI 1754
            ++Q R VTRLQ GI KP       +         EP +  +A  +  WR AM  E+ A +
Sbjct: 391  SDQTRPVTRLQKGISKPKRYTDGTVRYGCLTTTGEPENLREAMANSNWRLAMEQEYSAFM 450

Query: 1753 QAGTWTLVPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDTFSPV 1574
               TW LVPPT   NI+  KW++KIKRK+DGSI+RYKARLVA GF Q+ G+D+ DTFS V
Sbjct: 451  SNKTWHLVPPTQGKNIIDCKWMYKIKRKADGSIDRYKARLVAKGFKQRYGIDYEDTFSLV 510

Query: 1573 VKHTTIRVILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVCRLHR 1394
            VK  TIR+IL++ VS GW ++QLDVQNAFLHG + EEVYMRQP GF +   P+++C+L +
Sbjct: 511  VKAATIRLILSIAVSKGWSLRQLDVQNAFLHGYLEEEVYMRQPPGFENKGQPNYLCKLDK 570

Query: 1393 SLYGLRQAPRAWHKRFSDYLEEVGFVMSQADHSLFIYRFGIIFIVLLIYVDDILVTGNDV 1214
            +LYGL+QAPRAW+ R S  L+E+GF+ S+AD SLF Y  G   I +L+YVDDI+V  +  
Sbjct: 571  ALYGLKQAPRAWYSRLSTKLQELGFISSKADTSLFFYNKGGCTIFILVYVDDIIVASSSA 630

Query: 1213 VKIRALVDSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVDSKPL 1034
              + AL+  L   F +KDLG ++YFLGIE+ K   G++++Q  YA ++LKR G    KP 
Sbjct: 631  EVVAALLKDLEKDFALKDLGDLHYFLGIEVKKVSQGLVLSQAWYASDILKRAGMSICKPA 690

Query: 1033 ATPVAAG*KLSLFDGDPL--SDPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHKSTTV 860
            +TP++   KLS+ DGD L  +D + YRS+VGALQYLTL+R DLS+ VN+VCQF+H  TTV
Sbjct: 691  STPLSTTEKLSIEDGDFLGQNDASHYRSIVGALQYLTLTRSDLSFLVNKVCQFLHSPTTV 750

Query: 859  HWMAVKRILRYLKGSVQYGLVY-QPGSNLIQAYSDADYAGNPDDRHSTGGYVVYFGLNPI 683
            HW AVKRILRY+KG+V++GL + +  S LI A+SDAD+AG  DDR STGG+ V+ G N I
Sbjct: 751  HWSAVKRILRYIKGTVEFGLRFGKSDSMLISAFSDADWAGCSDDRRSTGGFAVFLGPNLI 810

Query: 682  SWSAKKQRTVSRSSTEAEYRQLAYTAAELSCIRALFRDLGVGLP-VPTLWCENISSIALA 506
            SWSA+KQ TVSRSSTEAEY+ LA    E++ +R +  +L +  P V  LWC+N+ +  L+
Sbjct: 811  SWSARKQATVSRSSTEAEYKALANATTEVTWVRKILDELRIARPSVAQLWCDNLGATYLS 870

Query: 505  SNPVFHARTKHLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGLSRQRFAGLRFKL 329
            +NPVFHARTKH+E+DYH+VRE+V +  L I++I+T DQ+AD F K L     A  R  L
Sbjct: 871  ANPVFHARTKHIEIDYHFVREQVAKKLLDIQFISTTDQLADGFTKSLPAPSLAQYRHNL 929


>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 900

 Score =  555 bits (1431), Expect = e-155
 Identities = 283/546 (51%), Positives = 376/546 (68%), Gaps = 14/546 (2%)
 Frame = -3

Query: 1924 QNRMVTRLQSGIRKPNSKFAMNIHLSTPPEQ-EPTSYTQASKSPEWRTAMGAEFDALIQA 1748
            Q R VTR Q G+ +P       +      E  EP+S  +A  S  W+ AM  EF AL+  
Sbjct: 351  QQRPVTRSQHGVHRPKKYTDGTVRYGCLTETGEPSSLQEALSSANWKQAMDKEFSALLHN 410

Query: 1747 GTWTLVPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDTFSPVVK 1568
             TW LVPP    NI+ +KWV+KIK+K+DG+I+RYKARLVA GF Q+ G+D+ DTFSPVVK
Sbjct: 411  KTWHLVPPVKGKNIIDSKWVYKIKKKADGTIDRYKARLVAKGFKQRYGIDYEDTFSPVVK 470

Query: 1567 HTTIRVILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVCRLHRSL 1388
              TIR++L++ +S GW ++QLDVQNAFLHG + EEVYMRQP GF D   P  +C+L ++L
Sbjct: 471  AATIRLVLSIAMSQGWSLRQLDVQNAFLHGYLDEEVYMRQPPGFEDARQPHFLCKLDKAL 530

Query: 1387 YGLRQAPRAWHKRFSDYLEEVGFVMSQADHSLFIYRFGIIFIVLLIYVDDILVTGNDVVK 1208
            YGL+QAPRAW+ R S  L+E+GF  S+AD SLF Y  G   + +L+YVDDI+V  +    
Sbjct: 531  YGLKQAPRAWYSRLSKKLQELGFSSSKADTSLFFYNKGHHKMFVLVYVDDIIVASSSSPA 590

Query: 1207 IRALVDSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVDSKPLAT 1028
            + AL+  L   F +KDLG ++YFLGIE+ +    +L++Q  Y   LL+R      KP++T
Sbjct: 591  VNALLKDLEKDFALKDLGDLHYFLGIEVKRTPQTLLLSQERYTTELLERVNMTSCKPVST 650

Query: 1027 PVAAG*KLSLFDGDPL--SDPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHKSTTVHW 854
            P++   KLS+  GD L  SD T+YRS+VGALQYLTL+RPD+SY+VN+VCQF+   TT HW
Sbjct: 651  PLSTAEKLSVEIGDELGPSDVTQYRSIVGALQYLTLTRPDISYSVNKVCQFLQTPTTAHW 710

Query: 853  MAVKRILRYLKGSVQYGL-VYQPGSNLIQAYSDADYAGNPD---------DRHSTGGYVV 704
             AVKRILRYLKG++  GL + +  SNL+ A+SDAD+AG+ D         DR STGG+ V
Sbjct: 711  SAVKRILRYLKGTLDLGLKIVKSSSNLVSAFSDADWAGSVDDRRSTGGFADRRSTGGFAV 770

Query: 703  YFGLNPISWSAKKQRTVSRSSTEAEYRQLAYTAAELSCIRALFRDLGVGLP-VPTLWCEN 527
            +FG N ISWSA+KQ TVSRSSTEAEY+ LA  AAE+  +R L  +LG+  P    LWC+N
Sbjct: 771  FFGDNLISWSARKQATVSRSSTEAEYKALANAAAEIIWVRKLLTELGILHPNAARLWCDN 830

Query: 526  ISSIALASNPVFHARTKHLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGLSRQRFA 347
            + +  + +NPVFHARTKH+EVDYH+VRE+V +  L I ++++QDQVAD F K +S Q+  
Sbjct: 831  LGATYMTANPVFHARTKHIEVDYHFVREQVAQKLLDIHFVSSQDQVADGFTKPISLQQLI 890

Query: 346  GLRFKL 329
            G R  L
Sbjct: 891  GFRHNL 896



 Score =  206 bits (523), Expect = 8e-50
 Identities = 101/169 (59%), Positives = 123/169 (72%)
 Frame = -3

Query: 3082 IKAFQSDGGGEYTKRAFQNFLVKHGIQFRSSCPHHPEQNGIAERKHRHIVDTGLTLLAHA 2903
            IK+ Q+D GGEY +    +F  + GI    SCPH  +QNG AERKHRHIV+ GL+LLAHA
Sbjct: 10   IKSVQTDWGGEYQR--LNSFFQRIGISHHVSCPHAHQQNGSAERKHRHIVEVGLSLLAHA 67

Query: 2902 SMPLTYWVEAFSTAVYLINRLPTKVLHQQIPFTKLFHEKPKFDTLRTFGSAFFPCLRPYN 2723
            SMPL +W EAF TA YLINR P K++H   P   LF E+P ++ LRTFG A +P LRPYN
Sbjct: 68   SMPLKFWDEAFLTATYLINRTPMKIIHYDTP-AYLFEEQPDYNALRTFGCACWPNLRPYN 126

Query: 2722 AHKLHFRSKLCVFIGYSSNHMGYRCLDVPSGRVYLSRHVVFDKQQFPFS 2576
             HKL FRSK CVF+GYS  H G++CL+V SGRVY+SR VVFD+  FPF+
Sbjct: 127  THKLAFRSKQCVFLGYSPLHKGFKCLEVNSGRVYISRDVVFDENIFPFA 175


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
            gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
            Japonica Group]
          Length = 821

 Score =  555 bits (1430), Expect = e-155
 Identities = 278/523 (53%), Positives = 377/523 (72%), Gaps = 5/523 (0%)
 Frame = -3

Query: 1918 RMVTRLQSGIRKPNSKFAMNIH-LSTPPEQEPTSYTQASKSPEWRTAMGAEFDALIQAGT 1742
            R  TRLQSGIRK        +  L+     EP S  +A  +  W+ AM AE+ ALI+  T
Sbjct: 276  RPKTRLQSGIRKEKVYTDGTVKWLNFTSSGEPQSLEEAVNNKHWKEAMDAEYMALIENKT 335

Query: 1741 WTLVPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDTFSPVVKHT 1562
            W LVPP    N++  KWV+K+KRK+DGS++RYKARLVA GF Q+ G+D+ DTFSPVVK  
Sbjct: 336  WHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAA 395

Query: 1561 TIRVILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVCRLHRSLYG 1382
            TIR++L+L VS GW ++QLDV+NAFLHG++ EEVYM QP G+   + P++VC+L ++LYG
Sbjct: 396  TIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMEQPPGYEKKSMPNYVCKLDKALYG 455

Query: 1381 LRQAPRAWHKRFSDYLEEVGFVMSQADHSLFIYRFGIIFIVLLIYVDDILVTGNDVVKIR 1202
            L+QAPRAW+ R S  L E+GFV S+AD SLF Y+ G + I LLIYVDDI++  +      
Sbjct: 456  LKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVDDIIMASSVPDATS 515

Query: 1201 ALVDSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVDSKPLATPV 1022
             L+  L   F +KDLG ++YFLGIE++K   G++++Q  YA +LL+R G  + KP++TP+
Sbjct: 516  TLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPL 575

Query: 1021 AAG*KLSLFDGDPL--SDPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHKSTTVHWMA 848
            +   KLS+ +G  L   D T+YRSVVGALQYLTL+RPD+S+++N+VCQF+H  TT HW A
Sbjct: 576  STSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAA 635

Query: 847  VKRILRYLKGSVQYGLVY-QPGSNLIQAYSDADYAGNPDDRHSTGGYVVYFGLNPISWSA 671
            VKRILRY+K +V  GL + +  S L+  +SDAD+AG+PDDR STGG+ V+ G N +SWSA
Sbjct: 636  VKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSA 695

Query: 670  KKQRTVSRSSTEAEYRQLAYTAAELSCIRALFRDLGVGLP-VPTLWCENISSIALASNPV 494
            +KQ TVSRSSTEAEY+ LA   AE+  ++ L ++LGV  P    LWC+N+ +  L++NP+
Sbjct: 696  RKQATVSRSSTEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPI 755

Query: 493  FHARTKHLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGL 365
            FHARTKH+EVD+H+VRE+V R  L I YI+T+DQVAD F K +
Sbjct: 756  FHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAI 798



 Score =  134 bits (337), Expect = 3e-28
 Identities = 61/108 (56%), Positives = 78/108 (72%)
 Frame = -3

Query: 2899 MPLTYWVEAFSTAVYLINRLPTKVLHQQIPFTKLFHEKPKFDTLRTFGSAFFPCLRPYNA 2720
            MP+ +W EA   A YLINR P+KV++   P  +LF EKP +  LR FG A +P LRPYN 
Sbjct: 1    MPIKFWDEAVLAAAYLINRTPSKVINFACPLEQLFKEKPNYTALRIFGCAVWPNLRPYNK 60

Query: 2719 HKLHFRSKLCVFIGYSSNHMGYRCLDVPSGRVYLSRHVVFDKQQFPFS 2576
            HKL FRSK CVF+GYS+ H G++CL++ +GRVY+SR V FD+  FPFS
Sbjct: 61   HKLAFRSKRCVFLGYSNLHKGFKCLEIATGRVYVSRDVTFDESIFPFS 108


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  554 bits (1427), Expect = e-154
 Identities = 276/532 (51%), Positives = 373/532 (70%), Gaps = 5/532 (0%)
 Frame = -3

Query: 1942 ASCTAEQNRMVTRLQSGIRKPNSKFAMNIHLST-PPEQEPTSYTQASKSPEWRTAMGAEF 1766
            +S      R  TRLQ G+RKP       I         EP    +A     W+ AM  E+
Sbjct: 766  SSMDPASTRPRTRLQQGVRKPKVYTDGTIRYGCFTSSGEPYDLNEALGDVNWKDAMDIEY 825

Query: 1765 DALIQAGTWTLVPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDT 1586
             AL++  TW LVPP    N++  KWV+KIKRK+DGS++RYKARLVA G+ QQ G+D+ DT
Sbjct: 826  SALMKNKTWHLVPPKKGRNVIGCKWVYKIKRKADGSLDRYKARLVAKGYKQQYGIDYDDT 885

Query: 1585 FSPVVKHTTIRVILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVC 1406
            FSPVVKH TIR+IL++ VS GW + QLDVQNAFLHG++ EEVYM+QP G+ D    ++VC
Sbjct: 886  FSPVVKHATIRIILSIAVSRGWSLCQLDVQNAFLHGVLEEEVYMQQPPGYEDSTKLNYVC 945

Query: 1405 RLHRSLYGLRQAPRAWHKRFSDYLEEVGFVMSQADHSLFIYRFGIIFIVLLIYVDDILVT 1226
            +L ++LYGL+QAPRAW+ R S+ L  +GF  S+AD SLF Y  G + I +L+YVDDI+V 
Sbjct: 946  KLDKALYGLKQAPRAWYSRLSNKLLSLGFQASKADTSLFFYNKGSVTIFVLVYVDDIIVA 1005

Query: 1225 GNDVVKIRALVDSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVD 1046
             +      AL+  L+ +F +KDLG +NYFLGIE+NK   G+++TQ  YA +LLK+ G  D
Sbjct: 1006 SSTHKATEALLSDLNKEFALKDLGDLNYFLGIEVNKVRDGIILTQDKYASDLLKKVGMSD 1065

Query: 1045 SKPLATPVAAG*KLSLFDGDPL--SDPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHK 872
             KP++TP++   KLS+ +G PL   D T+YRS+VGALQYLTL+RPD++++VN+VCQF+H 
Sbjct: 1066 CKPISTPLSTSEKLSIHEGSPLGEKDITQYRSIVGALQYLTLTRPDIAFSVNKVCQFLHA 1125

Query: 871  STTVHWMAVKRILRYLKGSVQYGL-VYQPGSNLIQAYSDADYAGNPDDRHSTGGYVVYFG 695
             TT+HW AVKRILRY+K     GL +++  S L+ A+SDAD+AG+ DDR STGG+ V+ G
Sbjct: 1126 PTTLHWAAVKRILRYIKQCTNLGLHIHRSDSTLVSAFSDADWAGSVDDRKSTGGFAVFLG 1185

Query: 694  LNPISWSAKKQRTVSRSSTEAEYRQLAYTAAELSCIRALFRDLGVGLP-VPTLWCENISS 518
             N +SWSA+KQ TVSRSSTE+EY+ LA   AEL  ++ L  ++ +  P    LWC+N+ +
Sbjct: 1186 SNLVSWSARKQPTVSRSSTESEYKALANATAELIWVQILLTEISIKSPRAAKLWCDNLGA 1245

Query: 517  IALASNPVFHARTKHLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGLS 362
              L++NP+FHARTKH+EVDYH+VR++V +  L I Y+ T DQVAD F K LS
Sbjct: 1246 KYLSANPIFHARTKHIEVDYHFVRDRVAKKLLDIEYVPTGDQVADGFTKPLS 1297



 Score =  209 bits (532), Expect = 7e-51
 Identities = 101/169 (59%), Positives = 122/169 (72%)
 Frame = -3

Query: 3082 IKAFQSDGGGEYTKRAFQNFLVKHGIQFRSSCPHHPEQNGIAERKHRHIVDTGLTLLAHA 2903
            I A Q+D GGEY +     F  K GI    SCPH  +QNG AERKHRHIV+ GL+LLAHA
Sbjct: 424  ILAVQTDWGGEYQR--LNTFFNKIGISHLVSCPHAHQQNGSAERKHRHIVEVGLSLLAHA 481

Query: 2902 SMPLTYWVEAFSTAVYLINRLPTKVLHQQIPFTKLFHEKPKFDTLRTFGSAFFPCLRPYN 2723
            SMPL +W EAF  A YLINR PTK+L+   PF +LFH++P +  LR FG   +P LRPYN
Sbjct: 482  SMPLKFWDEAFLAAAYLINRTPTKILNLDTPFERLFHKQPDYSVLRIFGCVCWPNLRPYN 541

Query: 2722 AHKLHFRSKLCVFIGYSSNHMGYRCLDVPSGRVYLSRHVVFDKQQFPFS 2576
            +HKL FRSK CVF+GYSS H G++CLDV +GRVY+SR V FD+  FPF+
Sbjct: 542  SHKLQFRSKQCVFLGYSSLHKGFKCLDVSTGRVYVSRDVTFDENFFPFA 590


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score =  553 bits (1426), Expect = e-154
 Identities = 281/540 (52%), Positives = 372/540 (68%), Gaps = 5/540 (0%)
 Frame = -3

Query: 1927 EQNRMVTRLQSGIRKPNSKFAMNIHLST-PPEQEPTSYTQASKSPEWRTAMGAEFDALIQ 1751
            E +R VT LQ GIRK        +         EP     A     W+ AM A+F AL+ 
Sbjct: 714  EASRPVTHLQKGIRKEKIYTDRTVKYGCLTTTGEPRDLHDALHDTNWKHAMDAKFTALLH 773

Query: 1750 AGTWTLVPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDTFSPVV 1571
              TW LVPP    NI+  KWV+KIKRK DGS++RYKARLVA GF Q+ G+D+ DTFSPVV
Sbjct: 774  NKTWHLVPPQKGRNIIDYKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVV 833

Query: 1570 KHTTIRVILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVCRLHRS 1391
            K  TIR+IL++ VS GW ++QLDVQNAFLHGI+ EEVYM+QP G+ D  +P +VC+L ++
Sbjct: 834  KAATIRIILSIAVSRGWTLRQLDVQNAFLHGILEEEVYMKQPPGYEDKVHPDYVCKLDKA 893

Query: 1390 LYGLRQAPRAWHKRFSDYLEEVGFVMSQADHSLFIYRFGIIFIVLLIYVDDILVTGNDVV 1211
            LYGL+QAPRAW+ + S  L+ +GF  S+AD SLF Y  G + I +L+YVDDI+V  +   
Sbjct: 894  LYGLKQAPRAWYAKLSQKLQHLGFQGSKADTSLFFYNKGGLIIFVLVYVDDIIVASSRQD 953

Query: 1210 KIRALVDSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVDSKPLA 1031
             + AL+  L   F +KDLG ++YFLGIE+NK  +G+++TQ  Y  +LL+R G  D KP++
Sbjct: 954  AVPALLKDLQKDFALKDLGDLHYFLGIEVNKASSGIVLTQEKYVTDLLRRVGMTDCKPVS 1013

Query: 1030 TPVAAG*KLSLFDGDPL--SDPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHKSTTVH 857
            TP++   KL+L +GD L  +D + YRSVVGALQYLTL+RPD+ + VN+VCQF+H  T VH
Sbjct: 1014 TPLSTSEKLTLHEGDLLGPNDASNYRSVVGALQYLTLTRPDIYFPVNKVCQFLHAPTIVH 1073

Query: 856  WMAVKRILRYLKGSVQYGL-VYQPGSNLIQAYSDADYAGNPDDRHSTGGYVVYFGLNPIS 680
            W A+KRILRYLK   + GL + +  S L+  YSDAD+AGN DDR STGG+ V+ G N +S
Sbjct: 1074 WAAMKRILRYLKQCTKLGLKISKSKSMLVSGYSDADWAGNIDDRRSTGGFAVFLGDNLVS 1133

Query: 679  WSAKKQRTVSRSSTEAEYRQLAYTAAELSCIRALFRDLGV-GLPVPTLWCENISSIALAS 503
            W+AKKQ TV RSSTE+EY+ LA   AE+  I+ L  +L V   P+  LWC+N+ +  L+S
Sbjct: 1134 WNAKKQATVPRSSTESEYKALANATAEIMWIQTLLEELSVPSPPMARLWCDNLGAKYLSS 1193

Query: 502  NPVFHARTKHLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGLSRQRFAGLRFKLMV 323
            NPVFHARTKH+EVDYH+VRE++ R  L + +I T DQVAD F K LS ++    ++ L V
Sbjct: 1194 NPVFHARTKHIEVDYHFVRERMQRKLLEVEFIPTGDQVADGFTKALSARQLENFKYNLNV 1253



 Score =  206 bits (523), Expect = 8e-50
 Identities = 99/172 (57%), Positives = 121/172 (70%)
 Frame = -3

Query: 3091 NTTIKAFQSDGGGEYTKRAFQNFLVKHGIQFRSSCPHHPEQNGIAERKHRHIVDTGLTLL 2912
            N  I + Q+D GGEY K     F  K GI    SCPH  +QNG AERKHRHIV+ GL+LL
Sbjct: 403  NRKIISMQTDWGGEYQK--LNTFFNKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLSLL 460

Query: 2911 AHASMPLTYWVEAFSTAVYLINRLPTKVLHQQIPFTKLFHEKPKFDTLRTFGSAFFPCLR 2732
            AHAS+PL +W EA+ + VYLINR+PTKVL    P   LF + P +  LRTFG A +P LR
Sbjct: 461  AHASLPLKFWDEAYQSGVYLINRMPTKVLGYSSPLECLFKQTPDYQALRTFGCACWPDLR 520

Query: 2731 PYNAHKLHFRSKLCVFIGYSSNHMGYRCLDVPSGRVYLSRHVVFDKQQFPFS 2576
            PYN+HK+HFRSK C F+GYS  H G+RCLD  +GR+Y+SR VVFD+  FPF+
Sbjct: 521  PYNSHKMHFRSKRCTFLGYSPLHKGFRCLDSSTGRIYISRDVVFDESVFPFA 572


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score =  551 bits (1419), Expect = e-153
 Identities = 273/556 (49%), Positives = 387/556 (69%), Gaps = 2/556 (0%)
 Frame = -3

Query: 1933 TAEQNRMVTRLQSGIRKPNSKFAMNIHLSTPPEQEPTSYTQASKSPEWRTAMGAEFDALI 1754
            TA   RM TR   GI K  +     + LS     EP++  QA K P W  AM  E  AL 
Sbjct: 857  TALAPRMTTRSMRGITKKKTI----LDLSAIKVSEPSTLKQAFKDPNWTKAMEMEIAALH 912

Query: 1753 QAGTWTLVPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDTFSPV 1574
            +  TW LV    ++N++  KWV+K+K K DGSIERYKARLVA G++Q  GLD+ +TFSPV
Sbjct: 913  RNHTWDLVEQPPNVNVIGCKWVYKLKHKPDGSIERYKARLVAKGYNQTHGLDYFETFSPV 972

Query: 1573 VKHTTIRVILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVCRLHR 1394
            VK  TIR+IL + +S  W I+QLDV NAFL+G + E+VYM QP G+ DP +P+ VCRL +
Sbjct: 973  VKAATIRIILTVALSFKWEIRQLDVHNAFLNGELEEQVYMSQPPGYFDPQFPNRVCRLKK 1032

Query: 1393 SLYGLRQAPRAWHKRFSDYLEEVGFVMSQADHSLFIYRFGIIFIVLLIYVDDILVTGNDV 1214
            +LYGL+QAPRAW +R S  L + GF MS+ D S+F++      +++L+YVDDILVTG+  
Sbjct: 1033 ALYGLKQAPRAWFQRLSSALLQWGFSMSRTDSSMFLHFGKATTLIVLVYVDDILVTGSSS 1092

Query: 1213 VKIRALVDSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVDSKPL 1034
             +I +L+  L S F ++DLG +++FLGIE++     M ++QT Y  +LL RT   D+KP 
Sbjct: 1093 TQISSLIAKLDSVFALRDLGQLSFFLGIEVSYNEGSMTLSQTKYISDLLHRTELFDTKPA 1152

Query: 1033 ATPVAAG*KLSLFDGDPLSDPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHKSTTVHW 854
             TP A G  LS FDGDP++D T YRSVVGALQY+TL+RPD+++AVN+ CQFM + TT HW
Sbjct: 1153 NTPGAVGKNLSKFDGDPMTDVTHYRSVVGALQYVTLTRPDIAFAVNKACQFMQQPTTAHW 1212

Query: 853  MAVKRILRYLKGSVQYGLVYQPGSNL-IQAYSDADYAGNPDDRHSTGGYVVYFGLNPISW 677
            ++VKRILRYL+G++Q GL++ P SNL I+ ++DAD+  + DDR S+ GY+VY G N +SW
Sbjct: 1213 LSVKRILRYLRGTMQDGLLFSPSSNLTIEGFTDADWGAHLDDRRSSSGYLVYLGGNLVSW 1272

Query: 676  SAKKQRTVSRSSTEAEYRQLAYTAAELSCIRALFRDLGVGLP-VPTLWCENISSIALASN 500
            S+ KQ+ VSRSS E+EYR L +  AE+  ++AL ++L V +P +P LW +NIS+  +A N
Sbjct: 1273 SSTKQKVVSRSSAESEYRGLVFATAEIVWMQALLQELCVPIPAIPLLWYDNISAYHMAKN 1332

Query: 499  PVFHARTKHLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGLSRQRFAGLRFKLMVR 320
            PVFHARTKH+E+D H++R++V+RG++ ++++ T++Q  D+  K L+  RF  L+ +L + 
Sbjct: 1333 PVFHARTKHIEIDLHFIRDQVMRGKIQLQFVPTEEQPVDLLTKHLTSSRFLSLKSQLCIA 1392

Query: 319  DSPISLRGCVRPSSNQ 272
              P  LRG  +P + +
Sbjct: 1393 PRPFHLRGDDKPRTEE 1408



 Score =  195 bits (496), Expect = 1e-46
 Identities = 90/172 (52%), Positives = 118/172 (68%)
 Frame = -3

Query: 3091 NTTIKAFQSDGGGEYTKRAFQNFLVKHGIQFRSSCPHHPEQNGIAERKHRHIVDTGLTLL 2912
            +T IK  QSD GGE+  R+F +FL   GI  R SCP++  QNG  ERKHRH+V+TGL LL
Sbjct: 606  DTKIKCLQSDNGGEF--RSFTSFLQAVGIAHRFSCPYNSXQNGRVERKHRHVVETGLALL 663

Query: 2911 AHASMPLTYWVEAFSTAVYLINRLPTKVLHQQIPFTKLFHEKPKFDTLRTFGSAFFPCLR 2732
            +HAS+P+ YW  AF T  +LINR+P+KVL    P+  LF   P + + R FG   +P +R
Sbjct: 664  SHASLPMKYWHYAFQTXTFLINRMPSKVLEYDSPYFTLFRRHPDYKSFRVFGCLCYPFIR 723

Query: 2731 PYNAHKLHFRSKLCVFIGYSSNHMGYRCLDVPSGRVYLSRHVVFDKQQFPFS 2576
            PYN HKL +RS  C+F+GYS NH G+ CLD  +GRVY++ HVVFD+  FP +
Sbjct: 724  PYNTHKLQYRSVQCLFLGYSLNHKGFLCLDYATGRVYITPHVVFDESTFPLA 775


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  551 bits (1419), Expect = e-153
 Identities = 280/542 (51%), Positives = 374/542 (69%), Gaps = 7/542 (1%)
 Frame = -3

Query: 1933 TAEQNRMVTRLQSGIRKPNSKFAMNIHLSTP---PEQEPTSYTQASKSPEWRTAMGAEFD 1763
            T   +R  TRLQ GIRK        +           EP + T A ++  W+ AM  E++
Sbjct: 901  TQAPSRPTTRLQRGIRKEKVYTDGTVKYKNTFLTVTGEPKNLTDALQNTNWKKAMDIEYE 960

Query: 1762 ALIQAGTWTLVPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDTF 1583
            AL+   TW LVPP    N++  KWV+KIKRK DGS++RYKARLVA GF Q+ G+D+ DTF
Sbjct: 961  ALMNNKTWHLVPPKQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTF 1020

Query: 1582 SPVVKHTTIRVILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVCR 1403
            SPVVK  TIR++L++ VS GWC++QLDVQNAFLHG + EEVYM+QP G+ D ++P +VC+
Sbjct: 1021 SPVVKAATIRIVLSIAVSRGWCMRQLDVQNAFLHGFLEEEVYMKQPPGYEDESFPGYVCK 1080

Query: 1402 LHRSLYGLRQAPRAWHKRFSDYLEEVGFVMSQADHSLFIYRFGIIFIVLLIYVDDILVTG 1223
            L ++LYGL+QAPRAW+ R S  L ++GF  S+ D SLF Y  G + I +LIYVDDI+VT 
Sbjct: 1081 LDKALYGLKQAPRAWYSRLSKKLYDLGFQGSKGDTSLFFYNKGGLIIFVLIYVDDIIVTS 1140

Query: 1222 NDVVKIRALVDSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVDS 1043
            +    + AL+  L  +F +KDLG ++YFLGIE+NK    +++TQ  YA +LL+R    D 
Sbjct: 1141 SRQEAVSALLQDLKKEFALKDLGDLHYFLGIEVNKVTDEIILTQDKYACDLLRRVNMFDC 1200

Query: 1042 KPLATPVAAG*KLSLFDGDPLS--DPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHKS 869
            KP++TP++   KLS  +GD L   D T YRSVVGALQYLTL+RPD+++ VN+VCQF+H  
Sbjct: 1201 KPVSTPLSTSEKLSAHEGDLLGPLDATNYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAP 1260

Query: 868  TTVHWMAVKRILRYLKGSVQYGL-VYQPGSNLIQAYSDADYAGNPDDRHSTGGYVVYFGL 692
            TTVHW AVKRILRYLK   + GL + +  S L+ AYSDAD+AG+ DDR STGG+ V+ G 
Sbjct: 1261 TTVHWAAVKRILRYLKQCTKLGLKLCKSKSMLVSAYSDADWAGSLDDRRSTGGFAVFLGD 1320

Query: 691  NPISWSAKKQRTVSRSSTEAEYRQLAYTAAELSCIRALFRDLGV-GLPVPTLWCENISSI 515
            N +SW A+KQ TVSRSSTE+EY+ LA   AE+  ++ L  +L V   P+  LWC+N+ + 
Sbjct: 1321 NLVSWCARKQATVSRSSTESEYKALANATAEIMWVQTLLTELQVQSPPMAKLWCDNLGAK 1380

Query: 514  ALASNPVFHARTKHLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGLSRQRFAGLRF 335
             L+SNPVFHARTKH+EVDYH+VRE+V +  L I ++ T DQVAD F K L  ++    + 
Sbjct: 1381 YLSSNPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPTGDQVADGFTKALPVRQLENFKH 1440

Query: 334  KL 329
             L
Sbjct: 1441 NL 1442



 Score =  206 bits (523), Expect = 8e-50
 Identities = 100/172 (58%), Positives = 121/172 (70%)
 Frame = -3

Query: 3091 NTTIKAFQSDGGGEYTKRAFQNFLVKHGIQFRSSCPHHPEQNGIAERKHRHIVDTGLTLL 2912
            N  I A QSD GGEY K    +F  K GI    SCPH  +QNG AERKHRHIV+ GLTLL
Sbjct: 574  NRKIIAMQSDWGGEYEK--LHSFFTKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLTLL 631

Query: 2911 AHASMPLTYWVEAFSTAVYLINRLPTKVLHQQIPFTKLFHEKPKFDTLRTFGSAFFPCLR 2732
            A++SMPL +W EAF  AVYLINR PTK+L    P   LF++ P + +LR FG A +P LR
Sbjct: 632  AYSSMPLKFWDEAFQAAVYLINRTPTKLLQFLTPLEHLFNQTPDYSSLRVFGCACWPHLR 691

Query: 2731 PYNAHKLHFRSKLCVFIGYSSNHMGYRCLDVPSGRVYLSRHVVFDKQQFPFS 2576
            PYN HKL FRSK C F+GYS+ H G++CLD  +GRVY+SR V+FD+  FPF+
Sbjct: 692  PYNTHKLQFRSKQCTFLGYSTLHKGFKCLDPSTGRVYISRDVIFDETNFPFA 743


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  548 bits (1411), Expect = e-153
 Identities = 276/523 (52%), Positives = 369/523 (70%), Gaps = 7/523 (1%)
 Frame = -3

Query: 1909 TRLQSGIRKPNSKFAMNI---HLSTPPEQEPTSYTQASKSPEWRTAMGAEFDALIQAGTW 1739
            TRLQSG+RK        I   H       EPT+  +A K   W+ AM +E+DAL++  TW
Sbjct: 915  TRLQSGVRKEKVYTDGTIKYKHSWFTASGEPTNDLEALKDKNWKLAMDSEYDALVKNKTW 974

Query: 1738 TLVPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDTFSPVVKHTT 1559
             LVPP    NI+  KWV+KIKRK+DG+++RYKARLVA GF Q+ G+D+ DTFSPVVK  T
Sbjct: 975  HLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAAT 1034

Query: 1558 IRVILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVCRLHRSLYGL 1379
            IR+IL+L VS GW ++QLDVQNAFLHG + EEVYM QP GF DP  P HVC+L ++LYGL
Sbjct: 1035 IRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGL 1094

Query: 1378 RQAPRAWHKRFSDYLEEVGFVMSQADHSLFIYRFGIIFIVLLIYVDDILVTGNDVVKIRA 1199
            +QAPRAW  R S  L ++GF  S+ D SLF    G I + +L+YVDDI+V  +      A
Sbjct: 1095 KQAPRAWFSRLSKKLMDLGFKGSKPDTSLFFLNKGDITMFVLVYVDDIIVASSSEKATAA 1154

Query: 1198 LVDSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVDSKPLATPVA 1019
            L+  L  +F +KDLG ++YFLGIE++K   G+++ Q  YA +LLK+ G +D KP  TP++
Sbjct: 1155 LLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYANDLLKKVGMIDCKPANTPLS 1214

Query: 1018 AG*KLSLFDGDPL--SDPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHKSTTVHWMAV 845
               KLSL +G  L   D + YRSVVGALQYLTL+RPD++++VN+VCQF+H  TTVHW+AV
Sbjct: 1215 VSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDIAFSVNKVCQFLHAPTTVHWIAV 1274

Query: 844  KRILRYLKGSVQYGL-VYQPGSNLIQAYSDADYAGNPDDRHSTGGYVVYFGLNPISWSAK 668
            KRILRYLK   + GL +++ GS L+  +SDAD+AG  DDR STGG+ ++ G N +SW+A+
Sbjct: 1275 KRILRYLKQCTRLGLEIHKSGSTLVSGFSDADWAGCLDDRRSTGGFAIFLGSNLVSWNAR 1334

Query: 667  KQRTVSRSSTEAEYRQLAYTAAELSCIRALFRDLGVGLP-VPTLWCENISSIALASNPVF 491
            KQ TVSRSSTE+EY+ +A   AE+  ++ L  +L +  P    +WC+N+ +  L++NPVF
Sbjct: 1335 KQATVSRSSTESEYKAIANATAEIMWVQTLLAELEIKSPKAAKIWCDNLGAKYLSANPVF 1394

Query: 490  HARTKHLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGLS 362
            HARTKH+EVDYH+VRE+V +  L I +++T DQVAD F K LS
Sbjct: 1395 HARTKHIEVDYHFVRERVSQKLLEIDFVSTNDQVADGFTKPLS 1437



 Score =  205 bits (522), Expect = 1e-49
 Identities = 97/169 (57%), Positives = 125/169 (73%)
 Frame = -3

Query: 3082 IKAFQSDGGGEYTKRAFQNFLVKHGIQFRSSCPHHPEQNGIAERKHRHIVDTGLTLLAHA 2903
            I A Q+D GGEY  ++  +F  K GI    SCPH  +QNG AERKHRHIV+ GL+LL+HA
Sbjct: 571  ILAMQTDWGGEY--QSLNSFFSKIGIVHHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHA 628

Query: 2902 SMPLTYWVEAFSTAVYLINRLPTKVLHQQIPFTKLFHEKPKFDTLRTFGSAFFPCLRPYN 2723
            SMPL +W EAF  A YLINR+P++V+H   P  KLF +KP + +LR FG A +P LRPYN
Sbjct: 629  SMPLKFWDEAFQVATYLINRVPSRVIHNISPLEKLFKQKPDYSSLRIFGCACWPNLRPYN 688

Query: 2722 AHKLHFRSKLCVFIGYSSNHMGYRCLDVPSGRVYLSRHVVFDKQQFPFS 2576
             HKL FRSK CVF+G+S+ H G++CL+V +GR+Y+SR VVFD+  FPF+
Sbjct: 689  NHKLQFRSKRCVFLGFSTMHKGFKCLEVSTGRIYISRDVVFDENIFPFT 737


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  548 bits (1411), Expect = e-153
 Identities = 275/522 (52%), Positives = 372/522 (71%), Gaps = 4/522 (0%)
 Frame = -3

Query: 1918 RMVTRLQSGIRKPNSKFAMNIHLSTPPEQEPTSYTQASKSPEWRTAMGAEFDALIQAGTW 1739
            R  TRLQSGIRK  S                    +A  +  W+ AM AE+ ALI+  TW
Sbjct: 873  RPKTRLQSGIRKEKS------------------LEEAVNNKHWKEAMDAEYMALIENKTW 914

Query: 1738 TLVPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDTFSPVVKHTT 1559
             LVPP    N++  KWV+K+KRK+DGS++RYKARLVA GF Q+ G+D+ DTFSPVVK  T
Sbjct: 915  HLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAAT 974

Query: 1558 IRVILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVCRLHRSLYGL 1379
            IR++L+L VS GW ++QLDV+NAFLHG++ EEVYM+QP G+   + P++VC+L ++LYGL
Sbjct: 975  IRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMKQPPGYEKKSMPNYVCKLDKALYGL 1034

Query: 1378 RQAPRAWHKRFSDYLEEVGFVMSQADHSLFIYRFGIIFIVLLIYVDDILVTGNDVVKIRA 1199
            +QAPRAW+ R S  L E+GFV S+AD SLF Y+ G + I LLIYVDDI+V  +       
Sbjct: 1035 KQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVDDIIVASSVPDATST 1094

Query: 1198 LVDSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVDSKPLATPVA 1019
            L+  L   F +KDLG ++YFLGIE++K   G++++Q  YA +LL+R G  + KP++TP++
Sbjct: 1095 LLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLS 1154

Query: 1018 AG*KLSLFDGDPL--SDPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHKSTTVHWMAV 845
               KLS+ +G  L   D T+YRSVVGALQYLTL+RPD+S+++N+VCQF+H  TT HW AV
Sbjct: 1155 TSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAV 1214

Query: 844  KRILRYLKGSVQYGLVY-QPGSNLIQAYSDADYAGNPDDRHSTGGYVVYFGLNPISWSAK 668
            KRILRY+K +V  GL + +  S L+  +SDAD+AG+PDDR STGG+ V+ G N +SWSA+
Sbjct: 1215 KRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSAR 1274

Query: 667  KQRTVSRSSTEAEYRQLAYTAAELSCIRALFRDLGVGLP-VPTLWCENISSIALASNPVF 491
            KQ TVSRSS EAEY+ LA   AE+  ++ L ++LGV  P    LWC+N+ +  L++NP+F
Sbjct: 1275 KQATVSRSSIEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIF 1334

Query: 490  HARTKHLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGL 365
            HARTKH+EVD+H+VRE+V R  L I YI+T+DQVAD F K +
Sbjct: 1335 HARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAI 1376



 Score =  197 bits (501), Expect = 3e-47
 Identities = 95/169 (56%), Positives = 118/169 (69%)
 Frame = -3

Query: 3082 IKAFQSDGGGEYTKRAFQNFLVKHGIQFRSSCPHHPEQNGIAERKHRHIVDTGLTLLAHA 2903
            I A Q+D GGEY K     F  K GI    SCP+  +QNG AERKHRH+++  LTLLAHA
Sbjct: 539  ILAVQTDWGGEYQK--LNTFFAKIGISHHVSCPYAHQQNGSAERKHRHLIEVALTLLAHA 596

Query: 2902 SMPLTYWVEAFSTAVYLINRLPTKVLHQQIPFTKLFHEKPKFDTLRTFGSAFFPCLRPYN 2723
            SMP+ +W EA   A YLINR P+KV++   P  +LF EKP +  LR FG A +P LRPYN
Sbjct: 597  SMPIKFWDEAVLAAAYLINRTPSKVINFACPLEQLFKEKPNYTALRIFGCAVWPNLRPYN 656

Query: 2722 AHKLHFRSKLCVFIGYSSNHMGYRCLDVPSGRVYLSRHVVFDKQQFPFS 2576
             HKL FRSK CVF+GYS+ H G++CL++ +GRVY+SR V FD+  FPFS
Sbjct: 657  KHKLAFRSKRCVFLGYSNLHKGFKCLEIATGRVYVSRDVTFDESIFPFS 705


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  547 bits (1410), Expect = e-152
 Identities = 282/541 (52%), Positives = 376/541 (69%), Gaps = 8/541 (1%)
 Frame = -3

Query: 1927 EQNRMVTRLQSGIRKP----NSKFAMNIHLSTPPEQEPTSYTQASKSPEWRTAMGAEFDA 1760
            E  R  TRLQSGIRK     +      +  ST    EP +   A ++  W+ AM AE+ A
Sbjct: 889  EAQRPRTRLQSGIRKEKVYTDGTVKWGMLTSTG---EPENLQDALQNNNWKCAMDAEYMA 945

Query: 1759 LIQAGTWTLVPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDTFS 1580
            LI+  TW LVPP    N++  KWV+KIKRK DGS++RYKARLVA GF Q+ G+D+ DTFS
Sbjct: 946  LIKNNTWHLVPPQQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFS 1005

Query: 1579 PVVKHTTIRVILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVCRL 1400
            PVVK  TIR+IL++ VS GWC++QLDVQNAFLHG++ EEVYM+QP G+ +P+ P +VC+L
Sbjct: 1006 PVVKAATIRIILSIAVSRGWCLRQLDVQNAFLHGVLEEEVYMKQPPGYENPSTPDYVCKL 1065

Query: 1399 HRSLYGLRQAPRAWHKRFSDYLEEVGFVMSQADHSLFIYRFGIIFIVLLIYVDDILVTGN 1220
             ++LYGL+QAPRAW+ R S  L ++GF  S+AD SLF Y  G + I LLIYVDDI+V  +
Sbjct: 1066 DKALYGLKQAPRAWYSRLSGKLHDLGFKGSKADTSLFFYNKGSLTIFLLIYVDDIIVVSS 1125

Query: 1219 DVVKIRALVDSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVDSK 1040
                + AL+  L  +F +KDLG ++YFLGIE+ K   G+L++Q  YA +LLKR    D K
Sbjct: 1126 RKEAVSALLQDLQKEFALKDLGDLHYFLGIEVTKIPGGILMSQEKYASDLLKRVNMSDCK 1185

Query: 1039 PLATPVAAG*KLSLFDGDPL--SDPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHKST 866
             +ATP++A  KL    G  L  +D T+YRS+VGALQYLTL+R D++++VN+VCQF+H  T
Sbjct: 1186 SVATPLSASEKLIAGKGTILGPNDATQYRSIVGALQYLTLTRLDIAFSVNKVCQFLHNPT 1245

Query: 865  TVHWMAVKRILRYLKGSVQYGL-VYQPGSNLIQAYSDADYAGNPDDRHSTGGYVVYFGLN 689
            T HW AVKRILRY+K     GL + +  S ++  YSDAD+AG  DDR STGG+ VY G N
Sbjct: 1246 TEHWAAVKRILRYIKQCTGLGLRICKSSSMIVSGYSDADWAGCLDDRRSTGGFAVYLGDN 1305

Query: 688  PISWSAKKQRTVSRSSTEAEYRQLAYTAAELSCIRALFRDLGVGLP-VPTLWCENISSIA 512
             +SW+AKKQ TVSRSSTEAEY+ LA   AE+  ++ L ++L +  P +  LWC+N+ +  
Sbjct: 1306 LVSWNAKKQATVSRSSTEAEYKALANATAEIMWVQTLLQELNIVSPAMAQLWCDNMGAKY 1365

Query: 511  LASNPVFHARTKHLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGLSRQRFAGLRFK 332
            L+ NPVFHARTKH+EVDYH+VRE+V R  L + Y++T DQVAD F K L  ++    ++ 
Sbjct: 1366 LSFNPVFHARTKHIEVDYHFVRERVARKLLQVDYVSTNDQVADGFTKALPVKQLENFKYN 1425

Query: 331  L 329
            L
Sbjct: 1426 L 1426



 Score =  203 bits (516), Expect = 5e-49
 Identities = 99/172 (57%), Positives = 121/172 (70%)
 Frame = -3

Query: 3091 NTTIKAFQSDGGGEYTKRAFQNFLVKHGIQFRSSCPHHPEQNGIAERKHRHIVDTGLTLL 2912
            N  I A Q+D GGEY K    +F  K GI    SCPH  +QNG AERKHRHIV+ GL LL
Sbjct: 572  NRKIVAMQTDWGGEYQK--LHSFFNKVGITHHVSCPHTHQQNGSAERKHRHIVEVGLALL 629

Query: 2911 AHASMPLTYWVEAFSTAVYLINRLPTKVLHQQIPFTKLFHEKPKFDTLRTFGSAFFPCLR 2732
            A++SMPL +W EAF +AVYLINR P++VLH   P  +L   KP ++ LR FG A +P LR
Sbjct: 630  AYSSMPLKFWGEAFLSAVYLINRTPSRVLHDVSPLERLLGHKPDYNALRVFGCACWPNLR 689

Query: 2731 PYNAHKLHFRSKLCVFIGYSSNHMGYRCLDVPSGRVYLSRHVVFDKQQFPFS 2576
            PYN HKL FRS  C F+GYS+ H G++CLD  +GRVY+SR VVFD+ QFPF+
Sbjct: 690  PYNKHKLQFRSTTCTFLGYSTLHKGFKCLDPSTGRVYISRDVVFDETQFPFT 741


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  545 bits (1405), Expect = e-152
 Identities = 274/521 (52%), Positives = 371/521 (71%), Gaps = 5/521 (0%)
 Frame = -3

Query: 1909 TRLQSGIRKPNSKFAMNIHLST-PPEQEPTSYTQASKSPEWRTAMGAEFDALIQAGTWTL 1733
            TRL+SGIRK        +         EP +  +A     W+ AM AE+DALI+  TW L
Sbjct: 900  TRLRSGIRKEKVYTDGTVKYGCFTSTGEPQNDKEALGDKNWKAAMEAEYDALIKNDTWHL 959

Query: 1732 VPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDTFSPVVKHTTIR 1553
            VP     N++  KWV+KIKRK+DG+++RYKARLVA GF Q+ G+D+ DTFSPVVK  TIR
Sbjct: 960  VPYEKGQNVIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIR 1019

Query: 1552 VILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVCRLHRSLYGLRQ 1373
            +IL++ VS GW ++QLDVQNAFLHG + EEVYM+QP GF   + P++VC+L ++LYGL+Q
Sbjct: 1020 IILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESFSKPNYVCKLDKALYGLKQ 1079

Query: 1372 APRAWHKRFSDYLEEVGFVMSQADHSLFIYRFGIIFIVLLIYVDDILVTGNDVVKIRALV 1193
            APRAW+ R S  L E+GF  S+AD SLF    G I + +L+YVDDI++  +      AL+
Sbjct: 1080 APRAWYSRLSKKLVELGFEASKADTSLFFLNKGGIIMFVLVYVDDIIIASSTEKATTALL 1139

Query: 1192 DSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVDSKPLATPVAAG 1013
              L+ +F +KDLG ++YFLGIE+ K   G+++TQ  YA +LLKR    + KP++TP++  
Sbjct: 1140 KDLNKEFALKDLGDLHYFLGIEVTKVPNGIVLTQEKYANDLLKRVNMSNCKPVSTPLSVS 1199

Query: 1012 *KLSLFDGDPL--SDPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHKSTTVHWMAVKR 839
             KL+L++G PL  +D T+YRS+VGALQYLTL+RPD++Y+VN+VCQF+H  TT HW AVKR
Sbjct: 1200 EKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTDHWTAVKR 1259

Query: 838  ILRYLKGSVQYGL-VYQPGSNLIQAYSDADYAGNPDDRHSTGGYVVYFGLNPISWSAKKQ 662
            ILRYL      GL +++  S L+  YSDAD+AG+ DDR STGG+ V+ G N +SWSA+KQ
Sbjct: 1260 ILRYLNQCTSLGLNIHKSASTLVHGYSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQ 1319

Query: 661  RTVSRSSTEAEYRQLAYTAAELSCIRALFRDLGVGLP-VPTLWCENISSIALASNPVFHA 485
             TVSRSSTEAEY+ +A T AEL  ++ L R+LG+  P    +WC+N+ +  L++NPVFHA
Sbjct: 1320 PTVSRSSTEAEYKAVANTTAELIWVQTLLRELGIDSPKAAKIWCDNLGAKYLSANPVFHA 1379

Query: 484  RTKHLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGLS 362
            RTKH+EVDYH+VRE+V +  L I ++ + DQVAD F K LS
Sbjct: 1380 RTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALS 1420



 Score =  208 bits (529), Expect = 2e-50
 Identities = 99/169 (58%), Positives = 124/169 (73%)
 Frame = -3

Query: 3082 IKAFQSDGGGEYTKRAFQNFLVKHGIQFRSSCPHHPEQNGIAERKHRHIVDTGLTLLAHA 2903
            I A Q+D GGEY K    +F  K GI    SCPH  +QNG AERKHRHI++ GL+LL++A
Sbjct: 577  IIAMQTDWGGEYQK--LNSFFAKIGIDHHVSCPHTHQQNGSAERKHRHIIEVGLSLLSYA 634

Query: 2902 SMPLTYWVEAFSTAVYLINRLPTKVLHQQIPFTKLFHEKPKFDTLRTFGSAFFPCLRPYN 2723
            SMPL +W EAF  A YLINR+P+K +    P  KLF++KP + +LR FG A +P LRPYN
Sbjct: 635  SMPLKFWDEAFVAATYLINRVPSKTIQNSTPLEKLFNQKPDYLSLRVFGCACWPHLRPYN 694

Query: 2722 AHKLHFRSKLCVFIGYSSNHMGYRCLDVPSGRVYLSRHVVFDKQQFPFS 2576
             HKL FRSK CVF+G+S++H G++CLDV SGRVY+SR VVFD+  FPFS
Sbjct: 695  THKLQFRSKQCVFLGFSTHHKGFKCLDVSSGRVYISRDVVFDENIFPFS 743


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  543 bits (1400), Expect = e-151
 Identities = 275/528 (52%), Positives = 372/528 (70%), Gaps = 5/528 (0%)
 Frame = -3

Query: 1930 AEQNRMVTRLQSGIRKPNSKFAMNIHLST-PPEQEPTSYTQASKSPEWRTAMGAEFDALI 1754
            A  +R  TRL+SGIRK        +         EP +  +A     WR AM  E++ALI
Sbjct: 902  APASRPHTRLRSGIRKEKVYTDGTVKYGCFSSTGEPQNDKEALGDKNWRDAMETEYNALI 961

Query: 1753 QAGTWTLVPPTSSMNILPNKWVFKIKRKSDGSIERYKARLVANGFHQQEGLDFHDTFSPV 1574
            +  TW LVP     NI+  KWV+KIKRK+DG+++RYKARLVA GF Q+ G+D+ DTFSPV
Sbjct: 962  KNDTWHLVPYEKGQNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPV 1021

Query: 1573 VKHTTIRVILALTVSSGWCIKQLDVQNAFLHGIVHEEVYMRQPKGFVDPNYPSHVCRLHR 1394
            VK  TIR+IL++ VS GW ++QLDVQNAFLHG + EEVYM+QP GF   + P +VC+L +
Sbjct: 1022 VKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESSSKPDYVCKLDK 1081

Query: 1393 SLYGLRQAPRAWHKRFSDYLEEVGFVMSQADHSLFIYRFGIIFIVLLIYVDDILVTGNDV 1214
            +LYGL+QAPRAW+ R S  L E+GF  S+AD SLF    G I + +L+YVDDI+V  +  
Sbjct: 1082 ALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGILMFVLVYVDDIIVASSTE 1141

Query: 1213 VKIRALVDSLHSKFHMKDLGSVNYFLGIEINKKGTGMLITQTNYALNLLKRTGFVDSKPL 1034
                AL+  L+ +F +KDLG ++YFLGIE+ K   G+++TQ  YA +LLKR    + KP+
Sbjct: 1142 KATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNGVILTQEKYANDLLKRVNMSNCKPV 1201

Query: 1033 ATPVAAG*KLSLFDGDPL--SDPTEYRSVVGALQYLTLSRPDLSYAVNQVCQFMHKSTTV 860
            +TP++   KL+L++G PL  +D  +YRS+VGALQYLTL+RPD++Y+VN+VCQF+H  TT 
Sbjct: 1202 STPLSVSEKLTLYEGSPLGPNDAIQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTS 1261

Query: 859  HWMAVKRILRYLKGSVQYGL-VYQPGSNLIQAYSDADYAGNPDDRHSTGGYVVYFGLNPI 683
            HW+AVKRILRYL      GL +++  S L+  YSDAD+AG+ DDR STGG+ V+ G N +
Sbjct: 1262 HWIAVKRILRYLNQCTSLGLHIHKSASTLVHGYSDADWAGSIDDRKSTGGFAVFLGSNLV 1321

Query: 682  SWSAKKQRTVSRSSTEAEYRQLAYTAAELSCIRALFRDLGVGLP-VPTLWCENISSIALA 506
            SWSA+KQ TVSRSSTEAEY+ +A T AEL  ++ L ++LG+  P    +WC+N+ +  L+
Sbjct: 1322 SWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTLLKELGIESPKAAKIWCDNLGAKYLS 1381

Query: 505  SNPVFHARTKHLEVDYHYVREKVLRGELVIRYIATQDQVADIFIKGLS 362
            +NPVFHARTKH+EVDYH+VRE+V +  L I ++ + DQVAD F K LS
Sbjct: 1382 ANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALS 1429



 Score =  186 bits (472), Expect = 7e-44
 Identities = 93/170 (54%), Positives = 118/170 (69%), Gaps = 1/170 (0%)
 Frame = -3

Query: 3082 IKAFQSDG-GGEYTKRAFQNFLVKHGIQFRSSCPHHPEQNGIAERKHRHIVDTGLTLLAH 2906
            I A Q+D  GG Y K    +F  + G+           QNG AERKHRHIV+ GL+LL++
Sbjct: 576  IIAMQTDWRGGRYQK--LNSFFAQIGLIIMCHVLTLIRQNGSAERKHRHIVEVGLSLLSY 633

Query: 2905 ASMPLTYWVEAFSTAVYLINRLPTKVLHQQIPFTKLFHEKPKFDTLRTFGSAFFPCLRPY 2726
            ASMPL +W EAF  A YLINR+P+K +    P  KLF++KP + +LR FG A +P LRPY
Sbjct: 634  ASMPLKFWDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYSSLRVFGCACWPHLRPY 693

Query: 2725 NAHKLHFRSKLCVFIGYSSNHMGYRCLDVPSGRVYLSRHVVFDKQQFPFS 2576
            N HKL FRSK CVF+G+S++H G++CLDV SGRVY+SR VVFD+  FPFS
Sbjct: 694  NTHKLQFRSKQCVFLGFSTHHKGFKCLDVSSGRVYISRDVVFDENVFPFS 743